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Volumn 289, Issue 6, 2014, Pages 1045-1060

Whole-genome duplication in teleost fishes and its evolutionary consequences

Author keywords

Gene pairs; Neofunctionalization; Paralogue; Radiation; Subfunctionalization

Indexed keywords

CHROMOSOME NUMBER; ENVIRONMENTAL CHANGE; EVOLUTIONARY ADAPTATION; GENE CONVERSION; GENE DOSAGE; GENE DUPLICATION; GENE FUNCTION; GENETIC CODE; NONHUMAN; REVIEW; TELEOST; WHOLE GENOME DUPLICATION; ANIMAL; CLASSIFICATION; FISH; GENETICS; GENOME; MOLECULAR EVOLUTION;

EID: 84922482278     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-014-0889-2     Document Type: Review
Times cited : (606)

References (151)
  • 1
    • 0024026752 scopus 로고
    • Effect of limited homology on gene conversion in a Saccharomyces cerevisiae plasmid recombination system
    • COI: 1:CAS:528:DyaL1cXksV2ntr4%3D, PID: 3043177
    • Ahn BY, Dornfeld KJ, Fagrelius TJ, Livingston DM (1988) Effect of limited homology on gene conversion in a Saccharomyces cerevisiae plasmid recombination system. Mol Cell Biol 8:2442–2448
    • (1988) Mol Cell Biol , vol.8 , pp. 2442-2448
    • Ahn, B.Y.1    Dornfeld, K.J.2    Fagrelius, T.J.3    Livingston, D.M.4
  • 2
    • 84884586533 scopus 로고    scopus 로고
    • Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae
    • COI: 1:CAS:528:DC%2BC3sXhtlekurvJ, PID: 23933489
    • Alexandrou MA, Swartz BA, Matzke NJ, Oakley TH (2013) Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Mol Phylogenet Evol 69:514–523
    • (2013) Mol Phylogenet Evol , vol.69 , pp. 514-523
    • Alexandrou, M.A.1    Swartz, B.A.2    Matzke, N.J.3    Oakley, T.H.4
  • 3
    • 67650165673 scopus 로고    scopus 로고
    • Comparative genome mapping reveals evidence of gene conversion between Sox9 paralogs of rainbow trout (Oncorhynchus mykiss)
    • PID: 20403766
    • Alfaqih MA, Steele CA, Morris RT, Thorgaard GH (2009) Comparative genome mapping reveals evidence of gene conversion between Sox9 paralogs of rainbow trout (Oncorhynchus mykiss). Comp Biochem Physiol Part D Genomics Proteomics 4:147–153
    • (2009) Comp Biochem Physiol Part D Genomics Proteomics , vol.4 , pp. 147-153
    • Alfaqih, M.A.1    Steele, C.A.2    Morris, R.T.3    Thorgaard, G.H.4
  • 4
    • 0017835334 scopus 로고
    • Protein polymorphism and the rate of loss of duplicate gene expression
    • COI: 1:CAS:528:DyaE1cXktVenu7w%3D, PID: 628437
    • Allendorf FW (1978) Protein polymorphism and the rate of loss of duplicate gene expression. Nature 272:76–78
    • (1978) Nature , vol.272 , pp. 76-78
    • Allendorf, F.W.1
  • 5
    • 0033002109 scopus 로고    scopus 로고
    • Systematic biology of gymnotiform and mormyriform electric fishes: phylogenetic relationships, molecular clocks and rates of evolution in the mitochondrial rRNA genes
    • Alves G (1999) Systematic biology of gymnotiform and mormyriform electric fishes: phylogenetic relationships, molecular clocks and rates of evolution in the mitochondrial rRNA genes. J Exp Biol 202:1167–1183
    • (1999) J Exp Biol , vol.202 , pp. 1167-1183
    • Alves, G.1
  • 7
    • 0031006339 scopus 로고    scopus 로고
    • Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes
    • COI: 1:CAS:528:DyaK2sXivFKhsbo%3D, PID: 9140399
    • Aparicio S, Hawker K, Cottage A, Mikawa Y, Zuo L, Venkatesh B, Chen E, Krumlauf R, Brenner S (1997) Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes. Nat Genet 16:79–83
    • (1997) Nat Genet , vol.16 , pp. 79-83
    • Aparicio, S.1    Hawker, K.2    Cottage, A.3    Mikawa, Y.4    Zuo, L.5    Venkatesh, B.6    Chen, E.7    Krumlauf, R.8    Brenner, S.9
  • 9
    • 78650648378 scopus 로고    scopus 로고
    • Old gene duplication facilitates origin and diversification of an innovative communication system—twice
    • COI: 1:CAS:528:DC%2BC3MXitFGl, PID: 21127261
    • Arnegard ME, Zwickl DJ, Lu Y, Zakon HH (2010) Old gene duplication facilitates origin and diversification of an innovative communication system—twice. Proc Natl Acad Sci USA 107:22172–22177
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 22172-22177
    • Arnegard, M.E.1    Zwickl, D.J.2    Lu, Y.3    Zakon, H.H.4
  • 13
    • 0032970341 scopus 로고    scopus 로고
    • Metallothioneins in antarctic fish: evidence for independent duplication and gene conversion
    • COI: 1:CAS:528:DyaK1MXksFOls78%3D, PID: 10406107
    • Bargelloni L, Scudiero R, Parisi E, Carginale V, Capasso C, Patarnello T (1999) Metallothioneins in antarctic fish: evidence for independent duplication and gene conversion. Mol Biol Evol 16:885–897
    • (1999) Mol Biol Evol , vol.16 , pp. 885-897
    • Bargelloni, L.1    Scudiero, R.2    Parisi, E.3    Carginale, V.4    Capasso, C.5    Patarnello, T.6
  • 14
    • 72049089354 scopus 로고    scopus 로고
    • Evidence for escape from adaptive conflict?
