메뉴 건너뛰기




Volumn 49, Issue , 2015, Pages 213-242

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome

Author keywords

Genome duplication; MiRBase; MirGeneDB; MiRNA; Molecular evolution; Vertebrate

Indexed keywords

MICRORNA; NUCLEOTIDE;

EID: 84948749911     PISSN: 00664197     EISSN: 15452948     Source Type: Book Series    
DOI: 10.1146/annurev-genet-120213-092023     Document Type: Article
Times cited : (424)

References (157)
  • 1
    • 84906258538 scopus 로고    scopus 로고
    • Aberrant regulation and function of microRNAs in cancer
    • Adams BD, Kasinski AL, Slack FJ. 2014. Aberrant regulation and function of microRNAs in cancer. Curr. Biol. 24:R762-76
    • (2014) Curr. Biol , vol.24 , pp. R762-R776
    • Adams, B.D.1    Kasinski, A.L.2    Slack, F.J.3
  • 2
    • 28044471565 scopus 로고    scopus 로고
    • MicroRNA functions in animal development and human disease
    • Alvarez-Garcia I, Miska EA. 2005. MicroRNA functions in animal development and human disease. Development 132:4653-62
    • (2005) Development , vol.132 , pp. 4653-4662
    • Alvarez-Garcia, I.1    Miska, E.A.2
  • 4
    • 84887706233 scopus 로고    scopus 로고
    • Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
    • Aure MR, Leivonen SK, Fleischer T, Zhu Q, Overgaard J, et al. 2013. Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors. Genome Biol. 14:R126
    • (2013) Genome Biol , vol.14 , pp. R126
    • Aure, M.R.1    Leivonen, S.K.2    Fleischer, T.3    Zhu, Q.4    Overgaard, J.5
  • 5
    • 79955379930 scopus 로고    scopus 로고
    • Vive la difference: Biogenesis and evolution of microRNAs in plants and animals
    • Axtell MJ, Westholm JO, Lai EC. 2011. Vive la difference: biogenesis and evolution of microRNAs in plants and animals. Genome Biol. 12:221
    • (2011) Genome Biol , vol.12 , pp. 221
    • Axtell, M.J.1    Westholm, J.O.2    Lai, E.C.3
  • 6
    • 84869219338 scopus 로고    scopus 로고
    • MiR-34-A microRNA replacement therapy is headed to the clinic
    • Bader AG. 2012. miR-34-A microRNA replacement therapy is headed to the clinic. Front. Genet. 3:120
    • (2012) Front. Genet , vol.3 , pp. 120
    • Bader, A.G.1
  • 7
    • 84906826273 scopus 로고    scopus 로고
    • Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    • Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, et al. 2014. Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus. BMC Genomics 15:736
    • (2014) BMC Genomics , vol.15 , pp. 736
    • Bai, Y.1    Zhang, Z.2    Jin, L.3    Kang, H.4    Zhu, Y.5
  • 8
    • 84923197477 scopus 로고    scopus 로고
    • TCL1 targeting miR-3676 is codeleted with tumor protein p53 in chronic lymphocytic leukemia
    • Balatti V, Rizzotto L, Miller C, Palamarchuk A, Fadda P, et al. 2015. TCL1 targeting miR-3676 is codeleted with tumor protein p53 in chronic lymphocytic leukemia. PNAS 112:2169-74
    • (2015) PNAS , vol.112 , pp. 2169-2174
    • Balatti, V.1    Rizzotto, L.2    Miller, C.3    Palamarchuk, A.4    Fadda, P.5
  • 9
    • 84899513644 scopus 로고    scopus 로고
    • Global coevolution of human microRNAs and their target genes
    • Barbash S, Shifman S, Soreq H. 2014. Global coevolution of human microRNAs and their target genes. Mol. Biol. Evol. 31:1237-47
    • (2014) Mol. Biol. Evol , vol.31 , pp. 1237-1247
    • Barbash, S.1    Shifman, S.2    Soreq, H.3
  • 10
    • 84862179132 scopus 로고    scopus 로고
    • BioProject and BioSample databases at NCBI: Facilitating capture and organization of metadata
    • Barrett T, Clark K, Gevorgyan R, Gorelenkov V, Gribov E, et al. 2012. BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res. 40:D57-63
    • (2012) Nucleic Acids Res , vol.40 , pp. D57-63
    • Barrett, T.1    Clark, K.2    Gevorgyan, R.3    Gorelenkov, V.4    Gribov, E.5
  • 11
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: Target recognition and regulatory functions
    • Bartel DP. 2009. MicroRNAs: target recognition and regulatory functions. Cell 136:215-33
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 12
    • 77649201708 scopus 로고    scopus 로고
    • Expression profiling of microRNA using real-time quantitative PCR, how to use it and what is available
    • Benes V, Castoldi M. 2010. Expression profiling of microRNA using real-time quantitative PCR, how to use it and what is available. Methods 50:244-49
    • (2010) Methods , vol.50 , pp. 244-249
    • Benes, V.1    Castoldi, M.2
  • 13
    • 81355123438 scopus 로고    scopus 로고
    • Evolution of microRNA diversity and regulation in animals
    • Berezikov E. 2011. Evolution of microRNA diversity and regulation in animals. Nat. Rev. Genet. 12:846-60
    • (2011) Nat. Rev. Genet , vol.12 , pp. 846-860
    • Berezikov, E.1
  • 14
    • 79551586302 scopus 로고    scopus 로고
    • Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    • Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, et al. 2011. Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Res. 21:203-15
    • (2011) Genome Res , vol.21 , pp. 203-215
    • Berezikov, E.1    Robine, N.2    Samsonova, A.3    Westholm, J.O.4    Naqvi, A.5
  • 16
    • 84885065624 scopus 로고    scopus 로고
    • First microRNA mimic enters clinic
    • Bouchie A. 2013. First microRNA mimic enters clinic. Nat. Biotechnol. 31:577
    • (2013) Nat. Biotechnol , vol.31 , pp. 577
    • Bouchie, A.1
  • 18
    • 84959515860 scopus 로고    scopus 로고
    • MicroRNA nomenclature and the need for a revised naming prescription
    • BudakH, Bulut R. 2015. MicroRNA nomenclature and the need for a revised naming prescription. Brief. Funct. Genomics doi:10.1093/bfgp/elv026
    • (2015) Brief. Funct. Genomics
    • Budak, H.1    Bulut, R.2
  • 19
    • 33750370444 scopus 로고    scopus 로고
    • MicroRNA signatures in human cancers
    • Calin GA, Croce CM. 2006. MicroRNA signatures in human cancers. Nat. Rev. Cancer 6:857-66
    • (2006) Nat. Rev. Cancer , vol.6 , pp. 857-866
    • Calin, G.A.1    Croce, C.M.2
  • 21
    • 84863198374 scopus 로고    scopus 로고
    • MiR-129-3p controls cilia assembly by regulating CP110 and actin dynamics
    • Cao J, Shen Y, Zhu L, Xu Y, Zhou Y, et al. 2012. miR-129-3p controls cilia assembly by regulating CP110 and actin dynamics. Nat. Cell Biol. 14:697-706
    • (2012) Nat. Cell Biol , vol.14 , pp. 697-706
    • Cao, J.1    Shen, Y.2    Zhu, L.3    Xu, Y.4    Zhou, Y.5
  • 22
    • 84876374428 scopus 로고    scopus 로고
    • Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
    • Castellano L, Stebbing J. 2013. Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues. Nucleic Acids Res. 41:3339-51
    • (2013) Nucleic Acids Res , vol.41 , pp. 3339-3351
