-
1
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel DP (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
33644756685
-
Micro RNAs in animal development
-
Plasterk RHA (2006) Micro RNAs in animal development. Cell 124: 877-881.
-
(2006)
Cell
, vol.124
, pp. 877-881
-
-
Plasterk, R.H.A.1
-
4
-
-
9344235449
-
Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs
-
Cai XZ, Hagedorn CH, Cullen BR (2004) Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. Rna-a Publication of the Rna Society 10: 1957-1966.
-
(2004)
Rna-a Publication of The Rna Society
, vol.10
, pp. 1957-1966
-
-
Cai, X.Z.1
Hagedorn, C.H.2
Cullen, B.R.3
-
5
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han JJ, Yeom KH, Lee S, et al. (2004) MicroRNA genes are transcribed by RNA polymerase II. Embo Journal 23: 4051-4060.
-
(2004)
Embo Journal
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.J.3
Yeom, K.H.4
Lee, S.5
-
6
-
-
38349169664
-
Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
-
Filipowicz W, Bhattacharyya SN, Sonenberg N (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nature Reviews Genetics 9: 102-114.
-
(2008)
Nature Reviews Genetics
, vol.9
, pp. 102-114
-
-
Filipowicz, W.1
Bhattacharyya, S.N.2
Sonenberg, N.3
-
7
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, et al. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nature Biotechnology 26: 407-415.
-
(2008)
Nature Biotechnology
, vol.26
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
-
8
-
-
17844364875
-
Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C-elegans developmental timing
-
Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, et al. (2001) Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C-elegans developmental timing. Cell 106: 23-34.
-
(2001)
Cell
, vol.106
, pp. 23-34
-
-
Grishok, A.1
Pasquinelli, A.E.2
Conte, D.3
Li, N.4
Parrish, S.5
-
9
-
-
0035800521
-
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
-
Hutvagner G, McLachlan J, Pasquinelli AE, Balint E, Tuschl T, et al. (2001) A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293: 834-838.
-
(2001)
Science
, vol.293
, pp. 834-838
-
-
Hutvagner, G.1
McLachlan, J.2
Pasquinelli, A.E.3
Balint, E.4
Tuschl, T.5
-
10
-
-
0347988235
-
Nuclear export of microRNA precursors
-
Lund E, Guttinger S, Calado A, Dahlberg JE, Kutay U (2004) Nuclear export of microRNA precursors. Science 303: 95-98.
-
(2004)
Science
, vol.303
, pp. 95-98
-
-
Lund, E.1
Guttinger, S.2
Calado, A.3
Dahlberg, J.E.4
Kutay, U.5
-
11
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz DS, Hutvagner G, Du T, Xu ZS, Aronin N, et al. (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell 115: 199-208.
-
(2003)
Cell
, vol.115
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.3
Xu, Z.S.4
Aronin, N.5
-
12
-
-
77955315123
-
Asymmetry in the assembly of the RNAi enzyme complex
-
(Reprinted from Cell, vol 115, pg 199-208, 2003)
-
Schwarz DS, Hutvagner G, Du TT, Xu ZS, Aronin N, et al. (2007) Asymmetry in the assembly of the RNAi enzyme complex (Reprinted from Cell, vol 115, pg 199-208, 2003). Cell 131: 30-40.
-
(2007)
Cell
, vol.131
, pp. 30-40
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.T.3
Xu, Z.S.4
Aronin, N.5
-
13
-
-
41649089309
-
The regulatory activity of microRNA star species has substantial influence on microRNA and 3 ' UTR evolution
-
Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, et al. (2008) The regulatory activity of microRNA star species has substantial influence on microRNA and 3 ' UTR evolution. Nature Structural & Molecular Biology 15: 354-363.
-
(2008)
Nature Structural & Molecular Biology
, vol.15
, pp. 354-363
-
-
Okamura, K.1
Phillips, M.D.2
Tyler, D.M.3
Duan, H.4
Chou, Y.T.5
-
14
-
-
33746274670
-
Comprehensive thermodynamic analysis of 3 ' double-nucleotide overhangs neighboring Watson-Crick terminal base pairs
-
O'Toole AS, Miller S, Haines N, Zink MC, Serra MJ (2006) Comprehensive thermodynamic analysis of 3 ' double-nucleotide overhangs neighboring Watson-Crick terminal base pairs. Nucleic Acids Research 34: 3338-3344.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. 3338-3344
-
-
O'Toole, A.S.1
Miller, S.2
Haines, N.3
Zink, M.C.4
Serra, M.J.5
-
15
-
-
55249115975
-
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
-
Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, et al. (2008) Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 455: 1193-U1115.
-
(2008)
Nature
, vol.455
-
-
Grimson, A.1
Srivastava, M.2
Fahey, B.3
Woodcroft, B.J.4
Chiang, H.R.5
-
16
-
-
33846699083
-
A hexanucleotide element directs microRNA nuclear import
-
Hwang HW, Wentzel EA, Mendell JT (2007) A hexanucleotide element directs microRNA nuclear import. Science 315: 97-100.
