메뉴 건너뛰기




Volumn 11, Issue 2, 2016, Pages

Discovery of Novel Hepatitis C Virus NS5B Polymerase Inhibitors by Combining Random Forest, Multiple e-Pharmacophore Modeling and Docking

Author keywords

[No Author keywords available]

Indexed keywords

ANTIVIRUS AGENT; HEPATITIS C VIRUS NS5B POLYMERASE INHIBITOR; NONSTRUCTURAL PROTEIN 5B; UNCLASSIFIED DRUG; ENZYME INHIBITOR; NS-5 PROTEIN, HEPATITIS C VIRUS; RNA DIRECTED RNA POLYMERASE; VIRAL PROTEIN;

EID: 84958811904     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0148181     Document Type: Article
Times cited : (50)

References (98)
  • 1
    • 59149085501 scopus 로고    scopus 로고
    • The global burden of hepatitis c
    • PMID 19207969
    • Lavanchy D. The global burden of hepatitis C. Liver Int. 2009; 29: 74-81. doi: 10.1111/j.1478-3231. 2008.01934.x PMID: 19207969.
    • (2009) Liver Int , vol.29 , pp. 74-81
    • Lavanchy, D.1
  • 2
    • 0242623903 scopus 로고    scopus 로고
    • Fact sheet no.164,. Available/. Accessed 10 September 2014
    • WHO. Hepatitis C. Fact sheet no.164, 2014. Available: http://www.who.int/mediacentre/factsheets/fs164/en/. Accessed 10 September 2014.
    • (2014) Hepatitis C
    • WHO1
  • 3
    • 84958830578 scopus 로고    scopus 로고
    • HEP: Available Accessed 17 September 2014
    • HEP: Available: http://www.hepmag.com/drug-list-hepatitisc.shtml. Accessed 17 September 2014.
  • 4
    • 75149151884 scopus 로고    scopus 로고
    • Resistance to direct antiviral agents in patients with hepatitis c virus infection
    • Elsevier Inc. PMID: 20006612
    • Sarrazin C, Zeuzem S. Resistance to Direct Antiviral Agents in Patients With Hepatitis C Virus Infection. Gastroenterology. Elsevier Inc.; 2010; 138: 447-462. doi: 10.1053/j.gastro.2009.11.055 PMID: 20006612.
    • (2010) Gastroenterology , vol.138 , pp. 447-462
    • Sarrazin, C.1    Zeuzem, S.2
  • 5
    • 0030051777 scopus 로고    scopus 로고
    • Identification and properties of the RNA-dependent RNA polymerase of hepatitis c virus
    • PMID: 8598194
    • Behrens SE, Tomei L, De Francesco R. Identification and properties of the RNA-dependent RNA polymerase of hepatitis C virus. EMBO J. 1996; 15: 12-22. PMID: 8598194.
    • (1996) EMBO J , vol.15 , pp. 12-22
    • Behrens, S.E.1    Tomei, L.2    De Francesco, R.3
  • 6
    • 8644265138 scopus 로고    scopus 로고
    • Membrane association of the RNAdependent RNA polymerase is essential for hepatitis c virus RNA replication
    • PMID: 15542678
    • Moradpour D, Brass V, Bieck E, Friebe P, Gosert R, Blum HE, et al. Membrane association of the RNAdependent RNA polymerase is essential for hepatitis C virus RNA replication. J Virol. 2004; 78: 13278-13284. doi: 10.1128/JVI.78.23.13278-13284.2004 PMID: 15542678.
    • (2004) J Virol , vol.78 , pp. 13278-13284
    • Moradpour, D.1    Brass, V.2    Bieck, E.3    Friebe, P.4    Gosert, R.5    Blum, H.E.6
  • 7
    • 4944250098 scopus 로고    scopus 로고
    • Hepatitis c: What is the best treatment?
    • PMID: 15357860
    • Dillon JF. Hepatitis C: What is the best treatment? J Viral Hepat. 2004; 11 Suppl 1: 23-27. doi: 10.1111/j.1365-2893.2004.00573.x PMID: 15357860.
    • (2004) J Viral Hepat , vol.11 , pp. 23-27
    • Dillon, J.F.1
  • 8
    • 84894655316 scopus 로고    scopus 로고
    • Accounting for target flexibility and water molecules by docking to ensembles of target structures: The hcv ns5b palm site i inhibitors case study
    • PMID: 23952658
    • Barreca ML, Iraci N, Manfroni G, Gaetani R, Guercini C, Sabatini S, et al. Accounting for target flexibility and water molecules by docking to ensembles of target structures: The HCV NS5B palm site i inhibitors case study. J Chem Inf Model. 2014; 54: 481-497. doi: 10.1021/ci400367m PMID: 23952658.
    • (2014) J Chem Inf Model , vol.54 , pp. 481-497
    • Barreca, M.L.1    Iraci, N.2    Manfroni, G.3    Gaetani, R.4    Guercini, C.5    Sabatini, S.6
  • 9
    • 0033571463 scopus 로고    scopus 로고
    • Crystal structure of the RNA-dependent RNA polymerase of hepatitis c virus
    • PMID: 10574802
    • Ago H, Adachi T, Yoshida A, Yamamoto M, Habuka N, Yatsunami K, et al. Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus. Structure. 1999; 7: 1417-1426. PMID: 10574802.
    • (1999) Structure , vol.7 , pp. 1417-1426
    • Ago, H.1    Adachi, T.2    Yoshida, A.3    Yamamoto, M.4    Habuka, N.5    Yatsunami, K.6
  • 10
    • 0036120573 scopus 로고    scopus 로고
    • Structural analysis of the hepatitis c virus RNA polymerase in complex with ribonucleotides
    • PMID: 11884572
    • Bressanelli S, Tomei L, Rey FA, De Francesco R. Structural analysis of the hepatitis C virus RNA polymerase in complex with ribonucleotides. J Virol. 2002; 76: 3482-3492. doi: 10.1128/JVI.76.7.3482-3492.2002 PMID: 11884572.
    • (2002) J Virol , vol.76 , pp. 3482-3492
    • Bressanelli, S.1    Tomei, L.2    Rey, F.A.3    De Francesco, R.4
  • 11
    • 0032876683 scopus 로고    scopus 로고
    • Crystal structure of the RNAdependent RNA polymerase from hepatitis c virus reveals a fully encircled active site
    • PMID: 10504728
    • Lesburg CA, Cable MB, Ferrari E, Hong Z, Mannarino AF, Weber PC. Crystal structure of the RNAdependent RNA polymerase from hepatitis C virus reveals a fully encircled active site. Nat Struct Biol. 1999; 6: 937-943. doi: 10.1038/13305 PMID: 10504728.
    • (1999) Nat Struct Biol , vol.6 , pp. 937-943
    • Lesburg, C.A.1    Cable, M.B.2    Ferrari, E.3    Hong, Z.4    Mannarino, A.F.5    Weber, P.C.6
  • 12
    • 84858722318 scopus 로고    scopus 로고
    • Nucleoside, nucleotide, and non-nucleoside inhibitors of hepatitis c virus ns5b RNA-dependent RNA-polymerase
    • PMID: 22185586
    • Sofia MJ, Chang W, Furman PA, Mosley RT, Ross BS. Nucleoside, nucleotide, and non-nucleoside inhibitors of hepatitis C virus NS5B RNA-dependent RNA-polymerase. Journal of Medicinal Chemistry. 2012. pp. 2481-2531. doi: 10.1021/jm201384j PMID: 22185586.
    • (2012) Journal of Medicinal Chemistry , pp. 2481-2531
    • Sofia, M.J.1    Chang, W.2    Furman, P.A.3    Mosley, R.T.4    Ross, B.S.5
  • 13
    • 79959802300 scopus 로고    scopus 로고
    • Allosteric inhibition of the hepatitis c virus ns5b polymerase: In silico strategies for drug discovery and development
    • PMID: 21707403
    • Barreca ML, Iraci N, Manfroni G, Cecchetti V. Allosteric inhibition of the hepatitis C virus NS5B polymerase: in silico strategies for drug discovery and development. Future Med Chem. 2011; 3: 1027-1055. doi: 10.4155/fmc.11.53 PMID: 21707403.
    • (2011) Future Med Chem , vol.3 , pp. 1027-1055
    • Barreca, M.L.1    Iraci, N.2    Manfroni, G.3    Cecchetti, V.4
  • 14
    • 39449130206 scopus 로고    scopus 로고
    • 3d qsar and molecular docking studies of benzimidazole derivatives as hepatitis c virus ns5b polymerase inhibitors
    • PMID: 18076152
    • Patel PD, Patel MR, Kaushik-Basu N, Talele TT. 3D QSAR and molecular docking studies of benzimidazole derivatives as hepatitis C virus NS5B polymerase inhibitors. J Chem Inf Model. 2008; 48: 42-55. doi: 10.1021/ci700266z PMID: 18076152.
