-
1
-
-
0030829959
-
Influence of acetic acid on the growth of Escherichia coli K12 during high-cell-density cultivation in a dialysis reactor
-
Nakano, K.; Rischke, M.; Sato, S.; Maerkl, H. Influence of acetic acid on the growth of Escherichia coli K12 during high-cell-density cultivation in a dialysis reactor. Appl. Microbiol. Biotechnol. 1997, 48 (5), 597-601.
-
(1997)
Appl. Microbiol. Biotechnol
, vol.48
, Issue.5
, pp. 597-601
-
-
Nakano, K.1
Rischke, M.2
Sato, S.3
Maerkl, H.4
-
2
-
-
0028418575
-
-
Ko, Y.-F.; Bentley, W. E.; Weigand, W. A. A metabolic model of cellular energetics and carbon flux during aerobic Escherichia coli fermentation. Biotechnol. Bioeng. 1994, 43 (9), 847-855.
-
Ko, Y.-F.; Bentley, W. E.; Weigand, W. A. A metabolic model of cellular energetics and carbon flux during aerobic Escherichia coli fermentation. Biotechnol. Bioeng. 1994, 43 (9), 847-855.
-
-
-
-
3
-
-
33749571961
-
Overcoming acetate in Escherichia coli recombinant protein fermentations
-
Eiteman, M. A.; Altman, E. Overcoming acetate in Escherichia coli recombinant protein fermentations. Trends Biotechnol. 2006, 24 (11), 530-533.
-
(2006)
Trends Biotechnol
, vol.24
, Issue.11
, pp. 530-533
-
-
Eiteman, M.A.1
Altman, E.2
-
4
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A.; Wanner, B. L. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U.S.A. 2000, 97 (12), 6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, Issue.12
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
5
-
-
35348825929
-
-
Mashego, M. R. Ph.D. Thesis. Robust experimental methods to study in vivo pre-steady state kinetics of primary metabolism in Saccharomyces cerevisiae. TU Delft, 2005.
-
Mashego, M. R. Ph.D. Thesis. Robust experimental methods to study in vivo pre-steady state kinetics of primary metabolism in Saccharomyces cerevisiae. TU Delft, 2005.
-
-
-
-
6
-
-
0038034719
-
Critical evaluation of sampling techniques for residual glucose determination in carbon-limited chemostat cultures of Saccharomyces cerevisiae
-
Mashego, M. R.; van Gulik, W. M.; Vinke, J. L.; Heijnen, J. J. Critical evaluation of sampling techniques for residual glucose determination in carbon-limited chemostat cultures of Saccharomyces cerevisiae. Biotechnol. Bioeng. 2003, 83 (4), 395-399.
-
(2003)
Biotechnol. Bioeng
, vol.83
, Issue.4
, pp. 395-399
-
-
Mashego, M.R.1
van Gulik, W.M.2
Vinke, J.L.3
Heijnen, J.J.4
-
7
-
-
0343471961
-
In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: I. Experimental observations
-
Theobald, U.; Mailinger, W.; Baltes, M.; Reuss, M.; Rizzi, M. In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: I. Experimental observations. Biotechnol. Bioeng. 1997, 55, 305-316.
-
(1997)
Biotechnol. Bioeng
, vol.55
, pp. 305-316
-
-
Theobald, U.1
Mailinger, W.2
Baltes, M.3
Reuss, M.4
Rizzi, M.5
-
8
-
-
0001457369
-
The role of polyamines in the neutralization of bacteriophage deoxyribonucleic acid
-
Ames, B. N.; Dubin, D. T. The role of polyamines in the neutralization of bacteriophage deoxyribonucleic acid. J. Biol. Chem. 1960, 253 (3), 769-775.
-
(1960)
J. Biol. Chem
, vol.253
, Issue.3
, pp. 769-775
-
-
Ames, B.N.1
Dubin, D.T.2
-
9
-
-
1642268980
-
Microtiter assay for glutamine synthetase biosynthetic activity using inorganic phosphate detection
-
Gawronski, J. D.; Benson, D. R. Microtiter assay for glutamine synthetase biosynthetic activity using inorganic phosphate detection. Anal. Biochem. 2004, 327, 114-118.
-
(2004)
Anal. Biochem
, vol.327
, pp. 114-118
-
-
Gawronski, J.D.1
Benson, D.R.2
-
10
-
-
0000807711
-
-
Lowry, O. H.; A., L. J. The determination of inorganic phosphate in the presence of labile phosphate esters. J. Biol. Chem. 1946, 162, 412-428.
-
Lowry, O. H.; A., L. J. The determination of inorganic phosphate in the presence of labile phosphate esters. J. Biol. Chem. 1946, 162, 412-428.
