-
1
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A et al. Landscape of transcription in human cells. Nature 2012; 489: 101-108.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
-
2
-
-
0015443431
-
The structure and function of chromatin
-
Comings DE. The structure and function of chromatin. Adv Hum Genet 1972; 3: 237-431.
-
(1972)
Adv Hum Genet
, vol.3
, pp. 237-431
-
-
Comings, D.E.1
-
3
-
-
33750370444
-
MicroRNA signatures in human cancers
-
Calin GA, Croce CM. MicroRNA signatures in human cancers. Nat Rev Cancer 2006; 6: 857-866.
-
(2006)
Nat Rev Cancer
, vol.6
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
4
-
-
84887101163
-
MicroRNAs and other non-coding RNAs as targets for anticancer drug development
-
Ling H, Fabbri M, Calin GA. MicroRNAs and other non-coding RNAs as targets for anticancer drug development. Nat Rev Drug Discov 2013; 12: 847-865.
-
(2013)
Nat Rev Drug Discov
, vol.12
, pp. 847-865
-
-
Ling, H.1
Fabbri, M.2
Calin, G.A.3
-
5
-
-
81355142141
-
Non-coding RNAs in human disease
-
Esteller M. Non-coding RNAs in human disease. Nat Rev Genet 2011; 12: 861-874.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 861-874
-
-
Esteller, M.1
-
6
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 2012; 22: 1775-1789.
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
-
7
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell 2011; 43: 904-914.
-
(2011)
Mol Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
8
-
-
77958576363
-
Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes
-
Schmitz KM, Mayer C, Postepska A, Grummt I. Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes. Gene Dev 2010; 24: 2264-2269.
-
(2010)
Gene Dev
, vol.24
, pp. 2264-2269
-
-
Schmitz, K.M.1
Mayer, C.2
Postepska, A.3
Grummt, I.4
-
9
-
-
80054756754
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
-
Chu C, Qu K, Zhong FL, Artandi SE, Chang HY. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol Cell 2011; 44: 667-678.
-
(2011)
Mol Cell
, vol.44
, pp. 667-678
-
-
Chu, C.1
Qu, K.2
Zhong, F.L.3
Artandi, S.E.4
Chang, H.Y.5
-
10
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS et al. Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci USA 2009; 106: 9362-9367.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
Collins, F.S.6
-
11
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 2011; 147: 1537-1550.
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
12
-
-
84890559595
-
Long non-coding RNAs: New players in cell differentiation and development
-
Fatica A, Bozzoni I. Long non-coding RNAs: new players in cell differentiation and development. Nat Rev Genet 2014; 15: 7-21.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 7-21
-
-
Fatica, A.1
Bozzoni, I.2
-
13
-
-
84875200257
-
Long noncoding RNAs: Cellular address codes in development and disease
-
Batista PJ, Chang HY. Long noncoding RNAs: cellular address codes in development and disease. Cell 2013; 152: 1298-1307.
-
(2013)
Cell
, vol.152
, pp. 1298-1307
-
-
Batista, P.J.1
Chang, H.Y.2
-
14
-
-
79957840356
-
Long noncoding RNAs and human disease
-
Wapinski O, Chang HY. Long noncoding RNAs and human disease. Trends Cell Biol 2011; 21: 354-361.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 354-361
-
-
Wapinski, O.1
Chang, H.Y.2
-
15
-
-
84875183056
-
Structure and function of long noncoding RNAs in epigenetic regulation
-
Mercer TR, Mattick JS. Structure and function of long noncoding RNAs in epigenetic regulation. Nat Struct Mol Biol 2013; 20: 300-307.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 300-307
-
-
Mercer, T.R.1
Mattick, J.S.2
-
16
-
-
84886252113
-
RNA in unexpected places: Long non-coding RNA functions in diverse cellular contexts
-
Geisler S, Coller J. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts. Nat Rev Mol Cell Biol 2013; 14: 699-712.
-
(2013)
Nat Rev Mol Cell Biol
, vol.14
, pp. 699-712
-
-
Geisler, S.1
Coller, J.2
-
17
-
-
84890860436
-
Long noncoding RNAs: Fresh perspectives into the RNA world
-
Yang L, Froberg JE, Lee JT. Long noncoding RNAs: fresh perspectives into the RNA world. Trends Biochem Sci 2014; 39: 35-43.
-
(2014)
Trends Biochem Sci
, vol.39
, pp. 35-43
-
-
Yang, L.1
Froberg, J.E.2
Lee, J.T.3
-
18
-
-
84897128298
-
The noncoding RNA revolution-trashing old rules to forge new ones
-
Cech TR, Steitz JA. The noncoding RNA revolution-trashing old rules to forge new ones. Cell 2014; 157: 77-94.
-
(2014)
Cell
, vol.157
, pp. 77-94
-
-
Cech, T.R.1
Steitz, J.A.2
-
19
-
-
84879987789
-
LincRNAs: Genomics, evolution, and mechanisms
-
Ulitsky I, Bartel DP. lincRNAs: genomics, evolution, and mechanisms. Cell 2013; 154: 26-46.
-
(2013)
Cell
, vol.154
, pp. 26-46
-
-
Ulitsky, I.1
Bartel, D.P.2
-
20
-
-
84875177348
-
X-inactivation, imprinting, and long noncoding RNAs in health and disease
-
Lee JT, Bartolomei MS. X-inactivation, imprinting, and long noncoding RNAs in health and disease. Cell 2013; 152: 1308-1323.
-
(2013)
Cell
, vol.152
, pp. 1308-1323
-
-
Lee, J.T.1
Bartolomei, M.S.2
-
21
-
-
84873279841
-
GWAS meets TCGA to illuminate mechanisms of cancer predisposition
-
Kim HS, Minna JD, White MA. GWAS meets TCGA to illuminate mechanisms of cancer predisposition. Cell 2013; 152: 387-389.
-
(2013)
Cell
, vol.152
, pp. 387-389
-
-
Kim, H.S.1
Minna, J.D.2
White, M.A.3
-
22
-
-
18744396337
-
Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia
-
Calin GA, Dumitru CD, Shimizu M, Bichi R, Zupo S, Noch E et al. Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proc Natl Acad Sci USA 2002; 99: 15524-15529.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15524-15529
-
-
Calin, G.A.1
Dumitru, C.D.2
Shimizu, M.3
Bichi, R.4
Zupo, S.5
Noch, E.6
-
23
-
-
79951495822
-
LncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements
-
Gong C, Maquat LE. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. Nature 2011; 470: 284-288.