    • (2008) J Chem Inf Model , vol.48 , pp. 42-55
    • Patel, P.D.1    Patel, M.R.2    Kaushik-Basu, N.3    Talele, T.T.4
  • 15
    • 47349093653 scopus 로고    scopus 로고
    • Non-nucleoside inhibitors of ns5b polymerase binding to allosteric sites: 3d-qsar and molecular docking studies
    • PMID: 18537623
    • Cao H, Cao R, Zhang H, Zheng X, Gao D. Non-nucleoside inhibitors of NS5B polymerase binding to allosteric sites: 3D-QSAR and molecular docking studies. Curr Med Chem. 2008; 15: 1462-1477. doi: 10.2174/092986708784638906 PMID: 18537623.
    • (2008) Curr Med Chem , vol.15 , pp. 1462-1477
    • Cao, H.1    Cao, R.2    Zhang, H.3    Zheng, X.4    Gao, D.5
  • 16
    • 68949085097 scopus 로고    scopus 로고
    • Discovery of 4h-pyrazolo[1,5-A]pyrimidin-7-ones as potent inhibitors of hepatitis c virus polymerase
    • Elsevier Ltd PMID: 19682898
    • Deng Y, Shipps GW, Wang T, Popovici-Muller J, Rosner KE, Siddiqui MA, et al. Discovery of 4H-pyrazolo[ 1,5-A]pyrimidin-7-ones as potent inhibitors of hepatitis C virus polymerase. Bioorg Med Chem Lett. Elsevier Ltd; 2009; 19: 5363-5367. doi: 10.1016/j.bmcl.2009.07.124 PMID: 19682898.
    • (2009) Bioorg Med Chem Lett , vol.19 , pp. 5363-5367
    • Deng, Y.1    Shipps, G.W.2    Wang, T.3    Popovici-Muller, J.4    Rosner, K.E.5    Siddiqui, M.A.6
  • 17
    • 77954214956 scopus 로고    scopus 로고
    • Structure-based virtual screening synthesis and sar of novel inhibitors of hepatitis c virus ns5b polymerase
    • Elsevier Ltd PMID: 20627595
    • Talele TT, Arora P, Kulkarni SS, Patel MR, Singh S, Chudayeu M, et al. Structure-based virtual screening, synthesis and SAR of novel inhibitors of hepatitis C virus NS5B polymerase. Bioorg Med Chem. Elsevier Ltd; 2010; 18: 4630-4638. doi: 10.1016/j.bmc.2010.05.030 PMID: 20627595.
    • (2010) Bioorg Med Chem , vol.18 , pp. 4630-4638
    • Talele, T.T.1    Arora, P.2    Kulkarni, S.S.3    Patel, M.R.4    Singh, S.5    Chudayeu, M.6
  • 18
    • 33749249403 scopus 로고    scopus 로고
    • Structure-based design of a novel thiazolone scaffold as hcv ns5b polymerase allosteric inhibitors
    • PMID: 16934455
    • Yan S, Appleby T, Larson G, Wu JZ, Hamatake R, Hong Z, et al. Structure-based design of a novel thiazolone scaffold as HCV NS5B polymerase allosteric inhibitors. Bioorganic Med Chem Lett. 2006; 16: 5888-5891. doi: 10.1016/j.bmcl.2006.08.056 PMID: 16934455.
    • (2006) Bioorganic Med Chem Lett , vol.16 , pp. 5888-5891
    • Yan, S.1    Appleby, T.2    Larson, G.3    Wu, J.Z.4    Hamatake, R.5    Hong, Z.6
  • 19
    • 33845619375 scopus 로고    scopus 로고
    • Novel thiazolones as hcv ns5b polymerase allosteric inhibitors: Further designs sar and x-ray complex structure
    • PMID: 17049849
    • Yan S, Larson G, Wu JZ, Appleby T, Ding Y, Hamatake R, et al. Novel thiazolones as HCV NS5B polymerase allosteric inhibitors: Further designs, SAR, and X-ray complex structure. Bioorganic Med Chem Lett. 2007; 17: 63-67. doi: 10.1016/j.bmcl.2006.09.095 PMID: 17049849.
    • (2007) Bioorganic Med Chem Lett , vol.17 , pp. 63-67
    • Yan, S.1    Larson, G.2    Wu, J.Z.3    Appleby, T.4    Ding, Y.5    Hamatake, R.6
  • 20
    • 33847612920 scopus 로고    scopus 로고
    • Thiazolone-Acylsulfonamides as novel hcv ns5b polymerase allosteric inhibitors: Convergence of structure-based drug design and xray crystallographic study
    • Elsevier Ltd PMID 17276060
    • Yan S, Appleby T, Larson G, Wu JZ, Hamatake RK, Hong Z, et al. Thiazolone-Acylsulfonamides as novel HCV NS5B polymerase allosteric inhibitors: Convergence of structure-based drug design and Xray crystallographic study. Bioorganic Med Chem Lett. Elsevier Ltd; 2007; 17: 1991-1995. doi: 10. 1016/j.bmcl.2007.01.024 PMID: 17276060.
    • (2007) Bioorganic Med Chem Lett , vol.17 , pp. 1991-1995
    • Yan, S.1    Appleby, T.2    Larson, G.3    Wu, J.Z.4    Hamatake, R.K.5    Hong, Z.6
  • 21
    • 77955419735 scopus 로고    scopus 로고
    • Cyclic amide bioisosterism: Strategic application to the design and synthesis of hcv ns5b polymerase inhibitors
    • Elsevier Ltd PMID: 20584604
    • Yang H, Hendricks RT, Arora N, Nitzan D, Yee C, Lucas MC, et al. Cyclic amide bioisosterism: Strategic application to the design and synthesis of HCV NS5B polymerase inhibitors. Bioorganic Med Chem Lett. Elsevier Ltd; 2010; 20: 4614-4619. doi: 10.1016/j.bmcl.2010.06.008 PMID: 20584604.
    • (2010) Bioorganic Med Chem Lett , vol.20 , pp. 4614-4619
    • Yang, H.1    Hendricks, R.T.2    Arora, N.3    Nitzan, D.4    Yee, C.5    Lucas, M.C.6
  • 22
    • 34250364818 scopus 로고    scopus 로고
    • Discovery of novel dialkyl substituted thiophene inhibitors of hcv by in silico screening of the ns5b rdrp
    • PMID: 17512198
    • Louise-May S, Yang W, Nie X, Liu D, Deshpande MS, Phadke AS, et al. Discovery of novel dialkyl substituted thiophene inhibitors of HCV by in silico screening of the NS5B RdRp. Bioorganic Med Chem Lett. 2007; 17: 3905-3909. doi: 10.1016/j.bmcl.2007.04.103 PMID: 17512198.
    • (2007) Bioorganic Med Chem Lett , vol.17 , pp. 3905-3909
    • Louise-May, S.1    Yang, W.2    Nie, X.3    Liu, D.4    Deshpande, M.S.5    Phadke, A.S.6
  • 23
    • 77953357109 scopus 로고    scopus 로고
    • A cell-based reporter assay for inhibitor screening of hepatitis c virus RNA-dependent RNA polymerase
    • Elsevier Inc. PMID: 20382106
    • Lee JC, Tseng C kai, Chen KJ, Huang KJ, Lin CK, Lin YT. A cell-based reporter assay for inhibitor screening of hepatitis C virus RNA-dependent RNA polymerase. Anal Biochem. Elsevier Inc.; 2010; 403: 52-62. doi: 10.1016/j.ab.2010.04.004 PMID: 20382106.
    • (2010) Anal Biochem , vol.403 , pp. 52-62
    • Lee, J.C.1    Tseng, C.2    Kai Chen, K.J.3    Huang, K.J.4    Lin, C.K.5    Lin, Y.T.6
  • 24
    • 44449103763 scopus 로고    scopus 로고
    • Docking ligands into flexible and solvated macromolecules. 2. Development and application of fitted 1.5 to the virtual screening of potential hcv polymerase inhibitors
    • PMID: 18341269
    • Corbeil CR, Englebienne P, Yannopoulos CG, Chan L, Das SK, Bilimoria D, et al. Docking ligands into flexible and solvated macromolecules. 2. Development and application of FITTED 1.5 to the virtual screening of potential HCV polymerase inhibitors. J Chem Inf Model. 2008; 48: 902-909. doi: 10.1021/ci700398h PMID: 18341269.