-
-
-
-
11
-
-
33747198765
-
MFA for overdetermined systems reviewed and compared with RNA expression data to elucidate the difference in shikimate yield between carbon- and phosphate-limited continuous cultures of E. coli W3110.shik1
-
Lequeux, G.; Johansson, L.; Maertens, J.; Vanrolleghem, P. A.; Lidén, G. MFA for overdetermined systems reviewed and compared with RNA expression data to elucidate the difference in shikimate yield between carbon- and phosphate-limited continuous cultures of E. coli W3110.shik1. Biotechnol. Prog. 2006, 22, 1056-1070.
-
(2006)
Biotechnol. Prog
, vol.22
, pp. 1056-1070
-
-
Lequeux, G.1
Johansson, L.2
Maertens, J.3
Vanrolleghem, P.A.4
Lidén, G.5
-
12
-
-
0031555498
-
Comparative studies of Escherichia coli strains using different glucose uptake systems: Metabolism and energetics
-
Chen, R.; Yap, W. M. G. J.; Postma, P. W.; Bailey, J. E. Comparative studies of Escherichia coli strains using different glucose uptake systems: Metabolism and energetics. Biotechnol. Bioeng. 1997, 56 (5), 583-590.
-
(1997)
Biotechnol. Bioeng
, vol.56
, Issue.5
, pp. 583-590
-
-
Chen, R.1
Yap, W.M.G.J.2
Postma, P.W.3
Bailey, J.E.4
-
13
-
-
0031782955
-
Regulation of acetate metabolism by protein phosphorylation in enteric bacteria
-
Cozzone, A. J. Regulation of acetate metabolism by protein phosphorylation in enteric bacteria. Annu. Rev. Microbiol. 1998, 52, 127-164.
-
(1998)
Annu. Rev. Microbiol
, vol.52
, pp. 127-164
-
-
Cozzone, A.J.1
-
15
-
-
0032753923
-
Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism
-
Sauer, U.; Lasko, D. R.; Fiaux, J.; Hochuli, M.; Glaser, R.; Szyperski, T.; Wuthrich, K.; Bailey, J. E. Metabolic flux ratio analysis of genetic and environmental modulations of Escherichia coli central carbon metabolism. J. Bacteriol. 1999, 181 (21), 6679-6688.
-
(1999)
J. Bacteriol
, vol.181
, Issue.21
, pp. 6679-6688
-
-
Sauer, U.1
Lasko, D.R.2
Fiaux, J.3
Hochuli, M.4
Glaser, R.5
Szyperski, T.6
Wuthrich, K.7
Bailey, J.E.8
-
16
-
-
0035213758
-
Short- and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose-limited growth conditions in continuous culture and vice versa
-
Wick, L. M.; Quadroni, M.; Egli, T. Short- and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose-limited growth conditions in continuous culture and vice versa. Environ. Microbiol. 2001, 3, 588-599.
-
(2001)
Environ. Microbiol
, vol.3
, pp. 588-599
-
-
Wick, L.M.1
Quadroni, M.2
Egli, T.3
-
17
-
-
0027723421
-
Metabolic capabilities of Escherichia coli: II. Optimal growth patterns
-
Varma, A.; Palsson, B. O. Metabolic capabilities of Escherichia coli: II. Optimal growth patterns. J. Theor. Biol. 1993, 165 (4), 503-522.
-
(1993)
J. Theor. Biol
, vol.165
, Issue.4
, pp. 503-522
-
-
Varma, A.1
Palsson, B.O.2
-
18
-
-
0343035686
-
Stochiometric model of Escherichia coli metabolism: Incorporation of growth-rate dependent biomass composition and mechanistic energy requirements
-
Pramanik, J.; Keasling, J. D. Stochiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. Biotechnol. Bioeng. 1997, 56 (4), 398-421.
-
(1997)
Biotechnol. Bioeng
, vol.56
, Issue.4
, pp. 398-421
-
-
Pramanik, J.1
Keasling, J.D.2
-
19
-
-
0029867572
-
An encyclopedia of Escherichia coli genes and metabolism
-
Karp, P. D.; Riley, M.; Paley, S. M.; Pellegrini-Toole, A. EcoCyc: An encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res. 1996, 24 (1), 32-39.
-
(1996)
Nucleic Acids Res
, vol.24
, Issue.1
, pp. 32-39
-
-
Karp, P.D.1
Riley, M.2
Paley, S.M.3
Pellegrini-Toole4
EcoCyc, A.5
-
20
-
-
0036086299
-
The MetaCyc database
-
Karp, P. D.; Riley, M.; Paley, S. M.; Pellegrini-Toole, A. The MetaCyc database. Nucleic Acids Res. 2002, 30 (1), 59-61.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 59-61
-
-
Karp, P.D.1
Riley, M.2
Paley, S.M.3
Pellegrini-Toole, A.4
-
21
-
-
0030847958
-
-
Karp, P. D.; Riley, M.; Paley, S. M.; Pellegrini-Toole, A.; Krummenacker, M. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res. 1997, 25 (1), 43-50.
