메뉴 건너뛰기




Volumn 98, Issue 21, 2014, Pages 9033-9044

Escherichia coli W shows fast, highly oxidative sucrose metabolism and low acetate formation

Author keywords

Acetate; Escherichia coli W; Sucrose metabolism; Systems biology; TCA cycle flux

Indexed keywords

CARBON; DEPTH PROFILING; ESCHERICHIA COLI; GLUCOSE; GROWTH KINETICS; METABOLITES; STRAIN; SUBSTRATES;

EID: 84920250671     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-014-5956-4     Document Type: Article
Times cited : (23)

References (65)
  • 1
    • 78650900723 scopus 로고    scopus 로고
    • The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli
    • PID: 21208457, COI: 1:CAS:528:DC%2BC3MXosVKltg%3D%3D
    • Archer CT, Kim JF, Jeong H, Park JH, Vickers CE, Lee SY, Nielsen LK (2011) The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli. BMC Genomics 12:9
    • (2011) BMC Genomics , vol.12 , pp. 9
    • Archer, C.T.1    Kim, J.F.2    Jeong, H.3    Park, J.H.4    Vickers, C.E.5    Lee, S.Y.6    Nielsen, L.K.7
  • 2
    • 82955187779 scopus 로고    scopus 로고
    • Deletion of cscR in Escherichia coli W improves growth and poly-3-hydroxyburyrate (PHB) production from sucrose in fed batch culture
    • COI: 1:CAS:528:DC%2BC3MXhsV2msL3M
    • Arifin Y, Sabri S, Sugiarto H, Krömer JO, Vickers CE, Nielsen LK (2011) Deletion of cscR in Escherichia coli W improves growth and poly-3-hydroxyburyrate (PHB) production from sucrose in fed batch culture. J Biotechnol 156:275–278. doi:10.1016/j.jbiotec.2011.07.003
    • (2011) J Biotechnol , vol.156 , pp. 275-278
    • Arifin, Y.1    Sabri, S.2    Sugiarto, H.3    Krömer, J.O.4    Vickers, C.E.5    Nielsen, L.K.6
  • 3
    • 84901392091 scopus 로고    scopus 로고
    • Global gene expression analysis of long-term stationary phase effects in E. coli K12 MG1655
    • PID: 24858919
    • Arunasri K, Adil M, Khan PA, Shivaji S (2014) Global gene expression analysis of long-term stationary phase effects in E. coli K12 MG1655. PLoS ONE 9(5):e96701
    • (2014) PLoS ONE , vol.9 , Issue.5 , pp. e96701
    • Arunasri, K.1    Adil, M.2    Khan, P.A.3    Shivaji, S.4
  • 4
    • 84873799110 scopus 로고
    • Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli
    • Bertani G (1951) Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. J Bacteriol 62:293–300
    • (1951) J Bacteriol , vol.62 , pp. 293-300
    • Bertani, G.1
  • 5
    • 0026444105 scopus 로고
    • Characterization of a chromosomally encoded, non-PTS metabolic pathway for sucrose utilization in Escherichia coli EC3132
    • PID: 1435727, COI: 1:CAS:528:DyaK3sXks1Cmsr4%3D
    • Bockmann J, Heuel H, Lengeler JW (1992) Characterization of a chromosomally encoded, non-PTS metabolic pathway for sucrose utilization in Escherichia coli EC3132. Mol Gen Genet 235:22–32
    • (1992) Mol Gen Genet , vol.235 , pp. 22-32
    • Bockmann, J.1    Heuel, H.2    Lengeler, J.W.3
  • 6
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • PID: 12538238, COI: 1:CAS:528:DC%2BD3sXitlCnsL4%3D
    • Bolstad BM, Irizarry RA, Åstrand M, Speed TP (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19:185–193. doi:10.1093/bioinformatics/19.2.185
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Åstrand, M.3    Speed, T.P.4
  • 7
    • 71149118041 scopus 로고    scopus 로고
    • An insight into the role of phosphotransacetylase (pta) and the acetate/acetyl-CoA node in Escherichia coli
    • Castano-Cerezo S, Pastor JM, Renilla S, Bernal V, Iborra JL, Canovas M (2009) An insight into the role of phosphotransacetylase (pta) and the acetate/acetyl-CoA node in Escherichia coli. Microb Cell Factories 8:54. doi:10.1186/1475-2859-8-54
