-
1
-
-
1642357706
-
The many roles of computation in drug discovery
-
Jorgensen, W. L. The many roles of computation in drug discovery. Science 2004, 303, 1813-1818
-
(2004)
Science
, vol.303
, pp. 1813-1818
-
-
Jorgensen, W.L.1
-
2
-
-
40949160570
-
Lead identification of acetylcholinesterase inhibitorshistamine H3 receptor antagonists from molecular modeling
-
Bembenek, S. D.; Keith, J. M.; Letavic, M. A.; Apodaca, R.; Barbier, A. J.; Dvorak, L.; Aluisio, L.; Miller, K. L.; Lovenberg, T. W.; Carrathers, N. I. Lead identification of acetylcholinesterase inhibitorshistamine H3 receptor antagonists from molecular modeling. Bioorg. Med. Chem. 2008, 16, 2968-2973
-
(2008)
Bioorg. Med. Chem.
, vol.16
, pp. 2968-2973
-
-
Bembenek, S.D.1
Keith, J.M.2
Letavic, M.A.3
Apodaca, R.4
Barbier, A.J.5
Dvorak, L.6
Aluisio, L.7
Miller, K.L.8
Lovenberg, T.W.9
Carrathers, N.I.10
-
3
-
-
41849121148
-
Combination of virtual screening and high throughput gene profiling for identification of novel liver X receptor modulators
-
Cheng, J. F.; Zapf, J.; Takedomi, K.; Fukushima, C.; Ogiku, T.; Zhang, S. H.; Yang, G.; Sakurai, N.; Barbosa, M.; Jack, R.; Xu, K. Combination of virtual screening and high throughput gene profiling for identification of novel liver X receptor modulators. J. Med. Chem. 2008, 51, 2057-2061
-
(2008)
J. Med. Chem.
, vol.51
, pp. 2057-2061
-
-
Cheng, J.F.1
Zapf, J.2
Takedomi, K.3
Fukushima, C.4
Ogiku, T.5
Zhang, S.H.6
Yang, G.7
Sakurai, N.8
Barbosa, M.9
Jack, R.10
Xu, K.11
-
4
-
-
34250658084
-
Selective chemical probe inhibitor of Stat3, identified through structure-based virtual screening, induces antitumor activity
-
DOI 10.1073/pnas.0609757104
-
(4) Siddiquee, K.; Zhang, S.; Guida, W. C.; Blaskovich, M. A.; Greedy, B.; Lawrence, H. R.; Yip, M. L.; Jove, R.; McLaughlin, M. M.; Lawrence, N. J.; Sebti, S. M.; Turkson, J. Selective chemical probe inhibitor of Stat3, identified through structure-based virtual screening, induces antitumor activity. Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 7391-7396 (Pubitemid 47185916)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.18
, pp. 7391-7396
-
-
Siddiquee, K.1
Zhang, S.2
Guida, W.C.3
Blaskovich, M.A.4
Greedy, B.5
Lawrence, H.R.6
Yip, M.L.R.7
Jove, R.8
McLaughlin, M.M.9
Lawrence, N.J.10
Sebti, S.M.11
Turkson, J.12
-
5
-
-
11144323163
-
Virtual screening of chemical libraries
-
Shoichet, B. K. Virtual screening of chemical libraries. Nature 2004, 432, 862-865
-
(2004)
Nature
, vol.432
, pp. 862-865
-
-
Shoichet, B.K.1
-
6
-
-
33745213575
-
Rao, S. N. PHASE: A novel approach to pharmacophore modeling and 3D database searching
-
Dixon, S. L.; Smondyrev, A. M.; Rao, S. N. PHASE: a novel approach to pharmacophore modeling and 3D database searching. Chem. Biol. Drug Des. 2006, 67, 370-372
-
(2006)
Chem. Biol. Drug Des.
