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Volumn 32, Issue 5, 2015, Pages 1161-1174

A burst of miRNA innovation in the early evolution of butterflies and moths

Author keywords

Gli; homeobox; Lepidoptera; microRNA; segmentation; wing patterning

Indexed keywords

MICRORNA;

EID: 84929645894     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msv004     Document Type: Article
Times cited : (30)

References (57)
  • 1
    • 13944260434 scopus 로고    scopus 로고
    • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    • Baskerville S, Bartel DP. (2005). Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. RNA 11: 241-247
    • (2005) RNA , vol.11 , pp. 241-247
    • Baskerville, S.1    Bartel, D.P.2
  • 2
    • 84891773495 scopus 로고    scopus 로고
    • Can RNA-seq resolve the rapid radiation of advanced moths and butterflies (hexapoda: Lepidoptera: Apoditrysia)? An exploratory study
    • Bazinet AL, Cummings MP, Mitter KT, Mitter CW. (2013). Can RNA-seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)?. An exploratory study. PLoS One 8: e82615
    • (2013) Plos One , vol.8 , pp. e82615
    • Bazinet, A.L.1    Cummings, M.P.2    Mitter, K.T.3    Mitter, C.W.4
  • 4
    • 2642713364 scopus 로고    scopus 로고
    • The parahox gene cluster is an evolutionary sister of the hox gene cluster
    • Brooke NM, Garcia-Fernández J, Holland PW. (1998). The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster. Nature 392: 920-922
    • (1998) Nature , vol.392 , pp. 920-922
    • Brooke, N.M.1    Garcia-Fernández, J.2    Holland, P.W.3
  • 9
    • 78650141540 scopus 로고    scopus 로고
    • A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
    • Domazet-Lošo T, Tautz D. (2010). A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. Nature 468: 815-818
    • (2010) Nature , vol.468 , pp. 815-818
    • Domazet-Lošo, T.1    Tautz, D.2
  • 10
    • 42449086421 scopus 로고    scopus 로고
    • MiR-148 targets human DNMT3b protein coding region
    • Duursma AM, Kedde M, Schrier M, le Sage C, Agami R. (2008). miR-148 targets human DNMT3b protein coding region. RNA 14: 872-877
    • (2008) RNA , vol.14 , pp. 872-877
    • Duursma, A.M.1    Kedde, M.2    Schrier, M.3    Le Sage, C.4    Agami, R.5
  • 11
    • 84874360667 scopus 로고    scopus 로고
    • Identification of micrornas from plutella xylostella larvae associated with parasitization by diadegma semiclausum
    • Etebari K, Hussain M, Asgari S. (2013). Identification of microRNAs from Plutella xylostella larvae associated with parasitization by Diadegma semiclausum. Insect Biochem Mol Biol. 43: 309-318
    • (2013) Insect Biochem Mol Biol , vol.43 , pp. 309-318
    • Etebari, K.1    Hussain, M.2    Asgari, S.3
  • 12
    • 84908314650 scopus 로고    scopus 로고
    • Ancient expansion of the hox cluster in lepidoptera generated four homeobox genes implicated in extraembryonic tissue formation
    • Ferguson L, Marlétaz F, Carter J-M, Taylor WR, Gibbs M, Breuker CJ, Holland PWH. (2014). Ancient expansion of the hox cluster in lepidoptera generated four homeobox genes implicated in extraembryonic tissue formation. PLoS Genet. 10: e1004698
    • (2014) Plos Genet , vol.10 , pp. e1004698
    • Ferguson, L.1    Marlétaz, F.2    Carter, J.-M.3    Taylor, W.R.4    Gibbs, M.5    Breuker, C.J.6    Holland, P.W.H.7
  • 13
    • 11144230088 scopus 로고    scopus 로고
    • Molecular origins of rapid and continuous morphological evolution
    • Fondon JW, Garner HR. (2004). Molecular origins of rapid and continuous morphological evolution. Proc Natl Acad Sci USA. 101: 18058-18063
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 18058-18063
    • Fondon, J.W.1    Garner, H.R.2
  • 14
    • 54449097149 scopus 로고    scopus 로고
    • A search for conserved sequences in coding regions reveals that the let-7 microrna targets dicer within its coding sequence