    • (2009) Microb Cell Factories , vol.8 , pp. 54
    • Castano-Cerezo, S.1    Pastor, J.M.2    Renilla, S.3    Bernal, V.4    Iborra, J.L.5    Canovas, M.6
  • 8
    • 82155175630 scopus 로고    scopus 로고
    • cAMP-CRP co-ordinates the expression of the protein acetylation pathway with central metabolism in Escherichia coli
    • PID: 22059728
    • Castaño-Cerezo S, Bernal V, Blanco-Catalá J, Iborra JL, Cánovas M (2011) cAMP-CRP co-ordinates the expression of the protein acetylation pathway with central metabolism in Escherichia coli. Mol Microbiol 82:1110–1128. doi:10.1111/j.1365-2958.2011.07873.x
    • (2011) Mol Microbiol , vol.82 , pp. 1110-1128
    • Castaño-Cerezo, S.1    Bernal, V.2    Blanco-Catalá, J.3    Iborra, J.L.4    Cánovas, M.5
  • 9
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • PID: 12454643, COI: 1:CAS:528:DC%2BD38XovFyqs7w%3D
    • Churchill GA (2002) Fundamentals of experimental design for cDNA microarrays. Nat Genet 32(Suppl):490–495. doi:10.1038/ng1031
    • (2002) Nat Genet , vol.32 , pp. 490-495
    • Churchill, G.A.1
  • 10
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • da Huang W, Sherman BT, Lempicki RA (2009a) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37(1):1–13. doi:10.1093/nar/gkn923
    • (2009) Nucleic Acids Res , vol.37 , Issue.1 , pp. 1-13
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 11
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • COI: 1:CAS:528:DC%2BD1cXhsFCkurnI
    • da Huang W, Sherman BT, Lempicki RA (2009b) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4(1):44–57. doi:10.1038/nprot.2008.211
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 12
    • 33845626641 scopus 로고    scopus 로고
    • How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria
    • PID: 17158705, COI: 1:CAS:528:DC%2BD2sXmslOisA%3D%3D
    • Deutscher J, Francke C, Postma PW (2006) How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol Mol Biol Rev 70:939–1031. doi:10.1128/MMBR.00024-06
    • (2006) Microbiol Mol Biol Rev , vol.70 , pp. 939-1031
    • Deutscher, J.1    Francke, C.2    Postma, P.W.3
  • 13
    • 0017073612 scopus 로고
    • Energetics of Escherichia coli during aerobic growth in continuous culture
    • PID: 786616, COI: 1:CAS:528:DyaE28XltF2gurY%3D
    • Farmer IS, Jones CW (1976) Energetics of Escherichia coli during aerobic growth in continuous culture. Eur J Biochem 67:115–122
    • (1976) Eur J Biochem , vol.67 , pp. 115-122
    • Farmer, I.S.1    Jones, C.W.2
  • 15
    • 10744225021 scopus 로고    scopus 로고
    • The gene yjcG, cotranscribed with the gene acs, encodes an acetate permease in Escherichia coli
    • PID: 14563880, COI: 1:CAS:528:DC%2BD3sXosV2kt7w%3D
    • Gimenez R, Nunez MF, Badia J, Aguilar J, Baldoma L (2003) The gene yjcG, cotranscribed with the gene acs, encodes an acetate permease in Escherichia coli. J Bacteriol 185:6448–6455. doi:10.1128/JB.185.21.6448-6455.2003
    • (2003) J Bacteriol , vol.185 , pp. 6448-6455
    • Gimenez, R.1    Nunez, M.F.2    Badia, J.3    Aguilar, J.4    Baldoma, L.5
  • 16
    • 0019519975 scopus 로고
    • Growth of Escherichia coli W to high cell concentration by oxygen level linked control of carbon source concentration
    • COI: 1:CAS:528:DyaL3MXktVGju7s%3D
    • Gleiser IE, Bauer S (1981) Growth of Escherichia coli W to high cell concentration by oxygen level linked control of carbon source concentration. Biotechnol Bioeng 23:1015–1021
    • (1981) Biotechnol Bioeng , vol.23 , pp. 1015-1021
    • Gleiser, I.E.1    Bauer, S.2