-
(2011)
Nature
, vol.470
, pp. 284-288
-
-
Gong, C.1
Maquat, L.E.2
-
24
-
-
39549103642
-
Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
-
Mariner PD, Walters RD, Espinoza CA, Drullinger LF, Wagner SD, Kugel JF et al. Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol Cell 2008; 29: 499-509.
-
(2008)
Mol Cell
, vol.29
, pp. 499-509
-
-
Mariner, P.D.1
Walters, R.D.2
Espinoza, C.A.3
Drullinger, L.F.4
Wagner, S.D.5
Kugel, J.F.6
-
25
-
-
0037819447
-
Transcription regulation and animal diversity
-
Levine M, Tjian R. Transcription regulation and animal diversity. Nature 2003; 424: 147-151.
-
(2003)
Nature
, vol.424
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
26
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 2008; 322: 1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
27
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA et al. Divergent transcription from active promoters. Science 2008; 322: 1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
-
28
-
-
79959756263
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
-
Hung T, Wang Y, Lin MF, Koegel AK, Kotake Y, Grant GD et al. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet 2011; 43: 621-629.
-
(2011)
Nat Genet
, vol.43
, pp. 621-629
-
-
Hung, T.1
Wang, Y.2
Lin, M.F.3
Koegel, A.K.4
Kotake, Y.5
Grant, G.D.6
-
29
-
-
0032479079
-
Going the distance: A current view of enhancer action
-
Blackwood EM, Kadonaga JT. Going the distance: a current view of enhancer action. Science 1998; 281: 60-63.
-
(1998)
Science
, vol.281
, pp. 60-63
-
-
Blackwood, E.M.1
Kadonaga, J.T.2
-
30
-
-
84884220048
-
Long noncoding RNAs usher in a new era in the biology of enhancers
-
Orom UA, Shiekhattar R. Long noncoding RNAs usher in a new era in the biology of enhancers. Cell 2013; 154: 1190-1193.
-
(2013)
Cell
, vol.154
, pp. 1190-1193
-
-
Orom, U.A.1
Shiekhattar, R.2
-
31
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 2010; 465: 182-187.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
-
32
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G et al. Long noncoding RNAs with enhancer-like function in human cells. Cell 2010; 143: 46-58.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Orom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
-
33
-
-
79961022267
-
Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
-
Koch F, Fenouil R, Gut M, Cauchy P, Albert TK, Zacarias-Cabeza J et al. Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters. Nat Struct Mol Biol 2011; 18: 956-963.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 956-963
-
-
Koch, F.1
Fenouil, R.2
Gut, M.3
Cauchy, P.4
Albert, T.K.5
Zacarias-Cabeza, J.6
-
34
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
Feng J, Bi C, Clark BS, Mady R, Shah P, Kohtz JD. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Gene Dev 2006; 20: 1470-1484.
-
(2006)
Gene Dev
, vol.20
, pp. 1470-1484
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
Kohtz, J.D.6
-
35
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, Chen Y et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 2011; 472: 120-124.
-
(2011)
Nature
, vol.472
, pp. 120-124
-
-
Wang, K.C.1
Yang, Y.W.2
Liu, B.3
Sanyal, A.4
Corces-Zimmerman, R.5
Chen, Y.6
-
36
-
-
84883132550
-
LncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs
-
Yang L, Lin C, Jin C, Yang JC, Tanasa B, Li W et al. lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs. Nature 2013; 500: 598-602.
-
(2013)
Nature
, vol.500
, pp. 598-602
-
-
Yang, L.1
Lin, C.2
Jin, C.3
Yang, J.C.4
Tanasa, B.5
Li, W.6
-
37
-
-
2542542256
-
Ultraconserved elements in the human genome
-
Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS et al. Ultraconserved elements in the human genome. Science 2004; 304: 1321-1325.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
Stephen, S.4
Kent, W.J.5
Mattick, J.S.6
-
38
-
-
34548230885
-
Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
-
Calin GA, Liu CG, Ferracin M, Hyslop T, Spizzo R, Sevignani C et al. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell 2007; 12: 215-229.
-
(2007)
Cancer Cell
, vol.12
, pp. 215-229
-
-
Calin, G.A.1
Liu, C.G.2
Ferracin, M.3
Hyslop, T.4
Spizzo, R.5
Sevignani, C.6
-
39
-
-
79551674253
-
Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma
-
Braconi C, Valeri N, Kogure T, Gasparini P, Huang N, Nuovo GJ et al. Expression and functional role of a transcribed noncoding RNA with an ultraconserved element in hepatocellular carcinoma. Proc Natl Acad Sci USA 2011; 108: 786-791.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 786-791
-
-
Braconi, C.1
Valeri, N.2
Kogure, T.3
Gasparini, P.4
Huang, N.5
Nuovo, G.J.6
-
40
-
-
84887620047
-
HINCUTs in cancer: Hypoxia-induced noncoding ultraconserved transcripts
-
Ferdin J, Nishida N, Wu X, Nicoloso MS, Shah MY, Devlin C et al. HINCUTs in cancer: hypoxia-induced noncoding ultraconserved transcripts. Cell Death Differ 2013; 20: 1675-1687.
-
(2013)
Cell Death Differ
, vol.20
, pp. 1675-1687
-
-
Ferdin, J.1
Nishida, N.2
Wu, X.3
Nicoloso, M.S.4
Shah, M.Y.5
Devlin, C.6
-
41
-
-
84883736533
-
CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer
-
Ling H, Spizzo R, Atlasi Y, Nicoloso M, Shimizu M, Redis RS et al. CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer. Genome Res 2013; 23: 1446-1461.
-
(2013)
Genome Res
, vol.23
, pp. 1446-1461
-
-
Ling, H.1
Spizzo, R.2
Atlasi, Y.3
Nicoloso, M.4
Shimizu, M.5
Redis, R.S.6
-
42
-
-
84903736048
-
Regulation of pri-miRNA processing by a long noncoding RNA transcribed from an ultraconserved region
-
Liz J, Portela A, Soler M, Gomez A, Ling H, Michlewski G et al. Regulation of pri-miRNA processing by a long noncoding RNA transcribed from an ultraconserved region. Mol Cell 2014; 55: 138-147.
