메뉴 건너뛰기




Volumn 31, Issue 5, 2014, Pages 1237-1247

Global coevolution of human micrornas and their target genes

Author keywords

Brain; Coevolution; Human evolution; MiRNA

Indexed keywords

MICRORNA; MICRORNA 132; NUCLEOTIDE;

EID: 84899513644     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msu090     Document Type: Article
Times cited : (51)

References (49)
  • 3
    • 0038343499 scopus 로고    scopus 로고
    • MicroRNA pathways in flies and worms: Growth, death, fat, stress, and timing
    • Ambros V. 2003. MicroRNA pathways in flies and worms: growth, death, fat, stress, and timing. Cell 113:673-676.
    • (2003) Cell , vol.113 , pp. 673-676
    • Ambros, V.1
  • 6
    • 84859309442 scopus 로고    scopus 로고
    • Threshold-independent meta-analysis of Alzheimer's disease transcriptomes shows progressive changes in hippocampal functions, epigenetics and microRNA regulation
    • Barbash S, Soreq H. 2012. Threshold-independent meta-analysis of Alzheimer's disease transcriptomes shows progressive changes in hippocampal functions, epigenetics and microRNA regulation. Curr Alzheimer Res. 9:425-435.
    • (2012) Curr Alzheimer Res , vol.9 , pp. 425-435
    • Barbash, S.1    Soreq, H.2
  • 7
    • 81355123438 scopus 로고    scopus 로고
    • Evolution of microRNA diversity and regulation in animals
    • Berezikov E. 2011. Evolution of microRNA diversity and regulation in animals. Nat Rev Genet. 12:846-860.
    • (2011) Nat Rev Genet , vol.12 , pp. 846-860
    • Berezikov, E.1
  • 9
    • 33846283385 scopus 로고    scopus 로고
    • The evolution of gene regulation by transcription factors and microRNAs
    • Chen K, Rajewsky N. 2007. The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet. 8(2):93-103.
    • (2007) Nat Rev Genet. , vol.8 , Issue.2 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 10
    • 0015818251 scopus 로고
    • Analyses of gene frequencies
    • Cockerham CC. 1973. Analyses of gene frequencies. Genetics 74:679-700.
    • (1973) Genetics , vol.74 , pp. 679-700
    • Cockerham, C.C.1
  • 12
    • 70350772348 scopus 로고    scopus 로고
    • MicroRNAs potentiate neural development
    • Fineberg SK, Kosik KS, Davidson BL. 2009. MicroRNAs potentiate neural development. Neuron 64:303-309.
    • (2009) Neuron , vol.64 , pp. 303-309
    • Fineberg, S.K.1    Kosik, K.S.2    Davidson, B.L.3
  • 13
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman RC, Farh KK, Burge CB, Bartel DP. 2009. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 19: 92-105.
    • (2009) Genome Res , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 14
    • 34347398567 scopus 로고    scopus 로고
    • Inference of miRNA targets using evolutionary conservation and pathway analysis
    • Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. 2007. Inference of miRNA targets using evolutionary conservation and pathway analysis. BMC Bioinformatics 8:69.
    • (2007) BMC Bioinformatics , vol.8 , pp. 69
    • Gaidatzis, D.1    Van Nimwegen, E.2    Hausser, J.3    Zavolan, M.4
  • 17
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: Small RNAs with a big role in gene regulation
    • He L, Hannon GJ. 2004. MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet. 5:522-531.
    • (2004) Nat Rev Genet , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 21
    • 18844380174 scopus 로고    scopus 로고
    • Polymorphisms in human pre-miRNAs
    • Iwai N, Naraba H. 2005. Polymorphisms in human pre-miRNAs. Biochem Biophys Res Commun. 331:1439-1444.
    • (2005) Biochem Biophys Res Commun , vol.331 , pp. 1439-1444
    • Iwai, N.1    Naraba, H.2
  • 23
    • 0016669094 scopus 로고
    • Evolution at two levels in humans and chimpanzees
    • King MC, Wilson AC. 1975. Evolution at two levels in humans and chimpanzees. Science 188:107-116.
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.C.1    Wilson, A.C.2
  • 25
    • 66249117657 scopus 로고    scopus 로고
    • Lowly expressed human microRNA genes evolve rapidly
    • Liang H, Li WH. 2009. Lowly expressed human microRNA genes evolve rapidly. Mol Biol Evol. 26:1195-1198.
    • (2009) Mol Biol Evol , vol.26 , pp. 1195-1198
    • Liang, H.1    Li, W.H.2
  • 27
    • 84863555312 scopus 로고    scopus 로고
    • Impact of microRNA regulation on variation in human gene expression
    • Lu J, Clark AG. 2012. Impact of microRNA regulation on variation in human gene expression. Genome Res. 22:1243-1254.
    • (2012) Genome Res , vol.22 , pp. 1243-1254
    • Lu, J.1    Clark, A.G.2
  • 31
    • 33748587841 scopus 로고    scopus 로고
    • A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
    • Miranda KC, Huynh T, Tay Y, Ang YS, Tam WL, Thomson AM, Lim B, Rigoutsos I. 2006. A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell 126:1203-1217.
    • (2006) Cell , vol.126 , pp. 1203-1217