  • 17
    • 79551584971 scopus 로고    scopus 로고
    • Regulation of intermediary metabolism by protein acetylation
    • PID: 20934340, COI: 1:CAS:528:DC%2BC3MXhsFOrtL0%3D
    • Guan K-L, Xiong Y (2011) Regulation of intermediary metabolism by protein acetylation. Trends Biochem Sci 36:108–116
    • (2011) Trends Biochem Sci , vol.36 , pp. 108-116
    • Guan, K.-L.1    Xiong, Y.2
  • 18
    • 79953317811 scopus 로고    scopus 로고
    • Large-scale 13C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli
    • PID: 21451587
    • Haverkorn van Rijsewijk BR, Nanchen A, Nallet S, Kleijn RJ, Sauer U (2011) Large-scale 13C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli. Mol Syst Biol 7:477. doi:10.1038/msb.2011.9
    • (2011) Mol Syst Biol , vol.7 , pp. 477
    • Haverkorn van Rijsewijk, B.R.1    Nanchen, A.2    Nallet, S.3    Kleijn, R.J.4    Sauer, U.5
  • 19
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • PID: 12169536
    • Huber W, von Heydebreck A, Sültmann H, Poustka A, Vingron M (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18:S96–S104. doi:10.1093/bioinformatics/18.suppl_1.S96
    • (2002) Bioinformatics , vol.18 , pp. S96-S104
    • Huber, W.1    von Heydebreck, A.2    Sültmann, H.3    Poustka, A.4    Vingron, M.5
  • 20
    • 0036778151 scopus 로고    scopus 로고
    • Adaptation of sucrose metabolism in the Escherichia coli wild-type strain EC3132
    • PID: 12218016, COI: 1:CAS:528:DC%2BD38Xnt1ehsb4%3D
    • Jahreis K, Bentler L, Bockmann J, Hans S, Meyer A, Siepelmeyer J, Lengeler JW (2002) Adaptation of sucrose metabolism in the Escherichia coli wild-type strain EC3132. J Bacteriol 184:5307–5316
    • (2002) J Bacteriol , vol.184 , pp. 5307-5316
    • Jahreis, K.1    Bentler, L.2    Bockmann, J.3    Hans, S.4    Meyer, A.5    Siepelmeyer, J.6    Lengeler, J.W.7
  • 21
    • 0034109116 scopus 로고    scopus 로고
    • Another unusual type of citric acid cycle enzyme in Helicobacter pylori: the malate:quinone oxidoreductase
    • Kather B, Stingl K, van der Rest ME, Altendorf K, Molenaar D (2000) Another unusual type of citric acid cycle enzyme in Helicobacter pylori: the malate:quinone oxidoreductase. J Bacteriol 182:3204-3209
    • (2000) J Bacteriol , vol.182 , pp. 3204-3209
    • Kather, B.1    Stingl, K.2    van der Rest, M.E.3    Altendorf, K.4    Molenaar, D.5
  • 22
    • 15844371174 scopus 로고    scopus 로고
    • Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. I. Growth-rate dependent metabolic efficiency at steady state
    • Kayser A, Weber J, Hecht V, Rinas U (2005) Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. I. Growth-rate dependent metabolic efficiency at steady state. Microbiol SGM 151:693–706. doi:10.1099/mic.0.27481-0
    • (2005) Microbiol SGM , vol.151 , pp. 693-706
    • Kayser, A.1    Weber, J.2    Hecht, V.3    Rinas, U.4
  • 23
    • 0028052113 scopus 로고
    • Acetate metabolism by Escherichia coli in high-cell-density fermentation
    • PID: 7993084, COI: 1:CAS:528:DyaK2cXmvFKrtbs%3D
    • Kleman GL, Strohl WR (1994) Acetate metabolism by Escherichia coli in high-cell-density fermentation. Appl Environ Microbiol 60:3952–3958
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3952-3958
    • Kleman, G.L.1    Strohl, W.R.2
  • 24
    • 0031719199 scopus 로고    scopus 로고
    • Growth kinetics of suspended microbial cells: from single-substrate-controlled growth to mixed-substrate kinetics
    • PID: 9729604, COI: 1:STN:280:DyaK1cvgtVWmsw%3D%3D
    • Kovarova-Kovar K, Egli T (1998) Growth kinetics of suspended microbial cells: from single-substrate-controlled growth to mixed-substrate kinetics. Microbiol Mol Biol Rev 62:646–666
