메뉴 건너뛰기




Volumn 20, Issue 11, 2015, Pages 767-779

Unique Aspects of Plant Nonsense-Mediated mRNA Decay

Author keywords

Biotic stress; Mammalian NMD; NMD regulation; Plant NMD; RNA stability; UPF

Indexed keywords

MESSENGER RNA; PLANT RNA;

EID: 84946501062     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2015.08.011     Document Type: Review
Times cited : (81)

References (106)
  • 1
    • 84877801536 scopus 로고    scopus 로고
    • Quality control systems for aberrant mRNAs induced by aberrant translation elongation and termination
    • Inada T. Quality control systems for aberrant mRNAs induced by aberrant translation elongation and termination. BBA-Gene Regul. Mech. 2013, 1829:634-642.
    • (2013) BBA-Gene Regul. Mech. , vol.1829 , pp. 634-642
    • Inada, T.1
  • 2
    • 84894085209 scopus 로고    scopus 로고
    • Protecting the proteome: eukaryotic cotranslational quality control pathways
    • Lykke-Andersen J., Bennett E.J. Protecting the proteome: eukaryotic cotranslational quality control pathways. J. Cell Biol. 2014, 204:467-476.
    • (2014) J. Cell Biol. , vol.204 , pp. 467-476
    • Lykke-Andersen, J.1    Bennett, E.J.2
  • 3
    • 70349427200 scopus 로고    scopus 로고
    • MRNA degradation machinery in plants
    • Chiba Y., Green P.J. mRNA degradation machinery in plants. J. Plant Biol. 2009, 52:114-124.
    • (2009) J. Plant Biol. , vol.52 , pp. 114-124
    • Chiba, Y.1    Green, P.J.2
  • 4
    • 84867850145 scopus 로고    scopus 로고
    • NMD: a multifaceted response to premature translational termination
    • Kervestin S., Jacobson A. NMD: a multifaceted response to premature translational termination. Nat. Rev. Mol. Cell Biol. 2012, 13:700-712.
    • (2012) Nat. Rev. Mol. Cell Biol. , vol.13 , pp. 700-712
    • Kervestin, S.1    Jacobson, A.2
  • 5
    • 84901437738 scopus 로고    scopus 로고
    • The dharma of nonsense-mediated mRNA decay in mammalian cells
    • Popp M.W-L., Maquat L.E. The dharma of nonsense-mediated mRNA decay in mammalian cells. Mol. Cells 2014, 37:1-8.
    • (2014) Mol. Cells , vol.37 , pp. 1-8
    • Popp, M.W.-L.1    Maquat, L.E.2
  • 6
    • 84907476578 scopus 로고    scopus 로고
    • Regulation of natural mRNAs by then nonsensem-mediated mRNA decay pathway
    • Peccarelli M., Kebaara B.W. Regulation of natural mRNAs by then nonsensem-mediated mRNA decay pathway. Eukaryot. Cell 2014, 13:1126-1135.
    • (2014) Eukaryot. Cell , vol.13 , pp. 1126-1135
    • Peccarelli, M.1    Kebaara, B.W.2
  • 7
    • 84888617099 scopus 로고    scopus 로고
    • Organizing principles of mammalian nonsense-mediated mRNA decay
    • Popp M.W.L., Maquat L.E. Organizing principles of mammalian nonsense-mediated mRNA decay. Annu. Rev. Genet. 2013, 47:139-165.
    • (2013) Annu. Rev. Genet. , vol.47 , pp. 139-165
    • Popp, M.W.L.1    Maquat, L.E.2
  • 8
    • 84877818178 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay - mechanisms of substrate mRNA recognition and degradation in mammalian cells
    • Schweingruber C., et al. Nonsense-mediated mRNA decay - mechanisms of substrate mRNA recognition and degradation in mammalian cells. BBA-Gene Regul. Mech. 2013, 1829:612-623.
    • (2013) BBA-Gene Regul. Mech. , vol.1829 , pp. 612-623
    • Schweingruber, C.1
  • 9
    • 84929469314 scopus 로고    scopus 로고
    • Nonsense-mediated RNA decay - a switch and dial for regulating gene expression
    • Smith J.E., Baker K.E. Nonsense-mediated RNA decay - a switch and dial for regulating gene expression. Bioessays 2015, 37:612-623.