-
(2007)
Science
, vol.315
, pp. 97-100
-
-
Hwang, H.W.1
Wentzel, E.A.2
Mendell, J.T.3
-
17
-
-
0142165224
-
Functional siRNAs and rniRNAs exhibit strand bias
-
Khvorova A, Reynolds A, Jayasena SD (2003) Functional siRNAs and rniRNAs exhibit strand bias. Cell 115: 209-216.
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
18
-
-
34848860582
-
Tissue-dependent paired expression of miRNAs
-
Ro S, Park C, Young D, Sanders KM, Yan W (2007) Tissue-dependent paired expression of miRNAs. Nucleic Acids Research 35: 5944-5953.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 5944-5953
-
-
Ro, S.1
Park, C.2
Young, D.3
Sanders, K.M.4
Yan, W.5
-
19
-
-
77349092849
-
Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
-
Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang HB, Arrese EL, et al. (2010) Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. Bmc Genomics 11: 52.
-
(2010)
Bmc Genomics
, vol.11
, pp. 52
-
-
Jagadeeswaran, G.1
Zheng, Y.2
Sumathipala, N.3
Jiang, H.B.4
Arrese, E.L.5
-
20
-
-
75649129754
-
Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway
-
Ghildiyal M, Xu J, Seitz H, Weng ZP, Zamore PD (2010) Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway. Rna-a Publication of the Rna Society 16: 43-56.
-
(2010)
Rna-a Publication of The Rna Society
, vol.16
, pp. 43-56
-
-
Ghildiyal, M.1
Xu, J.2
Seitz, H.3
Weng, Z.P.4
Zamore, P.D.5
-
21
-
-
60849084449
-
Polymorphic mature microRNAs from passenger strand of pre-miR-146a contribute to thyroid cancer
-
Jazdzewski K, Liyanarachchi S, Swierniak M, Pachucki J, Ringel MD, et al. (2009) Polymorphic mature microRNAs from passenger strand of pre-miR-146a contribute to thyroid cancer. Proceedings of the National Academy of Sciences of the United States of America 106: 1502-1505.
-
(2009)
Proceedings of The National Academy of Sciences of The United States of America
, vol.106
, pp. 1502-1505
-
-
Jazdzewski, K.1
Liyanarachchi, S.2
Swierniak, M.3
Pachucki, J.4
Ringel, M.D.5
-
22
-
-
58549086017
-
The deep evolution of metazoan microRNAs
-
Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, et al. (2009) The deep evolution of metazoan microRNAs. Evolution & Development 11: 50-68.
-
(2009)
Evolution & Development
, vol.11
, pp. 50-68
-
-
Wheeler, B.M.1
Heimberg, A.M.2
Moy, V.N.3
Sperling, E.A.4
Holstein, T.W.5
-
23
-
-
53349180220
-
The evolution and functional diversification of animal microRNA genes
-
Liu N, Okamura K, Tyler DM, Phillips MD, Chung WJ, et al. (2008) The evolution and functional diversification of animal microRNA genes. Cell Research 18: 985-996.
-
(2008)
Cell Research
, vol.18
, pp. 985-996
-
-
Liu, N.1
Okamura, K.2
Tyler, D.M.3
Phillips, M.D.4
Chung, W.J.5
-
26
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T (2001) Identification of novel genes coding for small expressed RNAs. Science 294: 853-858.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
27
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau NC, Lim LP, Weinstein EG, Bartel DP (2001) An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
28
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee RC, Ambros V (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science 294: 862-864.
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
29
-
-
33846283385
-
The evolution of gene regulation by transcription factors and microRNAs
-
Chen K, Rajewsky N (2007) The evolution of gene regulation by transcription factors and microRNAs. Nature Reviews Genetics 8: 93-103.
-
(2007)
Nature Reviews Genetics
, vol.8
, pp. 93-103
-
-
Chen, K.1
Rajewsky, N.2
-
30
-
-
71049188566
-
Haplotype Distribution and Evolutionary Pattern of miR-17 and miR-124 Families Based on Population Analysis
-
Guo L, Sun BL, Sang F, Wang W, Lu ZH (2009) Haplotype Distribution and Evolutionary Pattern of miR-17 and miR-124 Families Based on Population Analysis. PLoS ONE 4: e7944.
-
(2009)
PLoS ONE
, vol.4
-
-
Guo, L.1
Sun, B.L.2
Sang, F.3
Wang, W.4
Lu, Z.H.5
-
31
-
-
33644772270
-
The expansion of the metazoan microRNA repertoire
-
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, et al. (2006) The expansion of the metazoan microRNA repertoire. Bmc Genomics 7: 25.