    • Miranda, K.C.1    Huynh, T.2    Tay, Y.3    Ang, Y.S.4    Tam, W.L.5    Thomson, A.M.6    Lim, B.7    Rigoutsos, I.8
  • 33
    • 76049088399 scopus 로고    scopus 로고
    • Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain
    • Nowick K, Gernat T, Almaas E, Stubbs L. 2009. Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proc Natl Acad Sci U S A. 106: 22358-22363.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 22358-22363
    • Nowick, K.1    Gernat, T.2    Almaas, E.3    Stubbs, L.4
  • 34
    • 1842539516 scopus 로고    scopus 로고
    • A simple correction for multiple testing for singlenucleotide polymorphisms in linkage disequilibrium with each other
    • Nyholt DR. 2004. A simple correction for multiple testing for singlenucleotide polymorphisms in linkage disequilibrium with each other. Am J Hum Genet. 74:765-769.
    • (2004) Am J Hum Genet , vol.74 , pp. 765-769
    • Nyholt, D.R.1
  • 35
    • 33845231723 scopus 로고    scopus 로고
    • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    • Oldham MC, Horvath S, Geschwind DH. 2006. Conservation and evolution of gene coexpression networks in human and chimpanzee brains. Proc Natl Acad Sci U S A. 103:17973-17978.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 17973-17978
    • Oldham, M.C.1    Horvath, S.2    Geschwind, D.H.3
  • 36
    • 0033572284 scopus 로고    scopus 로고
    • The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation
    • Olsen PH, Ambros V. 1999. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev Biol. 216:671-680.
    • (1999) Dev Biol , vol.216 , pp. 671-680
    • Olsen, P.H.1    Ambros, V.2
  • 37
    • 74949092081 scopus 로고    scopus 로고
    • Detection of nonneutral substitution rates on mammalian phylogenies
    • Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A. 2010. Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res. 20:110-121.
    • (2010) Genome Res , vol.20 , pp. 110-121
    • Pollard, K.S.1    Hubisz, M.J.2    Rosenbloom, K.R.3    Siepel, A.4
  • 40
    • 84864449330 scopus 로고    scopus 로고
    • Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs
    • Roux J, Gonzalez-Porta M, Robinson-Rechavi M. 2012. Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs. Nucleic Acids Res. 40:5890-5900.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5890-5900
    • Roux, J.1    Gonzalez-Porta, M.2    Robinson-Rechavi, M.3
  • 42
    • 71749084011 scopus 로고    scopus 로고
    • MicroRNA-132 potentiates cholinergic anti-inflammatory signaling by targeting acetylcholinesterase
    • Shaked I, Meerson A, Wolf Y, Avni R, Greenberg D, Gilboa-Geffen A, Soreq H. 2009. MicroRNA-132 potentiates cholinergic anti-inflammatory signaling by targeting acetylcholinesterase. Immunity 31: 965-973.
    • (2009) Immunity , vol.31 , pp. 965-973
    • Shaked, I.1    Meerson, A.2    Wolf, Y.3    Avni, R.4    Greenberg, D.5    Gilboa-Geffen, A.6    Soreq, H.7
  • 43
    • 84872293448 scopus 로고    scopus 로고
    • Hippocampal microRNA-132 mediates stress-inducible cognitive deficits through its acetylcholinesterase target
    • Shaltiel G, Hanan M, Wolf Y, Barbash S, Kovalev E, Shoham S, Soreq H. 2013. Hippocampal microRNA-132 mediates stress-inducible cognitive deficits through its acetylcholinesterase target. Brain Struct Funct. 218:59-72.
    • (2013) Brain Struct Funct , vol.218 , pp. 59-72
    • Shaltiel, G.1    Hanan, M.2    Wolf, Y.3    Barbash, S.4    Kovalev, E.5    Shoham, S.6    Soreq, H.7
  • 44
    • 84855175650 scopus 로고    scopus 로고
    • MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates
    • Somel M, Liu X, Tang L, Yan Z, Hu H, Guo S, Jiang X, Zhang X, Xu G, Xie G, et al. 2011. MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates. PLoS Biol. 9: e1001214.
    • (2011) PLoS Biol , vol.9
    • Somel, M.1    Liu, X.2    Tang, L.3    Yan, Z.4    Hu, H.5    Guo, S.6    Jiang, X.7    Zhang, X.8    Xu, G.9    Xie, G.10
  • 45
    • 84876435649 scopus 로고    scopus 로고
    • Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes
    • Soreq L, Salomonis N, Bronstein M, Greenberg DS, Israel Z, Bergman H, Soreq H. 2013. Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes. Front Mol Neurosci. 6:10.
    • (2013) Front Mol Neurosci , vol.6 , pp. 10
    • Soreq, L.1    Salomonis, N.2    Bronstein, M.3    Greenberg, D.S.4    Israel, Z.5    Bergman, H.6    Soreq, H.7
  • 47
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 49
    • 62849101387 scopus 로고    scopus 로고
    • The anatomy of memory: An interactive overview of the parahippocampal-hippocampal network
    • van Strien NM, Cappaert NL, WitterMP. 2009. The anatomy of memory: an interactive overview of the parahippocampal-hippocampal network. Nat Rev Neurosci. 10:272-282.
    • (2009) Nat Rev Neurosci , vol.10 , pp. 272-282
    • Van Strien, N.M.1    Cappaert, N.L.2    Witter, M.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.