    • (2015) Bioessays , vol.37 , pp. 612-623
    • Smith, J.E.1    Baker, K.E.2
  • 10
    • 84888407848 scopus 로고    scopus 로고
    • Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome
    • Drechsel G., et al. Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome. Plant Cell 2013, 25:3726-3742.
    • (2013) Plant Cell , vol.25 , pp. 3726-3742
    • Drechsel, G.1
  • 11
    • 84859293997 scopus 로고    scopus 로고
    • Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
    • Kalyna M., et al. Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res. 2012, 40:2454-2469.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 2454-2469
    • Kalyna, M.1
  • 12
    • 60549106018 scopus 로고    scopus 로고
    • Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
    • Kurihara Y., et al. Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:2453-2458.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 2453-2458
    • Kurihara, Y.1
  • 13
    • 84907189359 scopus 로고    scopus 로고
    • The interaction of cytoplasmic poly(A)-binding protein with eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay
    • Fatscher T., et al. The interaction of cytoplasmic poly(A)-binding protein with eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay. RNA 2014, 20:1579-1592.
    • (2014) RNA , vol.20 , pp. 1579-1592
    • Fatscher, T.1
  • 14
    • 84929054432 scopus 로고    scopus 로고
    • Eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay by two genetically separable mechanisms
    • Joncourt R., et al. Eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay by two genetically separable mechanisms. PLoS ONE 2014, 9:1-16.
    • (2014) PLoS ONE , vol.9 , pp. 1-16
    • Joncourt, R.1
  • 15
    • 32044435368 scopus 로고    scopus 로고
    • Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay
    • Kashima I., et al. Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay. Genes Dev. 2006, 20:355-367.
    • (2006) Genes Dev. , vol.20 , pp. 355-367
    • Kashima, I.1
  • 16
    • 65449178454 scopus 로고    scopus 로고
    • SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay
    • Yamashita A., et al. SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay. Genes Dev. 2009, 23:1091-1105.
    • (2009) Genes Dev. , vol.23 , pp. 1091-1105
    • Yamashita, A.1
  • 17
    • 78651507958 scopus 로고    scopus 로고
    • The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8
    • Arias-Palomo E., et al. The nonsense-mediated mRNA decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8. Genes Dev. 2011, 25:153-164.
    • (2011) Genes Dev. , vol.25 , pp. 153-164
    • Arias-Palomo, E.1
  • 18
    • 84905705220 scopus 로고    scopus 로고
    • Structures of SMG1-UPFs complexes: SMG1 contributes to regulate UPF2-dependent activation of UPF1 in NMD
    • Melero R., et al. Structures of SMG1-UPFs complexes: SMG1 contributes to regulate UPF2-dependent activation of UPF1 in NMD. Structure 2014, 22:1105-1119.
    • (2014) Structure , vol.22 , pp. 1105-1119
    • Melero, R.1
  • 19
    • 79952686670 scopus 로고    scopus 로고
    • Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2
    • Chakrabarti S., et al. Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2. Mol. Cell 2011, 41:693-703.
    • (2011) Mol. Cell , vol.41 , pp. 693-703
    • Chakrabarti, S.1
  • 20
    • 78649720695 scopus 로고    scopus 로고
    • Cutting the nonsense: the degradation of PTC-containing mRNAs
    • Nicholson P., Muhlemann O. Cutting the nonsense: the degradation of PTC-containing mRNAs. Biochem. Soc. Trans. 2010, 38:1615-1620.
    • (2010) Biochem. Soc. Trans. , vol.38 , pp. 1615-1620
    • Nicholson, P.1    Muhlemann, O.2
  • 21
    • 0031840487 scopus 로고    scopus 로고
    • At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation
    • Zhang J., et al. At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation. Mol. Cell. Biol. 1998, 18:5272-5283.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 5272-5283
    • Zhang, J.1
  • 22
    • 43249084802 scopus 로고    scopus 로고
    • A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay
    • Singh G., et al. A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. PLoS Biol. 2008, 6:860-871.
    • (2008) PLoS Biol. , vol.6 , pp. 860-871
    • Singh, G.1
  • 23
    • 0034704201 scopus 로고    scopus 로고
    • Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
    • Lykke-Andersen J., et al. Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell 2000, 103:1121-1131.