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 646-666
    • Kovarova-Kovar, K.1    Egli, T.2
  • 26
    • 0027439904 scopus 로고
    • The isocitrate dehydrogenase phosphorylation cycle: Regulation and enzymology
    • PID: 8381789, COI: 1:CAS:528:DyaK3sXht1Sms7o%3D
    • Laporte DC (1993) The isocitrate dehydrogenase phosphorylation cycle: Regulation and enzymology. J Cell Biochem 51:14–18. doi:10.1002/jcb.240510104
    • (1993) J Cell Biochem , vol.51 , pp. 14-18
    • Laporte, D.C.1
  • 27
    • 39549119605 scopus 로고    scopus 로고
    • Utility of an Escherichia coli strain engineered in the substrate uptake system for improved culture performance at high glucose and cell concentrations: an alternative to fed-batch cultures
    • PID: 17929322, COI: 1:CAS:528:DC%2BD1cXit1Kqsrs%3D
    • Lara AR, Caspeta L, Gosset G, Bolivar F, Ramirez OT (2008) Utility of an Escherichia coli strain engineered in the substrate uptake system for improved culture performance at high glucose and cell concentrations: an alternative to fed-batch cultures. Biotechnol Bioeng 99:893–901. doi:10.1002/bit.21664
    • (2008) Biotechnol Bioeng , vol.99 , pp. 893-901
    • Lara, A.R.1    Caspeta, L.2    Gosset, G.3    Bolivar, F.4    Ramirez, O.T.5
  • 28
    • 0027381022 scopus 로고
    • High cell-density cultivation of Escherichia coli W using sucrose as carbon source
    • COI: 1:CAS:528:DyaK3sXms12isrk%3D
    • Lee SY, Chang HN (1993) High cell-density cultivation of Escherichia coli W using sucrose as carbon source. Biotechnol Lett 15:971–974
    • (1993) Biotechnol Lett , vol.15 , pp. 971-974
    • Lee, S.Y.1    Chang, H.N.2
  • 29
    • 0033955729 scopus 로고    scopus 로고
    • Growth kinetics of Escherichia coli with galactose and several other sugars in carbon-limited chemostat culture
    • PID: 10696473, COI: 1:CAS:528:DC%2BD3cXosFGhsA%3D%3D
    • Lendenmann U, Snozzi M, Egli T (2000) Growth kinetics of Escherichia coli with galactose and several other sugars in carbon-limited chemostat culture. Can J Microbiol 46:72–80
    • (2000) Can J Microbiol , vol.46 , pp. 72-80
    • Lendenmann, U.1    Snozzi, M.2    Egli, T.3
  • 30
    • 0030571222 scopus 로고    scopus 로고
    • Pathway analysis, engineering, and physiological considerations for redirecting central metabolism
    • PID: 18629859, COI: 1:CAS:528:DyaK28XlvFaitLs%3D
    • Liao JC, Hou SY, Chao YP (1996) Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. Biotechnol Bioeng 52:129–140. doi:10.1002/(SICI)1097-0290(19961005)52:1<129::AID-BIT13>3.0.CO;2-J
    • (1996) Biotechnol Bioeng , vol.52 , pp. 129-140
    • Liao, J.C.1    Hou, S.Y.2    Chao, Y.P.3
  • 31
    • 84899742652 scopus 로고    scopus 로고
    • Temporal dynamics of the Saccharopolyspora erythraea phosphoproteome
    • PID: 24615062, COI: 1:CAS:528:DC%2BC2cXntFygsrw%3D
    • Licona-Cassani C, Lim S, Marcellin E, Nielsen LK (2014) Temporal dynamics of the Saccharopolyspora erythraea phosphoproteome. Mol Cell Proteomics 13:1219–1230. doi:10.1074/mcp.M113.033951
    • (2014) Mol Cell Proteomics , vol.13 , pp. 1219-1230
    • Licona-Cassani, C.1    Lim, S.2    Marcellin, E.3    Nielsen, L.K.4
  • 32
    • 18144396807 scopus 로고    scopus 로고
    • Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli
    • PID: 15705577, COI: 1:CAS:528:DC%2BD2MXjtleisbk%3D
    • Liu M, Durfee T, Cabrera JE, Zhao K, Jin DJ, Blattner FR (2005) Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli. J Biol Chem 280:15921–15927. doi:10.1074/jbc.M414050200