    • Castellano, L.1    Stebbing, J.2
  • 23
    • 84897128298 scopus 로고    scopus 로고
    • The noncoding RNA revolution-trashing old rules to forge new ones
    • Cech TR, Steitz JA. 2014. The noncoding RNA revolution-trashing old rules to forge new ones. Cell 157:77-94
    • (2014) Cell , vol.157 , pp. 77-94
    • Cech, T.R.1    Steitz, J.A.2
  • 24
    • 77953183812 scopus 로고    scopus 로고
    • A Dicer-independent miRNA biogenesis pathway that requires Ago catalysis
    • Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ. 2010. A Dicer-independent miRNA biogenesis pathway that requires Ago catalysis. Nature 465:584-89
    • (2010) Nature , vol.465 , pp. 584-589
    • Cheloufi, S.1    Dos Santos, C.O.2    Chong, M.M.3    Hannon, G.J.4
  • 25
    • 77952368550 scopus 로고    scopus 로고
    • Mammalian microRNAs: Experimental evaluation of novel and previously annotated genes
    • Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, et al. 2010. Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev. 24:992-1009
    • (2010) Genes Dev , vol.24 , pp. 992-1009
    • Chiang, H.R.1    Schoenfeld, L.W.2    Ruby, J.G.3    Auyeung, V.C.4    Spies, N.5
  • 26
    • 77953897182 scopus 로고    scopus 로고
    • A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity
    • Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, et al. 2010. A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity. Science 328:1694-98
    • (2010) Science , vol.328 , pp. 1694-1698
    • Cifuentes, D.1    Xue, H.2    Taylor, D.W.3    Patnode, H.4    Mishima, Y.5
  • 27
    • 84925116268 scopus 로고    scopus 로고
    • Re-thinking miRNA-mRNA interactions: Intertwining issues confound target discovery
    • Cloonan N. 2015. Re-thinking miRNA-mRNA interactions: intertwining issues confound target discovery. BioEssays 37:379-88
    • (2015) BioEssays , vol.37 , pp. 379-388
    • Cloonan, N.1
  • 30
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • Dehal P, Boore JL. 2005. Two rounds of whole genome duplication in the ancestral vertebrate. PLOS Biol. 3:e314
    • (2005) PLOS Biol , vol.3 , pp. e314
    • Dehal, P.1    Boore, J.L.2
  • 31
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • Delsuc F, Brinkman H, Chourrout D, Philippe H. 2006. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439:965-68
    • (2006) Nature , vol.439 , pp. 965-968
    • Delsuc, F.1    Brinkman, H.2    Chourrout, D.3    Philippe, H.4
  • 32
    • 85019278680 scopus 로고    scopus 로고
    • MicroRNA expression patterns across seven cancers are highly correlated and dominated by evolutionarily ancient families
    • Devor EJ, Schickling BM, Leslie KK. 2014. MicroRNA expression patterns across seven cancers are highly correlated and dominated by evolutionarily ancient families. Biomed. Rep. 2:384-87
    • (2014) Biomed. Rep , vol.2 , pp. 384-387
    • Devor, E.J.1    Schickling, B.M.2    Leslie, K.K.3
  • 33
    • 70350705948 scopus 로고    scopus 로고
    • Repertoire and evolution of miRNA genes in four divergent nematode species
    • de Wit E, Linsen SEV, Cuppen E, Berezikov E. 2009. Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res. 19:2064-74
    • (2009) Genome Res , vol.19 , pp. 2064-2074
    • De Wit, E.1    Linsen, S.E.V.2    Cuppen, E.3    Berezikov, E.4
  • 35
    • 84864346710 scopus 로고    scopus 로고
    • Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
    • dos Reis M, Inoue J, Hasegawa M, Asher RJ, Donoghue PCJ, Yang Z. 2012. Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny. Proc. R. Soc. B 279:3491-500
    • (2012) Proc. R. Soc. B , vol.279 , pp. 3491-3500
    • Dos Reis, M.1    Inoue, J.2    Hasegawa, M.3    Asher, R.J.4    Donoghue, P.C.J.5    Yang, Z.6
  • 36
    • 84878113369 scopus 로고    scopus 로고
    • The shaping and functional consequences of the microRNA landscape in breast cancer
    • Dvinge H, Git A, Graf S, Salmon-Divon M, Curtis C, et al. 2013. The shaping and functional consequences of the microRNA landscape in breast cancer. Nature 497:378-82
    • (2013) Nature , vol.497 , pp. 378-382
    • Dvinge, H.1    Git, A.2    Graf, S.3    Salmon-Divon, M.4    Curtis, C.5
  • 37
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium
    • ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489:57-74
    • (2012) Nature , vol.489 , pp. 57-74
  • 38
    • 82255195530 scopus 로고    scopus 로고
    • The Cambrian conundrum: Early divergence and later ecological success in the early history of animals
    • Erwin DH, LaFlamme M, Tweedt SM, Sperling EA, Pisani D, Peterson KJ. 2011. The Cambrian conundrum: early divergence and later ecological success in the early history of animals. Science 334:1091-97
    • (2011) Science , vol.334 , pp. 1091-1097
    • Erwin, D.H.1    LaFlamme, M.2    Tweedt, S.M.3    Sperling, E.A.4    Pisani, D.5    Peterson, K.J.6
  • 40
    • 84895895949 scopus 로고    scopus 로고
    • Transcriptome-wide analysis of TDP-43 binding small RNAs identifies miR-NID1 (miR-8485), a novel miRNA that represses NRXN1 expression
    • Fan Z, Chen X, Chen R. 2014. Transcriptome-wide analysis of TDP-43 binding small RNAs identifies miR-NID1 (miR-8485), a novel miRNA that represses NRXN1 expression. Genomics 103:76-82
    • (2014) Genomics , vol.103 , pp. 76-82
    • Fan, Z.1    Chen, X.2    Chen, R.3
  • 41
    • 84903880424 scopus 로고    scopus 로고
    • Toward consilience in reptile phylogeny: MiRNAs support an archosaur, not lepidosaur, affinity for turtles
    • Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ. 2014. Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles. Evol. Dev. 16:189-96
    • (2014) Evol. Dev , vol.16 , pp. 189-196
    • Field, D.J.1    Gauthier, J.A.2    King, B.L.3    Pisani, D.4    Lyson, T.R.5    Peterson, K.J.6
  • 42
    • 77953479619 scopus 로고    scopus 로고
    • Structural basis for 5-nucleotide base-specific recognition of guide RNA by human AGO2
    • Frank F, Sonenberg N, Nagar B. 2010. Structural basis for 5-nucleotide base-specific recognition of guide RNA by human AGO2. Nature 465:818-22
    • (2010) Nature , vol.465 , pp. 818-822
    • Frank, F.1    Sonenberg, N.2    Nagar, B.3
  • 44
    • 84908502706 scopus 로고    scopus 로고
    • MicroRNA loci support conspecificity of Gyrodactylus salaris and Gyrodactylus thymalli (Platyhelminthes: Monogenea)
    • Fromm B, Burow S, Hahn C, Bachmann L. 2014. MicroRNA loci support conspecificity of Gyrodactylus salaris and Gyrodactylus thymalli (Platyhelminthes: Monogenea). Int. J. Parasitol. 44:787-93
    • (2014) Int. J. Parasitol , vol.44 , pp. 787-793
    • Fromm, B.1    Burow, S.2    Hahn, C.3    Bachmann, L.4