-
(2014)
Mol Cell
, vol.55
, pp. 138-147
-
-
Liz, J.1
Portela, A.2
Soler, M.3
Gomez, A.4
Ling, H.5
Michlewski, G.6
-
43
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M et al. Antisense transcription in the mammalian transcriptome. Science 2005; 309: 1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
-
44
-
-
24644448635
-
Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana
-
Wang XJ, Gaasterland T, Chua NH. Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biol 2005; 6: R30.
-
(2005)
Genome Biol
, vol.6
, pp. R30
-
-
Wang, X.J.1
Gaasterland, T.2
Chua, N.H.3
-
45
-
-
69249217649
-
Regulatory roles of natural antisense transcripts
-
Faghihi MA, Wahlestedt C. Regulatory roles of natural antisense transcripts. Nat Rev Mol Cell Biol 2009; 10: 637-643.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 637-643
-
-
Faghihi, M.A.1
Wahlestedt, C.2
-
46
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu W, Gius D, Onyango P, Muldoon-Jacobs K, Karp J, Feinberg AP et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature 2008; 451: 202-206.
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
-
47
-
-
34248547495
-
Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanomaneural system tumor family: Identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF
-
Pasmant E, Laurendeau I, Heron D, Vidaud M, Vidaud D, Bieche I. Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanomaneural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF. Cancer Res 2007; 67: 3963-3969.
-
(2007)
Cancer Res
, vol.67
, pp. 3963-3969
-
-
Pasmant, E.1
Laurendeau, I.2
Heron, D.3
Vidaud, M.4
Vidaud, D.5
Bieche, I.6
-
48
-
-
77953096072
-
Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a
-
Yap KL, Li S, Munoz-Cabello AM, Raguz S, Zeng L, Mujtaba S et al. Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. Mol Cell 2010; 38: 662-674.
-
(2010)
Mol Cell
, vol.38
, pp. 662-674
-
-
Yap, K.L.1
Li, S.2
Munoz-Cabello, A.M.3
Raguz, S.4
Zeng, L.5
Mujtaba, S.6
-
49
-
-
41149112564
-
A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelialmesenchymal transition
-
Beltran M, Puig I, Pena C, Garcia JM, Alvarez AB, Pena R et al. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelialmesenchymal transition. Gene Dev 2008; 22: 756-769.
-
(2008)
Gene Dev
, vol.22
, pp. 756-769
-
-
Beltran, M.1
Puig, I.2
Pena, C.3
Garcia, J.M.4
Alvarez, A.B.5
Pena, R.6
-
50
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007; 129: 1311-1323.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
-
51
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010; 329: 689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
-
52
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M, Guttman M, Feldser D, Garber M, Koziol MJ, Kenzelmann-Broz D et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010; 142: 409-419.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
-
53
-
-
69249235745
-
Lessons from X-chromosome inactivation: Long ncRNA as guides and tethers to the epigenome
-
Lee JT. Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. Gene Dev 2009; 23: 1831-1842.
-
(2009)
Gene Dev
, vol.23
, pp. 1831-1842
-
-
Lee, J.T.1
-
54
-
-
80052972698
-
The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin
-
Bertani S, Sauer S, Bolotin E, Sauer F. The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin. Mol Cell 2011; 43: 1040-1046.
-
(2011)
Mol Cell
, vol.43
, pp. 1040-1046
-
-
Bertani, S.1
Sauer, S.2
Bolotin, E.3
Sauer, F.4
-
55
-
-
84888057006
-
DNMT1-interacting RNAs block gene-specific DNA methylation
-
Di Ruscio A, Ebralidze AK, Benoukraf T, Amabile G, Goff LA, Terragni J et al. DNMT1-interacting RNAs block gene-specific DNA methylation. Nature 2013; 503: 371-376.
-
(2013)
Nature
, vol.503
, pp. 371-376
-
-
Di Ruscio, A.1
Ebralidze, A.K.2
Benoukraf, T.3
Amabile, G.4
Goff, L.A.5
Terragni, J.6
-
56
-
-
79959948197
-
YY1 tethers Xist RNA to the inactive X nucleation center
-
Jeon Y, Lee JT. YY1 tethers Xist RNA to the inactive X nucleation center. Cell 2011; 146: 119-133.
-
(2011)
Cell
, vol.146
, pp. 119-133
-
-
Jeon, Y.1
Lee, J.T.2
-
57
-
-
84890549512
-
High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation
-
Simon MD, Pinter SF, Fang R, Sarma K, Rutenberg-Schoenberg M, Bowman SK et al. High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation. Nature 2013; 504: 465-469.
-
(2013)
Nature
, vol.504
, pp. 465-469
-
-
Simon, M.D.1
Pinter, S.F.2
Fang, R.3
Sarma, K.4
Rutenberg-Schoenberg, M.5
Bowman, S.K.6
-
58
-
-
75749124997
-
2-D structure of the A region of Xist RNA and its implication for PRC2 association
-
Maenner S, Blaud M, Fouillen L, Savoye A, Marchand V, Dubois A et al. 2-D structure of the A region of Xist RNA and its implication for PRC2 association. PLoS Biol 2010; 8: e1000276.
-
(2010)
PLoS Biol
, vol.8
, pp. e1000276
-
-
Maenner, S.1
Blaud, M.2
Fouillen, L.3
Savoye, A.4
Marchand, V.5
Dubois, A.6
-
59
-
-
56549111129
-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T, Mitchell JA, Sanz LA, Pauler FM, Ferguson-Smith AC, Feil R et al. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 2008; 322: 1717-1720.
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
Pauler, F.M.4
Ferguson-Smith, A.C.5
Feil, R.6
-
60
-
-
0032932528
-
Tsix, a gene antisense to Xist at the X-inactivation centre
-
Lee JT, Davidow LS, Warshawsky D. Tsix, a gene antisense to Xist at the X-inactivation centre. Nat Genet 1999; 21: 400-404.
