-
1
-
-
77951182221
-
Rapid progress on the vertebrate tree of life
-
Thomson RC, Shaffer HB (2010) Rapid progress on the vertebrate tree of life. BMC Biol 8:19.
-
(2010)
BMC Biol
, vol.8
, pp. 19
-
-
Thomson, R.C.1
Shaffer, H.B.2
-
4
-
-
80055070300
-
Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification
-
Meredith RW, et al. (2011) Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science 334:521-524.
-
(2011)
Science
, vol.334
, pp. 521-524
-
-
Meredith, R.W.1
-
5
-
-
46449135061
-
A phylogenomic study of birds reveals their evolutionary history
-
Hackett SJ, et al. (2008) A phylogenomic study of birds reveals their evolutionary history. Science 320:1763-1768.
-
(2008)
Science
, vol.320
, pp. 1763-1768
-
-
Hackett, S.J.1
-
6
-
-
33644859481
-
-
eds Cracraft J, Donoghue MJ (Oxford Univ Press, New York)
-
Stiassny MLJ, Wiley EO, Johnson GD, de Carvalho MR (2004) Assembling the Tree of Life, eds Cracraft J, Donoghue MJ (Oxford Univ Press, New York), pp 410-429.
-
(2004)
Assembling the Tree of Life
, pp. 410-429
-
-
Stiassny, M.L.J.1
Wiley, E.O.2
Johnson, G.D.3
De Carvalho, M.R.4
-
7
-
-
34249943401
-
A new time-scale for ray-finned fish evolution
-
Hurley IA, et al. (2007) A new time-scale for ray-finned fish evolution. Proc Biol Sci 274:489-498.
-
(2007)
Proc Biol Sci
, vol.274
, pp. 489-498
-
-
Hurley, I.A.1
-
8
-
-
0003030057
-
The evolution and interrelationships of the actinopterygian fishes
-
Lauder GV, Liem KF (1983) The evolution and interrelationships of the actinopterygian fishes. Bull Mus Comp Zool 150:95-197.
-
(1983)
Bull Mus Comp Zool
, vol.150
, pp. 95-197
-
-
Lauder, G.V.1
Liem, K.F.2
-
9
-
-
0002994515
-
Review of ichthyodectiform and other Mesozoic teleost fishes and the theory and practice of classifying fossils
-
Patterson C, Rosen DE (1977) Review of ichthyodectiform and other Mesozoic teleost fishes and the theory and practice of classifying fossils. Bull Am Mus Nat Hist 158: 85-172.
-
(1977)
Bull Am Mus Nat Hist
, vol.158
, pp. 85-172
-
-
Patterson, C.1
Rosen, D.E.2
-
10
-
-
0032583425
-
Comments on basal teleosts and teleostean phylogeny, by Gloria Arratia
-
Patterson C (1998) Comments on basal teleosts and teleostean phylogeny, by Gloria Arratia. Copeia 1998:1107-1109.
-
(1998)
Copeia
, vol.1998
, pp. 1107-1109
-
-
Patterson, C.1
-
11
-
-
0001791755
-
Basal teleosts and teleostean phylogeny
-
Arratia G (1997) Basal teleosts and teleostean phylogeny. Paleo Ichth 7:5-168.
-
(1997)
Paleo Ichth
, vol.7
, pp. 5-168
-
-
Arratia, G.1
-
12
-
-
0000480605
-
Basal teleosts and teleostean phylogeny: Response to C. Patterson
-
Arratia G (1998) Basal teleosts and teleostean phylogeny: Response to C. Patterson. Copeia 1998:1109-1113.
-
(1998)
Copeia
, vol.1998
, pp. 1109-1113
-
-
Arratia, G.1
-
13
-
-
0001691335
-
-
eds Moser HG, et al. (Allen Press, Lawrence, KS)
-
Fink WL (1984) Ontogeny and Systematic of Fishes, eds Moser HG, et al. (Allen Press, Lawrence, KS), pp 202-206.