    • (2005) J Biol Chem , vol.280 , pp. 15921-15927
    • Liu, M.1    Durfee, T.2    Cabrera, J.E.3    Zhao, K.4    Jin, D.J.5    Blattner, F.R.6
  • 33
    • 0025264582 scopus 로고
    • Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations
    • PID: 2187400, COI: 1:CAS:528:DyaK3cXitleqtb8%3D
    • Luli GW, Strohl WR (1990) Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations. Appl Environ Microbiol 56:1004–1011
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1004-1011
    • Luli, G.W.1    Strohl, W.R.2
  • 34
    • 84885353313 scopus 로고    scopus 로고
    • Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach
    • PID: 24118942, COI: 1:CAS:528:DC%2BC3sXhvVyhtrzF
    • Marcellin E, Licona-Cassani C, Mercer TR, Palfreyman RW, Nielsen LK (2013) Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach. BMC Genomics 14:699. doi:10.1186/1471-2164-14-699
    • (2013) BMC Genomics , vol.14 , pp. 699
    • Marcellin, E.1    Licona-Cassani, C.2    Mercer, T.R.3    Palfreyman, R.W.4    Nielsen, L.K.5
  • 36
    • 13644259156 scopus 로고    scopus 로고
    • The energetic conversion competence of Escherichia coli during aerobic respiration studied by P-31 NMR using a circulating fermentation system
    • PID: 15625321, COI: 1:CAS:528:DC%2BD2MXit1Sku74%3D
    • Noguchi Y, Nakai Y, Shimba N, Toyosaki H, Kawahara Y, Sugimoto S, Suzuki E (2004) The energetic conversion competence of Escherichia coli during aerobic respiration studied by P-31 NMR using a circulating fermentation system. J Biochem Tokyo 136:509–515
    • (2004) J Biochem Tokyo , vol.136 , pp. 509-515
    • Noguchi, Y.1    Nakai, Y.2    Shimba, N.3    Toyosaki, H.4    Kawahara, Y.5    Sugimoto, S.6    Suzuki, E.7
  • 37
    • 0034429815 scopus 로고    scopus 로고
    • The utilisation of glucose/acetate mixtures by Escherichia coli W3110 under aerobic growth conditions
    • O’Beirne D, Hamer G (2000) The utilisation of glucose/acetate mixtures by Escherichia coli W3110 under aerobic growth conditions. Bioprocess Eng 23:375–380. doi:10.1007/s004499900176
    • (2000) Bioprocess Eng , vol.23 , pp. 375-380
    • O’Beirne, D.1    Hamer, G.2
  • 38
    • 79953162662 scopus 로고    scopus 로고
    • Escherichia coli W as a new platform strain for the enhanced production of L-valine by systems metabolic engineering
    • PID: 21191998, COI: 1:CAS:528:DC%2BC3MXjvFSjsrc%3D
    • Park JH, Jang YS, Lee JW, Lee SY (2011) Escherichia coli W as a new platform strain for the enhanced production of L-valine by systems metabolic engineering. Biotechnol Bioeng 108:1140–1147. doi:10.1002/bit.23044
    • (2011) Biotechnol Bioeng , vol.108 , pp. 1140-1147
    • Park, J.H.1    Jang, Y.S.2    Lee, J.W.3    Lee, S.Y.4
  • 39
    • 1842582933 scopus 로고    scopus 로고
    • Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109)
    • PID: 15063611, COI: 1:CAS:528:DC%2BD2cXivVKms7g%3D
    • Phue JN, Shiloach J (2004) Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109). J Biotechnol 109:21–30. doi:10.1016/j.jbiotec.2003.10.038
    • (2004) J Biotechnol , vol.109 , pp. 21-30
    • Phue, J.N.1    Shiloach, J.2
  • 40
    • 43049089438 scopus 로고
    • Maintenance energy of bacteria in growing culture
    • COI: 1:CAS:528:DyaF2MXltVWitb8%3D
    • Pirt SJ (1965) Maintenance energy of bacteria in growing culture. Proc R Soc Lond B Biol 163:224–231
    • (1965) Proc R Soc Lond B Biol , vol.163 , pp. 224-231
    • Pirt, S.J.1
  • 42
    • 0021831859 scopus 로고
    • Mass-culture of Escherichia coli—medium development for low and high-density cultivation of Escherichia coli B/r in minimal and complex media