    • Forman JJ, Legesse-Miller A, Coller HA. (2008). A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence. Proc Natl Acad Sci USA. 105: 14879-14884
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 14879-14884
    • Forman, J.J.1    Legesse-Miller, A.2    Coller, H.A.3
  • 15
    • 84855293838 scopus 로고    scopus 로고
    • MiRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    • Friedländer MR, Mackowiak SD, Li N, Chen W, Rajewsky N. (2012). miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res. 40: 37-52
    • (2012) Nucleic Acids Res , vol.40 , pp. 37-52
    • Friedländer, M.R.1    MacKowiak, S.D.2    Li, N.3    Chen, W.4    Rajewsky, N.5
  • 16
    • 84890412187 scopus 로고    scopus 로고
    • Substantial loss of conserved and gain of novel microRNA families in flatworms
    • Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L. (2013). Substantial loss of conserved and gain of novel microRNA families in flatworms. Mol Biol Evol. 30: 2619-2628
    • (2013) Mol Biol Evol , vol.30 , pp. 2619-2628
    • Fromm, B.1    Worren, M.M.2    Hahn, C.3    Hovig, E.4    Bachmann, L.5
  • 19
    • 59649125888 scopus 로고    scopus 로고
    • Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs
    • Gu S, Jin L, Zhang F, Sarnow P, Kay MA. (2009). Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs. Nat Struct Mol Biol. 16: 144-150
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 144-150
    • Gu, S.1    Jin, L.2    Zhang, F.3    Sarnow, P.4    Kay, M.A.5
  • 21
    • 84863496231 scopus 로고    scopus 로고
    • Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
    • Heliconius Genome Consortium. (2012). Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature 487: 94-98
    • (2012) Nature , vol.487 , pp. 94-98
    • Genome Consortium, H.1
  • 22
    • 77954517267 scopus 로고    scopus 로고
    • MicroRNAs and gene regulatory networks: Managing the impact of noise in biological systems
    • Herranz H, Cohen SM. (2010). MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems. Genes Dev. 24: 1339-1344
    • (2010) Genes Dev , vol.24 , pp. 1339-1344
    • Herranz, H.1    Cohen, S.M.2
  • 23
    • 84862998116 scopus 로고    scopus 로고
    • Transcriptome analysis reveals novel patterning and pigmentation genes underlying heliconius butterfly wing pattern variation
    • Hines HM, Papa R, Ruiz M, Papanicolaou A, Wang C, Nijhout HF, McMillan WO, Reed RD. (2012). Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation. BMC Genomics 13: 288
    • (2012) BMC Genomics , vol.13 , pp. 288
    • Hines, H.M.1    Papa, R.2    Ruiz, M.3    Papanicolaou, A.4    Wang, C.5    Nijhout, H.F.6    McMillan, W.O.7    Reed, R.D.8
  • 24
    • 84876352366 scopus 로고    scopus 로고
    • Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods
    • Hui JHL, Marco A, Hunt S, Melling J, Griffiths-Jones S, Ronshaugen M. (2013). Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. Nucleic Acids Res. 41: 3352-3361
    • (2013) Nucleic Acids Res , vol.41 , pp. 3352-3361
    • Hui, J.H.L.1    Marco, A.2    Hunt, S.3    Melling, J.4    Griffiths-Jones, S.5    Ronshaugen, M.6
  • 25
    • 0035577854 scopus 로고    scopus 로고
    • Hedgehog signaling in animal development: Paradigms and principles
    • Ingham PW, McMahon AP. (2001). Hedgehog signaling in animal development: paradigms and principles. Genes Dev. 15: 3059-3087
    • (2001) Genes Dev , vol.15 , pp. 3059-3087
    • Ingham, P.W.1    McMahon, A.P.2
  • 26
    • 33745227338 scopus 로고    scopus 로고
    • Regulation of body pigmentation by the abdominal-b hox protein and its gain and loss in drosophila evolution
    • Jeong S, Rokas A, Carroll SB. (2006). Regulation of body pigmentation by the abdominal-B Hox protein and its gain and loss in Drosophila evolution. Cell 125: 1387-1399