-
(1984)
Ontogeny and Systematic of Fishes
, pp. 202-206
-
-
Fink, W.L.1
-
14
-
-
0000298485
-
-
eds Stiassny MLJ, Parenti LR, Johnson GD (Academic, San Diego)
-
Johnson GD, Patterson C (1996) Interrelationships of Fishes, eds Stiassny MLJ, Parenti LR, Johnson GD (Academic, San Diego), pp 251-332.
-
(1996)
Interrelationships of Fishes
, pp. 251-332
-
-
Johnson, G.D.1
Patterson, C.2
-
15
-
-
80355143872
-
Osteology and relationships of the southern freshwater lower euteleostean fishes
-
McDowall RM, Burridge CP (2011) Osteology and relationships of the southern freshwater lower euteleostean fishes. Zoosystematics and Evolution 87:7-185.
-
(2011)
Zoosystematics and Evolution
, vol.87
, pp. 7-185
-
-
McDowall, R.M.1
Burridge, C.P.2
-
16
-
-
0024453827
-
-
eds Fernholm B, Bremer K, Jôrnvall H (Elsevier, Amsterdam)
-
Nelson G (1989) The Hierarch of Life, eds Fernholm B, Bremer K, Jôrnvall H (Elsevier, Amsterdam), pp 325-336.
-
(1989)
The Hierarch of Life
, pp. 325-336
-
-
Nelson, G.1
-
17
-
-
0034904214
-
A mitogenomic perspective on the basal teleostean phylogeny: Resolving higher-level relationships with longer DNA sequences
-
Inoue JG, Miya M, Tsukamoto K, Nishida M (2001) A mitogenomic perspective on the basal teleostean phylogeny: Resolving higher-level relationships with longer DNA sequences. Mol Phylogenet Evol 20:275-285.
-
(2001)
Mol Phylogenet Evol
, vol.20
, pp. 275-285
-
-
Inoue, J.G.1
Miya, M.2
Tsukamoto, K.3
Nishida, M.4
-
18
-
-
0027564167
-
A 28S rRNA-based phylogeny of the gnathostomes: First steps in the analysis of conflict and congruence with morphologically based cladograms
-
Lê HL, Lecointre G, Perasso R (1993) A 28S rRNA-based phylogeny of the gnathostomes: First steps in the analysis of conflict and congruence with morphologically based cladograms. Mol Phylogenet Evol 2:31-51.
-
(1993)
Mol Phylogenet Evol
, vol.2
, pp. 31-51
-
-
Lê, H.L.1
Lecointre, G.2
Perasso, R.3
-
19
-
-
69449089577
-
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
-
Alfaro ME, et al. (2009) Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates. Proc Natl Acad Sci USA 106:13410-13414.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 13410-13414
-
-
Alfaro, M.E.1
-
20
-
-
70349201094
-
Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes
-
Santini F, Harmon LJ, Carnevale G, Alfaro ME (2009) Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes. BMC Evol Biol 9:164.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 164
-
-
Santini, F.1
Harmon, L.J.2
Carnevale, G.3
Alfaro, M.E.4
-
21
-
-
0038175392
-
Basal euteleostean relationships: A mitogenomic perspective on the phylogenetic reality of the "Protacanthopterygii"
-
Ishiguro NB, Miya M, Nishida M (2003) Basal euteleostean relationships: A mitogenomic perspective on the phylogenetic reality of the " Protacanthopterygii". Mol Phylogenet Evol 27:476-488.
-
(2003)
Mol Phylogenet Evol
, vol.27
, pp. 476-488
-
-
Ishiguro, N.B.1
Miya, M.2
Nishida, M.3
-
23
-
-
78049358314
-
Phylogenetic position of the enigmatic Lepidogalaxias salamandroides with comment on the orders of lower euteleostean fishes
-
Li J, et al. (2010) Phylogenetic position of the enigmatic Lepidogalaxias salamandroides with comment on the orders of lower euteleostean fishes. Mol Phylogenet Evol 57:932-936.
-
(2010)
Mol Phylogenet Evol
, vol.57
, pp. 932-936
-
-
Li, J.1
-
24
-
-
0037215848
-
Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences
-
Miya M, et al. (2003) Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol 26:121-138.
