-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D. 2005. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105.
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
Arnold K, Bordoli L, Kopp J, Schwede T. 2006. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22:195-201.
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
3
-
-
79955379930
-
Vive la difference: Biogenesis and evolution of microRNAs in plants and animals
-
Axtell MJ, Westholm JO, Lai EC. 2011. Vive la difference: biogenesis and evolution of microRNAs in plants and animals. Genome Biol. 12:221.
-
(2011)
Genome Biol
, vol.12
, pp. 221
-
-
Axtell, M.J.1
Westholm, J.O.2
Lai, E.C.3
-
4
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP. 2009. MicroRNAs: target recognition and regulatory functions. Cell 136:215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
5
-
-
67650757433
-
TrimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
-
Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25:1972-1973.
-
(2009)
Bioinformatics
, vol.25
, pp. 1972-1973
-
-
Capella-Gutierrez, S.1
Silla-Martinez, J.M.2
Gabaldon, T.3
-
6
-
-
77950080387
-
The dynamic genome of Hydra
-
(74 co-authors)
-
Chapman JA, Kirkness EF, Simakov O, et al. (74 co-authors). 2010. The dynamic genome of Hydra. Nature 464:592-596.
-
(2010)
Nature
, vol.464
, pp. 592-596
-
-
Chapman, J.A.1
Kirkness, E.F.2
Simakov, O.3
-
7
-
-
77953183812
-
A dicerindependentmiRNA biogenesis pathway that requires Ago catalysis
-
Cheloufi S, Dos Santos CO, Chong MM, Hannon GJ. 2010. A dicerindependentmiRNA biogenesis pathway that requires Ago catalysis. Nature 465:584-589.
-
(2010)
Nature
, vol.465
, pp. 584-589
-
-
Cheloufi, S.1
Dos Santos, C.O.2
Chong, M.M.3
Hannon, G.J.4
-
8
-
-
77956278269
-
Canonical and alternate functions of themicroRNA biogenesis machinery
-
Chong MM, Zhang G, Cheloufi S, Neubert TA, Hannon GJ, Littman DR. 2010. Canonical and alternate functions of themicroRNA biogenesis machinery. Genes Dev. 24:1951-1960.
-
(1951)
Genes Dev.
, pp. 24
-
-
Chong, M.M.1
Zhang, G.2
Cheloufi, S.3
Neubert, T.A.4
Hannon, G.J.5
Littman, D.R.6
-
9
-
-
77649193420
-
Ancient animal microRNAs and the evolution of tissue identity
-
Christodoulou F, Raible F, Tomer R, Simakov O, Trachana K, Klaus S, Snyman H, Hannon GJ, Bork P, Arendt D. 2010. Ancient animal microRNAs and the evolution of tissue identity. Nature 463: 1084-1088.
-
(2010)
Nature
, vol.463
, pp. 1084-1088
-
-
Christodoulou, F.1
Raible, F.2
Tomer, R.3
Simakov, O.4
Trachana, K.5
Klaus, S.6
Snyman, H.7
Hannon, G.J.8
Bork, P.9
Arendt, D.10
-
10
-
-
77953897182
-
A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity
-
(12 co-authors)
-
Cifuentes D, Xue H, Taylor DW, et al. (12 co-authors). 2010. A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity. Science 328:1694-1698.
-
(2010)
Science
, vol.328
, pp. 1694-1698
-
-
Cifuentes, D.1
Xue, H.2
Taylor, D.W.3
-
11
-
-
78650306521
-
Small RNA sorting: Matchmaking for Argonautes
-
Czech B, Hannon GJ. 2011. Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet. 12:19-31.
-
(2011)
Nat Rev Genet.
, vol.12
, pp. 19-31
-
-
Czech, B.1
Hannon, G.J.2
-
12
-
-
49849087644
-
Evolution of complex structures: Minicollagens shape the cnidarian nematocyst
-
David CN, Ozbek S, Adamczyk P,Meier S, Pauly B, Chapman J, Hwang JS, Gojobori T, Holstein TW. 2008. Evolution of complex structures: minicollagens shape the cnidarian nematocyst. Trends Genet. 24: 431-438.