    • (2006) Cell , vol.125 , pp. 1387-1399
    • Jeong, S.1    Rokas, A.2    Carroll, S.B.3
  • 27
    • 84903120639 scopus 로고    scopus 로고
    • Phylogenomics provides strong evidence for relationships of butterflies and moths
    • Kawahara AY, Breinholt JW. (2014). Phylogenomics provides strong evidence for relationships of butterflies and moths. Proc Biol Sci. 281: 20140970
    • (2014) Proc Biol Sci , vol.281 , pp. 20140970
    • Kawahara, A.Y.1    Breinholt, J.W.2
  • 28
    • 84878980721 scopus 로고    scopus 로고
    • How are comparative genomics and the study of microRNAs changing our views on arthropod endocrinology and adaptations to the environment?
    • Kenny N, Quah S, Holland PWH, Tobe SS, Hui JHL. (2013). How are comparative genomics and the study of microRNAs changing our views on arthropod endocrinology and adaptations to the environment?. Gen Comp Endocrinol. 16-22
    • (2013) Gen Comp Endocrinol , pp. 16-22
    • Kenny, N.1    Quah, S.2    Holland, P.W.H.3    Tobe, S.S.4    Hui, J.H.L.5
  • 29
    • 34748821761 scopus 로고    scopus 로고
    • The role of site accessibility in microRNA target recognition
    • Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E. (2007). The role of site accessibility in microRNA target recognition. Nat Genet. 39: 1278-1284
    • (2007) Nat Genet , vol.39 , pp. 1278-1284
    • Kertesz, M.1    Iovino, N.2    Unnerstall, U.3    Gaul, U.4    Segal, E.5
  • 30
    • 0033593616 scopus 로고    scopus 로고
    • Recruitment of a hedgehog regulatory circuit in butterfly eyespot evolution
    • Keys DN. (1999). Recruitment of a hedgehog regulatory circuit in butterfly eyespot evolution. Science 283: 532-534
    • (1999) Science , vol.283 , pp. 532-534
    • Keys, D.N.1
  • 31
    • 78651293534 scopus 로고    scopus 로고
    • MiRBase: Integrating microRNA annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S. (2011). miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39: D152-7
    • (2011) Nucleic Acids Res , vol.39 , pp. D152-D157
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 32
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP. (2005). Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 33
    • 77950433105 scopus 로고    scopus 로고
    • Micrornas of bombyx mori identified by solexa sequencing
    • Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q. (2010). MicroRNAs of Bombyx mori identified by Solexa sequencing. BMC Genomics 11: 148
    • (2010) BMC Genomics , vol.11 , pp. 148
    • Liu, S.1    Li, D.2    Li, Q.3    Zhao, P.4    Xiang, Z.5    Xia, Q.6
  • 34
    • 70350444738 scopus 로고    scopus 로고
    • MicroRNA expression profiling during the life cycle of the silkworm (bombyx mori
    • Liu S, Zhang L, Li Q, Zhao P, Duan J, Cheng D, Xiang Z, Xia Q. 2009. MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori). BMC Genomics 10: 455
    • (2009) BMC Genomics , vol.10 , pp. 455
    • Liu, S.1    Zhang, L.2    Li, Q.3    Zhao, P.4    Duan, J.5    Cheng, D.6    Xiang, Z.7    Xia, Q.8
  • 39
    • 5144229657 scopus 로고    scopus 로고
    • The genome sequence of silkworm, bombyx mori
    • Mita K. (2004). The Genome sequence of silkworm, Bombyx mori. DNA Res. 11: 27-35
    • (2004) DNA Res , vol.11 , pp. 27-35
    • Mita, K.1
  • 41
    • 84894255713 scopus 로고    scopus 로고
    • Fast-evolving microRNAs are highly expressed in the early embryo of drosophila virilis
    • Ninova M, Ronshaugen M, Griffiths-Jones S. (2014). Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis. RNA 20: 360-372
    • (2014) RNA , vol.20 , pp. 360-372
    • Ninova, M.1    Ronshaugen, M.2    Griffiths-Jones, S.3
  • 42
    • 77958462907 scopus 로고    scopus 로고
    • Origins and evolution of microRNA genes in Drosophila species