    • (2008) J Chem Inf Model , vol.48 , pp. 902-909
    • Corbeil, C.R.1    Englebienne, P.2    Yannopoulos, C.G.3    Chan, L.4    Das, S.K.5    Bilimoria, D.6
  • 25
    • 77951993951 scopus 로고    scopus 로고
    • Combining 3-d quantitative structureactivity relationship with ligand based and structure based alignment procedures for in silico screening of new hepatitis c virus ns5b polymerase inhibitors
    • PMID 20225870
    • Musmuca I, Caroli A, Mai A, Kaushik-Basu N, Arora P, Ragno R. Combining 3-D quantitative structureactivity relationship with ligand based and structure based alignment procedures for in silico screening of new hepatitis c virus NS5B polymerase inhibitors. J Chem Inf Model. 2010; 50: 662-676. doi: 10. 1021/ci9004749 PMID: 20225870.
    • (2010) J Chem Inf Model , vol.50 , pp. 662-676
    • Musmuca, I.1    Caroli, A.2    Mai, A.3    Kaushik-Basu, N.4    Arora, P.5    Ragno, R.6
  • 26
    • 35148878798 scopus 로고    scopus 로고
    • Identification of a series of novel derivatives as potent hcv inhibitors by a ligand-based virtual screening optimized procedure
    • PMID: 17869118
    • Melagraki G, Afantitis A, Sarimveis H, Koutentis P a, Markopoulos J, Igglessi-Markopoulou O. Identification of a series of novel derivatives as potent HCV inhibitors by a ligand-based virtual screening optimized procedure. Bioorganic Med Chem. 2007; 15: 7237-7247. doi: 10.1016/j.bmc.2007.08.036 PMID: 17869118.
    • (2007) Bioorganic Med Chem , vol.15 , pp. 7237-7247
    • Melagraki, G.1    Afantitis, A.2    Sarimveis, H.3    Koutentis, P.A.4    Markopoulos, J.5    Igglessi-Markopoulou, O.6
  • 27
    • 80051594196 scopus 로고    scopus 로고
    • Qsar study of c allosteric binding site of hcv ns5b polymerase inhibitors by support vector machine
    • PMID: 20931278
    • Pourbasheer E, Riahi S, Ganjali MR, Norouzi P. QSAR study of C allosteric binding site of HCV NS5B polymerase inhibitors by support vector machine. Mol Divers. 2011; 15: 645-653. doi: 10.1007/s11030-010-9283-0 PMID: 20931278.
    • (2011) Mol Divers , vol.15 , pp. 645-653
    • Pourbasheer, E.1    Riahi, S.2    Ganjali, M.R.3    Norouzi, P.4
  • 28
    • 47149118318 scopus 로고    scopus 로고
    • Structure-based design synthesis, and biological evaluation of 1,1-dioxoisothiazole and benzo[b]thiophene-1,1-dioxide derivatives as novel inhibitors of hepatitis c virus ns5b polymerase
    • PMID: 18554907
    • Kim SH, Tran MT, Ruebsam F, Xiang AX, Ayida B, McGuire H, et al. Structure-based design, synthesis, and biological evaluation of 1,1-dioxoisothiazole and benzo[b]thiophene-1,1-dioxide derivatives as novel inhibitors of hepatitis C virus NS5B polymerase. Bioorg Med Chem Lett. 2008; 18: 4181-4185. doi: 10.1016/j.bmcl.2008.05.083 PMID: 18554907.
    • (2008) Bioorg Med Chem Lett , vol.18 , pp. 4181-4185
    • Kim, S.H.1    Tran, M.T.2    Ruebsam, F.3    Xiang, A.X.4    Ayida, B.5    McGuire, H.6
  • 29
    • 71049181073 scopus 로고    scopus 로고
    • Discovery of tricyclic 56-dihydro-1h-pyridin-2-ones as novel potent and orally bioavailable inhibitors of hcv ns5b polymerase
    • Elsevier Ltd PMID: 19818610
    • Ruebsam F, Murphy DE, Tran C V, Li LS, Zhao J, Dragovich PS, et al. Discovery of tricyclic 5,6-dihydro-1H-pyridin-2-ones as novel, potent, and orally bioavailable inhibitors of HCV NS5B polymerase. Bioorganic Med Chem Lett. Elsevier Ltd; 2009; 19: 6404-6412. doi: 10.1016/j.bmcl.2009.09.045 PMID: 19818610.
    • (2009) Bioorganic Med Chem Lett , vol.19 , pp. 6404-6412
    • Ruebsam, F.1    Murphy, D.E.2    Tran, C.V.3    Li, L.S.4    Zhao, J.5    Dragovich, P.S.6
  • 30
    • 69949092178 scopus 로고    scopus 로고
    • Non-nucleoside inhibitors of hcv polymerase ns5b. Part 4: Structure-based design synthesis, and biological evaluation of benzo[d]isothiazole-1,1-dioxides
    • PMID: 19709881
    • De Vicente J, Hendricks RT, Smith DB, Fell JB, Fischer J, Spencer SR, et al. Non-nucleoside inhibitors of HCV polymerase NS5B. Part 4: Structure-based design, synthesis, and biological evaluation of benzo[d]isothiazole-1,1-dioxides. Bioorganic Med Chem Lett. Elsevier Ltd; 2009; 19: 5652-5656. doi: 10.1016/j.bmcl.2009.08.022 PMID: 19709881.
    • (2009) Bioorganic Med Chem Lett. Elsevier Ltd , vol.19 , pp. 5652-5656
    • De Vicente, J.1    Hendricks, R.T.2    Smith, D.B.3    Fell, J.B.4    Fischer, J.5    Spencer, S.R.6
  • 31
    • 67650763062 scopus 로고    scopus 로고
    • Structurebased design of a benzodiazepine scaffold yields a potent allosteric inhibitor of hepatitis c ns5b RNA polymerase
    • PMID: 19507864
    • Vandyck K, Cummings MD, Nyanguile O, Boutton CW, Vendeville S, McGowan D, et al. Structurebased design of a benzodiazepine scaffold yields a potent allosteric inhibitor of hepatitis C NS5B RNA polymerase. J Med Chem. 2009; 52: 4099-4102. doi: 10.1021/jm9005548 PMID: 19507864.
    • (2009) J Med Chem , vol.52 , pp. 4099-4102
    • Vandyck, K.1    Cummings, M.D.2    Nyanguile, O.3    Boutton, C.W.4    Vendeville, S.5    McGowan, D.6
  • 32
    • 64349084266 scopus 로고    scopus 로고
    • Identification of novel inhibitors of hcv RNAdependent RNA polymerase by pharmacophore-based virtual screening and in vitro evaluation
    • Elsevier Ltd PMID: 19332375
    • Ryu K, Kim ND, Choi S Il, Han CK, Yoon JH, No KT, et al. Identification of novel inhibitors of HCV RNAdependent RNA polymerase by pharmacophore-based virtual screening and in vitro evaluation. Bioorg Med Chem. Elsevier Ltd; 2009; 17: 2975-2982. doi: 10.1016/j.bmc.2009.03.024 PMID: 19332375.
    • (2009) Bioorg Med Chem , vol.17 , pp. 2975-2982
    • Ryu, K.1    Kim, N.D.2    Choi, I.I.S.3    Han, C.K.4    Yoon, J.H.5    No, K.T.6
  • 33
    • 84856230789 scopus 로고    scopus 로고
    • 3d qsar knn-mfa studies on thiouracil derivatives as hepatitis c virus inhibitors
    • Patil VM, Gupta SP, Samanta S, Masand N. 3D QSAR kNN-MFA studies on thiouracil derivatives as hepatitis C virus inhibitors. Med Chem Res. 2011; 20: 1616-1621. doi: 10.1007/s00044-010-9435-x
    • (2011) Med Chem Res , vol.20 , pp. 1616-1621
    • Patil, V.M.1    Gupta, S.P.2    Samanta, S.3    Masand, N.4
  • 34
    • 84894679841 scopus 로고    scopus 로고
    • Multiple e-pharmacophore modeling, 3d-qsar, and high-throughput virtual screening of hepatitis c virus ns5b polymerase inhibitors
    • PMID: 24460140
    • Therese PJ, Manvar D, Kondepudi S, Battu MB, Sriram D, Basu A, et al. Multiple e-pharmacophore modeling, 3D-QSAR, and high-throughput virtual screening of hepatitis C virus NS5B polymerase inhibitors. J Chem Inf Model. 2014; 54: 539-552. doi: 10.1021/ci400644r PMID: 24460140.