, vol.67
, pp. 370-372
-
-
Dixon, S.L.1
Smondyrev, A.M.2
-
7
-
-
42949169980
-
Identification of Plasmodium falciparum spermidine synthase active site binders through structure-based virtual screening
-
DOI 10.1021/jm7016144
-
(7) Jacobsson, M.; Garedal, M.; Schultz, J.; Karlen, A. Identification of Plasmodium falciparum spermidine synthase active site binders through structure-based virtual screening. J. Med. Chem. 2008, 51, 2777-2786 (Pubitemid 351620799)
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, Issue.9
, pp. 2777-2786
-
-
Jacobsson, M.1
Garedal, M.2
Schultz, J.3
Karlen, A.4
-
8
-
-
0036708528
-
A novel shape-feature based approach to virtual library screening
-
Putta, S.; Lemmen, C.; Beroza, P.; Greene, J. A. novel shape-feature based approach to virtual library screening, J. Chem. Inf. Comput. Sci. 2002, 42, 1230-1310
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 1230-1310
-
-
Putta, S.1
Lemmen, C.2
Beroza, P.3
Greene, J.4
-
9
-
-
0141882047
-
History and evolution of the pharmacophore concept in computer-aided drag design
-
Guner, O. F. History and evolution of the pharmacophore concept in computer-aided drag design. Curr. Top. Med. Chem. 2002, 2, 1321-1332
-
(2002)
Curr. Top. Med. Chem.
, vol.2
, pp. 1321-1332
-
-
Guner, O.F.1
-
10
-
-
5544290537
-
Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): Evaluation of performance
-
Bender, A.; Mussa, H. Y.; Glen, R. C.; Reiling, S. Similarity searching of chemical databases using atom environment descriptors (MOLPRINT 2D): evaluation of performance. J. Chem. Inf. Comput. Sci. 2004, 44, 1708-1718
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 1708-1718
-
-
Bender, A.1
Mussa, H.Y.2
Glen, R.C.3
Reiling, S.4
-
11
-
-
34547673017
-
Comparison of topological, shape, and docking methods in virtual screening
-
DOI 10.1021/ci700052x
-
(11) McGaughey, G. B.; Sheridan, R. P.; Bayly, C. I.; Culberson, J. C.; Kreatsoulas, C.; Lindsley, S.; Maiorov, V.; Truchon, J. F.; Cornell, W. D. Comparison of topological, shape, and docking methods in. virtual screening, J. Chem. Inf. Model. 2007, 47, 1504-1519 (Pubitemid 47210053)
-
(2007)
Journal of Chemical Information and Modeling
, vol.47
, Issue.4
, pp. 1504-1519
-
-
McGaughey, G.B.1
Sheridan, R.P.2
Bayly, C.I.3
Culberson, J.C.4
Kreatsoulas, C.5
Lindsley, S.6
Maiorov, V.7
Truchon, J.-F.8
Cornell, W.D.9
-
12
-
-
43049151814
-
Identification of novel cannabinoid CB1 receptor antagonists by using virtual screening with a pharmacophore model
-
DOI 10.1021/jm701519h
-
(12) Wang, H.; Duffy, R. A.; Boykow, G. C.; Chackalamannil, S.; Madison, V. S. Identification of novel cannabinoid CB1 receptor antagonists by using virtual screening with, a pharmacophore model. J. Med. Chem. 2008, 51, 2439-2446 (Pubitemid 351628505)
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, Issue.8
, pp. 2439-2446
-
-
Wang, H.1
Duffy, R.A.2
Boykow, G.C.3
Chackalamannil, S.4
Madison, V.S.5
-
13
-
-
47749148101
-
Discovery of nonsteroidal 17β-hydroxysteroid dehydrogenase 1 inhibitors by pharmacophore-based screening of virtual compound libraries
-
DOI 10.1021/jm800054h
-
(13) Schuster, D.; Nashev, L. G.; Kirchmair, J.; Laggner, C.; Wolber, G.; Langer, T.; Odermatt, A. Discovery of nonsteroidal 17beta-hydroxysteroid dehydrogenase 1 inhibitors by pharmacophore-based screening of virtual compound libraries. J. Med. Chem. 2008, 51, 4188-4199 (Pubitemid 352032443)
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, Issue.14
, pp. 4188-4199
-
-
Schuster, D.1
Nashev, L.G.2
Kirchmair, J.3
Laggner, C.4
Wolber, G.5
Langer, T.6
Odermatt, A.7
-
14
-
-
59449087748
-
Fast three dimensional pharmacophore virtual screening of new potent nonsteroid aromatase inhibitors
-
Neves, M. A.; Dinis, T. C.; Colombo, G.; Sa e Melo, M. L. Fast three dimensional pharmacophore virtual screening of new potent nonsteroid aromatase inhibitors. J. Med. Chem. 2009, 52, 143-150
-
(2009)