-
(1999)
Nat Genet
, vol.21
, pp. 400-404
-
-
Lee, J.T.1
Davidow, L.S.2
Warshawsky, D.3
-
61
-
-
33344461310
-
A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization
-
Sun BK, Deaton AM, Lee JT. A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization. Mol Cell 2006; 21: 617-628.
-
(2006)
Mol Cell
, vol.21
, pp. 617-628
-
-
Sun, B.K.1
Deaton, A.M.2
Lee, J.T.3
-
62
-
-
45549098196
-
Intersection of the RNA interference and X-inactivation pathways
-
Ogawa Y, Sun BK, Lee JT. Intersection of the RNA interference and X-inactivation pathways. Science 2008; 320: 1336-1341.
-
(2008)
Science
, vol.320
, pp. 1336-1341
-
-
Ogawa, Y.1
Sun, B.K.2
Lee, J.T.3
-
63
-
-
84874368349
-
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
-
Lai F, Orom UA, Cesaroni M, Beringer M, Taatjes DJ, Blobel GA et al. Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 2013; 494: 497-501.
-
(2013)
Nature
, vol.494
, pp. 497-501
-
-
Lai, F.1
Orom, U.A.2
Cesaroni, M.3
Beringer, M.4
Taatjes, D.J.5
Blobel, G.A.6
-
64
-
-
84873456575
-
ERNAs are required for p53-dependent enhancer activity and gene transcription
-
Melo CA, Drost J, Wijchers PJ, van de Werken H, de Wit E, Oude Vrielink JA et al. eRNAs are required for p53-dependent enhancer activity and gene transcription. Mol Cell 2013; 49: 524-535.
-
(2013)
Mol Cell
, vol.49
, pp. 524-535
-
-
Melo, C.A.1
Drost, J.2
Wijchers, P.J.3
Van De Werken, H.4
De Wit, E.5
Oude Vrielink, J.A.6
-
65
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci USA 2009; 106: 11667-11672.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
-
66
-
-
61849139645
-
Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts
-
Sanford JR, Wang X, Mort M, Vanduyn N, Cooper DN, Mooney SD et al. Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. Genome Res 2009; 19: 381-394.
-
(2009)
Genome Res
, vol.19
, pp. 381-394
-
-
Sanford, J.R.1
Wang, X.2
Mort, M.3
Vanduyn, N.4
Cooper, D.N.5
Mooney, S.D.6
-
67
-
-
77149157495
-
Maternally expressed gene 3 (MEG3) noncoding ribonucleic acid: Isoform structure, expression, and functions
-
Zhang X, Rice K, Wang Y, Chen W, Zhong Y, Nakayama Y et al. Maternally expressed gene 3 (MEG3) noncoding ribonucleic acid: isoform structure, expression, and functions. Endocrinology 2010; 151: 939-947.
-
(2010)
Endocrinology
, vol.151
, pp. 939-947
-
-
Zhang, X.1
Rice, K.2
Wang, Y.3
Chen, W.4
Zhong, Y.5
Nakayama, Y.6
-
68
-
-
84862195751
-
Structural architecture of the human long non-coding RNA, steroid receptor RNA activator
-
Novikova IV, Hennelly SP, Sanbonmatsu KY. Structural architecture of the human long non-coding RNA, steroid receptor RNA activator. Nucleic Acids Res 2012; 40: 5034-5051.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5034-5051
-
-
Novikova, I.V.1
Hennelly, S.P.2
Sanbonmatsu, K.Y.3
-
69
-
-
0242668706
-
Role of histone H3 lysine 27 methylation in X inactivation
-
Plath K, Fang J, Mlynarczyk-Evans SK, Cao R, Worringer KA, Wang H et al. Role of histone H3 lysine 27 methylation in X inactivation. Science 2003; 300: 131-135.
-
(2003)
Science
, vol.300
, pp. 131-135
-
-
Plath, K.1
Fang, J.2
Mlynarczyk-Evans, S.K.3
Cao, R.4
Worringer, K.A.5
Wang, H.6
-
70
-
-
4344579113
-
The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock
-
Allen TA, Von Kaenel S, Goodrich JA, Kugel JF. The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock. Nat Struct Mol Biol 2004; 11: 816-821.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 816-821
-
-
Allen, T.A.1
Von Kaenel, S.2
Goodrich, J.A.3
Kugel, J.F.4
-
71
-
-
65249158053
-
B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes
-
Yakovchuk P, Goodrich JA, Kugel JF. B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes. Proc Natl Acad Sci USA 2009; 106: 5569-5574.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5569-5574
-
-
Yakovchuk, P.1
Goodrich, J.A.2
Kugel, J.F.3
-
72
-
-
84901608759
-
LincSNP: A database of linking disease-associated SNPs to human large intergenic non-coding RNAs
-
Ning S, Zhao Z, Ye J, Wang P, Zhi H, Li R et al. LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs. BMC Bioinformatics 2014; 15: 152.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 152
-
-
Ning, S.1
Zhao, Z.2
Ye, J.3
Wang, P.4
Zhi, H.5
Li, R.6
-
73
-
-
79551623370
-
ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS
-
Pasmant E, Sabbagh A, Vidaud M, Bieche I. ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS. FASEB J 2011; 25: 444-448.
-
(2011)
FASEB J
, vol.25
, pp. 444-448
-
-
Pasmant, E.1
Sabbagh, A.2
Vidaud, M.3
Bieche, I.4
-
74
-
-
81855183779
-
Role of noncoding RNA ANRIL in genesis of plexiform neurofibromas in neurofibromatosis type 1
-
Pasmant E, Sabbagh A, Masliah-Planchon J, Ortonne N, Laurendeau I, Melin L et al. Role of noncoding RNA ANRIL in genesis of plexiform neurofibromas in neurofibromatosis type 1. J Natil Cancer Inst 2011; 103: 1713-1722.
-
(2011)
J Natil Cancer Inst
, vol.103
, pp. 1713-1722
-
-
Pasmant, E.1
Sabbagh, A.2
Masliah-Planchon, J.3
Ortonne, N.4
Laurendeau, I.5
Melin, L.6
-
75
-
-
37149033830
-
The H19 non-coding RNA is essential for human tumor growth
-
Matouk IJ, DeGroot N, Mezan S, Ayesh S, Abu-lail R, Hochberg A et al. The H19 non-coding RNA is essential for human tumor growth. PloS one 2007; 2: e845.