    • (2014) J Chem Inf Model , vol.54 , pp. 539-552
    • Therese, P.J.1    Manvar, D.2    Kondepudi, S.3    Battu, M.B.4    Sriram, D.5    Basu, A.6
  • 35
    • 79959606593 scopus 로고    scopus 로고
    • Prediction of hepatitis c virus non-structural proteins 5b polymerase inhibitors using machine learning methods
    • Wei L, Ying X. Prediction of Hepatitis C Virus Non-Structural Proteins 5B Polymerase Inhibitors Using Machine Learning Methods. Acta Phys-Chim Sin. 2011; 27: 1407-1416.
    • (2011) Acta Phys-Chim Sin , vol.27 , pp. 1407-1416
    • Wei, L.1    Ying, X.2
  • 36
    • 84863826381 scopus 로고    scopus 로고
    • Discovery of substituted n-phenylbenzenesulphonamides as a novel class of non-nucleoside hepatitis c virus polymerase inhibitors
    • Elsevier B.V. PMID: 22580131
    • May MM, Brohm D, Harrenga A, Marquardt T, Riedl B, Kreuter J, et al. Discovery of substituted N-phenylbenzenesulphonamides as a novel class of non-nucleoside hepatitis C virus polymerase inhibitors. Antiviral Res. Elsevier B.V.; 2012; 95: 182-191. doi: 10.1016/j.antiviral.2012.04.008 PMID: 22580131.
    • (2012) Antiviral Res , vol.95 , pp. 182-191
    • May, M.M.1    Brohm, D.2    Harrenga, A.3    Marquardt, T.4    Riedl, B.5    Kreuter, J.6
  • 37
    • 79961171672 scopus 로고    scopus 로고
    • Recent advances in drug discovery of benzothiadiazine and related analogs as hcv ns5b polymerase inhibitors
    • Elsevier Ltd PMID: 21798747
    • Das D, Hong J, Chen S-H, Wang G, Beigelman L, Seiwert SD, et al. Recent advances in drug discovery of benzothiadiazine and related analogs as HCV NS5B polymerase inhibitors. Bioorg Med Chem. Elsevier Ltd; 2011; 19: 4690-4703. doi: 10.1016/j.bmc.2011.06.079 PMID: 21798747.
    • (2011) Bioorg Med Chem , vol.19 , pp. 4690-4703
    • Das, D.1    Hong, J.2    Chen, S.-H.3    Wang, G.4    Beigelman, L.5    Seiwert, S.D.6
  • 38
    • 84891496098 scopus 로고    scopus 로고
    • Optimization of potency and pharmacokinetics of tricyclic indole derived inhibitors of hcv ns5b polymerase. Identification of ester prodrugs with improved oral pharmacokinetics
    • Elsevier Ltd PMID: 24275348
    • Venkatraman S, Velazquez F, Gavalas S, Wu W, Chen KX, Nair AG, et al. Optimization of potency and pharmacokinetics of tricyclic indole derived inhibitors of HCV NS5B polymerase. Identification of ester prodrugs with improved oral pharmacokinetics. Bioorganic Med Chem. Elsevier Ltd; 2014; 22: 447-458. doi: 10.1016/j.bmc.2013.11.007 PMID: 24275348.
    • (2014) Bioorganic Med Chem , vol.22 , pp. 447-458
    • Venkatraman, S.1    Velazquez, F.2    Gavalas, S.3    Wu, W.4    Chen, K.X.5    Nair, A.G.6
  • 39
    • 84876105159 scopus 로고    scopus 로고
    • Discovery of a novel series of non-nucleoside thumb pocket 2 hcv ns5b polymerase inhibitors
    • Elsevier Ltd PMID: 23545108
    • Stammers T a, Coulombe R, Rancourt J, Thavonekham B, Fazal G, Goulet S, et al. Discovery of a novel series of non-nucleoside thumb pocket 2 HCV NS5B polymerase inhibitors. Bioorganic Med Chem Lett. Elsevier Ltd; 2013; 23: 2585-2589. doi: 10.1016/j.bmcl.2013.02.110 PMID: 23545108.
    • (2013) Bioorganic Med Chem Lett , vol.23 , pp. 2585-2589
    • Stammers, T.A.1    Coulombe, R.2    Rancourt, J.3    Thavonekham, B.4    Fazal, G.5    Goulet, S.6
  • 40
    • 84878114760 scopus 로고    scopus 로고
    • Aryl uracil inhibitors of hepatitis c virus ns5b polymerase: Synthesis and characterization of analogs with a fused 5,6-bicyclic ring motif
    • Elsevier Ltd PMID 23664214
    • Krueger a C, Randolph JT, DeGoey D a, Donner PL, Flentge C a, Hutchinson DK, et al. Aryl uracil inhibitors of hepatitis C virus NS5B polymerase: synthesis and characterization of analogs with a fused 5,6-bicyclic ring motif. Bioorg Med Chem Lett. Elsevier Ltd; 2013; 23: 3487-3490. doi: 10.1016/j.bmcl. 2013.04.057 PMID: 23664214.
    • (2013) Bioorg Med Chem Lett , vol.23 , pp. 3487-3490
    • Kruegera, C.1    Randolph, J.T.2    DeGoey, D.A.3    Donner, P.L.4    Flentge, C.A.5    Hutchinson, D.K.6
  • 41
    • 84879412960 scopus 로고    scopus 로고
    • Structure-based design of novel hcv ns5b thumb pocket 2 allosteric inhibitors with submicromolar gt1 replicon potency: Discovery of a quinazolinone chemotype
    • Elsevier Ltd PMID: 23768906
    • Beaulieu PL, Coulombe R, Duan J, Fazal G, Godbout C, Hucke O, et al. Structure-based design of novel HCV NS5B thumb pocket 2 allosteric inhibitors with submicromolar gt1 replicon potency: Discovery of a quinazolinone chemotype. Bioorganic Med Chem Lett. Elsevier Ltd; 2013; 23: 4132-4140. doi: 10.1016/j.bmcl.2013.05.037 PMID: 23768906.
    • (2013) Bioorganic Med Chem Lett , vol.23 , pp. 4132-4140
    • Beaulieu, P.L.1    Coulombe, R.2    Duan, J.3    Fazal, G.4    Godbout, C.5    Hucke, O.6
  • 42
    • 84879692873 scopus 로고    scopus 로고
    • High potency improvements to weak aryl uracil hcv polymerase inhibitor leads
    • Elsevier Ltd PMID: 23791079
    • Donner P, Randolph JT, Huang P, Wagner R, Maring C, Lim BH, et al. High potency improvements to weak aryl uracil HCV polymerase inhibitor leads. Bioorg Med Chem Lett. Elsevier Ltd; 2013; 23: 4367-4369. doi: 10.1016/j.bmcl.2013.05.078 PMID: 23791079.
    • (2013) Bioorg Med Chem Lett , vol.23 , pp. 4367-4369
    • Donner, P.1    Randolph, J.T.2    Huang, P.3    Wagner, R.4    Maring, C.5    Lim, B.H.6
  • 43
    • 84888861274 scopus 로고    scopus 로고
    • Anthranilic acidbased thumb pocket 2 hcv ns5b polymerase inhibitors with sub-micromolar potency in the cellbased replicon assay
    • Elsevier Ltd PMID: 24176401
    • Stammers T a, Coulombe R, Duplessis M, Fazal G, Gagnon A, Garneau M, et al. Anthranilic acidbased Thumb Pocket 2 HCV NS5B polymerase inhibitors with sub-micromolar potency in the cellbased replicon assay. Bioorganic Med Chem Lett. Elsevier Ltd; 2013; 23: 6879-6885. doi: 10.1016/j. bmcl.2013.09.102 PMID: 24176401.
    • (2013) Bioorganic Med Chem Lett , vol.23 , pp. 6879-6885
    • Stammers, T.A.1    Coulombe, R.2    Duplessis, M.3    Fazal, G.4    Gagnon, A.5    Garneau, M.6
  • 44
    • 84896270278 scopus 로고    scopus 로고
    • Discovery of a potent boronic acid derived inhibitor of the hcv RNA-dependent RNA polymerase
    • PMID: 23672667
    • Maynard A, Crosby RM, Ellis B, Hamatake R, Hong Z, Johns BA, et al. Discovery of a potent boronic acid derived inhibitor of the HCV RNA-dependent RNA polymerase. J Med Chem. 2014; 57: 1902-1913. doi: 10.1021/jm400317w PMID: 23672667.