-
(2008)
Trends Genet
, vol.24
, pp. 431-438
-
-
David, C.N.1
Ozbek, S.2
Adamczyk, P.3
Meier, S.4
Pauly, B.5
Chapman, J.6
Hwang, J.S.7
Gojobori, T.8
Holstein, T.W.9
-
13
-
-
66249092431
-
Multiple dicer genes in the early-diverging metazoa
-
de Jong D, Eitel M, Jakob W, Osigus HJ, Hadrys H, Desalle R, Schierwater B. 2009. Multiple dicer genes in the early-diverging metazoa. Mol Biol Evol. 26:1333-1340.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1333-1340
-
-
De Jong, D.1
Eitel, M.2
Jakob, W.3
Osigus, H.J.4
Hadrys, H.5
Desalle, R.6
Schierwater, B.7
-
14
-
-
77956170809
-
RNA-based antiviral immunity
-
Ding SW. 2010. RNA-based antiviral immunity. Nat Rev Immunol. 10: 632-644.
-
(2010)
Nat Rev Immunol
, vol.10
, pp. 632-644
-
-
Ding, S.W.1
-
15
-
-
85045352315
-
DRB2, DRB3 and DRB5 function in a non-canonical microRNA pathway in Arabidopsis thaliana
-
Eamens AL,Wook Kim K, Waterhouse PM. 2012. DRB2, DRB3 and DRB5 function in a non-canonical microRNA pathway in Arabidopsis thaliana. Plant Signal Behav. 7:1224-1229.
-
(2012)
Plant Signal Behav
, vol.7
, pp. 1224-1229
-
-
Eamens, A.L.1
Wook Kim, K.2
Waterhouse, P.M.3
-
16
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
17
-
-
84863624199
-
The structure of human argonaute-2 in complex with miR-20a
-
Elkayam E, Kuhn CD, Tocilj A, Haase AD, Greene EM, Hannon GJ, Joshua-Tor L. 2012. The structure of human argonaute-2 in complex with miR-20a. Cell 150:100-110.
-
(2012)
Cell
, vol.150
, pp. 100-110
-
-
Elkayam, E.1
Kuhn, C.D.2
Tocilj, A.3
Haase, A.D.4
Greene, E.M.5
Hannon, G.J.6
Joshua Tor, L.7
-
18
-
-
82255195530
-
The Cambrian conundrum: Early divergence and later ecological success in the early history of animals
-
Erwin DH, Laflamme M, Tweedt SM, Sperling EA, Pisani D, Peterson KJ. 2011. The Cambrian conundrum: early divergence and later ecological success in the early history of animals. Science 334: 1091-1097.
-
(2011)
Science
, vol.334
, pp. 1091-1097
-
-
Erwin, D.H.1
Laflamme, M.2
Tweedt, S.M.3
Sperling, E.A.4
Pisani, D.5
Peterson, K.J.6
-
19
-
-
67651000077
-
The GW182 protein family in animal cells: New insights into domains required for miRNA-mediated gene silencing
-
Eulalio A, Tritschler F, Izaurralde E. 2009. The GW182 protein family in animal cells: new insights into domains required for miRNA-mediated gene silencing. RNA 15:1433-1442.
-
(2009)
RNA
, vol.15
, pp. 1433-1442
-
-
Eulalio, A.1
Tritschler, F.2
Izaurralde, E.3
-
20
-
-
18944374377
-
Vasa and nanos expression patterns in a sea anemone and the evolution of bilaterian germ cell specification mechanisms
-
Extavour CG, Pang K, Matus DQ, Martindale MQ. 2005. vasa and nanos expression patterns in a sea anemone and the evolution of bilaterian germ cell specification mechanisms. Evol Dev. 7:201-215.