-
(2007)
PloS One
, vol.2
, pp. e845
-
-
Matouk, I.J.1
DeGroot, N.2
Mezan, S.3
Ayesh, S.4
Abu-Lail, R.5
Hochberg, A.6
-
76
-
-
84874789694
-
Epigenetic activation of the MiR-200 family contributes to H19-mediated metastasis suppression in hepatocellular carcinoma
-
Zhang L, Yang F, Yuan JH, Yuan SX, Zhou WP, Huo XS et al. Epigenetic activation of the MiR-200 family contributes to H19-mediated metastasis suppression in hepatocellular carcinoma. Carcinogenesis 2013; 34: 577-586.
-
(2013)
Carcinogenesis
, vol.34
, pp. 577-586
-
-
Zhang, L.1
Yang, F.2
Yuan, J.H.3
Yuan, S.X.4
Zhou, W.P.5
Huo, X.S.6
-
77
-
-
55649105852
-
Polymorphisms in the H19 gene and the risk of bladder cancer
-
Verhaegh GW, Verkleij L, Vermeulen SH, den Heijer M, Witjes JA, Kiemeney LA. Polymorphisms in the H19 gene and the risk of bladder cancer. Eur Urol 2008; 54: 1118-1126.
-
(2008)
Eur Urol
, vol.54
, pp. 1118-1126
-
-
Verhaegh, G.W.1
Verkleij, L.2
Vermeulen, S.H.3
Den Heijer, M.4
Witjes, J.A.5
Kiemeney, L.A.6
-
78
-
-
34250006413
-
Genome-wide association study identifies novel breast cancer susceptibility loci
-
Easton DF, Pooley KA, Dunning AM, Pharoah PD, Thompson D, Ballinger DG et al. Genome-wide association study identifies novel breast cancer susceptibility loci. Nature 2007; 447: 1087-1093.
-
(2007)
Nature
, vol.447
, pp. 1087-1093
-
-
Easton, D.F.1
Pooley, K.A.2
Dunning, A.M.3
Pharoah, P.D.4
Thompson, D.5
Ballinger, D.G.6
-
79
-
-
84859485253
-
A genetic variant in long non-coding RNA HULC contributes to risk of HBV-related hepatocellular carcinoma in a Chinese population
-
Liu Y, Pan S, Liu L, Zhai X, Liu J, Wen J et al. A genetic variant in long non-coding RNA HULC contributes to risk of HBV-related hepatocellular carcinoma in a Chinese population. PloS one 2012; 7: e35145.
-
(2012)
PloS One
, vol.7
, pp. e35145
-
-
Liu, Y.1
Pan, S.2
Liu, L.3
Zhai, X.4
Liu, J.5
Wen, J.6
-
80
-
-
0026495364
-
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors
-
Kallioniemi A, Kallioniemi OP, Sudar D, Rutovitz D, Gray JW, Waldman F et al. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 1992; 258: 818-821.
-
(1992)
Science
, vol.258
, pp. 818-821
-
-
Kallioniemi, A.1
Kallioniemi, O.P.2
Sudar, D.3
Rutovitz, D.4
Gray, J.W.5
Waldman, F.6
-
81
-
-
77249119762
-
The landscape of somatic copy-number alteration across human cancers
-
Beroukhim R, Mermel CH, Porter D, Wei G, Raychaudhuri S, Donovan J et al. The landscape of somatic copy-number alteration across human cancers. Nature 2010; 463: 899-905.
-
(2010)
Nature
, vol.463
, pp. 899-905
-
-
Beroukhim, R.1
Mermel, C.H.2
Porter, D.3
Wei, G.4
Raychaudhuri, S.5
Donovan, J.6
-
82
-
-
84880870139
-
Lessons from functional analysis of genome-wide association studies
-
Sur I, Tuupanen S, Whitington T, Aaltonen LA, Taipale J. Lessons from functional analysis of genome-wide association studies. Cancer Res 2013; 73: 4180-4184.
-
(2013)
Cancer Res
, vol.73
, pp. 4180-4184
-
-
Sur, I.1
Tuupanen, S.2
Whitington, T.3
Aaltonen, L.A.4
Taipale, J.5
-
83
-
-
84870706616
-
The 8q24 gene desert: An oasis of noncoding transcriptional activity
-
Huppi K, Pitt JJ, Wahlberg BM, Caplen NJ. The 8q24 gene desert: an oasis of noncoding transcriptional activity. Front Genet 2012; 3: 69.
-
(2012)
Front Genet
, vol.3
, pp. 69
-
-
Huppi, K.1
Pitt, J.J.2
Wahlberg, B.M.3
Caplen, N.J.4
-
84
-
-
70249128376
-
Functional enhancers at the gene-poor 8q24 cancer-linked locus
-
Jia L, Landan G, Pomerantz M, Jaschek R, Herman P, Reich D et al. Functional enhancers at the gene-poor 8q24 cancer-linked locus. PLoS Genet 2009; 5: e1000597.
-
(2009)
PLoS Genet
, vol.5
, pp. e1000597
-
-
Jia, L.1
Landan, G.2
Pomerantz, M.3
Jaschek, R.4
Herman, P.5
Reich, D.6
-
85
-
-
84899939074
-
Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus
-
Xiang JF, Yin QF, Chen T, Zhang Y, Zhang XO, Wu Z et al. Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus. Cell Res 2014; 24: 513-531.
-
(2014)
Cell Res
, vol.24
, pp. 513-531
-
-
Xiang, J.F.1
Yin, Q.F.2
Chen, T.3
Zhang, Y.4
Zhang, X.O.5
Wu, Z.6
-
86
-
-
84896508973
-
Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5
-
Kim T, Cui R, Jeon YJ, Lee JH, Lee JH, Sim H et al. Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5. Proc Natl Acad Sci USA 2014; 111: 4173-4178.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, pp. 4173-4178
-
-
Kim, T.1
Cui, R.2
Jeon, Y.J.3
Lee, J.H.4
Lee, J.H.5
Sim, H.6
-
87
-
-
84905578200
-
PVT1 dependence in cancer with MYC copy-number increase
-
Tseng YY, Moriarity BS, Gong W, Akiyama R, Tiwari A, Kawakami H et al. PVT1 dependence in cancer with MYC copy-number increase. Nature 2014; 512: 82-86.