  • 45
    • 84890412187 scopus 로고    scopus 로고
    • Substantial loss of conserved and gain of novel microRNA families in flatworms
    • Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L. 2013. Substantial loss of conserved and gain of novel microRNA families in flatworms. Mol. Biol. Evol. 30:2619-28
    • (2013) Mol. Biol. Evol , vol.30 , pp. 2619-2628
    • Fromm, B.1    Worren, M.M.2    Hahn, C.3    Hovig, E.4    Bachmann, L.5
  • 46
    • 84899693689 scopus 로고    scopus 로고
    • Phylogenetic analysis of the endoribonuclease Dicer family
    • Gao Z, Wang M, Blair D, Zheng Y, Dou Y. 2014. Phylogenetic analysis of the endoribonuclease Dicer family. PLOS ONE 9:e95350
    • (2014) PLOS ONE , vol.9 , pp. e95350
    • Gao, Z.1    Wang, M.2    Blair, D.3    Zheng, Y.4    Dou, Y.5
  • 47
    • 84865739425 scopus 로고    scopus 로고
    • Architecture of the human regulatory network derived from ENCODE data
    • Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, et al. 2012. Architecture of the human regulatory network derived from ENCODE data. Nature 489:91-100
    • (2012) Nature , vol.489 , pp. 91-100
    • Gerstein, M.B.1    Kundaje, A.2    Hariharan, M.3    Landt, S.G.4    Yan, K.K.5
  • 48
    • 80053649204 scopus 로고    scopus 로고
    • TRNA: Vast reservoir of RNA molecules with unexpected regulatory function
    • Geslain R, Pan T. 2011. tRNA: vast reservoir of RNA molecules with unexpected regulatory function. PNAS 108:16489-90
    • (2011) PNAS , vol.108 , pp. 16489-16490
    • Geslain, R.1    Pan, T.2
  • 49
    • 75649129754 scopus 로고    scopus 로고
    • Sorting of Drosophila small silencing RNAs partitions microRNA∗ Strands into the RNA interference pathway
    • Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD. 2010. Sorting of Drosophila small silencing RNAs partitions microRNA∗ strands into the RNA interference pathway. RNA 16:43-56
    • (2010) RNA , vol.16 , pp. 43-56
    • Ghildiyal, M.1    Xu, J.2    Seitz, H.3    Weng, Z.4    Zamore, P.D.5
  • 50
    • 84922482278 scopus 로고    scopus 로고
    • Whole-genome duplication in teleost fishes and its evolutionary consequences
    • Glasauer SM, Neuhauss SC. 2014. Whole-genome duplication in teleost fishes and its evolutionary consequences. Mol. Genet. Genomics 289:1045-60
    • (2014) Mol. Genet. Genomics , vol.289 , pp. 1045-1060
    • Glasauer, S.M.1    Neuhauss, S.C.2
  • 51
    • 84928975328 scopus 로고    scopus 로고
    • Endogenous tRNA-derived fragments suppress breast cancer progression via YBX1 displacement
    • Goodarzi H, Liu X, Nguyen HC, Zhang S, Fish L, Tavazoie SF. 2015. Endogenous tRNA-derived fragments suppress breast cancer progression via YBX1 displacement. Cell 161:790-802
    • (2015) Cell , vol.161 , pp. 790-802
    • Goodarzi, H.1    Liu, X.2    Nguyen, H.C.3    Zhang, S.4    Fish, L.5    Tavazoie, S.F.6
  • 52
    • 84875275808 scopus 로고    scopus 로고
    • On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE
    • Graur D, Zheng Y, Price N, Azevedo RB, Zufall RA, Elhaik E. 2013. On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE. Genome Biol. Evol. 5:578-90
    • (2013) Genome Biol. Evol , vol.5 , pp. 578-590
    • Graur, D.1    Zheng, Y.2    Price, N.3    Azevedo, R.B.4    Zufall, R.A.5    Elhaik, E.6
  • 56
    • 55249115975 scopus 로고    scopus 로고
    • Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    • Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, et al. 2008. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 455:1193-97
    • (2008) Nature , vol.455 , pp. 1193-1197
    • Grimson, A.1    Srivastava, M.2    Fahey, B.3    Woodcroft, B.J.4    Chiang, H.R.5
  • 58
    • 77955328547 scopus 로고    scopus 로고
    • The fate of miRNA∗ Strand through evolutionary analysis: Implication for degradation as merely carrier strand or potential regulatory molecule
    • Guo L, Lu ZH. 2010. The fate of miRNA∗ strand through evolutionary analysis: implication for degradation as merely carrier strand or potential regulatory molecule? PLOS ONE 5:e11387
    • (2010) PLOS ONE , vol.5 , pp. e11387
    • Guo, L.1    Lu, Z.H.2
  • 59
    • 84929649193 scopus 로고    scopus 로고
    • Evolutionary and expression analysis of miR-#-5p and miR-#-3p at the miRNAs/isomiRs levels
    • Guo L, Yu J, Yu H, Zhao Y, Chen S, et al. 2015. Evolutionary and expression analysis of miR-#-5p and miR-#-3p at the miRNAs/isomiRs levels. BioMed Res. Int. 2015:168358
    • (2015) BioMed Res. Int , vol.2015 , pp. 168358
    • Guo, L.1    Yu, J.2    Yu, H.3    Zhao, Y.4    Chen, S.5
  • 60
    • 77950920903 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
    • Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, et al. 2010. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141:129-41
    • (2010) Cell , vol.141 , pp. 129-141
    • Hafner, M.1    Landthaler, M.2    Burger, L.3    Khorshid, M.4    Hausser, J.5
  • 61
    • 84887641104 scopus 로고    scopus 로고
    • Identification of a pancancer oncogenic microRNA superfamily anchored by a central core seed motif
    • Hamilton MP, Rajapakshe K, Hartig SM, Reva B, McLellan MD, et al. 2013. Identification of a pancancer oncogenic microRNA superfamily anchored by a central core seed motif. Nat. Commun. 4:2730
    • (2013) Nat. Commun , vol.4 , pp. 2730
    • Hamilton, M.P.1    Rajapakshe, K.2    Hartig, S.M.3    Reva, B.4    McLellan, M.D.5
  • 62
    • 79956087842 scopus 로고    scopus 로고
    • Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis
    • Hansen TB, Kjems J, Bramsen JB. 2011. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. RNA Biol. 8:378-83
    • (2011) RNA Biol , vol.8 , pp. 378-383
    • Hansen, T.B.1    Kjems, J.2    Bramsen, J.B.3
  • 63
    • 78650592620 scopus 로고    scopus 로고
    • MicroRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    • Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ. 2010. MicroRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate. PNAS 107:19379-83
    • (2010) PNAS , vol.107 , pp. 19379-19383
    • Heimberg, A.M.1    Cowper-Sal-Lari, R.2    Semon, M.3    Donoghue, P.C.4    Peterson, K.J.5
  • 65
    • 84876935138 scopus 로고    scopus 로고
    • Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
    • Helwak A, Kudla G, Dudnakova T, Tollervey D. 2013. Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell 153:654-65
    • (2013) Cell , vol.153 , pp. 654-665
    • Helwak, A.1    Kudla, G.2    Dudnakova, T.3    Tollervey, D.4
  • 66
    • 84860708360 scopus 로고    scopus 로고
    • Evolution of the let-7 microRNA family
    • Stud Bioinform. Comput. Lab Stadler PF.