-
(2005)
Evol Dev
, vol.7
, pp. 201-215
-
-
Extavour, C.G.1
Pang, K.2
Matus, D.Q.3
Martindale, M.Q.4
-
21
-
-
84861866572
-
The mechanics of miRNA-mediated gene silencing: A look under the hood of miRISC
-
Fabian MR, Sonenberg N. 2012. The mechanics of miRNA-mediated gene silencing: a look under the hood of miRISC. Nat Struct Mol Biol. 19:586-593.
-
(2012)
Nat Struct Mol Biol.
, vol.19
, pp. 586-593
-
-
Fabian, M.R.1
Sonenberg, N.2
-
22
-
-
84879799371
-
The making of a slicer: Activation of human argonaute-1
-
Faehnle CR, Elkayam E, Haase Astrid D, Hannon GJ, Joshua-Tor L. 2013. The making of a slicer: activation of human argonaute-1. Cell Rep. 3: 1901-1909.
-
(2013)
Cell Rep.
, vol.3
, pp. 1901-1909
-
-
Faehnle, C.R.1
Elkayam, E.2
Haase Astrid, D.3
Hannon, G.J.4
Joshua Tor, L.5
-
23
-
-
84856562355
-
The NCBI taxonomy server
-
Federhen S. 2012. The NCBI taxonomy server. Nucleic Acids Res. 40: D136-D143.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Federhen, S.1
-
24
-
-
54149095553
-
Biological principles of microRNA-mediated regulation: Shared themes amid diversity
-
Flynt AS, Lai EC. 2008. Biological principles of microRNA-mediated regulation: shared themes amid diversity. Nat Rev Genet. 9:831-842.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 831-842
-
-
Flynt, A.S.1
Lai, E.C.2
-
25
-
-
10044222704
-
CLANS: A Java application for visualizing protein families based on pairwise similarity
-
Frickey T, Lupas A. 2004. CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 20: 3702-3704.
-
(2004)
Bioinformatics
, vol.20
, pp. 3702-3704
-
-
Frickey, T.1
Lupas, A.2
-
26
-
-
84868106469
-
Dicer partner proteins tune the length of mature miRNAs in flies and mammals
-
Fukunaga R, Han BW, Hung JH, Xu J, Weng Z, Zamore PD. 2012. Dicer partner proteins tune the length of mature miRNAs in flies and mammals. Cell 151:533-546.
-
(2012)
Cell
, vol.151
, pp. 533-546
-
-
Fukunaga, R.1
Han, B.W.2
Hung, J.H.3
Xu, J.4
Weng, Z.5
Zamore, P.D.6
-
27
-
-
70949091104
-
In situ hybridization of starlet sea anemone (Nematostella vectensis) embryos, larvae, and polyps
-
pdb.prot
-
Genikhovich G, Technau U. 2009. In situ hybridization of starlet sea anemone (Nematostella vectensis) embryos, larvae, and polyps. Cold Spring Harb Protoc. 2009: pdb.prot5282.
-
(2009)
Cold Spring Harb Protoc
, pp. 5282
-
-
Genikhovich, G.1
Technau, U.2
-
28
-
-
55249115975
-
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
-
Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP. 2008. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature 455: 1193-1197.
-
(2008)
Nature
, vol.455
, pp. 1193-1197
-
-
Grimson, A.1
Srivastava, M.2
Fahey, B.3
Woodcroft, B.J.4
Chiang, H.R.5
King, N.6
Degnan, B.M.7
Rokhsar, D.S.8
Bartel, D.P.9
-
29
-
-
67650590937
-
Ars2 links the nuclear cap-binding complex to RNA interference and cell proliferation
-
(14 co-authors)
-
Gruber JJ, Zatechka DS, Sabin LR, et al. (14 co-authors). 2009. Ars2 links the nuclear cap-binding complex to RNA interference and cell proliferation. Cell 138:328-339.