-
(2014)
Nature
, vol.512
, pp. 82-86
-
-
Tseng, Y.Y.1
Moriarity, B.S.2
Gong, W.3
Akiyama, R.4
Tiwari, A.5
Kawakami, H.6
-
88
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner JR, Iyer MK, Balbin OA, Dhanasekaran SM, Cao Q, Brenner JC et al. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol 2011; 29: 742-749.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 742-749
-
-
Prensner, J.R.1
Iyer, M.K.2
Balbin, O.A.3
Dhanasekaran, S.M.4
Cao, Q.5
Brenner, J.C.6
-
89
-
-
84890000516
-
Association between polymorphisms in long non-coding RNA PRNCR1 in 8q24 and risk of colorectal cancer
-
Li L, Sun R, Liang Y, Pan X, Li Z, Bai P et al. Association between polymorphisms in long non-coding RNA PRNCR1 in 8q24 and risk of colorectal cancer. J Exp Clin Cancer Res 2013; 32: 104.
-
(2013)
J Exp Clin Cancer Res
, vol.32
, pp. 104
-
-
Li, L.1
Sun, R.2
Liang, Y.3
Pan, X.4
Li, Z.5
Bai, P.6
-
90
-
-
78449242326
-
Common genetic variants and modification of penetrance of BRCA2-associated breast cancer
-
Gaudet MM, Kirchhoff T, Green T, Vijai J, Korn JM, Guiducci C et al. Common genetic variants and modification of penetrance of BRCA2-associated breast cancer. PLoS Genet 2010; 6: e1001183.
-
(2010)
PLoS Genet
, vol.6
, pp. e1001183
-
-
Gaudet, M.M.1
Kirchhoff, T.2
Green, T.3
Vijai, J.4
Korn, J.M.5
Guiducci, C.6
-
91
-
-
39749129053
-
Multiple newly identified loci associated with prostate cancer susceptibility
-
Eeles RA, Kote-Jarai Z, Giles GG, Olama AA, Guy M, Jugurnauth SK et al. Multiple newly identified loci associated with prostate cancer susceptibility. Nat Genet 2008; 40: 316-321.
-
(2008)
Nat Genet
, vol.40
, pp. 316-321
-
-
Eeles, R.A.1
Kote-Jarai, Z.2
Giles, G.G.3
Olama, A.A.4
Guy, M.5
Jugurnauth, S.K.6
-
92
-
-
78650200618
-
Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility
-
Chung S, Nakagawa H, Uemura M, Piao L, Ashikawa K, Hosono N et al. Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility. Cancer Sci 2011; 102: 245-252.
-
(2011)
Cancer Sci
, vol.102
, pp. 245-252
-
-
Chung, S.1
Nakagawa, H.2
Uemura, M.3
Piao, L.4
Ashikawa, K.5
Hosono, N.6
-
93
-
-
68149170044
-
The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling
-
Tuupanen S, Turunen M, Lehtonen R, Hallikas O, Vanharanta S, Kivioja T et al. The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling. Nat Genet 2009; 41: 885-890.
-
(2009)
Nat Genet
, vol.41
, pp. 885-890
-
-
Tuupanen, S.1
Turunen, M.2
Lehtonen, R.3
Hallikas, O.4
Vanharanta, S.5
Kivioja, T.6
-
94
-
-
68149180901
-
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer
-
Pomerantz MM, Ahmadiyeh N, Jia L, Herman P, Verzi MP, Doddapaneni H et al. The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer. Nat Genet 2009; 41: 882-884.
-
(2009)
Nat Genet
, vol.41
, pp. 882-884
-
-
Pomerantz, M.M.1
Ahmadiyeh, N.2
Jia, L.3
Herman, P.4
Verzi, M.P.5
Doddapaneni, H.6
-
95
-
-
46849098205
-
Multiple loci with different cancer specificities within the 8q24 gene desert
-
Ghoussaini M, Song H, Koessler T, Al Olama AA, Kote-Jarai Z, Driver KE et al. Multiple loci with different cancer specificities within the 8q24 gene desert. J Natl Cancer Inst 2008; 100: 962-966.
-
(2008)
J Natl Cancer Inst
, vol.100
, pp. 962-966
-
-
Ghoussaini, M.1
Song, H.2
Koessler, T.3
Al Olama, A.A.4
Kote-Jarai, Z.5
Driver, K.E.6
-
96
-
-
84861562215
-
8q24 Cancer risk allele associated with major metastatic risk in inflammatory breast cancer
-
Bertucci F, Lagarde A, Ferrari A, Finetti P, Charafe-Jauffret E, Van Laere S et al. 8q24 Cancer risk allele associated with major metastatic risk in inflammatory breast cancer. PloS one 2012; 7: e37943.
-
(2012)
PloS One
, vol.7
, pp. e37943
-
-
Bertucci, F.1
Lagarde, A.2
Ferrari, A.3
Finetti, P.4
Charafe-Jauffret, E.5
Van Laere, S.6
-
97
-
-
84870674626
-
Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors
-
Sur IK, Hallikas O, Vaharautio A, Yan J, Turunen M, Enge M et al. Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors. Science 2012; 338: 1360-1363.
-
(2012)
Science
, vol.338
, pp. 1360-1363
-
-
Sur, I.K.1
Hallikas, O.2
Vaharautio, A.3
Yan, J.4
Turunen, M.5
Enge, M.6
-
98
-
-
84863922124
-
Comprehensive molecular characterization of human colon and rectal cancer
-
Cancer Genome Atlas N
-
Cancer Genome Atlas N, Comprehensive molecular characterization of human colon and rectal cancer. Nature 2012; 487: 330-337.
-
(2012)
Nature
, vol.487
, pp. 330-337
-
-
-
99
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
Hnisz D, Abraham BJ, Lee TI, Lau A, Saint-Andre V, Sigova AA et al. Super-enhancers in the control of cell identity and disease. Cell 2013; 155: 934-947.