    • (2014) J Med Chem , vol.57 , pp. 1902-1913
    • Maynard, A.1    Crosby, R.M.2    Ellis, B.3    Hamatake, R.4    Hong, Z.5    Johns, B.A.6
  • 45
    • 84888858768 scopus 로고    scopus 로고
    • Discovery of an irreversible hcv ns5b polymerase inhibitor
    • Elsevier Ltd PMID: 24252545
    • Zeng Q, Nair AG, Rosenblum SB, Huang HC, Lesburg C a, Jiang Y, et al. Discovery of an irreversible HCV NS5B polymerase inhibitor. Bioorganic Med Chem Lett. Elsevier Ltd; 2013; 23: 6585-6587. doi: 10.1016/j.bmcl.2013.10.060 PMID: 24252545.
    • (2013) Bioorganic Med Chem Lett , vol.23 , pp. 6585-6587
    • Zeng, Q.1    Nair, A.G.2    Rosenblum, S.B.3    Huang, H.C.4    Lesburg, C.A.5    Jiang, Y.6
  • 46
    • 80052771330 scopus 로고    scopus 로고
    • The synthesis of novel heteroaryl-fused 7, 8,9,10-tetrahydro-6h-Azepino [1,2-A] indoles, 4-oxo-2,3-dihydro-1h-[1,4]diazepino[1,7-A]indoles and 1,2,4,5-tetrahydro-[1,4]oxazepino[4,5-A]indoles. Effective inhibitors of hcv ns5b polymerase
    • PMID: 21800000
    • Ding M, He F, Poss MA, Rigat KL, Wang Y, Roberts SB, et al. The synthesis of novel heteroaryl-fused 7,8,9,10-tetrahydro-6H-Azepino [1,2-A] indoles, 4-oxo-2,3-dihydro-1H-[1,4]diazepino[1,7-A]indoles and 1,2,4,5-tetrahydro-[1,4]oxazepino[4,5-A]indoles. Effective inhibitors of HCV NS5B polymerase. Org Biomol Chem. 2011; 9: 6654-6662. doi: 10.1039/c1ob05525a PMID: 21800000.
    • (2011) Org Biomol Chem , vol.9 , pp. 6654-6662
    • Ding, M.1    He, F.2    Poss, M.A.3    Rigat, K.L.4    Wang, Y.5    Roberts, S.B.6
  • 47
    • 84860726440 scopus 로고    scopus 로고
    • Structure-based macrocyclization yields hepatitis c virus ns5b inhibitors with improved binding affinities and pharmacokinetic properties
    • PMID: 22473861
    • Cummings MD, Lin TI, Hu L, Tahri A, McGowan D, Amssoms K, et al. Structure-based macrocyclization yields hepatitis C virus NS5B inhibitors with improved binding affinities and pharmacokinetic properties. Angew Chemie-Int Ed. 2012; 51: 4637-4640. doi: 10.1002/anie.201200110 PMID: 22473861.
    • (2012) Angew Chemie-Int Ed , vol.51 , pp. 4637-4640
    • Cummings, M.D.1    Lin, T.I.2    Hu, L.3    Tahri, A.4    McGowan, D.5    Amssoms, K.6
  • 48
    • 33846108633 scopus 로고    scopus 로고
    • Bindingdb: A web-Accessible database of experimentally determined protein-ligand binding affinities
    • PMID: 17145705
    • Liu T, Lin Y, Wen X, Jorissen RN, Gilson MK. BindingDB: A web-Accessible database of experimentally determined protein-ligand binding affinities. Nucleic Acids Res. 2007; 35: D198-D201. doi: 10.1093/nar/gkl999 PMID: 17145705.
    • (2007) Nucleic Acids Res , vol.35 , pp. D198-D201
    • Liu, T.1    Lin, Y.2    Wen, X.3    Jorissen, R.N.4    Gilson, M.K.5
  • 49
    • 84862192766 scopus 로고    scopus 로고
    • Chembl: A large-scale bioactivity database for drug discovery
    • PMID: 21948594
    • Gaulton A, Bellis LJ, Bento a P, Chambers J, Davies M, Hersey A, et al. ChEMBL: a large-scale bioactivity database for drug discovery. Nucleic Acids Res. 2012; 40: D1100-D1107. doi: 10.1093/nar/gkr777 PMID: 21948594.
    • (2012) Nucleic Acids Res , vol.40 , pp. D1100-D1107
    • Gaulton, A.1    Bellis, L.J.2    Bentoa, P.3    Chambers, J.4    Davies, M.5    Hersey, A.6
  • 50
    • 79959756890 scopus 로고    scopus 로고
    • Discovery of novel pim-1 kinase inhibitors by a hierarchical multistage virtual screening approach based on SVM model, pharmacophore, and molecular docking
    • PMID: 21618971
    • Ren JX, Li LL, Zheng RL, Xie HZ, Cao ZX, Feng S, et al. Discovery of novel Pim-1 kinase inhibitors by a hierarchical multistage virtual screening approach based on svm model, pharmacophore, and molecular docking. J Chem Inf Model. 2011; 51: 1364-1375. doi: 10.1021/ci100464b PMID: 21618971.
    • (2011) J Chem Inf Model , vol.51 , pp. 1364-1375
    • Ren, J.X.1    Li, L.L.2    Zheng, R.L.3    Xie, H.Z.4    Cao, Z.X.5    Feng, S.6
  • 51
    • 75849120416 scopus 로고    scopus 로고
    • Prediction of acetylcholinesterase inhibitors and characterization of correlative molecular descriptors by machine learning methods
    • PMID: 20053484
    • Lv W, Xue Y. Prediction of acetylcholinesterase inhibitors and characterization of correlative molecular descriptors by machine learning methods. Eur J Med Chem. Elsevier Masson SAS; 2010; 45: 1167-1172. doi: 10.1016/j.ejmech.2009.12.038 PMID: 20053484.
    • (2010) Eur J Med Chem. Elsevier Masson SAS , vol.45 , pp. 1167-1172
    • Lv, W.1    Xue, Y.2
  • 52
    • 84872782674 scopus 로고    scopus 로고
    • Available Accessed 17 September 2014
    • Schrödinger. Available: http://www.schrodinger.com/Glide/Ligand-Decoys-Set. Accessed 17 September 2014.
    • Schrödinger
  • 53
    • 84863525156 scopus 로고    scopus 로고
    • Decoyfinder: An easyto-use python gui application for building target-specific decoy sets
    • PMID: 22539671
    • Cereto-Massagué A, Guasch L, Valls C, Mulero M, Pujadas G, Garcia-Vallvé S. DecoyFinder: An easyto-use python GUI application for building target-specific decoy sets. Bioinformatics. 2012; 28: 1661-1662. doi: 10.1093/bioinformatics/bts249 PMID: 22539671.
    • (2012) Bioinformatics , vol.28 , pp. 1661-1662
    • Cereto-Massagué, A.1    Guasch, L.2    Valls, C.3    Mulero, M.4    Pujadas, G.5    Garcia-Vallvé, S.6
  • 54
    • 84958769642 scopus 로고    scopus 로고
    • version 2.8, Schrödinger, LLC, New York, NY
    • LigPrep, version 2.8, Schrödinger, LLC, New York, NY, 2013.
    • (2013) LigPrep
  • 55
    • 84958740033 scopus 로고    scopus 로고
    • version 2.5, Schrödinger, LLC, New York, NY
    • Epik, version 2.5, Schrödinger, LLC, New York, NY, 2013.
    • (2013) Epik
  • 56
    • 77951987154 scopus 로고    scopus 로고
    • Confgen: A conformational search method for efficient generation of bioactive conformers
    • PMID: 20373803
    • Watts KS, Dalal P, Murphy RB, Sherman W, Friesner RA, Shelley JC. ConfGen: A conformational search method for efficient generation of bioactive conformers. J Chem Inf Model. 2010; 50: 534-546. doi: 10.1021/ci100015j PMID: 20373803.
    • (2010) J Chem Inf Model , vol.50 , pp. 534-546
    • Watts, K.S.1    Dalal, P.2    Murphy, R.B.3    Sherman, W.4    Friesner, R.A.5    Shelley, J.C.6
  • 57
    • 0035913529 scopus 로고    scopus 로고
    • Evaluation and reparametrization of the opls-Aa force field for proteins via comparison with accurate quantum chemical calculations on peptides
    • Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL. Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides. J Phys Chem B. 2001; 105: 6474-6487. doi: 10.1021/jp003919d
    • (2001) J Phys Chem B , vol.105 , pp. 6474-6487
    • Kaminski, G.A.1    Friesner, R.A.2    Tirado-Rives, J.3    Jorgensen, W.L.4
  • 58
    • 84958764226 scopus 로고    scopus 로고
    • version 6.0 Talete srl: Milano, Italy
    • DRAGON, version 6.0; Talete srl: Milano, Italy, 2011.