-
(2009)
Cell
, vol.138
, pp. 328-339
-
-
Gruber, J.J.1
Zatechka, D.S.2
Sabin, L.R.3
-
30
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59:307-321.
-
(2010)
Syst Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
31
-
-
0742323351
-
The Arabidopsis doublestranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation
-
Han MH, Goud S, Song L, Fedoroff N. 2004. The Arabidopsis doublestranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc Natl Acad Sci USA. 101:1093-1098.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1093-1098
-
-
Han, M.H.1
Goud, S.2
Song, L.3
Fedoroff, N.4
-
32
-
-
72749099971
-
Assessing the root of bilaterian animals with scalable phylogenomic methods
-
(17 co-authors)
-
Hejnol A, Obst M, Stamatakis A, et al. (17 co-authors). 2009. Assessing the root of bilaterian animals with scalable phylogenomic methods. Proc Biol Sci. 276:4261-4270.
-
(2009)
Proc Biol Sci
, vol.276
, pp. 4261-4270
-
-
Hejnol, A.1
Obst, M.2
Stamatakis, A.3
-
33
-
-
70349939426
-
Structural insights into mechanisms of the small RNAmethyltransferase HEN1
-
Huang Y, Ji L, Huang Q, Vassylyev DG, Chen X, Ma JB. 2009. Structural insights into mechanisms of the small RNAmethyltransferase HEN1. Nature 461:823-827.
-
(2009)
Nature
, vol.461
, pp. 823-827
-
-
Huang, Y.1
Ji, L.2
Huang, Q.3
Vassylyev, D.G.4
Chen, X.5
Ma, J.B.6
-
34
-
-
78751477191
-
Gene silencing by microRNAs: Contributions of translational repression and mRNA decay
-
Huntzinger E, Izaurralde E. 2011. Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nat Rev Genet. 12:99-110.
-
(2011)
Nat Rev Genet.
, vol.12
, pp. 99-110
-
-
Huntzinger, E.1
Izaurralde, E.2
-
35
-
-
84862803181
-
Regulation of small RNA stability: Methylation and beyond
-
Ji L, Chen X. 2012. Regulation of small RNA stability: methylation and beyond. Cell Res. 22:624-636.
-
(2012)
Cell Res.
, vol.22
, pp. 624-636
-
-
Ji, L.1
Chen, X.2
-
36
-
-
78149285872
-
Hen1 is required for oocyte development and piRNA stability in zebrafish
-
Kamminga LM, Luteijn MJ, den Broeder MJ, Redl S, Kaaij LJ, Roovers EF, Ladurner P, Berezikov E, Ketting RF. 2010. Hen1 is required for oocyte development and piRNA stability in zebrafish. EMBO J. 29: 3688-3700.
-
(2010)
EMBO J.
, vol.29
, pp. 3688-3700
-
-
Kamminga, L.M.1
Luteijn, M.J.2
Den Broeder, M.J.3
Redl, S.4
Kaaij, L.J.5
Roovers, E.F.6
Ladurner, P.7
Berezikov, E.8
Ketting, R.F.9
-
37
-
-
79961091137
-
Evolution of RNA-binding proteins in animals: Insights from genome-wide analysis in the sponge Amphimedon queenslandica
-
Kerner P, Degnan SM, Marchand L, Degnan BM, Vervoort M. 2011. Evolution of RNA-binding proteins in animals: insights from genome-wide analysis in the sponge Amphimedon queenslandica. Mol Biol Evol. 28:2289-2303.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 2289-2303
-
-
Kerner, P.1
Degnan, S.M.2
Marchand, L.3
Degnan, B.M.4
Vervoort, M.5
-
39
-
-
84871774284
-
Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata
-
Krishna S, Nair A, Cheedipudi S, Poduval D, Dhawan J, Palakodeti D, Ghanekar Y. 2013. Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata. Nucleic Acid Res. 41:599-616.
-
(2013)
Nucleic Acid Res.