    • COI: 1:CAS:528:DyaL2MXks12ktbg%3D
    • Reiling HE, Laurila H, Fiechter A (1985) Mass-culture of Escherichia coli—medium development for low and high-density cultivation of Escherichia coli B/r in minimal and complex media. J Biotechnol 2:191–206
    • (1985) J Biotechnol , vol.2 , pp. 191-206
    • Reiling, H.E.1    Laurila, H.2    Fiechter, A.3
  • 43
    • 84857913968 scopus 로고    scopus 로고
    • Acetate scavenging activity in Escherichia coli: interplay of acetyl-CoA synthetase and the PEP-glyoxylate cycle in chemostat cultures
    • PID: 21881893, COI: 1:CAS:528:DC%2BC38Xisl2qsLk%3D
    • Renilla S, Bernal V, Fuhrer T, Castano-Cerezo S, Pastor JM, Iborra JL, Sauer U, Canovas M (2012) Acetate scavenging activity in Escherichia coli: interplay of acetyl-CoA synthetase and the PEP-glyoxylate cycle in chemostat cultures. Appl Microbiol Biotechnol 93:2109–2124. doi:10.1007/s00253-011-3536-4
    • (2012) Appl Microbiol Biotechnol , vol.93 , pp. 2109-2124
    • Renilla, S.1    Bernal, V.2    Fuhrer, T.3    Castano-Cerezo, S.4    Pastor, J.M.5    Iborra, J.L.6    Sauer, U.7    Canovas, M.8
  • 44
    • 56349165295 scopus 로고    scopus 로고
    • An environmental life cycle assessment comparing Australian sugarcane with US corn and UK sugar beet as producers of sugars for fermentation
    • COI: 1:CAS:528:DC%2BD1cXhsVWhtL%2FE
    • Renouf MA, Wegener MK, Nielsen LK (2008) An environmental life cycle assessment comparing Australian sugarcane with US corn and UK sugar beet as producers of sugars for fermentation. Biomass Bioenergy 32:1144–1155. doi:10.1016/J.Biombioe.2008.02.012
    • (2008) Biomass Bioenergy , vol.32 , pp. 1144-1155
    • Renouf, M.A.1    Wegener, M.K.2    Nielsen, L.K.3
  • 46
    • 84871871018 scopus 로고    scopus 로고
    • Molecular control of sucrose utilization in Escherichia coli W, an efficient sucrose-utilizing strain
    • PID: 23124236, COI: 1:CAS:528:DC%2BC3sXkvVGqtLk%3D
    • Sabri S, Nielsen LK, Vickers CE (2013) Molecular control of sucrose utilization in Escherichia coli W, an efficient sucrose-utilizing strain. Appl Environ Microbiol 79:478–487. doi:10.1128/AEM.02544-12
    • (2013) Appl Environ Microbiol , vol.79 , pp. 478-487
    • Sabri, S.1    Nielsen, L.K.2    Vickers, C.E.3
  • 47
    • 0028987643 scopus 로고
    • Active-transport by the Cscb permease in Escherichia coli K-12
    • PID: 7535526, COI: 1:CAS:528:DyaK2MXkvVeiurs%3D
    • Sahin-Toth M, Frillingos S, Lengeler JW, Kaback HR (1995) Active-transport by the Cscb permease in Escherichia coli K-12. Biochem Biophys Res Commun 208:1116–1123
    • (1995) Biochem Biophys Res Commun , vol.208 , pp. 1116-1123
    • Sahin-Toth, M.1    Frillingos, S.2    Lengeler, J.W.3    Kaback, H.R.4
  • 50
    • 61449107655 scopus 로고    scopus 로고
    • Microarray background correction: maximum likelihood estimation for the normal-exponential convolution
    • PID: 19068485
    • Silver JD, Ritchie ME, Smyth GK (2009) Microarray background correction: maximum likelihood estimation for the normal-exponential convolution. Biostatistics 10:352–363. doi:10.1093/biostatistics/kxn042
    • (2009) Biostatistics , vol.10 , pp. 352-363
    • Silver, J.D.1    Ritchie, M.E.2    Smyth, G.K.3
  • 51
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • PID: 14597310, COI: 1:CAS:528:DC%2BD3sXos1Chur4%3D
    • Smyth GK, Speed T (2003) Normalization of cDNA microarray data. Methods 31:265–273. doi:10.1016/S1046-2023(03)00155-5
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 52
    • 0030269978 scopus 로고    scopus 로고