    • COI: 1:CAS:528:DC%2BD1MXhsFersr3O, PID: 20010636, ; discussion E2-3
    • Barkman T, Zhang J (2009) Evidence for escape from adaptive conflict? Nature 462:E1; discussion E2-3
    • (2009) Nature , vol.462 , pp. E1
    • Barkman, T.1    Zhang, J.2
  • 16
    • 33646885704 scopus 로고    scopus 로고
    • Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration
    • COI: 1:CAS:528:DC%2BD28XlsVGqur0%3D, PID: 16547150
    • Braasch I, Salzburger W, Meyer A (2006) Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration. Mol Biol Evol 23:1192–1202
    • (2006) Mol Biol Evol , vol.23 , pp. 1192-1202
    • Braasch, I.1    Salzburger, W.2    Meyer, A.3
  • 18
    • 84875248174 scopus 로고    scopus 로고
    • Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates
    • PID: 23291262
    • Canestro C, Albalat R, Irimia M, Garcia-Fernandez J (2013) Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates. Semin Cell Dev Biol 24:83–94
    • (2013) Semin Cell Dev Biol , vol.24 , pp. 83-94
    • Canestro, C.1    Albalat, R.2    Irimia, M.3    Garcia-Fernandez, J.4
  • 19
    • 0034625265 scopus 로고    scopus 로고
    • Endless forms: the evolution of gene regulation and morphological diversity
    • COI: 1:CAS:528:DC%2BD3cXkt1Wrsbk%3D, PID: 10892643
    • Carroll SB (2000) Endless forms: the evolution of gene regulation and morphological diversity. Cell 101:577–580
    • (2000) Cell , vol.101 , pp. 577-580
    • Carroll, S.B.1
  • 20
    • 83155191058 scopus 로고    scopus 로고
    • The odds of duplicate gene persistence after polyploidization
    • COI: 1:CAS:528:DC%2BC38Xitl2qs7o%3D
    • Chain Frederic J J, Dushoff J, Evans BJ (2011) The odds of duplicate gene persistence after polyploidization. BMC Genom 12:599
    • (2011) BMC Genom , vol.12 , pp. 599
    • Chain, F.J.J.1    Dushoff, J.2    Evans, B.J.3
  • 21
    • 67349223989 scopus 로고    scopus 로고
    • Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha)
    • COI: 1:CAS:528:DC%2BD1MXkvFersbY%3D, PID: 19225820
    • Chambers KE, McDaniell R, Raincrow JD, Deshmukh M, Stadler PF, Chiu C-H (2009) Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha). Theory Biosci 128:109–120
    • (2009) Theory Biosci , vol.128 , pp. 109-120
    • Chambers, K.E.1    McDaniell, R.2    Raincrow, J.D.3    Deshmukh, M.4    Stadler, P.F.5    Chiu, C.-H.6
  • 22
    • 34548743476 scopus 로고    scopus 로고
    • Gene conversion: mechanisms, evolution and human disease
    • COI: 1:CAS:528:DC%2BD2sXhtVCrsbzE, PID: 17846636
    • Chen JM, Cooper DN, Chuzhanova N, Férec C, Patrinos GP (2007) Gene conversion: mechanisms, evolution and human disease. Nat Rev Genet 8:762–775
    • (2007) Nat Rev Genet , vol.8 , pp. 762-775
    • Chen, J.M.1    Cooper, D.N.2    Chuzhanova, N.3    Férec, C.4    Patrinos, G.P.5
  • 23
    • 67649369319 scopus 로고    scopus 로고
    • Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria
    • COI: 1:CAS:528:DC%2BD1MXntlGju78%3D, PID: 19329651
    • Chen J-Q, Wu Y, Yang H, Bergelson J, Kreitman M, Tian D (2009) Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria. Mol Biol Evol 26:1523–1531
    • (2009) Mol Biol Evol , vol.26 , pp. 1523-1531
    • Chen, J.-Q.1    Wu, Y.2    Yang, H.3    Bergelson, J.4    Kreitman, M.5    Tian, D.6
  • 24
    • 2442707716 scopus 로고    scopus 로고
    • Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of Ray-Finned fishes
    • COI: 1:CAS:528:DC%2BD2cXksVymu7s%3D, PID: 15014147
    • Christoffels A (2004) Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of Ray-Finned fishes. Mol Biol Evol 21:1146–1151
    • (2004) Mol Biol Evol , vol.21 , pp. 1146-1151
    • Christoffels, A.1
  • 26
    • 34547611439 scopus 로고    scopus 로고
    • Increased glycolytic flux as an outcome of whole-genome duplication in yeast
    • PID: 17667951
    • Conant GC, Wolfe KH (2007) Increased glycolytic flux as an outcome of whole-genome duplication in yeast. Mol Syst Biol 3:129
    • (2007) Mol Syst Biol , vol.3 , pp. 129
    • Conant, G.C.1    Wolfe, K.H.2
  • 27
    • 56549119570 scopus 로고    scopus 로고
    • Turning a hobby into a job: how duplicated genes find new functions
    • COI: 1:CAS:528:DC%2BD1cXhtlyhtbjL, PID: 19015656
    • Conant GC, Wolfe KH (2008) Turning a hobby into a job: how duplicated genes find new functions. Nat Rev Genet 9:938–950
    • (2008) Nat Rev Genet , vol.9 , pp. 938-950
    • Conant, G.C.1    Wolfe, K.H.2
  • 28
    • 34248662670 scopus 로고    scopus 로고
    • When gene marriages don't work out: divorce by subfunctionalization
    • COI: 1:CAS:528:DC%2BD2sXlvVOnu7w%3D, PID: 17418444
    • Cusack BP, Wolfe, KH (2007) When gene marriages don't work out: divorce by subfunctionalization. Trends Genet 23:270–272
    • (2007) Trends Genet , vol.23 , pp. 270-272
    • Cusack, B.P.1    Wolfe, K.H.2
  • 29
    • 0042836783 scopus 로고    scopus 로고
    • Recent duplication of the common carp (Cyprinus caprio L.) genome as revealed by analyses of microsatellite loci
    • COI: 1:CAS:528:DC%2BD3sXntlantLo%3D, PID: 12832638
    • David L, Blum S, Feldman MW, Lavi U, Hillel J (2003) Recent duplication of the common carp (Cyprinus caprio L.) genome as revealed by analyses of microsatellite loci. Mol Biol Evol 20:1425–1434
    • (2003) Mol Biol Evol , vol.20 , pp. 1425-1434
    • David, L.1    Blum, S.2    Feldman, M.W.3    Lavi, U.4    Hillel, J.5
  • 30
    • 27844481977 scopus 로고    scopus 로고
    • Subfunctionalization of expression and peptide domains following the ancient duplication of the proopiomelanocortin gene in teleost fishes
    • PID: 16093565
    • de Souza Flavio S J, Bumaschny VF, Low MJ, Rubinstein M (2005) Subfunctionalization of expression and peptide domains following the ancient duplication of the proopiomelanocortin gene in teleost fishes. Mol Biol Evol 22:2417–2427
    • (2005) Mol Biol Evol , vol.22 , pp. 2417-2427
    • de Souza, F.S.J.1    Bumaschny, V.F.2    Low, M.J.3    Rubinstein, M.4
  • 31
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • PID: 16128622
    • Dehal P, Boore JL (2005) Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol 3:e314
    • (2005) PLoS Biol , vol.3 , pp. e314
    • Dehal, P.1    Boore, J.L.2
  • 32
    • 78650751202 scopus 로고    scopus 로고
    • Evolution of an antifreeze protein by neofunctionalization under escape from adaptive conflict
    • COI: 1:CAS:528:DC%2BC3cXhs1WisL3E, PID: 21115821
    • Deng C, Cheng C-HC, Ye H, He X, Chen L (2010) Evolution of an antifreeze protein by neofunctionalization under escape from adaptive conflict. Proc Natl Acad Sci USA 107:21593–21598
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 21593-21598
    • Deng, C.1    Cheng, C.-H.C.2    Ye, H.3    He, X.4    Chen, L.5
  • 33
    • 49649114289 scopus 로고    scopus 로고
    • Escape from adaptive conflict after duplication in an anthocyanin pathway gene
    • COI: 1:CAS:528:DC%2BD1cXps1Sntb8%3D
    • DesMarais DL, Rausher MD (2008) Escape from adaptive conflict after duplication in an anthocyanin pathway gene. Nature 454:762–765
    • (2008) Nature , vol.454 , pp. 762-765
    • DesMarais, D.L.1    Rausher, M.D.2
  • 34
    • 84872475557 scopus 로고    scopus 로고
    • Characterization of the calcium binding protein family in zebrafish
    • PID: 23341937