J. Med. Chem.
, vol.52
, pp. 143-150
-
-
Neves, M.A.1
Dinis, T.C.2
Colombo, G.3
Sa E. Melo, M.L.4
-
15
-
-
33845868822
-
Friesner, R. A. PHASE: A new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results
-
Dixon, S. L.; Smondyrev, A. M.; Knoll, E. H.; Rao, S. N.; Shaw, D. E.; Friesner, R. A. PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results. J. Comput.-Aided Mol. Des. 2006, 20, 647-671
-
(2006)
J. Comput.-Aided Mol. Des.
, vol.20
, pp. 647-671
-
-
Dixon, S.L.1
Smondyrev, A.M.2
Knoll, E.H.3
Rao, S.N.4
Shaw, D.E.5
-
16
-
-
5644236834
-
Pharmacophore modeling and three dimensional database searching for drug design using catalyst: Recent advances
-
(16) Guner, O.; Clement, O.; Kurogi, Y. Pharmacophore modeling and three dimensional database searching for drug design using catalyst: recent advances. Curr. Med. Chem. 2004, 11, 2991-3005. (Pubitemid 39369268)
-
(2004)
Current Medicinal Chemistry
, vol.11
, Issue.22
, pp. 2991-3005
-
-
Guner, O.1
Clement, O.2
Kurogi, Y.3
-
17
-
-
58149083154
-
Structurally constrained hybrid derivatives containing octahydrobenzo[g or f]quinoline moieties for dopamine D2 and D3 receptors: Binding characterization at D2/D3 receptors and elucidation of a pharmacophore model
-
Brown, D. A.; Kharkar, P. S.; Partington, I.; Reith, M. E.; Dutta, A. K. Structurally constrained hybrid derivatives containing octahydrobenzo[g or f]quinoline moieties for dopamine D2 and D3 receptors: binding characterization at D2/D3 receptors and elucidation of a pharmacophore model. J. Med. Chem. 2008, 51, 7806-7819
-
(2008)
J. Med. Chem.
, vol.51
, pp. 7806-7819
-
-
Brown, D.A.1
Kharkar, P.S.2
Partington, I.3
Reith, M.E.4
Dutta, A.K.5
-
18
-
-
13844320566
-
3-D pharmacophores derived from protein-bound ligands and their use as virtual screening filters
-
Wolber, G.; Langer, T. LigandScout: 3-D pharmacophores derived from protein-bound ligands and their use as virtual screening filters. J. Chem. Inf. Model. 2005, 45, 160-169
-
(2005)
J. Chem. Inf. Model.
, vol.45
, pp. 160-169
-
-
Wolber, G.1
Ligandscout, L.T.2
-
19
-
-
33745584385
-
GRID-based pharmacophore model: Concept and application studies to protein-protein recognition
-
Ortuso, F.; Langer, T.; Alcaro, S. GBPM: GRID-based pharmacophore model: concept and application studies to protein-protein recognition. Bioinformatics 2006, 22, 1449-1455
-
(2006)
Bioinformatics
, vol.22
, pp. 1449-1455
-
-
Ortuso, F.1
Langer, T.2
Gbpm, A.S.3
-
20
-
-
33845727607
-
Pocket v.2: Further developments on receptor-based pharmacophore modeling
-
DOI 10.1021/ci600246s
-
(20) Chen, J.; Lai, L. Pocket v.2: further developments on receptor-based pharmacophore modeling, J. Chem. Inf. Model. 2006, 46, 2684-2691 (Pubitemid 46008137)
-
(2006)
Journal of Chemical Information and Modeling
, vol.46
, Issue.6
, pp. 2684-2691
-
-
Chen, J.1
Lai, L.2
-
21
-
-
70350465931
-
Structurebased virtual screening for identification of novel 11beta-HSD1 inhibitors
-
Yang, H.; Shen, Y.; Chen, J.; Jiang, Q.; Leng, Y.; Shen, J. Structurebased virtual screening for identification of novel 11beta-HSD1 inhibitors. Eur. J. Med Chem. 2008.
-
(2008)
Eur. J. Med Chem.