, vol.41
, pp. 599-616
-
-
Krishna, S.1
Nair, A.2
Cheedipudi, S.3
Poduval, D.4
Dhawan, J.5
Palakodeti, D.6
Ghanekar, Y.7
-
40
-
-
84861854141
-
The Caenorhabditis elegans GW182 protein AIN-1 interacts with PAB-1 and subunits of the PAN2-PAN3 and CCR4-NOT deadenylase complexes
-
Kuzuoglu-Ozturk D, Huntzinger E, Schmidt S, Izaurralde E. 2012. The Caenorhabditis elegans GW182 protein AIN-1 interacts with PAB-1 and subunits of the PAN2-PAN3 and CCR4-NOT deadenylase complexes. Nucleic Acids Res. 40:5651-5665.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5651-5665
-
-
Kuzuoglu-Ozturk, D.1
Huntzinger, E.2
Schmidt, S.3
Izaurralde, E.4
-
41
-
-
1842816517
-
Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
-
Lee YS, Nakahara K, Pham JW, Kim K, He Z, Sontheimer EJ, Carthew RW. 2004. Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell 117:69-81.
-
(2004)
Cell
, vol.117
, pp. 69-81
-
-
Lee, Y.S.1
Nakahara, K.2
Pham, J.W.3
Kim, K.4
He, Z.5
Sontheimer, E.J.6
Carthew, R.W.7
-
42
-
-
44649136660
-
Autoinhibition of human dicer by its internal helicase domain
-
Ma E, MacRae IJ, Kirsch JF, Doudna JA. 2008. Autoinhibition of human dicer by its internal helicase domain. J Mol Biol. 380:237-243.
-
(2008)
J Mol Biol
, vol.380
, pp. 237-243
-
-
Ma, E.1
MacRae, I.J.2
Kirsch, J.F.3
Doudna, J.A.4
-
43
-
-
84864688599
-
DGCR8 HITS-CLIP reveals novel functions for the microprocessor
-
Macias S, Plass M, Stajuda A, Michlewski G, Eyras E, Caceres JF. 2012. DGCR8 HITS-CLIP reveals novel functions for the microprocessor. Nat Struct Mol Biol. 19:760-766.
-
(2012)
Nat Struct Mol Biol.
, vol.19
, pp. 760-766
-
-
MacIas, S.1
Plass, M.2
Stajuda, A.3
Michlewski, G.4
Eyras, E.5
Caceres, J.F.6
-
44
-
-
78651285748
-
CDD: A Conserved Domain Database for the functional annotation of proteins
-
(27 co-authors)
-
Marchler-Bauer A, Lu S, Anderson JB, et al. (27 co-authors). 2011. CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 39:D225-D229.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
-
45
-
-
84871202631
-
MicroRNAs and essential components of the microRNA processing machinery are not encoded in the genome of the ctenophore Mnemiopsis leidyi
-
Maxwell EK, Ryan JF, Schnitzler CE, Browne WE, Baxevanis AD. 2012. MicroRNAs and essential components of the microRNA processing machinery are not encoded in the genome of the ctenophore Mnemiopsis leidyi. BMC Genomics 13:714.
-
(2012)
BMC Genomics
, vol.13
, pp. 714
-
-
Maxwell, E.K.1
Ryan, J.F.2
Schnitzler, C.E.3
Browne, W.E.4
Baxevanis, A.D.5
-
46
-
-
84856375470
-
Translational inhibition by deadenylation-independent mechanisms is central to microRNA-mediated silencing in zebrafish
-
Mishima Y, Fukao A, Kishimoto T, Sakamoto H, Fujiwara T, Inoue K. 2012. Translational inhibition by deadenylation-independent mechanisms is central to microRNA-mediated silencing in zebrafish. Proc Natl Acad Sci USA. 109:1104-1109.
-
(2012)
Proc Natl Acad Sci USA.