    • Hertel J, Bartschat S, Wintsche A, Otto C, Stud Bioinform. Comput. Lab, Stadler PF. 2012. Evolution of the let-7 microRNA family. RNA Biol. 9:231-41
    • (2012) RNA Biol , vol.9 , pp. 231-241
    • Hertel, J.1    Bartschat, S.2    Wintsche, A.3    Otto, C.4
  • 68
    • 84924658050 scopus 로고    scopus 로고
    • The expansion of animal microRNA families revisited
    • Hertel J, Stadler PF. 2015. The expansion of animal microRNA families revisited. Life 5:905-20
    • (2015) Life , vol.5 , pp. 905-920
    • Hertel, J.1    Stadler, P.F.2
  • 69
    • 84918770022 scopus 로고    scopus 로고
    • Functional and evolutionary significance of human microRNA seed region mutations
    • Hill CG, Jabbari N, Matyunina LV, McDonald JF. 2014. Functional and evolutionary significance of human microRNA seed region mutations. PLOS ONE 9:e115241
    • (2014) PLOS ONE , vol.9 , pp. e115241
    • Hill, C.G.1    Jabbari, N.2    Matyunina, L.V.3    McDonald, J.F.4
  • 70
    • 70350271175 scopus 로고    scopus 로고
    • Sequence features associated with microRNA strand selection in humans and flies
    • Hu HY, Yan Z, Xu Y, Hu H, Menzel C, et al. 2009. Sequence features associated with microRNA strand selection in humans and flies. BMC Genomics 10:413
    • (2009) BMC Genomics , vol.10 , pp. 413
    • Hu, H.Y.1    Yan, Z.2    Xu, Y.3    Hu, H.4    Menzel, C.5
  • 71
    • 84924579072 scopus 로고    scopus 로고
    • MiR-CLIP capture of a miRNA targetome uncovers a lincRNA H19-miR-106a interaction
    • Imig J, Brunschweiger A, Brummer A, Guennewig B, Mittal N, et al. 2015. miR-CLIP capture of a miRNA targetome uncovers a lincRNA H19-miR-106a interaction. Nat. Chem. Biol. 11:107-14
    • (2015) Nat. Chem. Biol , vol.11 , pp. 107-114
    • Imig, J.1    Brunschweiger, A.2    Brummer, A.3    Guennewig, B.4    Mittal, N.5
  • 72
    • 84858126071 scopus 로고    scopus 로고
    • MicroRNA dysregulation in cancer: Diagnostics, monitoring and therapeutics A comprehensive review
    • Iorio MV, Croce CM. 2012. MicroRNA dysregulation in cancer: diagnostics, monitoring and therapeutics. A comprehensive review. EMBO Mol. Med. 4:143-59
    • (2012) EMBO Mol. Med , vol.4 , pp. 143-159
    • Iorio, M.V.1    Croce, C.M.2
  • 73
    • 84873607017 scopus 로고    scopus 로고
    • Human microRNAs originated from two periods at accelerated rates in mammalian evolution
    • Iwama H, Kato K, Imachi H, Murao K, Masaki T. 2013. Human microRNAs originated from two periods at accelerated rates in mammalian evolution. Mol. Biol. Evol. 30:613-26
    • (2013) Mol. Biol. Evol , vol.30 , pp. 613-626
    • Iwama, H.1    Kato, K.2    Imachi, H.3    Murao, K.4    Masaki, T.5
  • 74
    • 84924063355 scopus 로고    scopus 로고
    • The landscape of long noncoding RNAs in the human transcriptome
    • Iyer MK, Niknafs YS, Malik R, Singhal U, Sahu A, et al. 2015. The landscape of long noncoding RNAs in the human transcriptome. Nat. Genet. 47:199-208
    • (2015) Nat. Genet , vol.47 , pp. 199-208
    • Iyer, M.K.1    Niknafs, Y.S.2    Malik, R.3    Singhal, U.4    Sahu, A.5
  • 75
    • 78650972252 scopus 로고    scopus 로고
    • Formation, regulation and evolution of Caenorhabditis elegans 3-UTRs
    • Jan CH, Friedman RC, Ruby JG, Bartel DP. 2011. Formation, regulation and evolution of Caenorhabditis elegans 3-UTRs. Nature 469:97-101
    • (2011) Nature , vol.469 , pp. 97-101
    • Jan, C.H.1    Friedman, R.C.2    Ruby, J.G.3    Bartel, D.P.4
  • 76
    • 84931572130 scopus 로고    scopus 로고
    • Towards a molecular understanding of microRNA-mediated gene silencing
    • Jonas S, Izaurralde E. 2015. Towards a molecular understanding of microRNA-mediated gene silencing. Nat. Rev. Genet. 16:421-33
    • (2015) Nat. Rev. Genet , vol.16 , pp. 421-433
    • Jonas, S.1    Izaurralde, E.2
  • 77
    • 84865423169 scopus 로고    scopus 로고
    • Conservation and divergence in plant microRNAs
    • Jones-Rhoades MW. 2012. Conservation and divergence in plant microRNAs. Plant Mol. Biol. 80:3-16
    • (2012) Plant Mol. Biol , vol.80 , pp. 3-16
    • Jones-Rhoades, M.W.1
  • 78
    • 84955188943 scopus 로고    scopus 로고
    • Draft genome assemblies and predicted microRNA complements of the intertidal lophotrochozoans Patella vulgata (Mollusca, Patellogastropoda) and Spirobranchus (Pomatoceros) lamarcki (Annelida, Serpulida)
    • In press
    • Kenny NJ, Namigai EKO, Marletaz F, Hui JHL, Shimeld SM. 2015. Draft genome assemblies and predicted microRNA complements of the intertidal lophotrochozoans Patella vulgata (Mollusca, Patellogastropoda) and Spirobranchus (Pomatoceros) lamarcki (Annelida, Serpulida). Marine Genomics. In press
    • (2015) Marine Genomics
    • Kenny, N.J.1    Namigai, E.K.O.2    Marletaz, F.3    Hui, J.H.L.4    Shimeld, S.M.5
  • 79
    • 84923197991 scopus 로고    scopus 로고
    • The phylogenetic utility and functional constraint of microRNA flanking sequence
    • Kenny NJ, SinYW,Hayward A, Paps J, Chu KH, Hui JHL. 2015. The phylogenetic utility and functional constraint of microRNA flanking sequence. Proc. R. Soc. B 282:20142983
    • (2015) Proc. R. Soc. B , vol.282 , pp. 20142983
    • Kenny, N.J.1    Sin, Y.W.2    Hayward, A.3    Paps, J.4    Chu, K.H.5    Hui, J.H.L.6
  • 80
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova A, Reynolds A, Jayasena SD. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell 115:209-16
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 81
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S. 2011. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39:D152-57