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-Andre, V.5
Sigova, A.A.6
-
100
-
-
84873489136
-
Human disease-associated genetic variation impacts large intergenic noncoding RNA expression
-
Kumar V, Westra HJ, Karjalainen J, Zhernakova DV, Esko T, Hrdlickova B et al. Human disease-associated genetic variation impacts large intergenic noncoding RNA expression. PLoS Genet 2013; 9: e1003201.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003201
-
-
Kumar, V.1
Westra, H.J.2
Karjalainen, J.3
Zhernakova, D.V.4
Esko, T.5
Hrdlickova, B.6
-
101
-
-
84896524997
-
PCAT-1, a long noncoding RNA, regulates BRCA2 and controls homologous recombination in cancer
-
Prensner JR, Chen W, Iyer MK, Cao Q, Ma T, Han S et al. PCAT-1, a long noncoding RNA, regulates BRCA2 and controls homologous recombination in cancer. Cancer Res 2014; 74: 1651-1660.
-
(2014)
Cancer Res
, vol.74
, pp. 1651-1660
-
-
Prensner, J.R.1
Chen, W.2
Iyer, M.K.3
Cao, Q.4
Ma, T.5
Han, S.6
-
102
-
-
77951118936
-
Long noncoding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ et al. Long noncoding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010; 464: 1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
-
103
-
-
84863495094
-
The hallmarks of cancer: A long non-coding RNA point of view
-
Gutschner T, Diederichs S. The hallmarks of cancer: a long non-coding RNA point of view. RNA Biol 2012; 9: 703-719.
-
(2012)
RNA Biol
, vol.9
, pp. 703-719
-
-
Gutschner, T.1
Diederichs, S.2
-
104
-
-
84874053510
-
Xist RNA is a potent suppressor of hematologic cancer in mice
-
Yildirim E, Kirby JE, Brown DE, Mercier FE, Sadreyev RI, Scadden DT et al. Xist RNA is a potent suppressor of hematologic cancer in mice. Cell 2013; 152: 727-742.
-
(2013)
Cell
, vol.152
, pp. 727-742
-
-
Yildirim, E.1
Kirby, J.E.2
Brown, D.E.3
Mercier, F.E.4
Sadreyev, R.I.5
Scadden, D.T.6
-
105
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
-
Ji P, Diederichs S, Wang W, Boing S, Metzger R, Schneider PM et al. MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 2003; 22: 8031-8041.
-
(2003)
Oncogene
, vol.22
, pp. 8031-8041
-
-
Ji, P.1
Diederichs, S.2
Wang, W.3
Boing, S.4
Metzger, R.5
Schneider, P.M.6
-
106
-
-
79955836034
-
Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation
-
Yang Z, Zhou L, Wu LM, Lai MC, Xie HY, Zhang F et al. Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation. Ann Surgical Oncol 2011; 18: 1243-1250.
-
(2011)
Ann Surgical Oncol
, vol.18
, pp. 1243-1250
-
-
Yang, Z.1
Zhou, L.2
Wu, L.M.3
Lai, M.C.4
Xie, H.Y.5
Zhang, F.6
-
107
-
-
80054029971
-
Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers
-
Kogo R, Shimamura T, Mimori K, Kawahara K, Imoto S, Sudo T et al. Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers. Cancer Res 2011; 71: 6320-6326.
-
(2011)
Cancer Res
, vol.71
, pp. 6320-6326
-
-
Kogo, R.1
Shimamura, T.2
Mimori, K.3
Kawahara, K.4
Imoto, S.5
Sudo, T.6
-
108
-
-
84863393119
-
Upregulation of miR-196a and HOTAIR drive malignant character in gastrointestinal stromal tumors
-
Niinuma T, Suzuki H, Nojima M, Nosho K, Yamamoto H, Takamaru H et al. Upregulation of miR-196a and HOTAIR drive malignant character in gastrointestinal stromal tumors. Cancer Res 2012; 72: 1126-1136.
-
(2012)
Cancer Res
, vol.72
, pp. 1126-1136
-
-
Niinuma, T.1
Suzuki, H.2
Nojima, M.3
Nosho, K.4
Yamamoto, H.5
Takamaru, H.6
-
109
-
-
84875890253
-
HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer
-
Kim K, Jutooru I, Chadalapaka G, Johnson G, Frank J, Burghardt R et al. HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer. Oncogene 2013; 32: 1616-1625.
-
(2013)
Oncogene
, vol.32
, pp. 1616-1625
-
-
Kim, K.1
Jutooru, I.2
Chadalapaka, G.3
Johnson, G.4
Frank, J.5
Burghardt, R.6
-
110
-
-
84886733129
-
CCAT2, a novel long non-coding RNA in breast cancer: Expression study and clinical correlations
-
Redis RS, Sieuwerts AM, Look MP, Tudoran O, Ivan C, Spizzo R et al. CCAT2, a novel long non-coding RNA in breast cancer: expression study and clinical correlations. Oncotarget 2013; 4: 1748-1762.
-
(2013)
Oncotarget
, vol.4
, pp. 1748-1762
-
-
Redis, R.S.1
Sieuwerts, A.M.2
Look, M.P.3
Tudoran, O.4
Ivan, C.5
Spizzo, R.6
-
111
-
-
84880154515
-
Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
-
Du Z, Fei T, Verhaak RG, Su Z, Zhang Y, Brown M et al. Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. Nat Struct Mol Biol 2013; 20: 908-913.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 908-913
-
-
Du, Z.1
Fei, T.2
Verhaak, R.G.3
Su, Z.4
Zhang, Y.5
Brown, M.6
-
112
-
-
84881092106
-
Long non-coding RNA metastasis associated in lung adenocarcinoma transcript 1 derived miniRNA as a novel plasma-based biomarker for diagnosing prostate cancer
-
Ren S, Wang F, Shen J, Sun Y, Xu W, Lu J et al. Long non-coding RNA metastasis associated in lung adenocarcinoma transcript 1 derived miniRNA as a novel plasma-based biomarker for diagnosing prostate cancer. Eur J Cancer 2013; 49: 2949-2959.
-
(2013)
Eur J Cancer
, vol.49
, pp. 2949-2959
-
-
Ren, S.1
Wang, F.2
Shen, J.3
Sun, Y.4
Xu, W.5
Lu, J.6
-
113
-
-
84872031690
-
The long and winding road to FDA approval of a novel prostate cancer test: Our story
-
Rittenhouse H, Blase A, Shamel B, Schalken J, Groskopf J. The long and winding road to FDA approval of a novel prostate cancer test: our story. Clin Chem 2013; 59: 32-34.