-
-
Yang, H.1
Shen, Y.2
Chen, J.3
Jiang, Q.4
Leng, Y.5
Shen, J.6
-
22
-
-
0029283717
-
Flexible ligand docking using a genetic algorithm
-
Oshiro, C. M.; Kuntz, I. D.; Dixon, J. S. Flexible ligand docking using a genetic algorithm, J. Comput.-Aided Mol. Des. 1995, 9, 113-130
-
(1995)
J. Comput.-Aided Mol. Des.
, vol.9
, pp. 113-130
-
-
Oshiro, C.M.1
Kuntz, I.D.2
Dixon, J.S.3
-
24
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
Jones, G.; Willett, P.; Glen, R. C.; Leach, A. R.; Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol. 1997, 267, 727-748
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
25
-
-
0037434582
-
Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine
-
Jain, A. N. Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine. J. Med. Chem. 2003, 46, 499-511.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 499-511
-
-
Jain, A.N.1
-
26
-
-
12144289984
-
Glide: A new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy
-
Friesner, R. A.; Banks, J. L.; Murphy, R. B.; Halgren, T. A.; Klicic, J. J.; Mainz, D. T.; Repasky, M. P.; Knoll, E. H.; Shelley, M.; Perry, J. K.; Shaw, D. E.; Francis, P.; Shenkin, P. S. Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy. J. Med. Chem. 2004, 47, 1739-1749
-
(2004)
J. Med. Chem.
, vol.47
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
27
-
-
31544450787
-
Novel procedure for modeling ligand/receptor induced fit effects
-
DOI 10.1021/jm050540c
-
(27) Sherman, W.; Day, T.; Jacobson, M. P.; Friesner, R. A.; Farid, R. Novel procedure for modeling ligand/receptor induced fit effects. J. Med. Chem. 2006, 49, 534-553 (Pubitemid 43157487)
-
(2006)
Journal of Medicinal Chemistry
, vol.49
, Issue.2
, pp. 534-553
-
-
Sherman, W.1
Day, T.2
Jacobson, M.P.3
Friesner, R.A.4
Farid, R.5
-
28
-
-
1442351132
-
Protein flexibility in ligand docking and virtual screening to protein, kinases
-
Cavasotto, C. N.; Abagyan, R. A. Protein flexibility in ligand docking and virtual screening to protein, kinases. J. Mol. Biol. 2004, 337, 209-225
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 209-225
-
-
Cavasotto, C.N.1
Abagyan, R.A.2
-
29
-
-
33646765220
-
Effective handling of induced-fit motion in flexible docking
-
Mizutani, M. Y.; Takamatsu, Y.; Ichinose, T.; Nakamura, K.; Itai, A. Effective handling of induced-fit motion in flexible docking. Proteins 2006, 63, 878-891
-
(2006)
Proteins
, vol.63
, pp. 878-891
-
-
Mizutani, M.Y.1
Takamatsu, Y.2
Ichinose, T.3
Nakamura, K.4
Itai, A.5
-
30
-
-
33749266178
-
A method for induced-fit docking, scoring, and ranking of flexible ligands. Application to peptidic and pseudopeptidic beta-secretase (BACE 1) inhibitors
-
Moitessier, N.; Therrien, E.; Hanessian, S. A method for induced-fit docking, scoring, and ranking of flexible ligands. Application to peptidic and pseudopeptidic beta-secretase (BACE 1) inhibitors. J. Med. Chem. 2006, 49, 5885-5894
-
(2006)
J. Med. Chem.
, vol.49
, pp. 5885-5894
-
-
Moitessier, N.1
Therrien, E.2
Hanessian, S.3
-
31
-
-
37349085453
-
A flexible approach to induced fit docking
-
Nabuurs, S. B.; Wagener, M.; de Vlieg, J. A. flexible approach to induced fit docking. J. Med. Chem. 2007, 50, 6507-6518
-
(2007)
J. Med. Chem.
, vol.50
, pp. 6507-6518
-
-
Nabuurs, S.B.1
Wagener, M.2
De Vlieg, J.3
-
32
-
-
50249130736
-
Improving database enrichment through ensemble docking
-
Rao, S.; Sanschagrin, P. C.; Greenwood, J. R.; Repasky, M. P.; Sherman, W.; Farid, R. Improving database enrichment through ensemble docking. J. Comput.-Aided Mol. Des. 2008, 22, 621-627
-
(2008)