    • Development of a high-expression system for penicillin G acylase based on the recombinant Escherichia coli strain RE3(pKA18)
    • COI: 1:CAS:528:DyaK28XlsFKktLo%3D
    • Sobotkova L, Stepanek V, Plhackova K, Kyslik P (1996) Development of a high-expression system for penicillin G acylase based on the recombinant Escherichia coli strain RE3(pKA18). Enzyme Microb Technol 19:389–397
    • (1996) Enzyme Microb Technol , vol.19 , pp. 389-397
    • Sobotkova, L.1    Stepanek, V.2    Plhackova, K.3    Kyslik, P.4
  • 53
    • 0020479925 scopus 로고
    • Sugar transport by the bacterial phosphotransferase system. The glucose receptors of the Salmonella typhimurium phosphotransferase system
    • Stock JB, Waygood EB, Meadow ND, Postma PW, Roseman S (1982) Sugar transport by the bacterial phosphotransferase system. The glucose receptors of the Salmonella typhimurium phosphotransferase system. J Biol Chem 257:14543–14552
    • (1982) J Biol Chem , vol.257 , pp. 14543-14552
    • Stock, J.B.1    Waygood, E.B.2    Meadow, N.D.3    Postma, P.W.4    Roseman, S.5
  • 54
    • 0015910716 scopus 로고
    • Theoretical study on amount of ATP required for synthesis of microbial cell material
    • COI: 1:CAS:528:DyaE3sXltlChur0%3D
    • Stouthamer AH (1973) Theoretical study on amount of ATP required for synthesis of microbial cell material. A Van Leeuw J Microb 39:545–565
    • (1973) A Van Leeuw J Microb , vol.39 , pp. 545-565
    • Stouthamer, A.H.1
  • 55
    • 84865590210 scopus 로고    scopus 로고
    • Engineering and adaptive evolution of Escherichia coli for D-lactate fermentation reveals GatC as a xylose transporter
    • PID: 22885034, COI: 1:CAS:528:DC%2BC38Xht1SktLjK
    • Utrilla J, Licona-Cassani C, Marcellin E, Gosset G, Nielsen LK, Martinez A (2012) Engineering and adaptive evolution of Escherichia coli for D-lactate fermentation reveals GatC as a xylose transporter. Metab Eng 14:469–476. doi:10.1016/j.ymben.2012.07.007
    • (2012) Metab Eng , vol.14 , pp. 469-476
    • Utrilla, J.1    Licona-Cassani, C.2    Marcellin, E.3    Gosset, G.4    Nielsen, L.K.5    Martinez, A.6
  • 56
    • 33745045462 scopus 로고    scopus 로고
    • + symport by the sucrose permease of Escherichia coli relative to lactose permease
    • PID: 16574149, COI: 1:CAS:528:DC%2BD28XjvVamurw%3D
    • + symport by the sucrose permease of Escherichia coli relative to lactose permease. J Mol Biol 358:1051–1059. doi:10.1016/j.jmb.2006.02.050
    • (2006) J Mol Biol , vol.358 , pp. 1051-1059
    • Vadyvaloo, V.1    Smirnova, I.N.2    Kasho, V.N.3    Kaback, H.R.4
  • 57
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
    • PID: 7986045, COI: 1:CAS:528:DyaK2cXmt1Kis7Y%3D
    • Varma A, Palsson BO (1994) Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl Environ Microbiol 60:3724–3731
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3724-3731
    • Varma, A.1    Palsson, B.O.2
  • 58
    • 12344330424 scopus 로고    scopus 로고
    • limmaGUI: a graphical user interface for linear modeling of microarray data
    • PID: 15297296, COI: 1:CAS:528:DC%2BD2cXhtVOjsr3K
    • Wettenhall JM, Smyth GK (2004) limmaGUI: a graphical user interface for linear modeling of microarray data. Bioinformatics 20:3705–3706. doi:10.1093/bioinformatics/bth449
    • (2004) Bioinformatics , vol.20 , pp. 3705-3706
    • Wettenhall, J.M.1    Smyth, G.K.2
  • 59
    • 0036956758 scopus 로고    scopus 로고
    • Genealogy profiling through strain improvement by using metabolic network analysis: Metabolic flux genealogy of several generations of lysine-producing corynebacteria