    • (2011) Nucleic Acids Res , vol.39 , pp. D152-D157
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 82
    • 84891818318 scopus 로고    scopus 로고
    • MiRBase: Annotating high confidence microRNAs using deep sequencing data
    • Kozomara A, Griffiths-Jones S. 2014. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 42:D68-73
    • (2014) Nucleic Acids Res , vol.42 , pp. D68-73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 83
    • 4744357297 scopus 로고    scopus 로고
    • Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design
    • Krol J, Sobczak K, Wilczynska U, Drath M, Jasinska A, et al. 2004. Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design. J. Biol. Chem. 279:42230-39
    • (2004) J. Biol. Chem , vol.279 , pp. 42230-42239
    • Krol, J.1    Sobczak, K.2    Wilczynska, U.3    Drath, M.4    Jasinska, A.5
  • 84
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T. 2001. Identification of novel genes coding for small expressed RNAs. Science 294:853-58
    • (2001) Science , vol.294 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3    Tuschl, T.4
  • 86
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau NC, Lim LP, Weinstein EG, Bartel DP. 2001. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294:858-62
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 87
    • 0035955366 scopus 로고    scopus 로고
    • An extensive class of small RNAs in Caenorhabditis elegans
    • Lee RC, Ambros V. 2001. An extensive class of small RNAs in Caenorhabditis elegans. Science 294:862-64
    • (2001) Science , vol.294 , pp. 862-864
    • Lee, R.C.1    Ambros, V.2
  • 88
    • 72749089855 scopus 로고    scopus 로고
    • A novel class of small RNAs: TRNA-derived RNA fragments (tRFs)
    • Lee YS, Shibata Y, Malhotra A, Dutta A. 2009. A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev. 23:2639-49
    • (2009) Genes Dev , vol.23 , pp. 2639-2649
    • Lee, Y.S.1    Shibata, Y.2    Malhotra, A.3    Dutta, A.4
  • 89
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120:15-20
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 91
    • 84929902258 scopus 로고    scopus 로고
    • MicroRNA biogenesis pathways in cancer
    • Lin S, Gregory RI. 2015. MicroRNA biogenesis pathways in cancer. Nat. Rev. Cancer 15:321-33
    • (2015) Nat. Rev. Cancer , vol.15 , pp. 321-333
    • Lin, S.1    Gregory, R.I.2
  • 92
    • 84887101163 scopus 로고    scopus 로고
    • MicroRNAs and other non-coding RNAs as targets for anticancer drug development
    • Ling H, Fabbri M, Calin GA. 2013. MicroRNAs and other non-coding RNAs as targets for anticancer drug development. Nat. Rev. Drug Discov. 12:847-65
    • (2013) Nat. Rev. Drug Discov , vol.12 , pp. 847-865
    • Ling, H.1    Fabbri, M.2    Calin, G.A.3
  • 93
  • 95
    • 84924388328 scopus 로고    scopus 로고
    • Analysis of 13 cell types reveals evidence for the expression of numerous novel primate-and tissue-specific microRNAs
    • Londin E, Loher P, Telonis AG, Quann K, Clark P, et al. 2015. Analysis of 13 cell types reveals evidence for the expression of numerous novel primate-and tissue-specific microRNAs. PNAS 112:E1106-15
    • (2015) PNAS , vol.112 , pp. E1106-E1115
    • Londin, E.1    Loher, P.2    Telonis, A.G.3    Quann, K.4    Clark, P.5
  • 96
    • 84904045942 scopus 로고    scopus 로고
    • MiR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment
    • Lopez JP, Lim R, Cruceanu C, Crapper L, Fasano C, et al. 2014. miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment. Nat. Med. 20:764-68
    • (2014) Nat. Med , vol.20 , pp. 764-768
    • Lopez, J.P.1    Lim, R.2    Cruceanu, C.3    Crapper, L.4    Fasano, C.5
  • 97
  • 99
    • 84925284068 scopus 로고    scopus 로고
    • Discovery and annotation of long noncoding RNAs
    • Mattick JS, Rinn JL. 2015. Discovery and annotation of long noncoding RNAs. Nat. Struct. Mol. Biol. 22:5-7
    • (2015) Nat. Struct. Mol. Biol , vol.22 , pp. 5-7
    • Mattick, J.S.1    Rinn, J.L.2
  • 100
    • 84858379476 scopus 로고    scopus 로고
    • MicroRNAs in stress signaling and human disease
    • Mendell JT, Olson EN. 2012. MicroRNAs in stress signaling and human disease. Cell 148:1172-87
    • (2012) Cell , vol.148 , pp. 1172-1187
    • Mendell, J.T.1    Olson, E.N.2
  • 101
    • 84860762769 scopus 로고    scopus 로고
    • Are all the miRBase-registered microRNAs true? A structureand expression-based re-examination in plants
    • Meng Y, Shao C, WangH, Chen M. 2012. Are all the miRBase-registered microRNAs true? A structureand expression-based re-examination in plants. RNA Biol. 9:249-53
    • (2012) RNA Biol , vol.9 , pp. 249-253
    • Meng, Y.1    Shao, C.2    Wang, H.3    Chen, M.4
  • 103
    • 85003053932 scopus 로고    scopus 로고
    • Concordant dysregulation of miR-5p and miR-3p arms of the same precursor microRNA may be a mechanism in inducing cell proliferation and tumorigenesis: A lung cancer study
    • Mitra R, Lin C-C, Eischen CM, Bandyopadhyay S, Zhao Z. 2015. Concordant dysregulation of miR-5p and miR-3p arms of the same precursor microRNA may be a mechanism in inducing cell proliferation and tumorigenesis: a lung cancer study. RNA 21:1055-65
    • (2015) RNA , vol.21 , pp. 1055-1065
    • Mitra, R.1    Lin, C.-C.2    Eischen, C.M.3    Bandyopadhyay, S.4    Zhao, Z.5
  • 104
    • 84890326326 scopus 로고    scopus 로고
    • The evolution of microRNA pathway protein components in Cnidaria
    • Moran Y, Praher D, Fredman D, Technau U. 2013. The evolution of microRNA pathway protein components in Cnidaria. Mol. Biol. Evol. 30:2541-52