J. Comput.-Aided Mol. Des.
, vol.22
, pp. 621-627
-
-
Rao, S.1
Sanschagrin, P.C.2
Greenwood, J.R.3
Repasky, M.P.4
Sherman, W.5
Farid, R.6
-
33
-
-
1642310340
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening
-
DOI 10.1021/jm030644s
-
(33) Halgren, T. A.; Murphy, R. B.; Friesner, R. A.; Beard, H. S.; Frye, L. L.; Pollard, W. T.; Banks, J. L. Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening. J. Med. Chem. 2004, 47, 1750-1759 (Pubitemid 38380918)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.7
, pp. 1750-1759
-
-
Halgren, T.A.1
Murphy, R.B.2
Friesner, R.A.3
Beard, H.S.4
Frye, L.L.5
Pollard, W.T.6
Banks, J.L.7
-
34
-
-
33750124980
-
Extra precision glide: Docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes
-
Friesner, R. A.; Murphy, R. B.; Repasky, M. P.; Frye, L. L.; Greenwood, J. R.; Halgren, T. A.; Sanschagrin, P. C.; Mainz, D. T. Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes. J. Med. Chem. 2006, 49, 6177-6196
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6177-6196
-
-
Friesner, R.A.1
Murphy, R.B.2
Repasky, M.P.3
Frye, L.L.4
Greenwood, J.R.5
Halgren, T.A.6
Sanschagrin, P.C.7
Mainz, D.T.8
-
35
-
-
0031226772
-
Empirical scoring functions: I. the development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
-
Eldridge, M. D.; Murray, C. W.; Auton, T. R.; Paolini, G. V.; Mee, R. P. Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes. J. Comput.-Aided Mol. Des. 1997, 11, 425-445
-
(1997)
J. Comput.-Aided Mol. Des.
, vol.11
, pp. 425-445
-
-
Eldridge, M.D.1
Murray, C.W.2
Auton, T.R.3
Paolini, G.V.4
Mee, R.P.5
-
36
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank. Nucleic Acids Res. 2000, 28, 235-242
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
37
-
-
34247272948
-
Evaluating virtual screening methods: Good and bad metrics for the "early recognition" problem
-
Truchon, J. F.; Bayly, C. I. Evaluating virtual screening methods: good and bad metrics for the "early recognition" problem. J. Chem. Inf. Model 2007, 47, 488-508.
-
(2007)
J. Chem. Inf. Model
, vol.47
, pp. 488-508
-
-
Truchon, J.F.1
Bayly, C.I.2
-
38
-
-
0029382865
-
Enhancing the diversity of a corporate database using chemical database clustering and analysis
-
Shemetulskis, N. E.; Dunbar, J. B., Jr.; Dunbar, B. W.; Moreland, D. W.; Humblet, C. Enhancing the diversity of a corporate database using chemical database clustering and analysis. J. Comput.-Aided Mol. Des. 1995, 9, 407-416
-
(1995)
J. Comput.-Aided Mol. Des.
, vol.9
, pp. 407-416
-
-
Shemetulskis, N.E.1
Dunbar Jr., J.B.2
Dunbar, B.W.3
Moreland, D.W.4
Humblet, C.5
-
39
-
-
17144385534
-
Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4
-
Triballeau, N.; Acher, F.; Brabet, I.; Pin, J. P.; Bertrand, H. O. Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4. J. Med. Chem. 2005, 48, 2534-2547
-
(2005)
