-
1
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
2
-
-
58249121729
-
RNAalifold: Improved consensus structure prediction for RNA alignments
-
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF (2008) RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 9: 474
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 474
-
-
Bernhart, S.H.1
Hofacker, I.L.2
Will, S.3
Gruber, A.R.4
Stadler, P.F.5
-
3
-
-
77952368550
-
Mammalian microRNAs: Experimental evaluation of novel and previously annotated genes
-
Chiang HR et al (2010) Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. Genes Dev 24: 992-1009
-
(2010)
Genes Dev
, vol.24
, pp. 992-1009
-
-
Chiang, H.R.1
-
4
-
-
70449127022
-
Hierarchical rules for Argonaute loading in Drosophila
-
Czech B, Zhou R, Erlich Y, Brennecke J, Binari R, Villalta C, Gordon A, Perrimon N, Hannon GJ (2009) Hierarchical rules for Argonaute loading in Drosophila. Mol Cell 36: 445-456
-
(2009)
Mol Cell
, vol.36
, pp. 445-456
-
-
Czech, B.1
Zhou, R.2
Erlich, Y.3
Brennecke, J.4
Binari, R.5
Villalta, C.6
Gordon, A.7
Perrimon, N.8
Hannon, G.J.9
-
5
-
-
70350705948
-
Repertoire and evolution of miRNA genes in four divergent nematode species
-
De Wit E, Linsen S, Cuppen E, Berezikov E (2009) Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res 19: 2064-2074
-
(2009)
Genome Res
, vol.19
, pp. 2064-2074
-
-
De Wit, E.1
Linsen, S.2
Cuppen, E.3
Berezikov, E.4
-
6
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS (2003) MicroRNA targets in Drosophila. Genome Biol 5: R1
-
(2003)
Genome Biol
, vol.5
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
7
-
-
75649129754
-
Sorting of drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway
-
Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD (2009) Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway. RNA 16: 43-56
-
(2009)
RNA
, vol.16
, pp. 43-56
-
-
Ghildiyal, M.1
Xu, J.2
Seitz, H.3
Weng, Z.4
Zamore, P.D.5
-
8
-
-
44849106063
-
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
-
Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML (2008) A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. Genome Res 18: 957-964
-
(2008)
Genome Res
, vol.18
, pp. 957-964
-
-
Glazov, E.A.1
Cottee, P.A.2
Barris, W.C.3
Moore, R.J.4
Dalrymple, B.P.5
Tizard, M.L.6
-
9
-
-
13444309635
-
RALEE-RNA ALignment editor in Emacs
-
Griffiths-Jones S (2005) RALEE-RNA ALignment editor in Emacs. Bioinformatics 21: 257-259
-
(2005)
Bioinformatics
, vol.21
, pp. 257-259
-
-
Griffiths-Jones, S.1
-
11
-
-
55249115975
-
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
-
Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP (2008) Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 455: 1193-1197
-
(2008)
Nature
, vol.455
, pp. 1193-1197
-
-
Grimson, A.1
Srivastava, M.2
Fahey, B.3
Woodcroft, B.J.4
Chiang, H.R.5
King, N.6
Degnan, B.M.7
Rokhsar, D.S.8
Bartel, D.P.9
-
12
-
-
26944431852
-
Small RNA asymmetry in RNAi: Function in RISC assembly and gene regulation
-
Hutvagner G (2005) Small RNA asymmetry in RNAi: function in RISC assembly and gene regulation. FEBS Lett 579: 5850-5857
-
(2005)
FEBS Lett
, vol.579
, pp. 5850-5857
-
-
Hutvagner, G.1
-
13
-
-
0142165224
-
Functional siRNAs and miRNAs exhibit strand bias
-
Khvorova A, Reynolds A, Jayasena SD (2003) Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209-216
-
(2003)
Cell
, vol.115
, pp. 209-216
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
14
-
-
34250877841
-
A mammalian microRNA expression atlas based on small RNA library sequencing
-
Landgraf P et al (2007) A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129: 1401-1414
-
(2007)
Cell
, vol.129
, pp. 1401-1414
-
-
Landgraf, P.1
-
15
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
16
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA et al (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
17
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee Y et al (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425: 415-419
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
-
21
-
-
70449122099
-
Distinct mechanisms for microRNA strand selection by Drosophila Argonautes
-
Okamura K, Liu N, Lai EC (2009) Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Mol Cell 36: 431-444
-
(2009)
Mol Cell
, vol.36
, pp. 431-444
-
-
Okamura, K.1
Liu, N.2
Lai, E.C.3
-
22
-
-
34848860582
-
Tissue-dependent paired expression of miRNAs
-
Ro S, Park C, Young D, Sanders KM, Yan W (2007) Tissue-dependent paired expression of miRNAs. Nucleic Acids Res 35: 5944-5953
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5944-5953
-
-
Ro, S.1
Park, C.2
Young, D.3
Sanders, K.M.4
Yan, W.5
-
23
-
-
38149071979
-
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
-
Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC (2007) Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res 17: 1850-1864
-
(2007)
Genome Res
, vol.17
, pp. 1850-1864
-
-
Ruby, J.G.1
Stark, A.2
Johnston, W.K.3
Kellis, M.4
Bartel, D.P.5
Lai, E.C.6
-
24
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz DS, Hutvágner G, Du T, Xu Z, Aronin N, Zamore PD (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell 115: 199-208
-
(2003)
Cell
, vol.115
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvágner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
25
-
-
0037790717
-
Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-complex gene activity
-
Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V (2003) Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-complex gene activity. Dev Biol 259: 9-18
-
(2003)
Dev Biol
, vol.259
, pp. 9-18
-
-
Sempere, L.F.1
Sokol, N.S.2
Dubrovsky, E.B.3
Berger, E.M.4
Ambros, V.5
-
26
-
-
59649103076
-
A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate
-
Shi W, Hendrix D, Levine M, Haley B (2009) A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate. Nat Struct Mol Biol 16: 183-189
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 183-189
-
-
Shi, W.1
Hendrix, D.2
Levine, M.3
Haley, B.4
-
28
-
-
36049018312
-
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
-
W. H. Freeman & Costark A et al (2007) Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 450: 219-232
-
(2007)
Nature
, vol.450
, pp. 219-232
-
-
Freeman, W.H.1
Costark, A.2
-
29
-
-
67649885497
-
Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust
-
Wei Y, Chen S, Yang P, Ma Z, Kang L (2009) Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. Genome Biol 10: R6
-
(2009)
Genome Biol
, vol.10
-
-
Wei, Y.1
Chen, S.2
Yang, P.3
Ma, Z.4
Kang, L.5
-
30
-
-
58549086017
-
The deep evolution of metazoan microRNAs
-
Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ (2009) The deep evolution of metazoan microRNAs. Evol Dev 11:50-68
-
(2009)
Evol Dev
, vol.11
, pp. 50-68
-
-
Wheeler, B.M.1
Heimberg, A.M.2
Moy, V.N.3
Sperling, E.A.4
Holstein, T.W.5
Heber, S.6
Peterson, K.J.7
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