    • (2011) DRAGON
  • 59
    • 0345548657 scopus 로고    scopus 로고
    • Random forest: A classification and regression tool for compound classification and qsar modeling
    • PMID: 14632445
    • Svetnik V, Liaw A, Tong C, Christopher Culberson J, Sheridan RP, Feuston BP. Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling. J Chem Inf Comput Sci. 2003; 43: 1947-1958. doi: 10.1021/ci034160g PMID: 14632445.
    • (2003) J Chem Inf Comput Sci , vol.43 , pp. 1947-1958
    • Svetnik, V.1    Liaw, A.2    Tong, C.3    Christopher Culberson, J.4    Sheridan, R.P.5    Feuston, B.P.6
  • 60
    • 67650003002 scopus 로고    scopus 로고
    • Substituted benzothiadizine inhibitors of hepatitis c virus polymerase
    • Elsevier Ltd PMID: 19515564
    • Shaw AN, Tedesco R, Bambal R, Chai D, Concha NO, Darcy MG, et al. Substituted benzothiadizine inhibitors of Hepatitis C virus polymerase. Bioorg Med Chem Lett. Elsevier Ltd; 2009; 19: 4350-4353. doi: 10.1016/j.bmcl.2009.05.091 PMID: 19515564.
    • (2009) Bioorg Med Chem Lett , vol.19 , pp. 4350-4353
    • Shaw, A.N.1    Tedesco, R.2    Bambal, R.3    Chai, D.4    Concha, N.O.5    Darcy, M.G.6
  • 61
    • 80051916718 scopus 로고    scopus 로고
    • I. Novel hcv ns5b polymerase inhibitors: Discovery of indole 2-carboxylic acids with c3-heterocycles
    • Elsevier Ltd PMID: 21840715
    • Anilkumar GN, Lesburg C a, Selyutin O, Rosenblum SB, Zeng Q, Jiang Y, et al. I. Novel HCV NS5B polymerase inhibitors: Discovery of indole 2-carboxylic acids with C3-heterocycles. Bioorganic Med Chem Lett. Elsevier Ltd; 2011; 21: 5336-5341. doi: 10.1016/j.bmcl.2011.07.021 PMID: 21840715.
    • (2011) Bioorganic Med Chem Lett , Issue.21 , pp. 5336-5341
    • Anilkumar, G.N.1    Lesburg, C.A.2    Selyutin, O.3    Rosenblum, S.B.4    Zeng, Q.5    Jiang, Y.6
  • 62
    • 23744452229 scopus 로고    scopus 로고
    • Interdomain communication in hepatitis c virus polymerase abolished by small molecule inhibitors bound to a novel allosteric site
    • PMID: 15955819
    • Di Marco S, Volpari C, Tomei L, Altamura S, Harper S, Narjes F, et al. Interdomain communication in hepatitis C virus polymerase abolished by small molecule inhibitors bound to a novel allosteric site. J Biol Chem. 2005; 280: 29765-29770. doi: 10.1074/jbc.M505423200 PMID: 15955819.
    • (2005) J Biol Chem , vol.280 , pp. 29765-29770
    • Di Marco, S.1    Volpari, C.2    Tomei, L.3    Altamura, S.4    Harper, S.5    Narjes, F.6
  • 63
    • 33744930847 scopus 로고    scopus 로고
    • Selection and characterization of replicon variants dually resistant to thumb-And palm-binding nonnucleoside polymerase inhibitors of the hepatitis c virus
    • PMID: 16731953
    • Le Pogam S, Kang H, Harris SF, Leveque V, Giannetti AM, Ali S, et al. Selection and characterization of replicon variants dually resistant to thumb-And palm-binding nonnucleoside polymerase inhibitors of the hepatitis C virus. J Virol. 2006; 80: 6146-6154. doi: 10.1128/JVI.02628-05 PMID: 16731953.
    • (2006) J Virol , vol.80 , pp. 6146-6154
    • Le Pogam, S.1    Kang, H.2    Harris, S.F.3    Leveque, V.4    Giannetti, A.M.5    Ali, S.6
  • 65
    • 77956064328 scopus 로고    scopus 로고
    • Schrödinger Suite Epik version 2.6, Schrödinger, LLC, New York, NY, 2013 Impact version 6.1, Schrödinger, LLC, New York, NY, 2013; Prime version 3.3, Schrödinger, LLC, New York, NY, 2013
    • Schrödinger Suite 2013 Protein Preparation Wizard; Epik version 2.6, Schrödinger, LLC, New York, NY, 2013; Impact version 6.1, Schrödinger, LLC, New York, NY, 2013; Prime version 3.3, Schrödinger, LLC, New York, NY, 2013.
    • (2013) Protein Preparation Wizard
  • 66
    • 84893922355 scopus 로고    scopus 로고
    • Molecular modeling and residue interaction network studies on the mechanism of binding and resistance of the hcv ns5b polymerase mutants to vx-222 and ana598
    • Elsevier B.V. PMID: 24462692
    • Xue W, Jiao P, Liu H, Yao X. Molecular modeling and residue interaction network studies on the mechanism of binding and resistance of the HCV NS5B polymerase mutants to VX-222 and ANA598. Antiviral Res. Elsevier B.V.; 2014; 104: 40-51. doi: 10.1016/j.antiviral.2014.01.006 PMID: 24462692.
    • (2014) Antiviral Res , vol.104 , pp. 40-51
    • Xue, W.1    Jiao, P.2    Liu, H.3    Yao, X.4
  • 67
    • 84868239146 scopus 로고    scopus 로고
    • Discovery of new scaffolds for rational design of hcv ns5b polymerase inhibitors
    • Elsevier Masson SAS PMID: 23127989
    • Golub AG, Gurukumar KR, Basu A, Bdzhola VG, Bilokin Y, Yarmoluk SM, et al. Discovery of new scaffolds for rational design of HCV NS5B polymerase inhibitors. Eur J Med Chem. Elsevier Masson SAS; 2012; 58: 258-264. doi: 10.1016/j.ejmech.2012.09.010 PMID: 23127989.
    • (2012) Eur J Med Chem , vol.58 , pp. 258-264
    • Golub, A.G.1    Gurukumar, K.R.2    Basu, A.3    Bdzhola, V.G.4    Bilokin, Y.5    Yarmoluk, S.M.6
  • 68
    • 84958830579 scopus 로고    scopus 로고
    • Glide, version 6.1, Schrödinger, LLC, New York, NY
    • Glide, version 6.1, Schrödinger, LLC, New York, NY, 2013.
    • (2013)
  • 69
    • 84958830580 scopus 로고    scopus 로고
    • Phase, version 3.7, Schrödinger, LLC, New York, NY
    • Phase, version 3.7, Schrödinger, LLC, New York, NY, 2013.
    • (2013)
  • 70
    • 67651002876 scopus 로고    scopus 로고
    • Energetic analysis of fragment docking and application to structurebased pharmacophore hypothesis generation
    • PMID 19421721
    • Loving K, Salam NK, Sherman W. Energetic analysis of fragment docking and application to structurebased pharmacophore hypothesis generation. J Comput Aided Mol Des. 2009; 23: 541-554. doi: 10. 1007/s10822-009-9268-1 PMID: 19421721.
    • (2009) J Comput Aided Mol des , vol.23 , pp. 541-554
    • Loving, K.1    Salam, N.K.2    Sherman, W.3
  • 71
    • 70350513554 scopus 로고    scopus 로고
    • Novel method for generating structure-based pharmacophores using energetic analysis
    • PMID: 19761201
    • Salam NK, Nuti R, Sherman W. Novel method for generating structure-based pharmacophores using energetic analysis. J Chem Inf Model. 2009; 49: 2356-2368. doi: 10.1021/ci900212v PMID: 19761201.
    • (2009) J Chem Inf Model , vol.49 , pp. 2356-2368
    • Salam, N.K.1    Nuti, R.2    Sherman, W.3
  • 72
    • 1642310340 scopus 로고    scopus 로고
    • Glide: A new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening
    • PMID: 15027866
    • Halgren TA, Murphy RB, Friesner RA, Beard HS, Frye LL, Pollard WT, et al. Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening. J Med Chem. 2004; 47: 1750-1759. doi: 10.1021/jm030644s PMID: 15027866.