-
(2013)
Clin Chem
, vol.59
, pp. 32-34
-
-
Rittenhouse, H.1
Blase, A.2
Shamel, B.3
Schalken, J.4
Groskopf, J.5
-
114
-
-
77649221027
-
NoncodingRNA sequence variations in human chronic lymphocytic leukemia and colorectal cancer
-
Wojcik SE, Rossi S, Shimizu M, Nicoloso MS, Cimmino A, Alder H et al. NoncodingRNA sequence variations in human chronic lymphocytic leukemia and colorectal cancer. Carcinogenesis 2010; 31: 208-215.
-
(2010)
Carcinogenesis
, vol.31
, pp. 208-215
-
-
Wojcik, S.E.1
Rossi, S.2
Shimizu, M.3
Nicoloso, M.S.4
Cimmino, A.5
Alder, H.6
-
115
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P et al. Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 2010; 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
-
116
-
-
84870845464
-
Systematic reconstruction of RNA functional motifs with high-throughput microfluidics
-
Martin L, Meier M, Lyons SM, Sit RV, Marzluff WF, Quake SR et al. Systematic reconstruction of RNA functional motifs with high-throughput microfluidics. Nat Methods 2012; 9: 1192-1194.
-
(2012)
Nat Methods
, vol.9
, pp. 1192-1194
-
-
Martin, L.1
Meier, M.2
Lyons, S.M.3
Sit, R.V.4
Marzluff, W.F.5
Quake, S.R.6
-
117
-
-
79960959180
-
RNA mimics of green fluorescent protein
-
Paige JS, Wu KY, Jaffrey SR. RNA mimics of green fluorescent protein. Science 2011; 333: 642-646.
-
(2011)
Science
, vol.333
, pp. 642-646
-
-
Paige, J.S.1
Wu, K.Y.2
Jaffrey, S.R.3
-
118
-
-
12944252955
-
PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer
-
Srikantan V, Zou Z, Petrovics G, Xu L, Augustus M, Davis L et al. PCGEM1, a prostate-specific gene, is overexpressed in prostate cancer. Proc Natl Acad Sci USA 2000; 97: 12216-12221.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 12216-12221
-
-
Srikantan, V.1
Zou, Z.2
Petrovics, G.3
Xu, L.4
Augustus, M.5
Davis, L.6
-
119
-
-
33645532828
-
Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1
-
Fu X, Ravindranath L, Tran N, Petrovics G, Srivastava S. Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1. DNA Cell Biol 2006; 25: 135-141.
-
(2006)
DNA Cell Biol
, vol.25
, pp. 135-141
-
-
Fu, X.1
Ravindranath, L.2
Tran, N.3
Petrovics, G.4
Srivastava, S.5
-
120
-
-
84882448188
-
Association between lncrna PCGEM1 polymorphisms and prostate cancer risk
-
S131
-
Xue Y, Wang M, Kang M, Wang Q, Wu B, Chu H et al. Association between lncrna PCGEM1 polymorphisms and prostate cancer risk. Prost Cancer Prost Dis 2013; 16: 139-144, S131.
-
(2013)
Prost Cancer Prost Dis
, vol.16
, pp. 139-144
-
-
Xue, Y.1
Wang, M.2
Kang, M.3
Wang, Q.4
Wu, B.5
Chu, H.6
-
121
-
-
84864387239
-
Elevation of highly up-regulated in liver cancer (HULC) by hepatitis B virus X protein promotes hepatoma cell proliferation via down-regulating p18
-
Du Y, Kong G, You X, Zhang S, Zhang T, Gao Y et al. Elevation of highly up-regulated in liver cancer (HULC) by hepatitis B virus X protein promotes hepatoma cell proliferation via down-regulating p18. J Biol Chem 2012; 287: 26302-26311.
-
(2012)
J Biol Chem
, vol.287
, pp. 26302-26311
-
-
Du, Y.1
Kong, G.2
You, X.3
Zhang, S.4
Zhang, T.5
Gao, Y.6
-
122
-
-
34547498546
-
A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q24.21
-
Tomlinson I, Webb E, Carvajal-Carmona L, Broderick P, Kemp Z, Spain S et al. A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q24.21. Nat Genet 2007; 39: 984-988.
-
(2007)
Nat Genet
, vol.39
, pp. 984-988
-
-
Tomlinson, I.1
Webb, E.2
Carvajal-Carmona, L.3
Broderick, P.4
Kemp, Z.5
Spain, S.6
-
123
-
-
34247548755
-
Genome-wide association study of prostate cancer identifies a second risk locus at 8q24
-
Yeager M, Orr N, Hayes RB, Jacobs KB, Kraft P, Wacholder S et al. Genome-wide association study of prostate cancer identifies a second risk locus at 8q24. Nat Genet 2007; 39: 645-649.
-
(2007)
Nat Genet
, vol.39
, pp. 645-649
-
-
Yeager, M.1
Orr, N.2
Hayes, R.B.3
Jacobs, K.B.4
Kraft, P.5
Wacholder, S.6
-
124
-
-
84898904658
-
ANRIL inhibits p15(INK4b) through the TGFbeta1 signaling pathway in human esophageal squamous cell carcinoma
-
Chen D, Zhang Z, Mao C, Zhou Y, Yu L, Yin Y et al. ANRIL inhibits p15(INK4b) through the TGFbeta1 signaling pathway in human esophageal squamous cell carcinoma. Cell Immunol 2014; 289: 91-96.
-
(2014)
Cell Immunol
, vol.289
, pp. 91-96
-
-
Chen, D.1
Zhang, Z.2
Mao, C.3
Zhou, Y.4
Yu, L.5
Yin, Y.6
-
125
-
-
84873451950
-
The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells
-
Gutschner T, Hammerle M, Eissmann M, Hsu J, Kim Y, Hung G et al. The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res 2013; 73: 1180-1189.
-
(2013)
Cancer Res
, vol.73
, pp. 1180-1189
-
-
Gutschner, T.1
Hammerle, M.2
Eissmann, M.3
Hsu, J.4
Kim, Y.5
Hung, G.6
|