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Volumn 9, Issue 3, 2012, Pages 249-253

Are all the miRBase-registered microRNAs true? A structure- and expression-based re-examination in plants

Author keywords

Expression; High throughput sequencing; miRBase; Plant microRnas; Re examination; Secondary structure

Indexed keywords

MICRORNA; PLANT RNA; TRANSFER RNA;

EID: 84860762769     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.19230     Document Type: Article
Times cited : (37)

References (11)
  • 1
    • 0347755643 scopus 로고    scopus 로고
    • The microRNA Registry
    • PMID: 14681370
    • Griffiths-Jones S. The microRNA Registry. Nucleic Acids Res 2004; 32(Database issue):D109-11; PMID: 14681370; http://dx.doi.org/10.1093/nar/gkh023
    • (2004) Nucleic Acids Res , vol.32 , Issue.DATABASE ISSUE
    • Griffiths-Jones, S.1
  • 2
    • 38549150275 scopus 로고    scopus 로고
    • miRBase: Tools for microRNA genomics
    • PMID: 17991681
    • Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. miRBase: tools for microRNA genomics. Nucleic Acids Res 2008; 36(Database issue):D154-8; PMID: 17991681; http://dx.doi.org/10.1093/nar/gkm952
    • (2008) Nucleic Acids Res , vol.36 , Issue.DATABASE ISSUE
    • Griffiths-Jones, S.1    Saini, H.K.2    Van Dongen, S.3    Enright, A.J.4
  • 3
    • 0037370020 scopus 로고    scopus 로고
    • A uniform system for microRNA annotation
    • PMID:12592000
    • Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, et al. A uniform system for microRNA annotation. RNA 2003; 9:277-9; PMID:12592000; http://dx.doi.org/10.1261/rna.2183803
    • (2003) RNA , vol.9 , pp. 277-279
    • Ambros, V.1    Bartel, B.2    Bartel, D.P.3    Burge, C.B.4    Carrington, J.C.5    Chen, X.6
  • 5
    • 79956087842 scopus 로고    scopus 로고
    • Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis
    • PMID: 21558790
    • Hansen TB, Kjems J, Bramsen JB. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. RNA Biol 2011; 8:378-83; PMID: 21558790; http://dx.doi.org/10.4161/rna.8.3.14333
    • (2011) RNA Biol , vol.8 , pp. 378-383
    • Hansen, T.B.1    Kjems, J.2    Bramsen, J.B.3
  • 6
    • 33645525893 scopus 로고    scopus 로고
    • MicroRNAS and their regulatory roles in plants
    • PMID:16669754
    • Jones-Rhoades MW, Bartel DP, Bartel B. MicroRNAS and their regulatory roles in plants. Annu Rev Plant Biol 2006; 57:19-53; PMID:16669754; http://dx.doi. org/10.1146/annurev.arplant.57.032905.105218
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 19-53
    • Jones-Rhoades, M.W.1    Bartel, D.P.2    Bartel, B.3
  • 7
    • 32544440797 scopus 로고    scopus 로고
    • RNAshapes: An integrated RNA analysis package based on abstract shapes
    • PMID:16357029
    • Steffen P, Voss B, Rehmsmeier M, Reeder J, Giegerich R. RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics 2006; 22: 500-3; PMID:16357029; http://dx.doi.org/10.1093/bioinformatics/btk010
    • (2006) Bioinformatics , vol.22 , pp. 500-503
    • Steffen, P.1    Voss, B.2    Rehmsmeier, M.3    Reeder, J.4    Giegerich, R.5
  • 8
    • 38149071979 scopus 로고    scopus 로고
    • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    • PMID: 17989254
    • Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC. Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res 2007; 17:1850-64; PMID: 17989254; http://dx.doi.org/10.1101/gr.6597907
    • (2007) Genome Res , vol.17 , pp. 1850-1864
    • Ruby, J.G.1    Stark, A.2    Johnston, W.K.3    Kellis, M.4    Bartel, D.P.5    Lai, E.C.6
  • 9
    • 81255210925 scopus 로고    scopus 로고
    • Construction of MicroRNA- and MicroRNA*-mediated regulatory networks in plants
    • PMID:21955495
    • Meng Y, Shao C, Gou L, Jin Y, Chen M. Construction of MicroRNA- and MicroRNA*-mediated regulatory networks in plants. RNA Biol 2011; 8:1124-48; PMID:21955495; http://dx.doi.org/10.4161/rna.8.6.17743
    • (2011) RNA Biol , vol.8 , pp. 1124-1148
    • Meng, Y.1    Shao, C.2    Gou, L.3    Jin, Y.4    Chen, M.5
  • 10
    • 48249126187 scopus 로고    scopus 로고
    • The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1
    • PMID:18632569
    • Dong Z, Han MH, Fedoroff N. The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1. Proc Natl Acad Sci U S A 2008; 105:9970-5; PMID:18632569; http://dx. doi.org/10.1073/pnas.0803356105
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 9970-9975
    • Dong, Z.1    Han, M.H.2    Fedoroff, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.