J. Med. Chem.
, vol.48
, pp. 2534-2547
-
-
Triballeau, N.1
Acher, F.2
Brabet, I.3
Pin, J.P.4
-
40
-
-
0032530336
-
Structural basis of inhibitor selectivity in MAP kinases
-
(40) Wang, Z.; Canagarajah, B. J.; Boehm, J. C.; Kassisa, S.; Cobb, M. H.; Young, P. R.; Abdel-Meguid, S.; Adams, J. L.; Goldsmith, E. J. Structural basis of inhibitor selectivity in MAP kinases. Structure 1998, 6, 1117-1128 (Pubitemid 28434115)
-
(1998)
Structure
, vol.6
, Issue.9
, pp. 1117-1128
-
-
Wang, Z.1
Canagarajah, B.J.2
Boehm, J.C.3
Kassisa, S.4
Cobb, M.H.5
Young, P.R.6
Abdel-Meguid, S.7
Adams, J.L.8
Goldsmith, E.J.9
-
41
-
-
0029976422
-
Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors
-
(41) Hopkins, A. L.; Ren, J.; Esnouf, R. M.; Willcox, B. E.; Jones, E. Y.; Ross, C.; Miyasaka, T.; Walker, R. T.; Tanaka, H.; Stammers, D. K.; Stuart, D. I. Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors. J. Med. Chem. 1996, 39, 1589-1600 (Pubitemid 126614510)
-
(1996)
Journal of Medicinal Chemistry
, vol.39
, Issue.8
, pp. 1589-1600
-
-
Hopkins, A.L.1
Ren, J.2
Esnouf, R.M.3
Willcox, B.E.4
Jones, E.Y.5
Ross, C.6
Miyasaka, T.7
Walker, R.T.8
Tanaka, H.9
Stammers, D.K.10
Stuart, D.I.11
-
42
-
-
58149116803
-
Similarity searching using fingerprints of molecular fragments involved in protein-ligand interactions
-
Tan, L.; Lounkine, E.; Bajorath, J. Similarity searching using fingerprints of molecular fragments involved in protein-ligand interactions, J. Chem. Inf. Model. 2008, 48, 2308-2312
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 2308-2312
-
-
Tan, L.1
Lounkine, E.2
Bajorath, J.3
-
43
-
-
0033103478
-
Structure of acetylcholinesterase complexed with E2020 (Aricept): Implications for the design of new anti-Alzheimer drags
-
Kryger, G.; Silman, I.; Sussman, J. L. Structure of acetylcholinesterase complexed with E2020 (Aricept): implications for the design of new anti-Alzheimer drags. Structure 1999, 7, 297-307.
-
(1999)
Structure
, vol.7
, pp. 297-307
-
-
Kryger, G.1
Silman, I.2
Sussman, J.L.3
-
44
-
-
2542571016
-
Ultrahigh resolution drag design I: Details of interactions in human aldose reductaseinhibitor complex at 0.66 A
-
Howard, E. I.; Sanishvili, R.; Cachau, R. E.; Mitschler, A.; Chevrier, B.; Barth, P.; Lamour, V.; Van Zandt, M.; Sibley, E.; Bon, C.; Moras, D.; Schneider, T. R.; Joachimiak, A.; Podjarny, A. Ultrahigh resolution drag design I: details of interactions in human aldose reductaseinhibitor complex at 0.66 A. Proteins 2004, 55, 792-804.
-
(2004)
Proteins
, vol.55
, pp. 792-804
-
-
Howard, E.I.1
Sanishvili, R.2
Cachau, R.E.3
Mitschler, A.4
Chevrier, B.5
Barth, P.6
Lamour, V.7
Van Zandt, M.8
Sibley, E.9
Bon, C.10
Moras, D.11
Schneider, T.R.12
Joachimiak, A.13
Podjarny, A.14
-
45
-
-
0028331867
-
An anion binding site in human aldose reductase: Mechanistic implications for the binding of citrate, cacodylate, and glucose 6-phosphate
-
Harrison, D. H.; Bohren, K. M.; Ringe, D.; Petsko, G. A.; Gabbay, K. H. An anion binding site in human aldose reductase: mechanistic implications for the binding of citrate, cacodylate, and glucose 6-phosphate. Biochemistry 1994, 33, 2011-2020
-
(1994)
Biochemistry
, vol.33
, pp. 2011-2020
-
-
Harrison, D.H.1
Bohren, K.M.2
Ringe, D.3
Petsko, G.A.4
Gabbay, K.H.5
-
46
-
-
0021323690
-
N-[5-(ttifluoromethyl)6-methoxy- L-naphthalenyl]thioxomethyl- N-methylglycine (Tolrestat), a potent, orally active aldose reductase inhibitor
-
Sestanj, K.; Bellini, F.; Fung, S.; Abraham, N.; Treasurywala, A.; Humber, L.; Simard-Duquesne, N.; Dvornik, D. N-[5-(ttifluoromethyl)6-methoxy- l-naphthalenyl]thioxomethyl]- N-methylglycine (Tolrestat), a potent, orally active aldose reductase inhibitor. J. Med. Chem. 1984, 27, 255-256
-
(1984)