, vol.109
, pp. 1104-1109
-
-
Mishima, Y.1
Fukao, A.2
Kishimoto, T.3
Sakamoto, H.4
Fujiwara, T.5
Inoue, K.6
-
47
-
-
84876164436
-
Analysis of soluble protein contents from the nematocysts of a model sea anemone sheds light on venom evolution
-
Moran Y, Praher D, Schlesinger A, Ayalon A, Tal Y, Technau U. 2013. Analysis of soluble protein contents from the nematocysts of a model sea anemone sheds light on venom evolution. Mar Biotechnol. 15:329-339.
-
(2013)
Mar Biotechnol.
, vol.15
, pp. 329-339
-
-
Moran, Y.1
Praher, D.2
Schlesinger, A.3
Ayalon, A.4
Tal, Y.5
Technau, U.6
-
48
-
-
84860528360
-
Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO(2)-driven acidification during the initiation of calcification
-
Moya A, Huisman L, Ball EE, Hayward DC, Grasso LC, Chua CM, Woo HN, Gattuso JP, Foret S, Miller DJ. 2012. Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO(2)-driven acidification during the initiation of calcification. Mol Ecol. 21:2440-2454.
-
(2012)
Mol Ecol.
, vol.21
, pp. 2440-2454
-
-
Moya, A.1
Huisman, L.2
Ball, E.E.3
Hayward, D.C.4
Grasso, L.C.5
Chua, C.M.6
Woo, H.N.7
Gattuso, J.P.8
Foret, S.9
Miller, D.J.10
-
49
-
-
84873606896
-
Evolution of animal and plant dicers: Early parallel duplications and recurrent adaptation of antiviral RNA binding in plants
-
Mukherjee K, Campos H, Kolaczkowski B. 2013. Evolution of animal and plant dicers: early parallel duplications and recurrent adaptation of antiviral RNA binding in plants. Mol Biol Evol. 30:627-641.
-
(2013)
Mol Biol Evol.
, vol.30
, pp. 627-641
-
-
Mukherjee, K.1
Campos, H.2
Kolaczkowski, B.3
-
51
-
-
79960185923
-
Dicer recognizes the 5' end of RNA for efficient and accurate processing
-
Park JE, Heo I, Tian Y, Simanshu DK, Chang H, Jee D, Patel DJ, Kim VN. 2011. Dicer recognizes the 5' end of RNA for efficient and accurate processing. Nature 475:201-205.
-
(2011)
Nature
, vol.475
, pp. 201-205
-
-
Park, J.E.1
Heo, I.2
Tian, Y.3
Simanshu, D.K.4
Chang, H.5
Jee, D.6
Patel, D.J.7
Kim, V.N.8
-
53
-
-
79953716259
-
Resolving difficult phylogenetic questions: Why more sequences are not enough
-
Philippe H, Brinkmann H, Lavrov DV, Littlewood DT, Manuel M, Worheide G, Baurain D. 2011. Resolving difficult phylogenetic questions: why more sequences are not enough. PLoS Biol. 9:e1000602.
-
(2011)
PLoS Biol.
, vol.9
-
-
Philippe, H.1
Brinkmann, H.2
Lavrov, D.V.3
Littlewood, D.T.4
Manuel, M.5
Worheide, G.6
Baurain, D.7
-
55
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
(19 co-authors)
-
Putnam NH, Srivastava M, Hellsten U, et al. (19 co-authors). 2007. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317:86-94.
-
(2007)
Science
, vol.317
, pp. 86-94
-
-
Putnam, N.H.1
Srivastava, M.2
Hellsten, U.3
-
56
-
-
33751265748
-
The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones
-
Qiu XB, Shao YM, Miao S, Wang L. 2006. The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones. Cell Mol Life Sci. 63:2560-2570.