    • (2013) Mol. Biol. Evol , vol.30 , pp. 2541-2552
    • Moran, Y.1    Praher, D.2    Fredman, D.3    Technau, U.4
  • 105
    • 41649106136 scopus 로고    scopus 로고
    • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    • Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. 2008. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res. 18:610-21
    • (2008) Genome Res , vol.18 , pp. 610-621
    • Morin, R.D.1    O'Connor, M.D.2    Griffith, M.3    Kuchenbauer, F.4    Delaney, A.5
  • 107
    • 84873606896 scopus 로고    scopus 로고
    • Evolution of animal and plant Dicers: Early parallel duplications and recurrent adaptation of antiviral RNA binding in plants
    • Mukherjee K, Campos H, Kolaczkowski B. 2013. Evolution of animal and plant Dicers: early parallel duplications and recurrent adaptation of antiviral RNA binding in plants. Mol. Biol. Evol. 30:627-41
    • (2013) Mol. Biol. Evol , vol.30 , pp. 627-641
    • Mukherjee, K.1    Campos, H.2    Kolaczkowski, B.3
  • 108
    • 84927598498 scopus 로고    scopus 로고
    • IsomiRage: From functional classification to differential expression of miRNA isoforms
    • MullerH, Marzi MJ,Nicassio F. 2014. IsomiRage: from functional classification to differential expression of miRNA isoforms. Front. Bioeng. Biotechnol. 2:38
    • (2014) Front. Bioeng. Biotechnol , vol.2 , pp. 38
    • Muller, H.1    Marzi, M.J.2    Nicassio, F.3
  • 109
    • 66949150988 scopus 로고    scopus 로고
    • MiR-92b and miR-9/9∗ Are specifically expressed in brain primary tumors and can be used to differentiate primary from metastatic brain tumors
    • Nass D, Rosenwald S, Meiri E, Gilad S, Tabibian-Keissar H, et al. 2009. miR-92b and miR-9/9∗ are specifically expressed in brain primary tumors and can be used to differentiate primary from metastatic brain tumors. Brain Pathol. 19:375-83
    • (2009) Brain Pathol , vol.19 , pp. 375-383
    • Nass, D.1    Rosenwald, S.2    Meiri, E.3    Gilad, S.4    Tabibian-Keissar, H.5
  • 110
    • 84865302928 scopus 로고    scopus 로고
    • Resolution of ray-finned fish phylogeny and timing of diversification
    • Near TJ, Eytan RI, Dornburg A, Kuhn KL, Moore JA, et al. 2012. Resolution of ray-finned fish phylogeny and timing of diversification. PNAS 109:13698-703
    • (2012) PNAS , vol.109 , pp. 13698-13703
    • Near, T.J.1    Eytan, R.I.2    Dornburg, A.3    Kuhn, K.L.4    Moore, J.A.5
  • 111
    • 84867736206 scopus 로고    scopus 로고
    • IsomiRs\-The overlooked repertoire in the dynamic microRNAome
    • Neilsen CT, Goodall GJ, Bracken CP. 2012. IsomiRs\-The overlooked repertoire in the dynamic microRNAome. Trends Genet. 28:544-49
    • (2012) Trends Genet , vol.28 , pp. 544-549
    • Neilsen, C.T.1    Goodall, G.J.2    Bracken, C.P.3
  • 112
    • 84930478808 scopus 로고    scopus 로고
    • Functional anatomy of the human microprocessor
    • Nguyen TA, Jo MH, Choi YG, Park J, Kwon SC, et al. 2015. Functional anatomy of the human microprocessor. Cell 161:1374-87
    • (2015) Cell , vol.161 , pp. 1374-1387
    • Nguyen, T.A.1    Jo, M.H.2    Choi, Y.G.3    Park, J.4    Kwon, S.C.5
  • 113
    • 84876591872 scopus 로고    scopus 로고
    • Multiple sensors ensure guide strand selection in human RNAi pathways
    • Noland CL, Doudna JA. 2013. Multiple sensors ensure guide strand selection in human RNAi pathways. RNA 19:639-48
    • (2013) RNA , vol.19 , pp. 639-648
    • Noland, C.L.1    Doudna, J.A.2
  • 114
    • 77958462907 scopus 로고    scopus 로고
    • Origins and evolution of microRNA genes in Drosophila species
    • Nozawa M, Miura S, Nei M. 2010. Origins and evolution of microRNA genes in Drosophila species. Genome Biol. Evol. 2:180-89
    • (2010) Genome Biol. Evol , vol.2 , pp. 180-189
    • Nozawa, M.1    Miura, S.2    Nei, M.3
  • 116
    • 41649089309 scopus 로고    scopus 로고
    • The regulatory activity of microRNA star species has substantial influence on microRNA and 3-UTR evolution
    • Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, Lai EC. 2008. The regulatory activity of microRNA star species has substantial influence on microRNA and 3-UTR evolution. Nat. Struct. Mol. Biol. 15:354-63
    • (2008) Nat. Struct. Mol. Biol , vol.15 , pp. 354-363
    • Okamura, K.1    Phillips, M.D.2    Tyler, D.M.3    Duan, H.4    Chou, Y.T.5    Lai, E.C.6
  • 117
    • 84929645894 scopus 로고    scopus 로고
    • Aburst ofmiRNAinnovation in the early evolution of butterflies and moths
    • Quah S, Hui JHL,HollandPWH.2015.Aburst ofmiRNAinnovation in the early evolution of butterflies and moths. Mol. Biol. Evol. 32:1161-74
    • (2015) Mol. Biol. Evol , vol.32 , pp. 1161-1174
    • Quah, S.1    Hui, J.H.L.2    Holland, P.W.H.3
  • 118
    • 58149375393 scopus 로고    scopus 로고
    • The bifunctional microRNA miR-9/miR-9∗ Regulates REST and CoREST and is downregulated in Huntington's disease
    • Packer AN, Xing Y,Harper SQ, Jones L, Davidson BL. 2008. The bifunctional microRNA miR-9/miR-9∗ regulates REST and CoREST and is downregulated in Huntington's disease. J. Neurosci. 28:14341-46
    • (2008) J. Neurosci , vol.28 , pp. 14341-14346
    • Packer, A.N.1    Xing, Y.2    Harper, S.Q.3    Jones, L.4    Davidson, B.L.5
  • 119
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. 2008. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet. 40:1413-15
    • (2008) Nat. Genet , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 120
    • 84865812140 scopus 로고    scopus 로고
    • ENCODE project writes eulogy for junk DNA
    • Pennisi E. 2012. ENCODE project writes eulogy for junk DNA. Science 337:1159-61