    • Di Donato V, Auer TO, Duroure K, Del Bene F (2013) Characterization of the calcium binding protein family in zebrafish. PLoS ONE 8:e53299
    • (2013) PLoS ONE , vol.8 , pp. e53299
    • Di Donato, V.1    Auer, T.O.2    Duroure, K.3    Del Bene, F.4
  • 36
    • 0036017378 scopus 로고    scopus 로고
    • Characterization of the gene conversions between the multigene family members of the yeast genome
    • COI: 1:CAS:528:DC%2BD38XlvVCqsbo%3D, PID: 12165839
    • Drouin G (2002) Characterization of the gene conversions between the multigene family members of the yeast genome. J Mol Evol 55:14–23
    • (2002) J Mol Evol , vol.55 , pp. 14-23
    • Drouin, G.1
  • 37
    • 0031962185 scopus 로고    scopus 로고
    • Gene conversion tracts from double-strand break repair in mammalian cells
    • COI: 1:CAS:528:DyaK1cXivFWrtw%3D%3D, PID: 9418857
    • Elliott B, Richardson C, Winderbaum J, Nickoloff JA, Jasin M (1998) Gene conversion tracts from double-strand break repair in mammalian cells. Mol Cell Biol 18:93–101
    • (1998) Mol Cell Biol , vol.18 , pp. 93-101
    • Elliott, B.1    Richardson, C.2    Winderbaum, J.3    Nickoloff, J.A.4    Jasin, M.5
  • 38
    • 65249143921 scopus 로고    scopus 로고
    • Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
    • COI: 1:CAS:528:DC%2BD1MXkvFGhu7s%3D, PID: 19325131
    • Fawcett JA, Maere S, de Peer Van, Yves (2009) Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci USA 106:5737–5742
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 5737-5742
    • Fawcett, J.A.1    Maere, S.2    de Peer, V.3    Yves4
  • 39
    • 0017742220 scopus 로고
    • Duplicate gene expression in diploid and tetraploid loaches (Cypriniformes, Cobitidae)
    • COI: 1:CAS:528:DyaE1cXmtVegsg%3D%3D, PID: 603616
    • Ferris SD, Whitt GS (1977a) Duplicate gene expression in diploid and tetraploid loaches (Cypriniformes, Cobitidae). Biochem Genet 15:1097–1112
    • (1977) Biochem Genet , vol.15 , pp. 1097-1112
    • Ferris, S.D.1    Whitt, G.S.2
  • 40
    • 0001088251 scopus 로고
    • The evolution of duplicate gene expression in the carp (Cyprinus carpio)
    • COI: 1:CAS:528:DyaE1cXjsVyq
    • Ferris SD, Whitt GS (1977b) The evolution of duplicate gene expression in the carp (Cyprinus carpio). Experientia 33:1299–1301
    • (1977) Experientia , vol.33 , pp. 1299-1301
    • Ferris, S.D.1    Whitt, G.S.2
  • 41
    • 34249733664 scopus 로고    scopus 로고
    • Vertebrate vitellogenin gene duplication in relation to the “3R hypothesis”: correlation to the pelagic egg and the oceanic radiation of teleosts
    • PID: 17245445
    • Finn RN, Kristoffersen BA (2007) Vertebrate vitellogenin gene duplication in relation to the “3R hypothesis”: correlation to the pelagic egg and the oceanic radiation of teleosts. PLoS ONE 2:e169
    • (2007) PLoS ONE , vol.2 , pp. e169
    • Finn, R.N.1    Kristoffersen, B.A.2
  • 42
    • 0036321923 scopus 로고    scopus 로고
    • In vivo oocyte hydration in Atlantic halibut (Hippoglossus hippoglossus); proteolytic liberation of free amino acids, and ion transport, are driving forces for osmotic water influx
    • COI: 1:CAS:528:DC%2BD38XitVSgtLs%3D, PID: 11821487
    • Finn RN, Ostby GC, Norberg B, Fyhn HJ (2002) In vivo oocyte hydration in Atlantic halibut (Hippoglossus hippoglossus); proteolytic liberation of free amino acids, and ion transport, are driving forces for osmotic water influx. J Exp Biol 205:211–224
    • (2002) J Exp Biol , vol.205 , pp. 211-224
    • Finn, R.N.1    Ostby, G.C.2    Norberg, B.3    Fyhn, H.J.4
  • 43
    • 78650195487 scopus 로고    scopus 로고
    • Parallel visual cycles in the zebrafish retina
    • PID: 20488254
    • Fleisch VC, Neuhauss SC (2010) Parallel visual cycles in the zebrafish retina. Prog Retin Eye Res 29:476–486
    • (2010) Prog Retin Eye Res , vol.29 , pp. 476-486
    • Fleisch, V.C.1    Neuhauss, S.C.2
  • 44
    • 51149114011 scopus 로고    scopus 로고
    • Subfunctionalization of a retinoid-binding protein provides evidence for two parallel visual cycles in the cone-dominant zebrafish retina
    • COI: 1:CAS:528:DC%2BD1cXhtVaktLjP, PID: 18701683
    • Fleisch VC, Schonthaler HB, von Lintig J, Stephan Neuhauss CF (2008) Subfunctionalization of a retinoid-binding protein provides evidence for two parallel visual cycles in the cone-dominant zebrafish retina. J Neurosci 28:8208–8216
    • (2008) J Neurosci , vol.28 , pp. 8208-8216
    • Fleisch, V.C.1    Schonthaler, H.B.2    von Lintig, J.3    Stephan Neuhauss, C.F.4
  • 45
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • COI: 1:CAS:528:DyaK1MXisV2rs7o%3D, PID: 10101175
    • Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531–1545
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 46
    • 57149114784 scopus 로고    scopus 로고
    • The evolutionary position of subfunctionalization, downgraded
    • COI: 1:CAS:528:DC%2BD1cXhtVOgtLbI, PID: 18756075
    • Freeling M (2008) The evolutionary position of subfunctionalization, downgraded. Genome Dyn 4:25–40
    • (2008) Genome Dyn , vol.4 , pp. 25-40
    • Freeling, M.1
  • 47
    • 67651039811 scopus 로고    scopus 로고
    • Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition
    • COI: 1:CAS:528:DC%2BD1MXntFGlsLs%3D, PID: 19575588
    • Freeling M (2009) Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annu Rev Plant Biol 60:433–453
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 433-453
    • Freeling, M.1
  • 48
    • 33745610025 scopus 로고    scopus 로고
    • Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
    • COI: 1:CAS:528:DC%2BD28XmvVCgtr4%3D, PID: 16818725
    • Freeling M, Thomas BC (2006) Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res 16:805–814
    • (2006) Genome Res , vol.16 , pp. 805-814
    • Freeling, M.1    Thomas, B.C.2
  • 49
    • 84944865905 scopus 로고    scopus 로고
    • Froese R, Pauly D (2013), version (12/2013)
    • Froese R, Pauly D (2013). FishBase. www.fishbase.org, version (12/2013)
    • FishBase
  • 53
    • 35348910193 scopus 로고    scopus 로고
    • Positive selection and gene conversion in SPP120, a fertilization-related gene, during the East African cichlid fish radiation
    • COI: 1:CAS:528:DC%2BD2sXht1ejsLnL, PID: 17675335
    • Gerrard DT, Meyer A (2007) Positive selection and gene conversion in SPP120, a fertilization-related gene, during the East African cichlid fish radiation. Mol Biol Evol 24:2286–2297
    • (2007) Mol Biol Evol , vol.24 , pp. 2286-2297
    • Gerrard, D.T.1    Meyer, A.2
  • 54
    • 77951526133 scopus 로고    scopus 로고
    • Phylogenetic analysis of the vertebrate excitatory/neutral amino acid transporter (SLC1/EAAT) family reveals lineage specific subfamilies
    • PID: 20429920
    • Gesemann M, Lesslauer A, Maurer CM, Schönthaler HB, Stephan Neuhauss CF (2010) Phylogenetic analysis of the vertebrate excitatory/neutral amino acid transporter (SLC1/EAAT) family reveals lineage specific subfamilies. BMC Evol Biol 10:117
    • (2010) BMC Evol Biol , vol.10 , pp. 117
    • Gesemann, M.1    Lesslauer, A.2    Maurer, C.M.3    Schönthaler, H.B.4    Stephan Neuhauss, C.F.5
  • 55
    • 77953212314 scopus 로고    scopus 로고
    • The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution
    • PID: 20485561