    • (2000) Cell , vol.103 , pp. 1121-1131
    • Lykke-Andersen, J.1
  • 24
    • 0035823150 scopus 로고    scopus 로고
    • Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex
    • Kim V.N., et al. Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex. Science 2001, 293:1832-1836.
    • (2001) Science , vol.293 , pp. 1832-1836
    • Kim, V.N.1
  • 25
    • 34548294617 scopus 로고    scopus 로고
    • Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm
    • Singh G., et al. Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm. Mol. Cell 2007, 27:780-792.
    • (2007) Mol. Cell , vol.27 , pp. 780-792
    • Singh, G.1
  • 26
    • 77958459763 scopus 로고    scopus 로고
    • Upf1 senses 3' UTR length to potentiate mRNA decay
    • Hogg J., Goff S.P. Upf1 senses 3' UTR length to potentiate mRNA decay. Cell 2010, 143:379-389.
    • (2010) Cell , vol.143 , pp. 379-389
    • Hogg, J.1    Goff, S.P.2
  • 27
    • 84864933811 scopus 로고    scopus 로고
    • Evidence that the Upf1-related molecular motor scans the 3'-UTR to ensure mRNA integrity
    • Shigeoka T., et al. Evidence that the Upf1-related molecular motor scans the 3'-UTR to ensure mRNA integrity. Nucleic Acids Res. 2012, 40:6887-6897.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 6887-6897
    • Shigeoka, T.1
  • 28
    • 84881477715 scopus 로고    scopus 로고
    • Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs
    • Zund D., et al. Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs. Nat. Struct. Mol. Biol. 2013, 20:936-945.
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 936-945
    • Zund, D.1
  • 29
    • 84874504687 scopus 로고    scopus 로고
    • Rules that govern UPF1 binding to mRNA 3' UTRs
    • Kurosaki T., Maquat L.E. Rules that govern UPF1 binding to mRNA 3' UTRs. Proc. Natl. Acad. Sci. U.S.A. 2013, 110:3357-3362.
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110 , pp. 3357-3362
    • Kurosaki, T.1    Maquat, L.E.2
  • 30
    • 84936805108 scopus 로고    scopus 로고
    • Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities
    • Fiorini F., et al. Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities. Nat. Commun. 2015, 6:7581.
    • (2015) Nat. Commun. , vol.6 , pp. 7581
    • Fiorini, F.1
  • 31
    • 84928042455 scopus 로고    scopus 로고
    • Identification of elements in human long 3' UTRs that inhibit nonsense-mediated decay
    • Toma K.G., et al. Identification of elements in human long 3' UTRs that inhibit nonsense-mediated decay. RNA 2015, 21:887-897.
    • (2015) RNA , vol.21 , pp. 887-897
    • Toma, K.G.1
  • 32
    • 84906885914 scopus 로고    scopus 로고
    • A post-translational regulatory switch on UPF1 controls targeted mRNA degradation
    • Kurosaki T., et al. A post-translational regulatory switch on UPF1 controls targeted mRNA degradation. Genes Dev. 2014, 28:1900-1916.
    • (2014) Genes Dev. , vol.28 , pp. 1900-1916
    • Kurosaki, T.1
  • 33
    • 84868193382 scopus 로고    scopus 로고
    • RNA decay and RNA silencing in plants: competition or coll-aboration?
    • Christie M., et al. RNA decay and RNA silencing in plants: competition or coll-aboration?. Front. Plant Sci. 2011, 2:1-7.
    • (2011) Front. Plant Sci. , vol.2 , pp. 1-7
    • Christie, M.1
  • 34
    • 58149314191 scopus 로고    scopus 로고
    • Kill the messenger: mRNA decay and plant development
    • Belostotsky D.A., Sieburth L.E. Kill the messenger: mRNA decay and plant development. Curr. Opin. Plant Biol. 2009, 12:96-102.
    • (2009) Curr. Opin. Plant Biol. , vol.12 , pp. 96-102
    • Belostotsky, D.A.1    Sieburth, L.E.2
  • 35
    • 33745817833 scopus 로고    scopus 로고
    • UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis
    • Arciga-Reyes L., et al. UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J. 2006, 47:480-489.