    • PID: 12450803, COI: 1:CAS:528:DC%2BD38XptlarsLk%3D
    • Wittmann C, Heinzle E (2002) Genealogy profiling through strain improvement by using metabolic network analysis: Metabolic flux genealogy of several generations of lysine-producing corynebacteria. Appl Environ Microbiol 68:5843–5859. doi:10.1128/aem.68.12.5843-5859.2002
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5843-5859
    • Wittmann, C.1    Heinzle, E.2
  • 60
    • 0031877849 scopus 로고    scopus 로고
    • Poly-(3-hydroxybutyrate) production from whey by high-density cultivation of recombinant Escherichia coli
    • PID: 9720197, COI: 1:CAS:528:DyaK1cXls12gurY%3D
    • Wong HH, Lee SY (1998) Poly-(3-hydroxybutyrate) production from whey by high-density cultivation of recombinant Escherichia coli. Appl Microbiol Biotechnol 50:30–33. doi:10.1007/s002530051252
    • (1998) Appl Microbiol Biotechnol , vol.50 , pp. 30-33
    • Wong, H.H.1    Lee, S.Y.2
  • 61
    • 0141504947 scopus 로고    scopus 로고
    • Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout
    • PID: 12966569
    • Yang C, Hua Q, Baba T, Mori H, Shimizu K (2003) Analysis of Escherichia coli anaplerotic metabolism and its regulation mechanisms from the metabolic responses to altered dilution rates and phosphoenolpyruvate carboxykinase knockout. Biotechnol Bioeng 84:129–144. doi:10.1002/bit.10692
    • (2003) Biotechnol Bioeng , vol.84 , pp. 129-144
    • Yang, C.1    Hua, Q.2    Baba, T.3    Mori, H.4    Shimizu, K.5
  • 62
    • 80051498516 scopus 로고    scopus 로고
    • Catabolic regulation analysis of Escherichia coli and its crp, mlc, mgsA, pgi and ptsG mutants
    • COI: 1:CAS:528:DC%2BC3MXht1WrtrrJ
    • Yao R, Hirose Y, Sarkar D, Nakahigashi K, Ye Q, Shimizu K (2011) Catabolic regulation analysis of Escherichia coli and its crp, mlc, mgsA, pgi and ptsG mutants. Microb Cell Factories 10:67. doi:10.1186/1475-2859-10-67
    • (2011) Microb Cell Factories , vol.10 , pp. 67
    • Yao, R.1    Hirose, Y.2    Sarkar, D.3    Nakahigashi, K.4    Ye, Q.5    Shimizu, K.6
  • 63
    • 54849421513 scopus 로고    scopus 로고
    • Re-engineering Escherichia coli for ethanol production
    • PID: 18773150, COI: 1:CAS:528:DC%2BD1cXht1Ont73I
    • Yomano LP, York SW, Zhou S, Shanmugam KT, Ingram LO (2008) Re-engineering Escherichia coli for ethanol production. Biotechnol Lett 30:2097–2103. doi:10.1007/s10529-008-9821-3
    • (2008) Biotechnol Lett , vol.30 , pp. 2097-2103
    • Yomano, L.P.1    York, S.W.2    Zhou, S.3    Shanmugam, K.T.4    Ingram, L.O.5
  • 64
    • 35649021818 scopus 로고    scopus 로고
    • Production by metabolically engineered Escherichia coli
    • PID: 17874321, COI: 1:CAS:528:DC%2BD2sXhsVCnsbfM
    • Zhang X, Jantama K, Moore JC, Shanmugam KT, Ingram LO (2007) Production by metabolically engineered Escherichia coli. Appl Microbiol Biotechnol 77:355–366. doi:10.1007/s00253-007-1170-y
    • (2007) Appl Microbiol Biotechnol , vol.77 , pp. 355-366
    • Zhang, X.1    Jantama, K.2    Moore, J.C.3    Shanmugam, K.T.4    Ingram, L.O.5
  • 65
    • 28444472789 scopus 로고    scopus 로고
    • Fermentation of 10 % (w/v) sugar to D:(−)-lactate by engineered Escherichia coli B
    • PID: 16328986, COI: 1:CAS:528:DC%2BD2MXht1OqsbjM
    • Zhou S, Yomano LP, Shanmugam KT, Ingram LO (2005) Fermentation of 10 % (w/v) sugar to D:(−)-lactate by engineered Escherichia coli B. Biotechnol Lett 27:1891–1896. doi:10.1007/s10529-005-3899-7
    • (2005) Biotechnol Lett , vol.27 , pp. 1891-1896
    • Zhou, S.1    Yomano, L.P.2    Shanmugam, K.T.3    Ingram, L.O.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.