    • Gout J-F, Kahn D, Duret L (2010) The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution. PLoS Genet 6:e1000944
    • (2010) PLoS Genet , vol.6 , pp. e1000944
    • Gout, J.-F.1    Kahn, D.2    Duret, L.3
  • 57
    • 84970931182 scopus 로고    scopus 로고
    • Hox genes of the Japanese eel Anguilla japonica and Hox cluster evolution in teleosts. J Exp Zool 9999B
    • Guo B, Gan X, He S (2009) Hox genes of the Japanese eel Anguilla japonica and Hox cluster evolution in teleosts. J Exp Zool 9999B, n/a
    • (2009) n/a
    • Guo, B.1    Gan, X.2    He, S.3
  • 58
    • 84866916321 scopus 로고    scopus 로고
    • Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication
    • COI: 1:CAS:528:DC%2BC38XhsVehtb3P, PID: 22490820
    • Guo B, Zou M, Wagner A (2012) Pervasive indels and their evolutionary dynamics after the fish-specific genome duplication. Mol Biol Evol 29:3005–3022
    • (2012) Mol Biol Evol , vol.29 , pp. 3005-3022
    • Guo, B.1    Zou, M.2    Wagner, A.3
  • 59
    • 38049133600 scopus 로고    scopus 로고
    • All duplicates are not equal: the difference between small-scale and genome duplication
    • PID: 17916239
    • Hakes L, Pinney JW, Lovell SC, Oliver SG, Robertson DL (2007) All duplicates are not equal: the difference between small-scale and genome duplication. Genome Biol 8:R209
    • (2007) Genome Biol , vol.8 , pp. R209
    • Hakes, L.1    Pinney, J.W.2    Lovell, S.C.3    Oliver, S.G.4    Robertson, D.L.5
  • 60
    • 0000789713 scopus 로고
    • The chromosomes of salmonid fishes
    • Hartley S (1986) The chromosomes of salmonid fishes. Biol Rev 62:197–214
    • (1986) Biol Rev , vol.62 , pp. 197-214
    • Hartley, S.1
  • 61
    • 84875287438 scopus 로고    scopus 로고
    • Phylogeny and expression divergence of metabotropic glutamate receptor genes in the brain of zebrafish (Danio rerio)
    • COI: 1:CAS:528:DC%2BC3sXksVKrsL8%3D, PID: 23047810
    • Haug MF, Gesemann M, Mueller T, Stephan Neuhauss CF (2013) Phylogeny and expression divergence of metabotropic glutamate receptor genes in the brain of zebrafish (Danio rerio). J Comp Neurol 521:1533–1560
    • (2013) J Comp Neurol , vol.521 , pp. 1533-1560
    • Haug, M.F.1    Gesemann, M.2    Mueller, T.3    Stephan Neuhauss, C.F.4
  • 63
    • 34548732734 scopus 로고    scopus 로고
    • Phylogenomic analyses of KCNA gene clusters in vertebrates: why do gene clusters stay intact?
    • PID: 17697377
    • Hoegg S, Meyer A (2007) Phylogenomic analyses of KCNA gene clusters in vertebrates: why do gene clusters stay intact? BMC Evol Biol 7:139
    • (2007) BMC Evol Biol , vol.7 , pp. 139
    • Hoegg, S.1    Meyer, A.2
  • 64
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: evo devo and the genetics of adaptation
    • PID: 17492956
    • Hoekstra HE, Coyne JA (2007) The locus of evolution: evo devo and the genetics of adaptation. Evolution 61:995–1016
    • (2007) Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 67
    • 70350741353 scopus 로고    scopus 로고
    • Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention
    • COI: 1:CAS:528:DC%2BD1MXhsVSmtLnL, PID: 19704032
    • Hufton AL, Mathia S, Braun H, Georgi U, Lehrach H, Vingron M, Poustka AJ, Panopoulou G (2009) Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. Genome Res 19:2036–2051
    • (2009) Genome Res , vol.19 , pp. 2036-2051
    • Hufton, A.L.1    Mathia, S.2    Braun, H.3    Georgi, U.4    Lehrach, H.5    Vingron, M.6    Poustka, A.J.7    Panopoulou, G.8
  • 68
    • 0028342845 scopus 로고
    • The evolution of functionally novel proteins after gene duplication
    • COI: 1:CAS:528:DyaK2MXmsFSktw%3D%3D, PID: 8029240
    • Hughes AL (1994) The evolution of functionally novel proteins after gene duplication. Proc Biol Sci 256:119–124
    • (1994) Proc Biol Sci , vol.256 , pp. 119-124
    • Hughes, A.L.1
  • 69
    • 70349997549 scopus 로고    scopus 로고
    • Population genetic models of duplicated genes
    • COI: 1:CAS:528:DC%2BD1MXptVGjsbo%3D, PID: 19266289
    • Innan H (2009) Population genetic models of duplicated genes. Genetica 137:19–37
    • (2009) Genetica , vol.137 , pp. 19-37
    • Innan, H.1
  • 70
    • 75549087305 scopus 로고    scopus 로고
    • The evolution of gene duplications: classifying and distinguishing between models
    • Innan H, Kondrashov F (2010) The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet 11:4
    • (2010) Nat Rev Genet , vol.11 , pp. 4
    • Innan, H.1    Kondrashov, F.2
  • 73
    • 38849191693 scopus 로고    scopus 로고
    • Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions
    • PID: 18005425
    • Jiang H, Blouin C (2007) Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions. BMC Bioinformatics 8:444
    • (2007) BMC Bioinformatics , vol.8 , pp. 444
    • Jiang, H.1    Blouin, C.2
  • 74
    • 70349527647 scopus 로고    scopus 로고
    • Implications of duplicated cis-regulatory elements in the evolution of metazoans: the DDI model or how simplicity begets novelty
    • COI: 1:CAS:528:DC%2BD1MXhtFOhtrfF, PID: 19651705
    • Jimenez-Delgado S, Pascual-Anaya J, Garcia-Fernandez J (2009) Implications of duplicated cis-regulatory elements in the evolution of metazoans: the DDI model or how simplicity begets novelty. Brief Funct Genomic Proteomic 8:266–275
    • (2009) Brief Funct Genomic Proteomic , vol.8 , pp. 266-275
    • Jimenez-Delgado, S.1    Pascual-Anaya, J.2    Garcia-Fernandez, J.3
  • 75
    • 0023390513 scopus 로고
    • Linkage relationships reflecting ancestral tetraploidy in salmonid fish
    • COI: 1:STN:280:DyaL2szgsFGhtA%3D%3D, PID: 3623080
    • Johnson KR, Wright JE Jr, May B (1987) Linkage relationships reflecting ancestral tetraploidy in salmonid fish. Genetics 116:579–591
    • (1987) Genetics , vol.116 , pp. 579-591
    • Johnson, K.R.1    Wright, J.E.2    May, B.3
  • 78
    • 68149176813 scopus 로고    scopus 로고
    • Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates
    • COI: 1:CAS:528:DC%2BD1MXpvFOntLY%3D, PID: 19439512
    • Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA (2009) Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. Genome Res 19:1404–1418
    • (2009) Genome Res , vol.19 , pp. 1404-1418
    • Kassahn, K.S.1    Dang, V.T.2    Wilkins, S.J.3    Perkins, A.C.4    Ragan, M.A.5
  • 79
    • 84886288251 scopus 로고    scopus 로고
    • Phylogenetic analysis and expression of zebrafish transient receptor potential melastatin family genes
    • COI: 1:CAS:528:DC%2BC3sXhs1yksrzI, PID: 23908157
    • Kastenhuber E, Gesemann M, Mickoleit M, Stephan Neuhauss CF (2013) Phylogenetic analysis and expression of zebrafish transient receptor potential melastatin family genes. Dev Dyn 242:1236–1249
    • (2013) Dev Dyn , vol.242 , pp. 1236-1249
    • Kastenhuber, E.1    Gesemann, M.2    Mickoleit, M.3    Stephan Neuhauss, C.F.4
  • 80
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • COI: 1:CAS:528:DC%2BD2cXivVGmtLY%3D, PID: 15004568
    • Kellis M, Birren BW, Lander ES (2004) Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428:617–624
    • (2004) Nature , vol.428 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 82
    • 57749184792 scopus 로고    scopus 로고
    • Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?