    • Nozawa M, Miura S, Nei M. (2010). Origins and evolution of microRNA genes in Drosophila species. Genome Biol Evol. 2: 180-189
    • (2010) Genome Biol Evol , vol.2 , pp. 180-189
    • Nozawa, M.1    Miura, S.2    Nei, M.3
  • 43
    • 84866179197 scopus 로고    scopus 로고
    • A single origin for nymphalid butterfly eyespots followed by widespread loss of associated gene expression
    • Oliver JC, Tong X-L, Gall LF, Piel WH, Monteiro A. (2012). A single origin for nymphalid butterfly eyespots followed by widespread loss of associated gene expression. PLoS Genet. 8: e1002893
    • (2012) Plos Genet , vol.8 , pp. e1002893
    • Oliver, J.C.1    Tong, X.-L.2    Gall, L.F.3    Piel, W.H.4    Monteiro, A.5
  • 44
    • 70349320089 scopus 로고    scopus 로고
    • MicroRNAs and metazoan macroevolution: Insights into canalization, complexity, and the Cambrian explosion
    • Peterson KJ, Dietrich MR, McPeek MA. (2009). MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. Bioessays 31: 736-747
    • (2009) Bioessays , vol.31 , pp. 736-747
    • Peterson, K.J.1    Dietrich, M.R.2    McPeek, M.A.3
  • 47
    • 6344281172 scopus 로고    scopus 로고
    • Identification of mammalian microRNA host genes and transcription units
    • Rodriguez A, Griffiths-Jones S, Ashurst JL, Bradley A. (2004). Identification of mammalian microRNA host genes and transcription units. Genome Res. 14: 1902-1910
    • (2004) Genome Res , vol.14 , pp. 1902-1910
    • Rodriguez, A.1    Griffiths-Jones, S.2    Ashurst, J.L.3    Bradley, A.4
  • 48
    • 0033597828 scopus 로고    scopus 로고
    • Engrailed and hedgehog make the range of wingless asymmetric in drosophila embryos
    • Sanson B, Alexandre C, Fascetti N, Vincent J-P. (1999). Engrailed and hedgehog make the range of wingless asymmetric in Drosophila embryos. Cell 98: 207-216
    • (1999) Cell , vol.98 , pp. 207-216
    • Sanson, B.1    Alexandre, C.2    Fascetti, N.3    Vincent, J.-P.4
  • 51
    • 54549108798 scopus 로고    scopus 로고
    • Micrornas to nanog, oct4 and sox2 coding regions modulate embryonic stem cell differentiation
    • Tay Y, Zhang J, Thomson AM, Lim B, Rigoutsos I. (2008). MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature 455: 1124-1128
    • (2008) Nature , vol.455 , pp. 1124-1128
    • Tay, Y.1    Zhang, J.2    Thomson, A.M.3    Lim, B.4    Rigoutsos, I.5
  • 52
    • 84896692120 scopus 로고    scopus 로고
    • Timing and patterns in the taxonomic diversification of lepidoptera (butterflies and moths
    • Wahlberg N, Wheat CW, Peña C. (2013). Timing and patterns in the taxonomic diversification of Lepidoptera (butterflies and moths). PLoS One 8: e80875
    • (2013) Plos One , vol.8 , pp. e80875
    • Wahlberg, N.1    Wheat, C.W.2    Peña, C.3
  • 53
    • 38849145861 scopus 로고    scopus 로고
    • Prediction of both conserved and nonconserved microRNA targets in animals
    • Wang X, El Naqa IM. (2008). Prediction of both conserved and nonconserved microRNA targets in animals. Bioinformatics 24: 325-332
    • (2008) Bioinformatics , vol.24 , pp. 325-332
    • Wang, X.1    El Naqa, I.M.2
  • 55
    • 2142654329 scopus 로고    scopus 로고
    • MicroRNA-directed cleavage of hoxb8 mrna
    • Yekta S, Shih I-H, Bartel DP. (2004). MicroRNA-directed cleavage of HOXB8 mRNA. Science 304: 594-596
    • (2004) Science , vol.304 , pp. 594-596
    • Yekta, S.1    Shih, I.-H.2    Bartel, D.P.3
  • 57
    • 81855174762 scopus 로고    scopus 로고
    • The monarch butterfly genome yields insights into long-distance migration
    • Zhan S, Merlin C, Boore JL, Reppert SM. (2011). The monarch butterfly genome yields insights into long-distance migration. Cell 147: 1171-1185
    • (2011) Cell , vol.147 , pp. 1171-1185
    • Zhan, S.1    Merlin, C.2    Boore, J.L.3    Reppert, S.M.4


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