    • (2012) Science , vol.337 , pp. 1159-1161
    • Pennisi, E.1
  • 121
    • 70349320089 scopus 로고    scopus 로고
    • MicroRNAs and metazoan macroevolution: Insights into canalization, complexity, and the Cambrian explosion
    • Peterson KJ, Dietrich MR, McPeek MA. 2009. MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. BioEssays 31:736-47
    • (2009) BioEssays , vol.31 , pp. 736-747
    • Peterson, K.J.1    Dietrich, M.R.2    McPeek, M.A.3
  • 122
    • 79951478430 scopus 로고    scopus 로고
    • Acoelomorph flatworms are deuterostomes related to Xenoturbella
    • Philippe H, Brinkmann H, Copley RR, Moroz LL, Nakano H, et al. 2011. Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature 470:255-58
    • (2011) Nature , vol.470 , pp. 255-258
    • Philippe, H.1    Brinkmann, H.2    Copley, R.R.3    Moroz, L.L.4    Nakano, H.5
  • 123
    • 33846052292 scopus 로고    scopus 로고
    • Evidence for a microRNA expansion in the bilaterian ancestor
    • Prochnik SE, Rokhsar DS, Aboobaker AA. 2007. Evidence for a microRNA expansion in the bilaterian ancestor. Dev. Genes Evol. 217:73-77
    • (2007) Dev. Genes Evol , vol.217 , pp. 73-77
    • Prochnik, S.E.1    Rokhsar, D.S.2    Aboobaker, A.A.3
  • 124
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of micro-RNAs in Arabidopsis thaliana
    • Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. 2006. A diverse and evolutionarily fluid set of micro-RNAs in Arabidopsis thaliana. Genes Dev. 20:3407-25
    • (2006) Genes Dev , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 125
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C.elegans
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, et al. 2006. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 127:1193-207
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5
  • 126
    • 38149071979 scopus 로고    scopus 로고
    • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    • Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC. 2007. Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res. 17:1850-64
    • (2007) Genome Res , vol.17 , pp. 1850-1864
    • Ruby, J.G.1    Stark, A.2    Johnston, W.K.3    Kellis, M.4    Bartel, D.P.5    Lai, E.C.6
  • 127
    • 79961170994 scopus 로고    scopus 로고
    • A ceRNA hypothesis: The Rosetta Stone of a hidden RNA language
    • Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. 2011. A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language? Cell 146:353-58
    • (2011) Cell , vol.146 , pp. 353-358
    • Salmena, L.1    Poliseno, L.2    Tay, Y.3    Kats, L.4    Pandolfi, P.P.5
  • 128
    • 84879174920 scopus 로고    scopus 로고
    • Deep sequencing the microRNA transcriptome in colorectal cancer
    • Schee K, Lorenz S, Worren MM, Gunther CC, Holden M, et al. 2013. Deep sequencing the microRNA transcriptome in colorectal cancer. PLOS ONE 8:e66165
    • (2013) PLOS ONE , vol.8 , pp. e66165
    • Schee, K.1    Lorenz, S.2    Worren, M.M.3    Gunther, C.C.4    Holden, M.5
  • 129
    • 84908572838 scopus 로고    scopus 로고
    • Gene regulation Structural basis for microRNA targeting
    • Schirle NT, Sheu-Gruttadauria J, MacRae IJ. 2014. Gene regulation. Structural basis for microRNA targeting. Science 346:608-13
    • (2014) Science , vol.346 , pp. 608-613
    • Schirle, N.T.1    Sheu-Gruttadauria, J.2    MacRae, I.J.3
  • 130
    • 84928754032 scopus 로고    scopus 로고
    • Gene expression MicroRNA control of protein expression noise
    • Schmiedel JM, Klemm SL, Zheng Y, Sahay A, Bluthgen N, et al. 2015. Gene expression. MicroRNA control of protein expression noise. Science 348:128-32
    • (2015) Science , vol.348 , pp. 128-132
    • Schmiedel, J.M.1    Klemm, S.L.2    Zheng, Y.3    Sahay, A.4    Bluthgen, N.5
  • 132
    • 33845608152 scopus 로고    scopus 로고
    • The phylogenetic distribution of metazoan microRNAs: Insights into evolutionary complexity and constraint
    • Sempere LF, Cole CN, McPeek MA, Peterson KJ. 2006. The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J. Exp. Zool. Mol. Dev. Evol. 306B:575-88
    • (2006) J. Exp. Zool. Mol. Dev. Evol , vol.306 B , pp. 575-588
    • Sempere, L.F.1    Cole, C.N.2    McPeek, M.A.3    Peterson, K.J.4
  • 133
    • 77955724367 scopus 로고    scopus 로고
    • Translational implications of microRNAs in clinical diagnostics and therapeutics
    • ed. RABradshaw,EADennis Oxford: Academic. 2nd ed
    • Sempere LF, Kauppinen S. 2009. Translational implications of microRNAs in clinical diagnostics and therapeutics. In Handbook of Cell Signaling, ed.RABradshaw,EADennis, pp. 2965-81. Oxford: Academic. 2nd ed
    • (2009) Handbook of Cell Signaling , pp. 2965-2981
    • Sempere, L.F.1    Kauppinen, S.2
  • 135
    • 84875692135 scopus 로고    scopus 로고
    • Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
    • Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, et al. 2013. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat. Genet. 45:415-21
    • (2013) Nat. Genet , vol.45 , pp. 415-421
    • Smith, J.J.1    Kuraku, S.2    Holt, C.3    Sauka-Spengler, T.4    Jiang, N.5
  • 136
    • 84901949738 scopus 로고    scopus 로고
    • MiR-34/449 miRNAs are required for motile ciliogenesis by repressing cp110
    • Song R, Walentek P, Sponer N, Klimke A, Lee JS, et al. 2014. miR-34/449 miRNAs are required for motile ciliogenesis by repressing cp110. Nature 510:115-20
    • (2014) Nature , vol.510 , pp. 115-120
    • Song, R.1    Walentek, P.2    Sponer, N.3    Klimke, A.4    Lee, J.S.5
  • 138