-
Karp, P. D.; Riley, M.; Paley, S. M.; Pellegrini-Toole, A.; Krummenacker, M. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res. 1997, 25 (1), 43-50.
-
-
-
-
22
-
-
0031804621
-
-
Karp, P. D.; Riley, M.; Paley, S. M.; Pellegrini-Toole, A.; Krummenacker, M. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res. 1998, 26 (1), 50-53.
-
Karp, P. D.; Riley, M.; Paley, S. M.; Pellegrini-Toole, A.; Krummenacker, M. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res. 1998, 26 (1), 50-53.
-
-
-
-
23
-
-
0032895464
-
-
Karp, P. D.; Riley, M.; Paley, S. M.; Pellegrini-Toole, A.; Krummenacker, M. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res. 1999, 27 (1), 55-58.
-
Karp, P. D.; Riley, M.; Paley, S. M.; Pellegrini-Toole, A.; Krummenacker, M. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res. 1999, 27 (1), 55-58.
-
-
-
-
24
-
-
0036084127
-
The EcoCyc database
-
Karp, P. D.; Riley, M.; Saier, M.; Paulsen, I. T.; Collado-Vides, J.; Paley, S. M.; Pellegrini-Toole, A.; Bonavides, C.; Gama-Castro, S. The EcoCyc database. Nucleic Acids Res. 2002, 30 (1), 56-58.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 56-58
-
-
Karp, P.D.1
Riley, M.2
Saier, M.3
Paulsen, I.T.4
Collado-Vides, J.5
Paley, S.M.6
Pellegrini-Toole, A.7
Bonavides, C.8
Gama-Castro, S.9
-
25
-
-
0033964238
-
The EcoCyc and MetaCyc databases
-
Karp, P. D.; Riley, M.; Saier, M.; Paulsen, I. T.; Paley, S. M.; Pellegrini-Toole, A. The EcoCyc and MetaCyc databases. Nucleic Acids Res. 2000, 28 (1), 56-59.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 56-59
-
-
Karp, P.D.1
Riley, M.2
Saier, M.3
Paulsen, I.T.4
Paley, S.M.5
Pellegrini-Toole, A.6
-
26
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12
-
Reed, J. L.; Vo, T. D.; Schilling, C. H.; Palsson, B. An expanded genome-scale model of Escherichia coli K-12. Genome Biol. 2003, 4, R54.
-
(2003)
Genome Biol
, vol.4
-
-
Reed, J.L.1
Vo, T.D.2
Schilling, C.H.3
Palsson, B.4
-
27
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa, M.; Goto, S., KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 2000, 28, 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
28
-
-
0032919364
-
Kyoto Encyclopedia of genes and Genomes
-
Ogata, H. Kyoto Encyclopedia of genes and Genomes. Nucleic Acids Res. 1999, 27, 29-34.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 29-34
-
-
Ogata, H.1
-
29
-
-
35348902961
-
-
Lequeux, G.; Van der Heijden, R.; Van den Broeck, S.; Vanrolleghem, P. A. In Computational methods to determine conserved moieties and parallel pathways in metabolic network models, 9th IFAC conference on computer applications in biotechnology CAB9, Nancy, France, 2004; Nancy, France, 2004.
-
Lequeux, G.; Van der Heijden, R.; Van den Broeck, S.; Vanrolleghem, P. A. In Computational methods to determine conserved moieties and parallel pathways in metabolic network models, 9th IFAC conference on computer applications in biotechnology CAB9, Nancy, France, 2004; Nancy, France, 2004.
-
-
-
-
30
-
-
33750973382
-
Metabolic characterisation of E. coli citrate synthase and phosphoenolpyruvate-carboxylase mutants in aerobic cultures
-
De Maeseneire, S. L.; De Mey, M.; Vandedrinck, S.; Vandamme, E. J. Metabolic characterisation of E. coli citrate synthase and phosphoenolpyruvate-carboxylase mutants in aerobic cultures. Biotechnol. Lett. 2006, 28 (23), 1945-1953.
-
(2006)
Biotechnol. Lett
, vol.28
, Issue.23
, pp. 1945-1953
-
-
De Maeseneire, S.L.1
De Mey, M.2
Vandedrinck, S.3
Vandamme, E.J.4
-
31
-
-
34547471980
-
Construction and model-based analysis of a promoter library for E. coli: An indispensable tool for metabolic engineering
-
De Mey, M.; Maertens, J.; Lequeux, G. J.; Soetaert, W. K.; Vandamme, E. J. Construction and model-based analysis of a promoter library for E. coli: an indispensable tool for metabolic engineering. BMC Biotechnol. 2007, 7, 34.