    • COI: 1:CAS:528:DC%2BD1MXlsVKitA%3D%3D, PID: 18842688
    • Kuraku S, Meyer A, Kuratani S (2009) Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after? Mol Biol Evol 26:47–59
    • (2009) Mol Biol Evol , vol.26 , pp. 47-59
    • Kuraku, S.1    Meyer, A.2    Kuratani, S.3
  • 83
    • 25144498370 scopus 로고    scopus 로고
    • Derivation of major yolk proteins from parental vitellogenins and alternative processing during oocyte maturation in Fundulus heteroclitus
    • La Fleur GJ Jr, Raldua D, Fabra M, Carnevali O, Denslow N, Wallace RA, Cerda J (2005) Derivation of major yolk proteins from parental vitellogenins and alternative processing during oocyte maturation in Fundulus heteroclitus. Biol Reprod 73:815–824
    • (2005) Biol Reprod , vol.73 , pp. 815-824
    • La Fleur, G.J.1    Raldua, D.2    Fabra, M.3    Carnevali, O.4    Denslow, N.5    Wallace, R.A.6    Cerda, J.7
  • 84
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • COI: 1:CAS:528:DC%2BD3cXms1KhsA%3D%3D, PID: 10629003
    • Lynch M, Force A (2000) The probability of duplicate gene preservation by subfunctionalization. Genetics 154:459–473
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 85
    • 51549097146 scopus 로고    scopus 로고
    • Resurrecting the role of transcription factor change in developmental evolution
    • COI: 1:CAS:528:DC%2BD1cXht1Sqt7bI, PID: 18564379
    • Lynch VJ, Wagner GP (2008) Resurrecting the role of transcription factor change in developmental evolution. Evolution 62:2131–2154
    • (2008) Evolution , vol.62 , pp. 2131-2154
    • Lynch, V.J.1    Wagner, G.P.2
  • 86
    • 4344699457 scopus 로고    scopus 로고
    • ‘Why polyploidy is rarer in animals than in plants’: myths and mechanisms
    • Mable B (2004) ‘Why polyploidy is rarer in animals than in plants’: myths and mechanisms. Biol J Linn Soc 82:453–466
    • (2004) Biol J Linn Soc , vol.82 , pp. 453-466
    • Mable, B.1
  • 87
    • 38349104798 scopus 로고    scopus 로고
    • Evolution of follistatin in teleosts revealed through phylogenetic, genomic and expression analyses
    • COI: 1:CAS:528:DC%2BD1cXmt1ynsw%3D%3D, PID: 18074148
    • Macqueen DJ, Johnston IA (2008) Evolution of follistatin in teleosts revealed through phylogenetic, genomic and expression analyses. Dev Genes Evol 218:1–14
    • (2008) Dev Genes Evol , vol.218 , pp. 1-14
    • Macqueen, D.J.1    Johnston, I.A.2
  • 88
    • 84900525383 scopus 로고    scopus 로고
    • A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification
    • PID: 24452024
    • Macqueen DJ, Johnston IA (2014) A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification. Proc Biol Sci 281:20132881
    • (2014) Proc Biol Sci , vol.281 , pp. 20132881
    • Macqueen, D.J.1    Johnston, I.A.2
  • 90
    • 77749261529 scopus 로고    scopus 로고
    • The power of the methods for detecting interlocus gene conversion
    • COI: 1:CAS:528:DC%2BC3cXhsFOnur3O, PID: 19948889
    • Mansai SP, Innan H (2010) The power of the methods for detecting interlocus gene conversion. Genetics 184:517–527
    • (2010) Genetics , vol.184 , pp. 517-527
    • Mansai, S.P.1    Innan, H.2
  • 91
    • 0033199056 scopus 로고    scopus 로고
    • Two forms of vitellogenin, yielding two distinct lipovitellins, play different roles during oocyte maturation and early development of barfin flounder, Verasper moseri, a marine teleost that spawns pelagic eggs
    • COI: 1:CAS:528:DyaK1MXlt1Wrsrc%3D, PID: 10452844
    • Matsubara T, Ohkubo N, Andoh T, Sullivan CV, Hara A (1999) Two forms of vitellogenin, yielding two distinct lipovitellins, play different roles during oocyte maturation and early development of barfin flounder, Verasper moseri, a marine teleost that spawns pelagic eggs. Dev Biol 213:18–32
    • (1999) Dev Biol , vol.213 , pp. 18-32
    • Matsubara, T.1    Ohkubo, N.2    Andoh, T.3    Sullivan, C.V.4    Hara, A.5
  • 92
    • 0034917298 scopus 로고    scopus 로고
    • Consequences of Hox gene duplication in the vertebrates: an investigation of the zebrafish Hox paralogue group 1 genes
    • COI: 1:CAS:528:DC%2BD3MXlsVCqt7c%3D, PID: 11493564
    • McClintock JM, Carlson R, Mann DM, Prince VE (2001) Consequences of Hox gene duplication in the vertebrates: an investigation of the zebrafish Hox paralogue group 1 genes. Development 128:2471–2484
    • (2001) Development , vol.128 , pp. 2471-2484
    • McClintock, J.M.1    Carlson, R.2    Mann, D.M.3    Prince, V.E.4
  • 94
    • 2442671523 scopus 로고    scopus 로고
    • Evolution of sarcomeric myosin heavy chain genes: evidence from fish
    • COI: 1:CAS:528:DC%2BD2cXksVymuro%3D, PID: 15014174
    • McGuigan K, Phillips PC, Postlethwait JH (2004) Evolution of sarcomeric myosin heavy chain genes: evidence from fish. Mol Biol Evol 21:1042–1056
    • (2004) Mol Biol Evol , vol.21 , pp. 1042-1056
    • McGuigan, K.1    Phillips, P.C.2    Postlethwait, J.H.3
  • 95
    • 0030122155 scopus 로고    scopus 로고
    • Evidence for four Hox clusters in the killifish Fundulus heteroclitus (teleostei)
    • COI: 1:CAS:528:DyaK28XjtVCkuro%3D, PID: 8728389
    • Misof BY, Wagner GP (1996) Evidence for four Hox clusters in the killifish Fundulus heteroclitus (teleostei). Mol Phylogenet Evol 5:309–322
    • (1996) Mol Phylogenet Evol , vol.5 , pp. 309-322
    • Misof, B.Y.1    Wagner, G.P.2
  • 96
    • 27844526579 scopus 로고    scopus 로고
    • Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana
    • COI: 1:CAS:528:DC%2BD2MXht1KgtLnE, PID: 16120808
    • Mondragon-Palomino M, Gaut BS (2005) Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana. Mol Biol Evol 22:2444–2456
    • (2005) Mol Biol Evol , vol.22 , pp. 2444-2456
    • Mondragon-Palomino, M.1    Gaut, B.S.2
  • 97
    • 2442697672 scopus 로고    scopus 로고
    • A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping
    • COI: 1:CAS:528:DC%2BD2cXjvFyktbk%3D, PID: 15078856
    • Naruse K, Tanaka M, Mita K, Shima A, Postlethwait J, Mitani H (2004) A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping. Genome Res 14:820–828
    • (2004) Genome Res , vol.14 , pp. 820-828