    • (2006) Plant J. , vol.47 , pp. 480-489
    • Arciga-Reyes, L.1
  • 36
    • 27144540254 scopus 로고    scopus 로고
    • UPF3 suppresses aberrant spliced mRNA in Arabidopsis
    • Hori K., Watanabe Y. UPF3 suppresses aberrant spliced mRNA in Arabidopsis. Plant J. 2005, 43:530-540.
    • (2005) Plant J. , vol.43 , pp. 530-540
    • Hori, K.1    Watanabe, Y.2
  • 37
    • 69949191661 scopus 로고    scopus 로고
    • Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus
    • Kim S.H., et al. Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus. Plant Cell 2009, 21:2045-2057.
    • (2009) Plant Cell , vol.21 , pp. 2045-2057
    • Kim, S.H.1
  • 38
    • 84889096702 scopus 로고    scopus 로고
    • SMG1 is an ancient nonsense-mediated mRNA decay effector
    • Lloyd J.P.B., Davies B. SMG1 is an ancient nonsense-mediated mRNA decay effector. Plant J. 2013, 76:800-810.
    • (2013) Plant J. , vol.76 , pp. 800-810
    • Lloyd, J.P.B.1    Davies, B.2
  • 39
    • 84880534583 scopus 로고    scopus 로고
    • Plant nonsense-mediated mRNA decay is controlled by different autoregulatory circuits and can be induced by an EJC-like complex
    • Nyiko T., et al. Plant nonsense-mediated mRNA decay is controlled by different autoregulatory circuits and can be induced by an EJC-like complex. Nucleic Acids Res. 2013, 41:6715-6728.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 6715-6728
    • Nyiko, T.1
  • 40
    • 84863147213 scopus 로고    scopus 로고
    • Arabidopsis plants having defects in nonsense-mediated mRNA decay factors UPF1, UPF2, and UPF3 show photoperiod-dependent phenotypes in development and stress responses
    • Shi C., et al. Arabidopsis plants having defects in nonsense-mediated mRNA decay factors UPF1, UPF2, and UPF3 show photoperiod-dependent phenotypes in development and stress responses. J. Integr. Plant Biol. 2012, 54:99-114.
    • (2012) J. Integr. Plant Biol. , vol.54 , pp. 99-114
    • Shi, C.1
  • 41
    • 33745112583 scopus 로고    scopus 로고
    • The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis
    • Yoine M., et al. The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis. Plant J. 2006, 47:49-62.
    • (2006) Plant J. , vol.47 , pp. 49-62
    • Yoine, M.1
  • 42
    • 33745099773 scopus 로고    scopus 로고
    • Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth
    • Yoine M., et al. Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth. Plant Cell Physiol. 2006, 47:572-580.
    • (2006) Plant Cell Physiol. , vol.47 , pp. 572-580
    • Yoine, M.1
  • 43
    • 34547727203 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay (NMD) silences the accumulation of aberrant trypsin proteinase inhibitor mRNA in Nicotiana attenuata
    • Wu J., et al. Nonsense-mediated mRNA decay (NMD) silences the accumulation of aberrant trypsin proteinase inhibitor mRNA in Nicotiana attenuata. Plant J. 2007, 51:693-706.
    • (2007) Plant J. , vol.51 , pp. 693-706
    • Wu, J.1
  • 44
    • 48049087429 scopus 로고    scopus 로고
    • Arabidopsis SMG7 protein is required for exit from meiosis
    • Riehs N., et al. Arabidopsis SMG7 protein is required for exit from meiosis. J. Cell Sci. 2008, 121:2208-2216.
    • (2008) J. Cell Sci. , vol.121 , pp. 2208-2216
    • Riehs, N.1
  • 45
    • 44649127573 scopus 로고    scopus 로고
    • Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay
    • Kerenyi Z., et al. Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. EMBO J. 2008, 27:1585-1595.
    • (2008) EMBO J. , vol.27 , pp. 1585-1595
    • Kerenyi, Z.1
  • 46
    • 33845622065 scopus 로고    scopus 로고
    • Both introns and long 3'-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
    • Kertesz S., et al. Both introns and long 3'-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res. 2006, 34:6147-6157.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 6147-6157
    • Kertesz, S.1
  • 47
    • 34547659870 scopus 로고    scopus 로고
    • Context analysis of termination codons in mRNA that are recognized by plant NMD
    • Hori K., Watanabe Y. Context analysis of termination codons in mRNA that are recognized by plant NMD. Plant Cell Physiol. 2007, 48:1072-1078.
