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71049179807
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note
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All structures are arbitrarily drawn as one of several possible tautomers.
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48
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71049136489
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note
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2 at pH 7.6 and an inhibitor concentration of 2-10 mM. Diffraction data were collected to a resolution of 1.9 Å for compound 1. The crystal structure discussed in this paper has been deposited in the Protein Databank (http://www.rcsb.org) with entry code 3HRL. Full structure determination details are provided in the PDB entry.
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71049130681
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Gobbi, A.; Lardy, M.; Showalter, R. E.; Zhou, Y.; Zhao, Q. Illuminator: Increasing the Impact of Computational Tools in Drug Discovery. Abstracts, 41st Western Regional Meeting of the American Chemical Society, San Diego, CA, United States, October 9-13, 2007; GEN-245.
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71049121399
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unpublished, internal communication
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Chen, L.1
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71049155368
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PCT International Patent Application, WO 2007150001 A1
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Ruebsam, F.; Tran, M. T.; Webber, S. E.; Dragovich, P. S.; Li, L.-S.; Murphy, D. E.; Kucera, D. J.; Sun, Z.; Tran, C. V. PCT International Patent Application, WO 2007150001 A1, 2007.
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71049158381
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note
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The optical purity (ee) of compound 2c prepared from anhydride 9 via enantioselective desymmetrization was rigorously determined by chiral HPLC to be >98.5% (using enantiomer 2e and racemic analog 2a as HPLC references). This result also established that the chemistries depicted in Scheme 1 which transform β-amino acid esters 7 to inhibitors 2 do not result in significant racemization. The optical purities of other chiral inhibitors 2, 4, and 5 described in this work were therefore assumed to be similar to those of the corresponding starting materials (typically >96% ee).
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71049160723
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Luciferase-based HCV Replicon Assay Protocol (EC50 1b, The cell culture component of the assay is performed essentially as described by Bartenschlager et al, Hepatology 2002, 35, 694, wherein exponentially growing HCV Huh-luc/neo-ET replicon cells were seeded at 6 × 103 cells/well in 96 well assay plate. 24 h later the cells were treated with various concentrations of compound in triplicate. After 72 h exposure to the compound the luciferase activity in the wells was determined using Bright-Glo reagent (Promega, Madison, Wisconsin) with a luminometer (Wallac 1420 Multilabel HTS Counter Victor 2, The background control was replicon cells treated with 100 nM BILN-2061, an inhibitor of the HCV protease, Inhibition was determined for each compound concentration in relation to the negative (no compound) control to calculate the EC50 1b
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50 (1b).
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58
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71049165096
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Transcripts of the HCV genotype 1a-1b chimera replicon were generated using the Megascript T7 kit (Applied Biosystems, Exponentially growing Huh7-Lunet cells were transfected with 4 μg of replicon RNA with a Gene Pulser MXcell Bio-Rad, Transfected cells were plated into 96-well plates with 7500 cells per well. Compounds at various concentrations were added to the cells after 2 h and were cultured for 4 days. The cells were lysed with the Bright-Glo Reagent and luciferase activity was measured with a Victor 2 luminometer. The EC50 values were determined using a standard four-parameter dose-response equation. Dose responses were performed in triplicate for a single experiment and the values were averaged. Potent compounds were repeated at least two times to verify reproducibility
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50 values were determined using a standard four-parameter dose-response equation. Dose responses were performed in triplicate for a single experiment and the values were averaged. Potent compounds were repeated at least two times to verify reproducibility.
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59
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71049133938
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note
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2, 2% DMSO.
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71049118516
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note
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The exact nature of the biological systems is currently unknown, but possibilities include transporters, conjugation enzymes or other drug metabolizing enzymes.
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61
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71049161551
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note
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We cannot exclude the possibility that the improved in vivo properties of compounds 2c, 2cn, and 2cp result from increased aqueous solubility that was not detected in our solubility assessments.
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