-
(2007)
BMC Biotechnol
, vol.7
, pp. 34
-
-
De Mey, M.1
Maertens, J.2
Lequeux, G.J.3
Soetaert, W.K.4
Vandamme, E.J.5
-
32
-
-
0033845185
-
Effects of mutations in acetate metabolism on high-cell-density growth of Escherichia coli
-
Contiero, J.; Beatty, C. M.; Kumari, S.; DeSanti, C. L.; Strohl, W. R.; Wolfe, A. J. Effects of mutations in acetate metabolism on high-cell-density growth of Escherichia coli. J. Ind. Microbiol. Biotechnol. 2000, 24 (6), 421-430.
-
(2000)
J. Ind. Microbiol. Biotechnol
, vol.24
, Issue.6
, pp. 421-430
-
-
Contiero, J.1
Beatty, C.M.2
Kumari, S.3
DeSanti, C.L.4
Strohl, W.R.5
Wolfe, A.J.6
-
33
-
-
0024416873
-
Control of carbon flux to acetate excretion during growth of Escherichia coli in batch and continuous cultures
-
El-Mansi, E. M. T.; Holms, W. H. Control of carbon flux to acetate excretion during growth of Escherichia coli in batch and continuous cultures. J. Gen. Microbiol. 1989, 135 (11), 2875-2884.
-
(1989)
J. Gen. Microbiol
, vol.135
, Issue.11
, pp. 2875-2884
-
-
El-Mansi, E.M.T.1
Holms, W.H.2
-
34
-
-
0033527823
-
Effect of inactivation of nuo and ackA-pta on redistribution of metabolic fluxes in Escherichia coli
-
Yang, Y.-T.; Bennett, G. N.; San, K.-Y. Effect of inactivation of nuo and ackA-pta on redistribution of metabolic fluxes in Escherichia coli. Biotechnol. Bioeng. 1999, 65 (3), 291-297.
-
(1999)
Biotechnol. Bioeng
, vol.65
, Issue.3
, pp. 291-297
-
-
Yang, Y.-T.1
Bennett, G.N.2
San, K.-Y.3
-
35
-
-
16344391449
-
Redistribution of metabolic fluxes in the central aerobic metabolic pathway of E. coli mutant strains with deletion of the ackA-pta and poxB pathways for the synthesis of isoamyl acetate
-
Dittrich, C. R.; Vadali, R. V.; Bennett, G. N.; San, K.-Y. Redistribution of metabolic fluxes in the central aerobic metabolic pathway of E. coli mutant strains with deletion of the ackA-pta and poxB pathways for the synthesis of isoamyl acetate. Biotechnol. Prog. 2005, 21 627-631.
-
(2005)
Biotechnol. Prog
, vol.21
, pp. 627-631
-
-
Dittrich, C.R.1
Vadali, R.V.2
Bennett, G.N.3
San, K.-Y.4
-
36
-
-
0030853330
-
Reduction of aerobic acetate production by Escherichia coli
-
Farmer, W. R.; Liao, J. C. Reduction of aerobic acetate production by Escherichia coli. Appl. Environ. Microbiol. 1997, 63 (8), 3205-3210.
-
(1997)
Appl. Environ. Microbiol
, vol.63
, Issue.8
, pp. 3205-3210
-
-
Farmer, W.R.1
Liao, J.C.2
-
37
-
-
0347761259
-
Fundamental Escherichia coli biochemical pathways for biomass and energy production: Identification of reactions
-
Carlson, R.; Srienc, F. Fundamental Escherichia coli biochemical pathways for biomass and energy production: identification of reactions. Biotechnol. Bioeng. 2004, 85 (1), 1-13.
-
(2004)
Biotechnol. Bioeng
, vol.85
, Issue.1
, pp. 1-13
-
-
Carlson, R.1
Srienc, F.2
-
38
-
-
0028108519
-
Metabolic flux balancing: Basic concepts, scientific and practical use
-
Varma, A.; Palsson, B. Metabolic flux balancing: basic concepts, scientific and practical use. Biotechnology 1994, 12, 994-998.
-
(1994)
Biotechnology
, vol.12
, pp. 994-998
-
-
Varma, A.1
Palsson, B.2
-
39
-
-
15844371174
-
Metabolic flux analysis of E. coli in glucose-limited continuous culture. I. Growth-rate-dependent metabolic efficiency at steady state
-
Kayser, A.; Weber, J.; Hecht, V.; Rinas, U. Metabolic flux analysis of E. coli in glucose-limited continuous culture. I. Growth-rate-dependent metabolic efficiency at steady state. Microbiology 2005, 151, 693-706.
-
(2005)
Microbiology
, vol.151
, pp. 693-706
-
-
Kayser, A.1
Weber, J.2
Hecht, V.3
Rinas, U.4
|