    • (2007) Plant Cell Physiol. , vol.48 , pp. 1072-1078
    • Hori, K.1    Watanabe, Y.2
  • 48
    • 33845609140 scopus 로고    scopus 로고
    • Stability of plant mRNAs depends on the length of the 3'-untranslated region
    • Schwartz A.M., et al. Stability of plant mRNAs depends on the length of the 3'-untranslated region. Biochemistry (Mosc.) 2006, 71:1377-1384.
    • (2006) Biochemistry (Mosc.) , vol.71 , pp. 1377-1384
    • Schwartz, A.M.1
  • 49
    • 70350216071 scopus 로고    scopus 로고
    • Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner
    • Nyiko T., et al. Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner. Plant Mol. Biol. 2009, 71:367-378.
    • (2009) Plant Mol. Biol. , vol.71 , pp. 367-378
    • Nyiko, T.1
  • 50
    • 71649110895 scopus 로고    scopus 로고
    • The upstream open reading frame of the Arabidopsis AtMHX gene has a strong impact on transcript accumulation through the nonsense-mediated mRNA decay pathway
    • Saul H., et al. The upstream open reading frame of the Arabidopsis AtMHX gene has a strong impact on transcript accumulation through the nonsense-mediated mRNA decay pathway. Plant J. 2009, 60:1031-1042.
    • (2009) Plant J. , vol.60 , pp. 1031-1042
    • Saul, H.1
  • 51
    • 84857478172 scopus 로고    scopus 로고
    • A role for nonsense-mediated mRNA decay in plants: pathogen responses are induced in Arabidopsis thaliana NMD mutants
    • Rayson S., et al. A role for nonsense-mediated mRNA decay in plants: pathogen responses are induced in Arabidopsis thaliana NMD mutants. PLoS ONE 2012, 7:1-13.
    • (2012) PLoS ONE , vol.7 , pp. 1-13
    • Rayson, S.1
  • 52
    • 84884660617 scopus 로고    scopus 로고
    • Gene expression regulation by upstream open reading frames and human disease
    • Barbosa C., et al. Gene expression regulation by upstream open reading frames and human disease. PLoS Genet. 2013, 9:e1003529.
    • (2013) PLoS Genet. , vol.9 , pp. e1003529
    • Barbosa, C.1
  • 53
    • 0031046735 scopus 로고    scopus 로고
    • Evidence that translation reinitiation abrogates nonsense-mediated mRNA decay in mammalian cells
    • Zhang J., Maquat L.E. Evidence that translation reinitiation abrogates nonsense-mediated mRNA decay in mammalian cells. EMBO J. 1997, 16:826-833.
    • (1997) EMBO J. , vol.16 , pp. 826-833
    • Zhang, J.1    Maquat, L.E.2
  • 54
    • 84930638652 scopus 로고    scopus 로고
    • Polyamine-responsive ribosomal arrest at the stop codon of an upstream open reading frame of the AdoMetDC1 gene triggers nonsense-mediated mRNA decay in Arabidopsis thaliana
    • Uchiyama-Kadokura N., et al. Polyamine-responsive ribosomal arrest at the stop codon of an upstream open reading frame of the AdoMetDC1 gene triggers nonsense-mediated mRNA decay in Arabidopsis thaliana. Plant Cell Physiol. 2014, 55:1556-1567.
    • (2014) Plant Cell Physiol. , vol.55 , pp. 1556-1567
    • Uchiyama-Kadokura, N.1
  • 55
    • 27644520989 scopus 로고    scopus 로고
    • Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay
    • Gaba A., et al. Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay. Mol. Cell 2005, 20:449-460.
    • (2005) Mol. Cell , vol.20 , pp. 449-460
    • Gaba, A.1
  • 56
    • 15944400722 scopus 로고    scopus 로고
    • Expression of AtMHX, an Arabidopsis vacuolar metal transporter, is repressed by the 5' untranslated region of its gene
    • David-Assael O., et al. Expression of AtMHX, an Arabidopsis vacuolar metal transporter, is repressed by the 5' untranslated region of its gene. J. Exp. Bot. 2005, 56:1039-1047.