-
(2006)
Bmc Genomics
, vol.7
, pp. 25
-
-
Hertel, J.1
Lindemeyer, M.2
Missal, K.3
Fried, C.4
Tanzer, A.5
-
34
-
-
42949146575
-
MicroRNAs and the advent of vertebrate morphological complexity
-
Heimberg AM, Sempere LF, Moy VN, Donoghue PCJ, Peterson KJ (2008) MicroRNAs and the advent of vertebrate morphological complexity. Proceedings of the National Academy of Sciences of the United States of America 105: 2946-2950.
-
(2008)
Proceedings of The National Academy of Sciences of The United States of America
, vol.105
, pp. 2946-2950
-
-
Heimberg, A.M.1
Sempere, L.F.2
Moy, V.N.3
Donoghue, P.C.J.4
Peterson, K.J.5
-
35
-
-
20144387528
-
Evolutionary patterns of non-coding RNAs
-
Bompfunewerer AF, Flamm C, Fried C, Fritzsch G, Hofacker IL, et al. (2005) Evolutionary patterns of non-coding RNAs. Theory in Biosciences 123: 301-369.
-
(2005)
Theory In Biosciences
, vol.123
, pp. 301-369
-
-
Bompfunewerer, A.F.1
Flamm, C.2
Fried, C.3
Fritzsch, G.4
Hofacker, I.L.5
-
36
-
-
63649138643
-
miR-124 regulates adult neurogenesis in the subventricular zone stem cell niche
-
Cheng LC, Pastrana E, Tavazoie M, Doetsch F (2009) miR-124 regulates adult neurogenesis in the subventricular zone stem cell niche. Nature Neuroscience 12: 399-408.
-
(2009)
Nature Neuroscience
, vol.12
, pp. 399-408
-
-
Cheng, L.C.1
Pastrana, E.2
Tavazoie, M.3
Doetsch, F.4
-
37
-
-
31044455031
-
RAKE and LNA-ISH reveal microRNA expression and localization in archival human brain
-
Nelson PT, Baldwin DA, Kloosterman WP, Kauppinen S, Plasterk RHA, et al. (2006) RAKE and LNA-ISH reveal microRNA expression and localization in archival human brain. Rna-a Publication of the Rna Society 12: 187-191.
-
(2006)
Rna-a Publication of The Rna Society
, vol.12
, pp. 187-191
-
-
Nelson, P.T.1
Baldwin, D.A.2
Kloosterman, W.P.3
Kauppinen, S.4
Plasterk, R.H.A.5
-
38
-
-
18444415448
-
Regulation of miRNA expression during neural cell specification
-
Smirnova L, Grafe A, Seiler A, Schumacher S, Nitsch R, et al. (2005) Regulation of miRNA expression during neural cell specification. European Journal of Neuroscience 21: 1469-1477.
-
(2005)
European Journal of Neuroscience
, vol.21
, pp. 1469-1477
-
-
Smirnova, L.1
Grafe, A.2
Seiler, A.3
Schumacher, S.4
Nitsch, R.5
-
39
-
-
11844262661
-
Phylogenetic shadowing and computational identification of human microRNA genes
-
Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RHA, et al. (2005) Phylogenetic shadowing and computational identification of human microRNA genes. Cell 120: 21-24.
-
(2005)
Cell
, vol.120
, pp. 21-24
-
-
Berezikov, E.1
Guryev, V.2
van de Belt, J.3
Wienholds, E.4
Plasterk, R.H.A.5
-
41
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih IH, Jones-Rhoades MW, Bartel DP, Burge CB (2003) Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
42
-
-
36448991500
-
Clustal W and clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
-
43
-
-
1542347067
-
Neighbor-Net: An agglomerative method for the construction of phylogenetic networks
-
Bryant D, Moulton V (2004) Neighbor-Net: An agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution 21: 255-265.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 255-265
-
-
Bryant, D.1
Moulton, V.2
-
44
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molecular biology and evolution 23: 254.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 254
-
-
Huson, D.H.1
Bryant, D.2
-
45
-
-
55549129277
-
In-depth characterization of the microRNA transcriptome in a leukemia progression model
-
Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, et al. (2008) In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Research 18: 1787-1797.
-
(2008)
Genome Research
, vol.18
, pp. 1787-1797
-
-
Kuchenbauer, F.1
Morin, R.D.2
Argiropoulos, B.3
Petriv, O.I.4
Griffith, M.5
-
46
-
-
0037197803
-
Identification of tissue-specific microRNAs from mouse
-
Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, et al. (2002) Identification of tissue-specific microRNAs from mouse. Current Biology 12: 735-739.
-
(2002)
Current Biology
, vol.12
, pp. 735-739
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Yalcin, A.3
Meyer, J.4
Lendeckel, W.5
-
47
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Research 18: 610-621.
-
(2008)
Genome Research
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
-
48
-
-
33845436047
-
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C-elegans
-
Ruby JG, Jan C, Player C, Axtell MJ, Lee W, et al. (2006) Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C-elegans. Cell 127: 1193-1207.
-
(2006)
Cell
, vol.127
, pp. 1193-1207
-
-
Ruby, J.G.1
Jan, C.2
Player, C.3
Axtell, M.J.4
Lee, W.5
|