-
(2006)
Cell Mol Life Sci
, vol.63
, pp. 2560-2570
-
-
Qiu, X.B.1
Shao, Y.M.2
Miao, S.3
Wang, L.4
-
57
-
-
18744407284
-
Purified Argonaute2 and an siRNA form recombinant human RISC
-
Rivas FV, Tolia NH, Song JJ, Aragon JP, Liu J, Hannon GJ, Joshua-Tor L. 2005. Purified Argonaute2 and an siRNA form recombinant human RISC. Nat Struct Mol Biol. 12:340-349.
-
(2005)
Nat Struct Mol Biol.
, vol.12
, pp. 340-349
-
-
Rivas, F.V.1
Tolia, N.H.2
Song, J.J.3
Aragon, J.P.4
Liu, J.5
Hannon, G.J.6
Joshua Tor, L.7
-
58
-
-
84874781667
-
The identification of microRNAs in calcisponges: Independent evolution of microRNAs in basal metazoans
-
Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ. 2013. The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. J Exp Zool B. 320:84-93.
-
(2013)
J Exp Zool B.
, vol.320
, pp. 84-93
-
-
Robinson, J.M.1
Sperling, E.A.2
Bergum, B.3
Adamski, M.4
Nichols, S.A.5
Adamska, M.6
Peterson, K.J.7
-
59
-
-
0034212951
-
Staufen: A common component of mRNA transport in oocytes and neurons?
-
Roegiers F, Jan YN. 2000. Staufen: a common component of mRNA transport in oocytes and neurons? Trends Cell Biol. 10:220-224.
-
(2000)
Trends Cell Biol
, vol.10
, pp. 220-224
-
-
Roegiers, F.1
Jan, Y.N.2
-
60
-
-
67650638926
-
Ars2 regulates both miRNA-and siRNA-dependent silencing and suppresses RNA virus infection in Drosophila
-
Sabin LR, Zhou R, Gruber JJ, Lukinova N, Bambina S, Berman A, Lau CK, Thompson CB, Cherry S. 2009. Ars2 regulates both miRNA-and siRNA-dependent silencing and suppresses RNA virus infection in Drosophila. Cell 138:340-351.
-
(2009)
Cell
, vol.138
, pp. 340-351
-
-
Sabin, L.R.1
Zhou, R.2
Gruber, J.J.3
Lukinova, N.4
Bambina, S.5
Berman, A.6
Lau, C.K.7
Thompson, C.B.8
Cherry, S.9
-
61
-
-
80051936630
-
Using the Acropora digitifera genome to understand coral responses to environmental change
-
(13 co-authors)
-
Shinzato C, Shoguchi E, Kawashima T, et al. (13 co-authors). 2011. Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476:320-323.
-
(2011)
Nature
, vol.476
, pp. 320-323
-
-
Shinzato, C.1
Shoguchi, E.2
Kawashima, T.3
-
62
-
-
78650616943
-
A genomic view of 500 million years of cnidarian evolution
-
Steele RE, David CN, Technau U. 2011. A genomic view of 500 million years of cnidarian evolution. Trends Genet. 27:7-13.
-
(2011)
Trends Genet.
, vol.27
, pp. 7-13
-
-
Steele, R.E.1
David, C.N.2
Technau, U.3
-
64
-
-
79955447300
-
Evolutionary crossroads in developmental biology: Cnidaria
-
Technau U, Steele RE. 2011. Evolutionary crossroads in developmental biology: Cnidaria. Development 138:1447-1458.
-
(2011)
Development
, vol.138
, pp. 1447-1458
-
-
Technau, U.1
Steele, R.E.2
-
65
-
-
41949104147
-
Exploring systemic RNA interference in insects: A genome-wide survey for RNAi genes in Tribolium
-
Tomoyasu Y, Miller SC, Tomita S, Schoppmeier M, Grossmann D, Bucher G. 2008. Exploring systemic RNA interference in insects: a genome-wide survey for RNAi genes in Tribolium. Genome Biol. 9: R10.