    • Naruse, K.1    Tanaka, M.2    Mita, K.3    Shima, A.4    Postlethwait, J.5    Mitani, H.6
  • 99
    • 16744361912 scopus 로고
    • Primary structure, developmentally regulated expression and potential duplication of the zebrafish homeobox gene ZF-21
    • COI: 1:STN:280:DyaL1M%2Fhs1KitQ%3D%3D, PID: 2902580
    • Njolstad PR, Molven A, Hordvik I, Apold J, Fjose A (1988) Primary structure, developmentally regulated expression and potential duplication of the zebrafish homeobox gene ZF-21. Nucleic Acids Res 16:9097–9111
    • (1988) Nucleic Acids Res , vol.16 , pp. 9097-9111
    • Njolstad, P.R.1    Molven, A.2    Hordvik, I.3    Apold, J.4    Fjose, A.5
  • 100
    • 1542316918 scopus 로고    scopus 로고
    • Gene conversion and the evolution of protocadherin gene cluster diversity
    • COI: 1:CAS:528:DC%2BD2cXisFWiu7k%3D, PID: 14993203
    • Noonan JP, Grimwood J, Schmutz J, Dickson M, Myers RM (2004) Gene conversion and the evolution of protocadherin gene cluster diversity. Genome Res 14:354–366
    • (2004) Genome Res , vol.14 , pp. 354-366
    • Noonan, J.P.1    Grimwood, J.2    Schmutz, J.3    Dickson, M.4    Myers, R.M.5
  • 102
    • 0343698500 scopus 로고
    • The enormous diversity in genome sizes of fish as a reflection of nature’s extensive experiments with gene duplication
    • Ohno S (1970b) The enormous diversity in genome sizes of fish as a reflection of nature’s extensive experiments with gene duplication. Trans Am Fish Soc 99:120–130
    • (1970) Trans Am Fish Soc , vol.99 , pp. 120-130
    • Ohno, S.1
  • 103
    • 0002850865 scopus 로고
    • Diploid-tetraploid relationship among old-world members of the fish family Cyprinidae
    • Ohno S, Muramoto J, Lawrence C, Atkin NB (1967) Diploid-tetraploid relationship among old-world members of the fish family Cyprinidae. Chromosoma 23:1–9
    • (1967) Chromosoma , vol.23 , pp. 1-9
    • Ohno, S.1    Muramoto, J.2    Lawrence, C.3    Atkin, N.B.4
  • 105
    • 0034500239 scopus 로고    scopus 로고
    • Polyploid incidence and evolution
    • COI: 1:CAS:528:DC%2BD3MXlvFOjsg%3D%3D, PID: 11092833
    • Otto SP, Whitton J (2000) Polyploid incidence and evolution. Annu Rev Genet 34:401–437
    • (2000) Annu Rev Genet , vol.34 , pp. 401-437
    • Otto, S.P.1    Whitton, J.2
  • 106
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • COI: 1:CAS:528:DC%2BD3sXlt1CktLg%3D, PID: 12853957
    • Papp B, Pal C, Hurst LD (2003) Dosage sensitivity and the evolution of gene families in yeast. Nature 424:194–197
    • (2003) Nature , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 107
    • 0035096956 scopus 로고    scopus 로고
    • Chromosome evolution in the Salmonidae (Pisces): an update
    • COI: 1:STN:280:DC%2BD3MzotlWhtg%3D%3D, PID: 11325050
    • Phillips R, Rab P (2001) Chromosome evolution in the Salmonidae (Pisces): an update. Biol Rev Camb Philos Soc 76:1–25
    • (2001) Biol Rev Camb Philos Soc , vol.76 , pp. 1-25
    • Phillips, R.1    Rab, P.2
  • 108
    • 69849109309 scopus 로고    scopus 로고
    • Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)
    • PID: 19689812
    • Phillips RB, Keatley KA, Morasch MR, Ventura AB, Lubieniecki KP, Koop BF, Danzmann RG, Davidson WS (2009) Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss). BMC Genet 10:46
    • (2009) BMC Genet , vol.10 , pp. 46
    • Phillips, R.B.1    Keatley, K.A.2    Morasch, M.R.3    Ventura, A.B.4    Lubieniecki, K.P.5    Koop, B.F.6    Danzmann, R.G.7    Davidson, W.S.8
  • 110
    • 4444340536 scopus 로고    scopus 로고
    • Subfunction partitioning, the teleost radiation and the annotation of the human genome
    • COI: 1:CAS:528:DC%2BD2cXnsFGntr8%3D, PID: 15363902
    • Postlethwait J, Amores A, Cresko W, Singer A, Yan Y-L (2004) Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends Genet 20:481–490
    • (2004) Trends Genet , vol.20 , pp. 481-490
    • Postlethwait, J.1    Amores, A.2    Cresko, W.3    Singer, A.4    Yan, Y.-L.5
  • 111
    • 0031887992 scopus 로고    scopus 로고
    • Zebrafish hox genes: genomic organization and modified colinear expression patterns in the trunk
    • COI: 1:CAS:528:DyaK1cXhs1Oqtrw%3D, PID: 9425136
    • Prince Y, Joly L, Ekker M, Ho R (1998) Zebrafish hox genes: genomic organization and modified colinear expression patterns in the trunk. Development 125:407–420
    • (1998) Development , vol.125 , pp. 407-420
    • Prince, Y.1    Joly, L.2    Ekker, M.3    Ho, R.4
  • 112
    • 3142552575 scopus 로고    scopus 로고
    • The duplication of the hox gene clusters in teleost fishes
    • Prohaska SJ, Stadler PF (2004) The duplication of the hox gene clusters in teleost fishes. Theory Biosci 23:89–110
    • (2004) Theory Biosci , vol.23 , pp. 89-110
    • Prohaska, S.J.1    Stadler, P.F.2
  • 114
    • 79951476592 scopus 로고    scopus 로고
    • Cone arrestin confers cone vision of high temporal resolution in zebrafish larvae
    • PID: 21299656
    • Renninger SL, Gesemann M, Stephan Neuhauss CF (2011) Cone arrestin confers cone vision of high temporal resolution in zebrafish larvae. Eur J Neurosci 33:658–667
    • (2011) Eur J Neurosci , vol.33 , pp. 658-667
    • Renninger, S.L.1    Gesemann, M.2    Stephan Neuhauss, C.F.3
  • 116
    • 70349201094 scopus 로고    scopus 로고
    • Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes
    • PID: 19664233
    • Santini F, Harmon LJ, Carnevale G, Alfaro ME (2009) Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes. BMC Evol Biol 9:194
    • (2009) BMC Evol Biol , vol.9 , pp. 194
    • Santini, F.1    Harmon, L.J.2    Carnevale, G.3    Alfaro, M.E.4
  • 117
    • 67649807765 scopus 로고    scopus 로고
    • Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication
    • PID: 19500364
    • Sato Y, Hashiguchi Y, Nishida M (2009) Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evol Biol 9:127
    • (2009) BMC Evol Biol , vol.9 , pp. 127
    • Sato, Y.1    Hashiguchi, Y.2    Nishida, M.3
  • 118
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • COI: 1:CAS:528:DC%2BD28XitlKgu7w%3D, PID: 16541074
    • Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH (2006) Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440:341–345
    • (2006) Nature , vol.440 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 119
    • 36949031286 scopus 로고    scopus 로고
    • Yeast genome evolution–the origin of the species
    • COI: 1:CAS:528:DC%2BD2sXhsVCntbjM, PID: 17621376
    • Scannell DR, Butler G, Wolfe KH (2007) Yeast genome evolution–the origin of the species. Yeast 24:929–942
    • (2007) Yeast , vol.24 , pp. 929-942
    • Scannell, D.R.1    Butler, G.2    Wolfe, K.H.3
  • 121
    • 84859917501 scopus 로고    scopus 로고
    • Ancient whole genome duplications, novelty and diversification: the WGD radiation lag-time model
    • PID: 22480429
    • Schranz ME, Mohammadin S, Edger PP (2012) Ancient whole genome duplications, novelty and diversification: the WGD radiation lag-time model. Curr Opin Plant Biol 15:147–153
    • (2012) Curr Opin Plant Biol , vol.15 , pp. 147-153
    • Schranz, M.E.1    Mohammadin, S.2    Edger, P.P.3
  • 122
    • 46149123448 scopus 로고    scopus 로고
    • Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis
    • COI: 1:CAS:528:DC%2BD1cXnvVKkurw%3D, PID: 18541921
    • Semon M, Wolfe KH (2008) Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis. Proc Natl Acad Sci USA 105:8333–8338
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 8333-8338
    • Semon, M.1    Wolfe, K.H.2
  • 123
    • 33847653643 scopus 로고    scopus 로고
    • Rearrangement rate following the whole-genome duplication in teleosts
    • PID: 17218642
    • Sémon M, Wolfe KH (2007) Rearrangement rate following the whole-genome duplication in teleosts. Mol Biol Evol 24:860–867
    • (2007) Mol Biol Evol , vol.24 , pp. 860-867
    • Sémon, M.1    Wolfe, K.H.2
  • 124
    • 0032953158 scopus 로고    scopus 로고
    • Gene duplication and gene conversion in the Caenorhabditis elegans genome
    • COI: 1:CAS:528:DyaK1MXisFGis70%3D, PID: 10198121
    • Semple C, Wolfe KH (1999) Gene duplication and gene conversion in the Caenorhabditis elegans genome. J Mol Evol 48:555–564
    • (1999) J Mol Evol , vol.48 , pp. 555-564
    • Semple, C.1    Wolfe, K.H.2
  • 125
    • 0032879798 scopus 로고    scopus 로고
    • Yeast genome evolution in the post-genome era
    • COI: 1:CAS:528:DyaK1MXntlCku7Y%3D, PID: 10508730
    • Seoighe C, Wolfe KH (1999) Yeast genome evolution in the post-genome era. Curr Opin Microbiol 2:548–554
    • (1999) Curr Opin Microbiol , vol.2 , pp. 548-554
    • Seoighe, C.1    Wolfe, K.H.2
  • 126
    • 84866267075 scopus 로고    scopus 로고
    • Escape from adaptive conflict follows from weak functional trade-offs and mutational robustness
    • COI: 1:CAS:528:DC%2BC38XhsVelsrnM, PID: 22927372
    • Sikosek T, Chan HS, Bornberg-Bauer E (2012) Escape from adaptive conflict follows from weak functional trade-offs and mutational robustness. Proc Natl Acad Sci USA 109:14888–14893
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 14888-14893
    • Sikosek, T.1    Chan, H.S.2    Bornberg-Bauer, E.3
  • 127
    • 79952762847 scopus 로고    scopus 로고
    • Understanding angiosperm diversification using small and large phylogenetic trees
    • PID: 21613134
    • Smith SA, Beaulieu JM, Stamatakis A, Donoghue MJ (2011) Understanding angiosperm diversification using small and large phylogenetic trees. Am J Bot 98:404–414
    • (2011) Am J Bot , vol.98 , pp. 404-414
    • Smith, S.A.1    Beaulieu, J.M.2    Stamatakis, A.3    Donoghue, M.J.4
  • 129
    • 33750963793 scopus 로고    scopus 로고
    • Selection for more of the same product as a force to enhance concerted evolution of duplicated genes
    • COI: 1:CAS:528:DC%2BD28Xht1eku7bK, PID: 17045359
    • Sugino RP, Innan H (2006) Selection for more of the same product as a force to enhance concerted evolution of duplicated genes. Trends Genet 22:642–644
    • (2006) Trends Genet , vol.22 , pp. 642-644
    • Sugino, R.P.1    Innan, H.2
  • 130
    • 42549120705 scopus 로고    scopus 로고
    • Synteny and collinearity in plant genomes
    • COI: 1:CAS:528:DC%2BD1cXkvFGktr8%3D, PID: 18436778
    • Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH (2008) Synteny and collinearity in plant genomes. Science 320:486–488
    • (2008) Science , vol.320 , pp. 486-488
    • Tang, H.1    Bowers, J.E.2    Wang, X.3    Ming, R.4    Alam, M.5    Paterson, A.H.6
  • 131
    • 0037351989 scopus 로고    scopus 로고
    • Genome duplication, a trait shared by 22,000 species of ray-finned fish
    • COI: 1:CAS:528:DC%2BD3sXit1Wgtrc%3D, PID: 12618368
    • Taylor JS (2003) Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res 13:382–390
    • (2003) Genome Res , vol.13 , pp. 382-390
    • Taylor, J.S.1
  • 132
    • 0035968908 scopus 로고    scopus 로고
    • Comparative genomics provides evidence for an ancient genome duplication event in fish
    • COI: 1:CAS:528:DC%2BD38XitFCnsw%3D%3D, PID: 11604130
    • Taylor JS, Van de Peer Y, Braasch I, Meyer A (2001) Comparative genomics provides evidence for an ancient genome duplication event in fish. Philos Trans R Soc Lond B Biol Sci 356:1661–1679
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.356 , pp. 1661-1679
    • Taylor, J.S.1    Van de Peer, Y.2    Braasch, I.3    Meyer, A.4
  • 133
    • 44449170092 scopus 로고    scopus 로고
    • Neofunctionalization of duplicated genes under the pressure of gene conversion
    • COI: 1:CAS:528:DC%2BD1cXltFahtLw%3D, PID: 18245342
    • Teshima KM, Innan H (2008) Neofunctionalization of duplicated genes under the pressure of gene conversion. Genetics 178:1385–1398
    • (2008) Genetics , vol.178 , pp. 1385-1398
    • Teshima, K.M.1    Innan, H.2
  • 135
    • 0015502285 scopus 로고
    • Tetraploid origin of the karyotype of catostomid fishes
    • COI: 1:STN:280:DyaE38%2FpvValtQ%3D%3D, PID: 5009763
    • Uyeno T, Smith GR (1972) Tetraploid origin of the karyotype of catostomid fishes. Science 175:644–646
    • (1972) Science , vol.175 , pp. 644-646
    • Uyeno, T.1    Smith, G.R.2
  • 136
    • 70349325524 scopus 로고    scopus 로고