-
(2003)
Mol Phylogenet Evol
, vol.26
, pp. 121-138
-
-
Miya, M.1
-
25
-
-
84865281081
-
The evolution of pharyngognathy: A phylogenetic and functional appraisal of the pharyngeal jaw key innovation in Labroidei and beyond
-
10.1093/sysbio/sys060
-
Wainwright PC, et al. (2012) The evolution of pharyngognathy: A phylogenetic and functional appraisal of the pharyngeal jaw key innovation in Labroidei and beyond. Syst Biol, 10.1093/sysbio/sys060.
-
(2012)
Syst Biol
-
-
Wainwright, P.C.1
-
26
-
-
58149092483
-
RNF213, a new nuclear marker for acanthomorph phylogeny
-
Li B, et al. (2009) RNF213, a new nuclear marker for acanthomorph phylogeny. Mol Phylogenet Evol 50:345-363.
-
(2009)
Mol Phylogenet Evol
, vol.50
, pp. 345-363
-
-
Li, B.1
-
27
-
-
33847735952
-
Casting the percomorph net widely: The importance of broad taxonomic sampling in the search for the placement of serranid and percid fishes
-
Smith WL, Craig MT (2007) Casting the percomorph net widely: The importance of broad taxonomic sampling in the search for the placement of serranid and percid fishes. Copeia 2007:35-55.
-
(2007)
Copeia
, vol.2007
, pp. 35-55
-
-
Smith, W.L.1
Craig, M.T.2
-
28
-
-
77649305727
-
Evolutionary history of anglerfishes (Teleostei: Lophiiformes): A mitogenomic perspective
-
Miya M, et al. (2010) Evolutionary history of anglerfishes (Teleostei: Lophiiformes): A mitogenomic perspective. BMC Evol Biol 10:58.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 58
-
-
Miya, M.1
-
29
-
-
1242274629
-
Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
-
Vandepoele K, De Vos W, Taylor JS, Meyer A, Van de Peer Y (2004) Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci USA 101: 1638-1643.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1638-1643
-
-
Vandepoele, K.1
De Vos, W.2
Taylor, J.S.3
Meyer, A.4
Van De Peer, Y.5
-
30
-
-
0002682179
-
The relationships of the palaeoniscid fishes, a review based on new specimens of Mimia and Moythomasia from Upper Devonian of Western Australia
-
Gardiner BG (1984) The relationships of the palaeoniscid fishes, a review based on new specimens of Mimia and Moythomasia from Upper Devonian of Western Australia. Bull Brit Mus (Nat Hist) Geol 37:173-428.
-
(1984)
Bull Brit Mus (Nat Hist) Geol
, vol.37
, pp. 173-428
-
-
Gardiner, B.G.1
-
31
-
-
12244307474
-
Basal actinopterygian relationships: A mitogenomic perspective on the phylogeny of the "ancient fish"
-
Inoue JG, Miya M, Tsukamoto K, NishidaM (2003) Basal actinopterygian relationships: A mitogenomic perspective on the phylogeny of the "ancient fish". Mol Phylogenet Evol 26:110-120.
-
(2003)
Mol Phylogenet Evol
, vol.26
, pp. 110-120
-
-
Inoue, J.G.1
Miya, M.2
Tsukamoto, K.3
Nishida, M.4
-
32
-
-
47249090871
-
Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci
-
Li CH, Lu GQ, Ortí G (2008) Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci. Syst Biol 57:519-539.
-
(2008)
Syst Biol
, vol.57
, pp. 519-539
-
-
Li, C.H.1
Lu, G.Q.2
Ortí, G.3
-
33
-
-
70450225306
-
Higher and lower-level relationships of the deep-sea fish order Alepocephaliformes (Teleostei: Otocephala) inferred from whole mitogenome sequences
-
Poulsen JY, et al. (2009) Higher and lower-level relationships of the deep-sea fish order Alepocephaliformes (Teleostei: Otocephala) inferred from whole mitogenome sequences. Biol J Linn Soc Lond 98:923-936.