J. Med. Chem.
, vol.27
, pp. 255-256
-
-
Sestanj, K.1
Bellini, F.2
Fung, S.3
Abraham, N.4
Treasurywala, A.5
Humber, L.6
Simard-Duquesne, N.7
Dvornik, D.8
-
47
-
-
0033920645
-
A potent aldose reductase inhibitor, (2S,4S)-6-fluoro-2', 5'-dioxospiro[chroman-4,4'-imidazolidine]-2-carboxamide (Fidarestat): Its absolute configuration and interactions with the aldose reductase by X-ray crystallography
-
Oka, M.; Matsumoto, Y.; Sugiyama, S.; Tsurata, N.; Matsushima, M. A potent aldose reductase inhibitor, (2S,4S)-6-fluoro-2', 5'-dioxospiro[chroman-4, 4'-imidazolidine]-2-carboxamide (Fidarestat): its absolute configuration and interactions with the aldose reductase by X-ray crystallography. J. Med Chem. 2000, 43, 2479-2483
-
(2000)
J. Med Chem.
, vol.43
, pp. 2479-2483
-
-
Oka, M.1
Matsumoto, Y.2
Sugiyama, S.3
Tsurata, N.4
Matsushima, M.5
-
48
-
-
0034212669
-
-
Carlson, H. A.; Masukawa, K. M.; Rubins, K.; Bushman, F. D.; Jorgensen, W. L.; Lins, R. D.; Briggs, J. M.; McCammon, J. A. Developing a dynamic pharmacophore model for HIV-1 integrase. J. Med. Chem. 2000, 43, 2100-2114
-
(2000)
Developing A Dynamic Pharmacophore Model for HIV-1 Integrase. J. Med. Chem.
, vol.43
, pp. 2100-2114
-
-
Carlson, H.A.1
Masukawa, K.M.2
Rubins, K.3
Bushman, F.D.4
Jorgensen, W.L.5
Lins, R.D.6
Briggs, J.M.7
McCammon, J.A.8
-
49
-
-
5444268798
-
Influenza virus neuraminidase inhibitors: Generation and comparison of structure-based and common feature pharmacophore hypotheses and their application in virtual screening
-
Steindl, T.; Langer, T. Influenza virus neuraminidase inhibitors: generation and comparison of structure-based and common feature pharmacophore hypotheses and their application in virtual screening. J. Chem. Inf. Comput. Sci. 2004, 44, 1849-1856
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 1849-1856
-
-
Steindl, T.1
Langer, T.2
-
50
-
-
0032474911
-
Pharmacophores incorporating numerous excluded volumes defined by X-ray crystallographic structure in three-dimensional database searching: Application to the thyroid hormone receptor
-
DOI 10.1021/jm9708691
-
(50) Greenidge, P. A.; Carlsson, B.; Bladh, L. G.; Gillner, M. Pharmacophores incorporating numerous excluded volumes defined by X-ray crystallographic structure in three-dimensional database searching: application to the thyroid hormone receptor. J. Med. Chem. 1998, 41, 2503-2512 (Pubitemid 28321900)
-
(1998)
Journal of Medicinal Chemistry
, vol.41
, Issue.14
, pp. 2503-2512
-
-
Greenidge, P.A.1
Carlsson, B.2
Bladh, L.-G.3
Gillner, M.4
-
51
-
-
67651002876
-
Energetic analysis of fragment docking and application to structure-based pharmacophore hypothesis generation
-
Loving, K.; Salam, N. K.; Sherman, W. Energetic analysis of fragment docking and application to structure-based pharmacophore hypothesis generation. J. Comput.-Aided Mol. Des. 2009.
-
(2009)
J. Comput.-Aided Mol. Des.
-
-
Loving, K.1
Salam, N.K.2
Sherman, W.3
-
52
-
-
41349093325
-
Multiple protein structures and multiple ligands: Effects on the apparent goodness of virtual screening results
-
Sheridan, R. P.; McGaughey, G. B.; Cornell, W. D. Multiple protein structures and multiple ligands: effects on the apparent goodness of virtual screening results. J. Comput.-Aided Mol. Des. 2008, 22, 257-265
-
(2008)
J. Comput.-Aided Mol. Des.
, vol.22
, pp. 257-265
-
-
Sheridan, R.P.1
McGaughey, G.B.2
Cornell, W.D.3
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