    • (2004) J Med Chem , vol.47 , pp. 1750-1759
    • Halgren, T.A.1    Murphy, R.B.2    Friesner, R.A.3    Beard, H.S.4    Frye, L.L.5    Pollard, W.T.6
  • 73
    • 34247272948 scopus 로고    scopus 로고
    • Evaluating virtual screening methods: Good and bad metrics for the "early recognition" problem
    • PMID: 17288412
    • Truchon JF, Bayly CI. Evaluating virtual screening methods: Good and bad metrics for the "early recognition" problem. J Chem Inf Model. 2007; 47: 488-508. doi: 10.1021/ci600426e PMID: 17288412.
    • (2007) J Chem Inf Model , vol.47 , pp. 488-508
    • Truchon, J.F.1    Bayly, C.I.2
  • 74
    • 33845868822 scopus 로고    scopus 로고
    • Phase: A new engine for pharmacophore perception, 3d qsar model development, and 3d database screening 1. Methodology and preliminary results
    • PMID: 17124629
    • Dixon SL, Smondyrev AM, Knoll EH, Rao SN, Shaw DE, Friesner RA. PHASE: A new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results. J Comput Aided Mol Des. 2006; 20: 647-671. doi: 10.1007/s10822-006-9087-6 PMID: 17124629.
    • (2006) J Comput Aided Mol des , vol.20 , pp. 647-671
    • Dixon, S.L.1    Smondyrev, A.M.2    Knoll, E.H.3    Rao, S.N.4    Shaw, D.E.5    Friesner, R.A.6
  • 75
    • 84878241121 scopus 로고    scopus 로고
    • Stapled peptide-based membrane fusion inhibitors of hepatitis c virus
    • Elsevier Ltd PMID: 23490158
    • Cui H-K, Qing J, Guo Y, Wang Y-J, Cui L-J, He T-H, et al. Stapled peptide-based membrane fusion inhibitors of hepatitis C virus. Bioorg Med Chem. Elsevier Ltd; 2013; 21: 3547-3554. doi: 10.1016/j. bmc.2013.02.011 PMID: 23490158.
    • (2013) Bioorg Med Chem , vol.21 , pp. 3547-3554
    • Cui, H.-K.1    Qing, J.2    Guo, Y.3    Wang, Y.-J.4    Cui, L.-J.5    He, T.-H.6
  • 76
    • 84896445107 scopus 로고    scopus 로고
    • Design and synthesis of imidazo[1,2-?][1,8] naphthyridine derivatives as anti-hcv agents via direct c-h arylation
    • PMID: 24595428
    • Huang S, Qing J, Wang S, Wang H, Zhang L, Tang Y. Design and synthesis of imidazo[1,2-?][1,8] naphthyridine derivatives as anti-HCV agents via direct C-H arylation. Org Biomol Chem. 2014; 12: 2344. doi: 10.1039/c3ob42525h PMID: 24595428.
    • (2014) Org Biomol Chem , vol.12 , pp. 2344
    • Huang, S.1    Qing, J.2    Wang, S.3    Wang, H.4    Zhang, L.5    Tang, Y.6
  • 77
    • 69449083296 scopus 로고    scopus 로고
    • Compensatory mutations in ns3 and ns5a proteins enhance the virus production capability of hepatitis c reporter virus
    • PMID: 19540283
    • Han Q, Xu C, Wu C, Zhu W, Yang R, Chen X. Compensatory mutations in NS3 and NS5A proteins enhance the virus production capability of hepatitis C reporter virus. Virus Res. 2009; 145: 63-73. doi: 10.1016/j.virusres.2009.06.005 PMID: 19540283.
    • (2009) Virus Res , vol.145 , pp. 63-73
    • Han, Q.1    Xu, C.2    Wu, C.3    Zhu, W.4    Yang, R.5    Chen, X.6
  • 78
    • 84874626512 scopus 로고    scopus 로고
    • Oleanolic acid and ursolic acid: Novel hepatitis c virus antivirals that inhibit ns5b activity
    • PMID 23422646
    • Kong L, Li S, Liao Q, Zhang Y, Sun R, Zhu X, et al. Oleanolic acid and ursolic acid: Novel hepatitis C virus antivirals that inhibit NS5B activity. Antiviral Res. 2013; 98: 44-53. doi: 10.1016/j.antiviral.2013. 02.003 PMID: 23422646.
    • (2013) Antiviral Res , vol.98 , pp. 44-53
    • Kong, L.1    Li, S.2    Liao, Q.3    Zhang, Y.4    Sun, R.5    Zhu, X.6
  • 79
    • 26044446438 scopus 로고    scopus 로고
    • Two cis-Acting elements in negative RNA strand of hepatitis c virus involved in synthesis of positive RNA strand in vitro
    • PMID: 16047734
    • Ye L, Timani K a, Kong L, Yang X, Liao Q, Wu J. Two cis-Acting elements in negative RNA strand of Hepatitis C virus involved in synthesis of positive RNA strand in vitro. Acta Virol ed. 2005; 49: 83-90. PMID: 16047734.
    • (2005) Acta Virol Ed , vol.49 , pp. 83-90
    • Ye, L.1    Timani, K.A.2    Kong, L.3    Yang, X.4    Liao, Q.5    Wu, J.6
  • 80
    • 84876743796 scopus 로고    scopus 로고
    • Random forests for feature selection in qspr models-An application for predicting standard enthalpy of formation of hydrocarbons
    • PMID: 23399299
    • Teixeira AL, Leal JP, Falcao AO. Random forests for feature selection in QSPR models-An application for predicting standard enthalpy of formation of hydrocarbons. J Cheminform. Journal of Cheminformatics; 2013; 5: 9-24. doi: 10.1186/1758-2946-5-9 PMID: 23399299.
    • (2013) J Cheminform Journal of Cheminformatics , vol.5 , pp. 9-24
    • Teixeira, A.L.1    Leal, J.P.2    Falcao, A.O.3
  • 81
    • 84877806611 scopus 로고    scopus 로고
    • Inhibitors for the hepatitis c virus RNA polymerase explored by sar with advanced machine learning methods
    • Elsevier Ltd PMID: 23608107
    • Weidlich IE, Filippov I V, Brown J, Kaushik-Basu N, Krishnan R, Nicklaus MC, et al. Inhibitors for the hepatitis C virus RNA polymerase explored by SAR with advanced machine learning methods. Bioorg Med Chem. Elsevier Ltd; 2013; 21: 3127-37. doi: 10.1016/j.bmc.2013.03.032 PMID: 23608107.
    • (2013) Bioorg Med Chem , vol.21 , pp. 3127-3137
    • Weidlich, I.E.1    Filippov, I.V.2    Brown, J.3    Kaushik-Basu, N.4    Krishnan, R.5    Nicklaus, M.C.6
  • 82
    • 33846856225 scopus 로고    scopus 로고
    • Random forest models to predict aqueous solubility
    • PMID: 17238260
    • Palmer DS, O'Boyle NM, Glen RC, Mitchell JBO. Random forest models to predict aqueous solubility. J Chem Inf Model. 2007; 47: 150-158. doi: 10.1021/ci060164k PMID: 17238260.
    • (2007) J Chem Inf Model , vol.47 , pp. 150-158
    • Palmer, D.S.1    O'Boyle, N.M.2    Glen, R.C.3    Mitchell, J.B.O.4
  • 83
    • 84867827686 scopus 로고    scopus 로고
    • Does rational selection of training and test sets improve the outcome of qsar modeling?
    • PMID: 23030316
    • Martin TM, Harten P, Young DM, Muratov EN, Golbraikh A, Zhu H, et al. Does rational selection of training and test sets improve the outcome of QSAR modeling? J Chem Inf Model. 2012; 52: 2570-2578. doi: 10.1021/ci300338w PMID: 23030316.
    • (2012) J Chem Inf Model , vol.52 , pp. 2570-2578
    • Martin, T.M.1    Harten, P.2    Young, D.M.3    Muratov, E.N.4    Golbraikh, A.5    Zhu, H.6
  • 84
    • 77954075802 scopus 로고    scopus 로고
    • Gaussian processes for classification: Qsar modeling of admet and target activity
    • PMID: 20433177
    • Obrezanova O, Segall MD. Gaussian processes for classification: QSAR modeling of ADMET and target activity. J Chem Inf Model. 2010; 50: 1053-1061. doi: 10.1021/ci900406x PMID: 20433177.
    • (2010) J Chem Inf Model , vol.50 , pp. 1053-1061
    • Obrezanova, O.1    Segall, M.D.2
  • 85
    • 84902438255 scopus 로고    scopus 로고
    • Improved protein-ligand binding affinity prediction by using a curvature-dependent surfacearea model
    • PMID: 24563257
    • Cao Y, Li L. Improved protein-ligand binding affinity prediction by using a curvature-dependent surfacearea model. Bioinformatics. 2014; 30: 1674-1680. doi: 10.1093/bioinformatics/btu104 PMID: 24563257.