-
(2009)
Biol J Linn Soc Lond
, vol.98
, pp. 923-936
-
-
Poulsen, J.Y.1
-
34
-
-
0036623377
-
Phylogenetic placement of retropinnid fishes: Data set incongruence can be reduced by using asymmetric character state transformation costs
-
Waters JM, et al. (2002) Phylogenetic placement of retropinnid fishes: Data set incongruence can be reduced by using asymmetric character state transformation costs. Syst Biol 51:432-449.
-
(2002)
Syst Biol
, vol.51
, pp. 432-449
-
-
Waters, J.M.1
-
35
-
-
84858080658
-
Nuclear gene-inferred phylogenies resolve the relationships of the enigmatic Pygmy Sunfishes, Elassoma (Teleostei: Percomorpha)
-
Near TJ, et al. (2012) Nuclear gene-inferred phylogenies resolve the relationships of the enigmatic Pygmy Sunfishes, Elassoma (Teleostei: Percomorpha). Mol Phylogenet Evol 63:388-395.
-
(2012)
Mol Phylogenet Evol
, vol.63
, pp. 388-395
-
-
Near, T.J.1
-
36
-
-
79959348651
-
Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation
-
Nakatani M, Miya M, Mabuchi K, Saitoh K, Nishida M (2011) Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation. BMC Evol Biol 11:177.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 177
-
-
Nakatani, M.1
Miya, M.2
Mabuchi, K.3
Saitoh, K.4
Nishida, M.5
-
37
-
-
33645772189
-
The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes
-
Yamanoue Y, Miya M, Inoue JG, Matsuura K, Nishida M (2006) The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes. Genes Genet Syst 81:29-39.
-
(2006)
Genes Genet Syst
, vol.81
, pp. 29-39
-
-
Yamanoue, Y.1
Miya, M.2
Inoue, J.G.3
Matsuura, K.4
Nishida, M.5
-
38
-
-
0001023769
-
-
ed Benton MJ (Chapman and Hall, London)
-
Patterson C (1993) Fossil Record 2, ed Benton MJ (Chapman and Hall, London), pp 621-656.
-
(1993)
Fossil Record 2
, pp. 621-656
-
-
Patterson, C.1
-
39
-
-
84864018361
-
Five hundred million years of extinction and recovery: A Phanerozoic survey of large-scale diversity patterns in fishes
-
Friedman M, Sallan LC (2012) Five hundred million years of extinction and recovery: A Phanerozoic survey of large-scale diversity patterns in fishes. Palaeontology 55: 707-742.
-
(2012)
Palaeontology
, vol.55
, pp. 707-742
-
-
Friedman, M.1
Sallan, L.C.2
-
41
-
-
33947659375
-
A practical approach to phylogenomics: The phylogeny of ray-finned fish (Actinopterygii) as a case study
-
Li CH, Ortí G, Zhang G, Lu GQ (2007) A practical approach to phylogenomics: The phylogeny of ray-finned fish (Actinopterygii) as a case study. BMC Evol Biol 7:44.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 44
-
-
Li, C.H.1
Ortí, G.2
Zhang, G.3
Lu, G.Q.4
-
42
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
43
-
-
78549247493
-
iGTP: A software package for large-scale gene tree parsimony analysis
-
Chaudhary R, Bansal MS, Wehe A, Fernández-Baca D, Eulenstein O (2010) iGTP: A software package for large-scale gene tree parsimony analysis. BMC Bioinformatics 11:574.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 574
-
-
Chaudhary, R.1
Bansal, M.S.2
Wehe, A.3
Fernández-Baca, D.4
Eulenstein, O.5
-
44
-
-
77954202497
-
DendroPy: A Python library for phylogenetic computing
-
Sukumaran J, Holder MT (2010) DendroPy: A Python library for phylogenetic computing. Bioinformatics 26:1569-1571.
-
(2010)
Bioinformatics
, vol.26
, pp. 1569-1571
-
-
Sukumaran, J.1
Holder, M.T.2
-
45
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
|