    • The evolutionary significance of ancient genome duplications
    • PID: 19652647
    • Van de Peer Y, Maere S, Meyer A (2009) The evolutionary significance of ancient genome duplications. Nat Rev Genet 10:725–732
    • (2009) Nat Rev Genet , vol.10 , pp. 725-732
    • Van de Peer, Y.1    Maere, S.2    Meyer, A.3
  • 137
    • 1242274629 scopus 로고    scopus 로고
    • Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates
    • COI: 1:CAS:528:DC%2BD2cXhsFaqt7o%3D
    • Vandepoele K, de Vos W, Taylor JS, Meyer A, de Peer Van, Yves (2004) Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc Natl Acad Sci USA 101:1638–1643
    • (2004) Proc Natl Acad Sci v , vol.101 , pp. 1638-1643
    • Vandepoele, K.1    de Vos, W.2    Taylor, J.S.3    Meyer, A.4    de Peer, V.5    Yves6
  • 138
    • 15544377813 scopus 로고    scopus 로고
    • Genome evolution and biodiversity in teleost fish
    • COI: 1:CAS:528:DC%2BD2MXhsFOqtbw%3D
    • Volff J-N (2005) Genome evolution and biodiversity in teleost fish. Heredity (Edinb) 94:280–294
    • (2005) Heredity (Edinb) , vol.94 , pp. 280-294
    • Volff, J.-N.1
  • 139
    • 84888042569 scopus 로고    scopus 로고
    • Phylogeny and expression of canonical transient receptor potential (TRPC) genes in developing zebrafish
    • von Niederhäusern V, Kastenhuber E, Stäuble A, Gesemann M, Stephan Neuhauss CF (2013) Phylogeny and expression of canonical transient receptor potential (TRPC) genes in developing zebrafish. Dev Dyn 242:1427–1441
    • (2013) Dev Dyn , vol.242 , pp. 1427-1441
    • von Niederhäusern, V.1    Kastenhuber, E.2    Stäuble, A.3    Gesemann, M.4    Stephan Neuhauss, C.F.5
  • 140
    • 84862811678 scopus 로고    scopus 로고
    • Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio)
    • COI: 1:CAS:528:DC%2BC38Xot12rsbY%3D
    • Wang J-T, Li J-T, Zhang X-F, Sun X-W (2012) Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio). BMC Genom 13:96
    • (2012) BMC Genom , vol.13 , pp. 96
    • Wang, J.-T.1    Li, J.-T.2    Zhang, X.-F.3    Sun, X.-W.4
  • 141
    • 84867540876 scopus 로고    scopus 로고
    • Complex patterns of divergence among green-sensitive (RH2a) African cichlid opsins revealed by Clade model analyses
    • PID: 23078361
    • Weadick CJ, Chang BS (2012) Complex patterns of divergence among green-sensitive (RH2a) African cichlid opsins revealed by Clade model analyses. BMC Evol Biol 12:206
    • (2012) BMC Evol Biol , vol.12 , pp. 206
    • Weadick, C.J.1    Chang, B.S.2
  • 142
    • 77049119298 scopus 로고    scopus 로고
    • The opsin repertoire of Jenynsia onca: a new perspective on gene duplication and divergence in livebearers
    • PID: 19656397
    • Windsor DJ, Owens GL (2009) The opsin repertoire of Jenynsia onca: a new perspective on gene duplication and divergence in livebearers. BMC Res Notes 2:159
    • (2009) BMC Res Notes , vol.2 , pp. 159
    • Windsor, D.J.1    Owens, G.L.2
  • 144
    • 83855163414 scopus 로고    scopus 로고
    • Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence
    • COI: 1:CAS:528:DC%2BC3MXhsFKksr%2FK
    • Wittkopp PJ, Kalay G (2012) Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence. Nat Rev Genet 13:59–69
    • (2012) Nat Rev Genet , vol.13 , pp. 59-69
    • Wittkopp, P.J.1    Kalay, G.2
  • 145
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • COI: 1:STN:280:DyaK2szjs1Wjsw%3D%3D, PID: 9192896
    • Wolfe KH, Shields DC (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387:708–713
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 147
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • COI: 1:CAS:528:DC%2BD2sXhslOgt7w%3D, PID: 17304246
    • Wray GA (2007) The evolutionary significance of cis-regulatory mutations. Nat Rev Genet 8:206–216
    • (2007) Nat Rev Genet , vol.8 , pp. 206-216
    • Wray, G.A.1
  • 148
    • 34247120219 scopus 로고    scopus 로고
    • Sequencing and comparative analysis of fugu protocadherin clusters reveal diversity of protocadherin genes among teleosts
    • PID: 17394664
    • Yu W-P, Yew K, Rajasegaran V, Venkatesh B (2007) Sequencing and comparative analysis of fugu protocadherin clusters reveal diversity of protocadherin genes among teleosts. BMC Evol Biol 7:49
    • (2007) BMC Evol Biol , vol.7 , pp. 49
    • Yu, W.-P.1    Yew, K.2    Rajasegaran, V.3    Venkatesh, B.4
  • 149
    • 33644857126 scopus 로고    scopus 로고
    • Sodium channel genes and the evolution of diversity in communication signals of electric fishes: convergent molecular evolution
    • COI: 1:CAS:528:DC%2BD28XivFWisr4%3D, PID: 16505358
    • Zakon HH, Lu Y, Zwickl DJ, Hillis DM (2006) Sodium channel genes and the evolution of diversity in communication signals of electric fishes: convergent molecular evolution. Proc Natl Acad Sci USA 103:3675–3680
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 3675-3680
    • Zakon, H.H.1    Lu, Y.2    Zwickl, D.J.3    Hillis, D.M.4
  • 150
    • 84876192009 scopus 로고    scopus 로고
    • A consensus linkage map provides insights on genome character and evolution in common carp (Cyprinus carpio L.)
    • COI: 1:CAS:528:DC%2BC3sXlvV2gt7w%3D, PID: 23073608
    • Zhang X, Zhang Y, Zheng X, Kuang Y, Zhao Z, Zhao L, Li C, Jiang L, Cao D, Lu C, Xu P, Sun X (2013) A consensus linkage map provides insights on genome character and evolution in common carp (Cyprinus carpio L.). Mar Biotechnol 15:275–312
    • (2013) Mar Biotechnol , vol.15 , pp. 275-312
    • Zhang, X.1    Zhang, Y.2    Zheng, X.3    Kuang, Y.4    Zhao, Z.5    Zhao, L.6    Li, C.7    Jiang, L.8    Cao, D.9    Lu, C.10    Xu, P.11    Sun, X.12
  • 151
    • 80053160148 scopus 로고    scopus 로고
    • Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids
    • COI: 1:CAS:528:DC%2BC3MXht1Cisb%2FO, PID: 21900601
    • Zhou R, Moshgabadi N, Adams KL (2011) Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids. Proc Natl Acad Sci USA 108:16122–16127
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 16122-16127
    • Zhou, R.1    Moshgabadi, N.2    Adams, K.L.3


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