    • 39749110083 scopus 로고    scopus 로고
    • Small non-coding RNAs in animal development
    • Stefani G, Slack FJ. 2008. Small non-coding RNAs in animal development. Nat. Rev. Mol. Cell Biol. 9:219-30
    • (2008) Nat. Rev. Mol. Cell Biol , vol.9 , pp. 219-230
    • Stefani, G.1    Slack, F.J.2
  • 139
    • 84928761213 scopus 로고    scopus 로고
    • The landscape of long noncoding RNA classification
    • St. Laurent G, Wahlestedt C, Kapranov P. 2015. The landscape of long noncoding RNA classification. Trends Genet. 31:239-51
    • (2015) Trends Genet , vol.31 , pp. 239-251
    • St. Laurent, G.1    Wahlestedt, C.2    Kapranov, P.3
  • 140
    • 80054689794 scopus 로고    scopus 로고
    • An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma
    • Sumazin P, Yang X, Chiu H-S, Chung W-J, Iyer A, et al. 2011. An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell 147:370-81
    • (2011) Cell , vol.147 , pp. 370-381
    • Sumazin, P.1    Yang, X.2    Chiu, H.-S.3    Chung, W.-J.4    Iyer, A.5
  • 142
    • 33847698971 scopus 로고    scopus 로고
    • The relationship between non-protein-coding DNA and eukaryotic complexity
    • Taft RJ, Pheasant M, Mattick JS. 2007. The relationship between non-protein-coding DNA and eukaryotic complexity. BioEssays 29:288-99
    • (2007) BioEssays , vol.29 , pp. 288-299
    • Taft, R.J.1    Pheasant, M.2    Mattick, J.S.3
  • 145
    • 84922336562 scopus 로고    scopus 로고
    • Using artificial microRNA sponges to achieve microRNA loss-of-function in cancer cells
    • Tay FC, Lim JK, Zhu H, Hin LC, Wang S. 2015. Using artificial microRNA sponges to achieve microRNA loss-of-function in cancer cells. Adv. Drug Deliv. Rev. 81C:117-27
    • (2015) Adv. Drug Deliv. Rev , vol.81 C , pp. 117-127
    • Tay, F.C.1    Lim, J.K.2    Zhu, H.3    Hin, L.C.4    Wang, S.5
  • 147
    • 84907228240 scopus 로고    scopus 로고
    • A critical appraisal of the use of microRNA data in phylogenetics
    • Thomson RC, Plachetzki DC, Mahler DL, Moore BR. 2014. A critical appraisal of the use of microRNA data in phylogenetics. PNAS 111:E3659-68
    • (2014) PNAS , vol.111 , pp. E3659-E3668
    • Thomson, R.C.1    Plachetzki, D.C.2    Mahler, D.L.3    Moore, B.R.4
  • 148
    • 84921787026 scopus 로고    scopus 로고
    • MicroRNA in situ hybridization in tissue microarrays
    • Turnock-Jones JJ, Le Quesne JP. 2014. MicroRNA in situ hybridization in tissue microarrays. Methods Mol. Biol. 1211:85-93
    • (2014) Methods Mol. Biol , vol.1211 , pp. 85-93
    • Turnock-Jones, J.J.1    Le Quesne, J.P.2
  • 149
    • 16544365954 scopus 로고    scopus 로고
    • Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes
    • Valoczi A, Hornyik C, Varga N, Burgyan J, Kauppinen S, Havelda Z. 2004. Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes. Nucleic Acids Res. 32:e175
    • (2004) Nucleic Acids Res , vol.32 , pp. e175
    • Valoczi, A.1    Hornyik, C.2    Varga, N.3    Burgyan, J.4    Kauppinen, S.5    Havelda, Z.6
  • 150
    • 84922120593 scopus 로고    scopus 로고
    • MiRBase Tracker: Keeping track of microRNA annotation changes
    • Van Peer G, Lefever S, Anckaert J, Beckers A, Rihani A, et al. 2014. miRBase Tracker: keeping track of microRNA annotation changes. Database 2014:pii:bau080
    • (2014) Database , vol.2014 , pp. bau080
    • Van Peer, G.1    Lefever, S.2    Anckaert, J.3    Beckers, A.4    Rihani, A.5
  • 151
    • 84875458240 scopus 로고    scopus 로고
    • Base composition characteristics of mammalian miRNAs
    • Wang B. 2013. Base composition characteristics of mammalian miRNAs. J. Nucleic Acids 2013:951570
    • (2013) J. Nucleic Acids , vol.2013 , pp. 951570
    • Wang, B.1
  • 152
    • 84900814334 scopus 로고    scopus 로고
    • Composition of seed sequences is a major determinant of microRNA targeting patterns
    • Wang X. 2014. Composition of seed sequences is a major determinant of microRNA targeting patterns. Bioinformatics 30:1377-83
    • (2014) Bioinformatics , vol.30 , pp. 1377-1383
    • Wang, X.1
  • 153
    • 84871522891 scopus 로고    scopus 로고
    • Systematic curation of miRBase annotation using integrated small RNA highthroughput sequencing data for C.elegans and Drosophila
    • Wang X, Liu XS. 2011. Systematic curation of miRBase annotation using integrated small RNA highthroughput sequencing data for C. elegans and Drosophila. Front. Genet. 2:25
    • (2011) Front. Genet , vol.2 , pp. 25
    • Wang, X.1    Liu, X.S.2
  • 155
    • 79955788276 scopus 로고    scopus 로고
    • Naming "junk": Human non-protein coding RNA (ncRNA) gene nomenclature
    • Wright MW, Bruford EA. 2011. Naming "junk": human non-protein coding RNA (ncRNA) gene nomenclature. Hum. Genomics 5:90-98
    • (2011) Hum. Genomics , vol.5 , pp. 90-98
    • Wright, M.W.1    Bruford, E.A.2
  • 156
    • 77956995245 scopus 로고    scopus 로고
    • Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis
    • Yang JS, Maurin T, Robine N, Rasmussen KD, Jeffrey KL, et al. 2010. Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis. PNAS 107:15163-68
    • (2010) PNAS , vol.107 , pp. 15163-15168
    • Yang, J.S.1    Maurin, T.2    Robine, N.3    Rasmussen, K.D.4    Jeffrey, K.L.5
  • 157
    • 78649870594 scopus 로고    scopus 로고
    • The terminal loop region controls microRNA processing by Drosha and Dicer
    • Zhang X, Zeng Y. 2010. The terminal loop region controls microRNA processing by Drosha and Dicer. Nucleic Acids Res. 38:7689-97
    • (2010) Nucleic Acids Res , vol.38 , pp. 7689-7697
    • Zhang, X.1    Zeng, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.