    • (2014) Bioinformatics , vol.30 , pp. 1674-1680
    • Cao, Y.1    Li, L.2
  • 86
    • 0038322074 scopus 로고    scopus 로고
    • Non-nucleoside analogue inhibitors bind to an allosteric site on hcv ns5b polymerase. Crystal structures and mechanism of inhibition
    • PMID: 12509436
    • Wang M, Ng KK-S, Cherney MM, Chan L, Yannopoulos CG, Bedard J, et al. Non-nucleoside analogue inhibitors bind to an allosteric site on HCV NS5B polymerase. Crystal structures and mechanism of inhibition. J Biol Chem. 2003; 278: 9489-9495. doi: 10.1074/jbc.M209397200 PMID: 12509436.
    • (2003) J Biol Chem , vol.278 , pp. 9489-9495
    • Wang, M.1    Ng, K.K.-S.2    Cherney, M.M.3    Chan, L.4    Yannopoulos, C.G.5    Bedard, J.6
  • 87
    • 22244435560 scopus 로고    scopus 로고
    • Potent inhibitors of subgenomic hepatitis c virus RNA replication through optimization of indole-n-Acetamide allosteric inhibitors of the viral ns5b polymerase
    • PMID: 15999993
    • Harper S, Avolio S, Pacini B, Di Filippo M, Altamura S, Tomei L, et al. Potent inhibitors of subgenomic hepatitis C virus RNA replication through optimization of indole-N-Acetamide allosteric inhibitors of the viral NS5B polymerase. J Med Chem. 2005; 48: 4547-4557. doi: 10.1021/jm050056+ PMID: 15999993.
    • (2005) J Med Chem , vol.48 , pp. 4547-4557
    • Harper, S.1    Avolio, S.2    Pacini, B.3    Di Filippo, M.4    Altamura, S.5    Tomei, L.6
  • 88
    • 0029894013 scopus 로고    scopus 로고
    • The properties of known drugs. 1. Molecular frameworks
    • PMID: 8709122
    • Bemis GW, Murcko M a. The properties of known drugs. 1. Molecular frameworks. J Med Chem. 1996; 39: 2887-2893. doi: 10.1021/jm9602928 PMID: 8709122
    • (1996) J Med Chem , vol.39 , pp. 2887-2893
    • Bemis, G.W.1    Murcko, M.A.2
  • 89
    • 84864264343 scopus 로고    scopus 로고
    • Directory of useful decoys, enhanced (dud-e): Better ligands and decoys for better benchmarking
    • PMID: 22716043
    • Mysinger MM, Carchia M, Irwin JJ, Shoichet BK. Directory of useful decoys, enhanced (DUD-E): better ligands and decoys for better benchmarking. J Med Chem. 2012; 55: 6582-6594. doi: 10.1021/jm300687e PMID: 22716043.
    • (2012) J Med Chem , vol.55 , pp. 6582-6594
    • Mysinger, M.M.1    Carchia, M.2    Irwin, J.J.3    Shoichet, B.K.4
  • 90
    • 84861109960 scopus 로고    scopus 로고
    • Genotype and subtype profiling of psi-7977 as a nucleotide inhibitor of hepatitis c virus
    • PMID: 22430955
    • Lam AM, Espiritu C, Bansal S, Micolochick Steuer HM, Niu C, Zennou V, et al. Genotype and subtype profiling of PSI-7977 as a nucleotide inhibitor of hepatitis C virus. Antimicrob Agents Chemother. 2012; 56: 3359-3368. doi: 10.1128/AAC.00054-12 PMID: 22430955.
    • (2012) Antimicrob Agents Chemother , vol.56 , pp. 3359-3368
    • Lam, A.M.1    Espiritu, C.2    Bansal, S.3    Micolochick Steuer, H.M.4    Niu, C.5    Zennou, V.6
  • 92
    • 84862236586 scopus 로고    scopus 로고
    • Tri-substituted acylhydrazines as tertiary amide bioisosteres: Hcv ns5b polymerase inhibitors
    • Elsevier Ltd PMID: 22664130
    • Canales E, Carlson JS, Appleby T, Fenaux M, Lee J, Tian Y, et al. Tri-substituted acylhydrazines as tertiary amide bioisosteres: HCV NS5B polymerase inhibitors. Bioorganic Med Chem Lett. Elsevier Ltd; 2012; 22: 4288-4292. doi: 10.1016/j.bmcl.2012.05.025 PMID: 22664130.
    • (2012) Bioorganic Med Chem Lett , vol.22 , pp. 4288-4292
    • Canales, E.1    Carlson, J.S.2    Appleby, T.3    Fenaux, M.4    Lee, J.5    Tian, Y.6
  • 93
    • 84894549522 scopus 로고    scopus 로고
    • Chemical genetics-based discovery of indole derivatives as hcv ns5b polymerase inhibitors
    • Elsevier Masson SAS PMID: 24561671
    • Jin G, Lee S, Choi M, Son S, Kim GW, Oh JW, et al. Chemical genetics-based discovery of indole derivatives as HCV NS5B polymerase inhibitors. Eur J Med Chem. Elsevier Masson SAS; 2014; 75: 413-425. doi: 10.1016/j.ejmech.2014.01.062 PMID: 24561671.
    • (2014) Eur J Med Chem , vol.75 , pp. 413-425
    • Jin, G.1    Lee, S.2    Choi, M.3    Son, S.4    Kim, G.W.5    Oh, J.W.6
  • 94
    • 67649962669 scopus 로고    scopus 로고
    • Rapid assessment of a novel series of selective cb2 agonists using parallel synthesis protocols: A lipophilic efficiency (lipe) analysis
    • Elsevier Ltd PMID 19500981
    • Ryckmans T, Edwards MP, Horne V a, Correia AM, Owen DR, Thompson LR, et al. Rapid assessment of a novel series of selective CB2 agonists using parallel synthesis protocols: A Lipophilic Efficiency (LipE) analysis. Bioorg Med Chem Lett. Elsevier Ltd; 2009; 19: 4406-4409. doi: 10.1016/j.bmcl.2009. 05.062 PMID: 19500981.
    • (2009) Bioorg Med Chem Lett , vol.19 , pp. 4406-4409
    • Ryckmans, T.1    Edwards, M.P.2    Horne, V.A.3    Correia, A.M.4    Owen, D.R.5    Thompson, L.R.6
  • 95
    • 84958830581 scopus 로고    scopus 로고
    • QikProp, version 3.8, Schrödinger, LLC, New York, NY
    • QikProp, version 3.8, Schrödinger, LLC, New York, NY, 2013.
    • (2013)
  • 96
    • 0242421370 scopus 로고
    • Opioid receptor reserve in normal and morphine-tolerant Guinea pig ileum myenteric plexus
    • Available PMID: 6095280
    • Chavkin C, Goldstein A. Opioid receptor reserve in normal and morphine-tolerant guinea pig ileum myenteric plexus. Proc Natl Acad Sci U S A. 1984; 81: 7253-7. Available: http://www.pubmedcentral. nih.gov/articlerender.fcgiartid=392117&tool=pmcentrez&rendertype=abstract 6095280. PMID: 6095280
    • (1984) Proc Natl Acad Sci U S A , vol.81 , pp. 7253-7257
    • Chavkin, C.1    Goldstein, A.2
  • 97
    • 77952772341 scopus 로고    scopus 로고
    • Extended-connectivity fingerprints
    • PMID 20426451
    • Rogers D, Hahn M. Extended-connectivity fingerprints. J Chem Inf Model. 2010; 50: 742-754. doi: 10. 1021/ci100050t PMID: 20426451.
    • (2010) J Chem Inf Model , vol.50 , pp. 742-754
    • Rogers, D.1    Hahn, M.2
  • 98
    • 84896290583 scopus 로고    scopus 로고
    • Molecular dynamics simulations and structure-based rational design lead to allosteric hcv ns5b polymerase thumb pocket 2 inhibitor with picomolar cellular replicon potency
    • PMID: 23773186
    • Hucke O, Coulombe R, Bonneau P, Bertrand-Laperle M, Brochu C, Gillard J, et al. Molecular dynamics simulations and structure-based rational design lead to allosteric HCV NS5B polymerase thumb pocket 2 inhibitor with picomolar cellular replicon potency. J Med Chem. 2014; 57: 1932-1943. doi: 10.1021/jm4004522 PMID: 23773186.
    • (2014) J Med Chem , vol.57 , pp. 1932-1943
    • Hucke, O.1    Coulombe, R.2    Bonneau, P.3    Bertrand-Laperle, M.4    Brochu, C.5    Gillard, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.