-
(2008)
Genome Biol
, vol.9
-
-
Tomoyasu, Y.1
Miller, S.C.2
Tomita, S.3
Schoppmeier, M.4
Grossmann, D.5
Bucher, G.6
-
66
-
-
80455154961
-
Recognition of the pre-miRNA structure by Drosophila Dicer-1
-
Tsutsumi A, Kawamata T, Izumi N, Seitz H, Tomari Y. 2011. Recognition of the pre-miRNA structure by Drosophila Dicer-1. Nat Struct Mol Biol. 18:1153-1158.
-
(2011)
Nat Struct Mol Biol.
, vol.18
, pp. 1153-1158
-
-
Tsutsumi, A.1
Kawamata, T.2
Izumi, N.3
Seitz, H.4
Tomari, Y.5
-
67
-
-
1542350745
-
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing
-
Vazquez F, Gasciolli V, Crete P, Vaucheret H. 2004. The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol. 14:346-351.
-
(2004)
Curr Biol
, vol.14
, pp. 346-351
-
-
Vazquez, F.1
Gasciolli, V.2
Crete, P.3
Vaucheret, H.4
-
68
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O. 2009. Origin, biogenesis, and activity of plant microRNAs. Cell 136:669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
69
-
-
84870038812
-
Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties
-
Wee LM, Flores-Jasso CF, Salomon WE, Zamore PD. 2012. Argonaute divides its RNA guide into domains with distinct functions and RNA-binding properties. Cell 151:1055-1067.
-
(2012)
Cell
, vol.151
, pp. 1055-1067
-
-
Wee, L.M.1
Flores-Jasso, C.F.2
Salomon, W.E.3
Zamore, P.D.4
-
70
-
-
84875295536
-
RNAseq versus genome-predicted transcriptomes: A large population of novel transcripts identified in an Illumina-454 Hydra transcriptome
-
Wenger Y, Galliot B. 2013. RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome. BMC Genomics 14:204.
-
(2013)
BMC Genomics
, vol.14
, pp. 204
-
-
Wenger, Y.1
Galliot, B.2
-
71
-
-
58549086017
-
The deep evolution of metazoan microRNAs
-
Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ. 2009. The deep evolution of metazoan microRNAs. Evol Dev. 11:50-68.
-
(2009)
Evol Dev
, vol.11
, pp. 50-68
-
-
Wheeler, B.M.1
Heimberg, A.M.2
Moy, V.N.3
Sperling, E.A.4
Holstein, T.W.5
Heber, S.6
Peterson, K.J.7
-
72
-
-
0034711308
-
Human RNase III is a 160-kDa protein involved in preribosomal RNA processing
-
Wu H, Xu H, Miraglia LJ, Crooke ST. 2000. Human RNase III is a 160-kDa protein involved in preribosomal RNA processing. J Biol Chem. 275: 36957-36965.
-
(2000)
J Biol Chem
, vol.275
, pp. 36957-36965
-
-
Wu, H.1
Xu, H.2
Miraglia, L.J.3
Crooke, S.T.4
-
73
-
-
79960855405
-
Morphological and molecular analysis of the Nematostella vectensis cnidom
-
Zenkert C, Takahashi T, Diesner MO, Ozbek S. 2011. Morphological and molecular analysis of the Nematostella vectensis cnidom. PloS One 6: e22725.
-
(2011)
PloS One
, vol.6
-
-
Zenkert, C.1
Takahashi, T.2
Diesner, M.O.3
Ozbek, S.4
-
74
-
-
65249083468
-
Importance of the C-terminal domain of the human GW182 protein TNRC6C for translational repression
-
Zipprich JT, Bhattacharyya S, Mathys H, Filipowicz W. 2009. Importance of the C-terminal domain of the human GW182 protein TNRC6C for translational repression. RNA 15:781-793.
-
(2009)
RNA
, vol.15
, pp. 781-793
-
-
Zipprich, J.T.1
Bhattacharyya, S.2
Mathys, H.3
Filipowicz, W.4
|