    • (2005) J. Exp. Bot. , vol.56 , pp. 1039-1047
    • David-Assael, O.1
  • 57
    • 33846094478 scopus 로고    scopus 로고
    • Recognition of a weak-context upstream-AUG codon in the AtMHX gene is facilitated by the secondary structure of the 5' untranslated-region
    • David-Assael O., et al. Recognition of a weak-context upstream-AUG codon in the AtMHX gene is facilitated by the secondary structure of the 5' untranslated-region. Plant Sci. 2007, 172:354-362.
    • (2007) Plant Sci. , vol.172 , pp. 354-362
    • David-Assael, O.1
  • 58
    • 84910640414 scopus 로고    scopus 로고
    • Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes
    • Lykke-Andersen S., et al. Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes. Genes Dev. 2014, 28:2498-2517.
    • (2014) Genes Dev. , vol.28 , pp. 2498-2517
    • Lykke-Andersen, S.1
  • 59
    • 84941032369 scopus 로고    scopus 로고
    • Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells
    • Schmidt S.A., et al. Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells. Nucleic Acids Res. 2015, 43:309-323.
    • (2015) Nucleic Acids Res. , vol.43 , pp. 309-323
    • Schmidt, S.A.1
  • 60
    • 84871949409 scopus 로고    scopus 로고
    • The late steps of plant nonsense-mediated mRNA decay
    • Merai Z., et al. The late steps of plant nonsense-mediated mRNA decay. Plant J. 2013, 73:50-62.
    • (2013) Plant J. , vol.73 , pp. 50-62
    • Merai, Z.1
  • 61
    • 84856858152 scopus 로고    scopus 로고
    • N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD
    • Okada-Katsuhata Y., et al. N- and C-terminal Upf1 phosphorylations create binding platforms for SMG-6 and SMG-5:SMG-7 during NMD. Nucleic Acids Res. 2012, 40:1251-1266.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 1251-1266
    • Okada-Katsuhata, Y.1
  • 63
    • 77955339642 scopus 로고    scopus 로고
    • UPF1 association with the cap-binding protein, CBP80, promotes nonsense-mediated mRNA decay at two distinct steps
    • Hwang J., et al. UPF1 association with the cap-binding protein, CBP80, promotes nonsense-mediated mRNA decay at two distinct steps. Mol. Cell 2010, 39:396-409.
    • (2010) Mol. Cell , vol.39 , pp. 396-409
    • Hwang, J.1
  • 64
    • 27144478105 scopus 로고    scopus 로고
    • CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells
    • Hosoda N., et al. CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells. Nat. Struct. Mol. Biol. 2005, 12:893-901.
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 893-901
    • Hosoda, N.1
  • 65
    • 58149487767 scopus 로고    scopus 로고
    • The nuclear cap-binding protein complex is not essential for nonsense-mediated mRNA decay (NMD) in plants
    • Dzikiewicz-Krawczyk A., et al. The nuclear cap-binding protein complex is not essential for nonsense-mediated mRNA decay (NMD) in plants. Acta Biochim. Pol. 2008, 55:825-828.
    • (2008) Acta Biochim. Pol. , vol.55 , pp. 825-828
    • Dzikiewicz-Krawczyk, A.1
  • 66
    • 25844512736 scopus 로고    scopus 로고
    • Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements
    • Gehring N.H., et al. Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements. Mol. Cell 2005, 20:65-75.
    • (2005) Mol. Cell , vol.20 , pp. 65-75
    • Gehring, N.H.1
  • 67
    • 84867592374 scopus 로고    scopus 로고
    • Regulation of nonsense-mediated mRNA decay
    • Huang L., Wilkinson M.F. Regulation of nonsense-mediated mRNA decay. WIREs RNA 2012, 3:807-828.
    • (2012) WIREs RNA , vol.3 , pp. 807-828
    • Huang, L.1    Wilkinson, M.F.2
  • 68
    • 1842473091 scopus 로고    scopus 로고
    • The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3
    • Kadlec J., et al. The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3. Nat. Struct. Mol. Biol. 2004, 11:330-337.
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 330-337
    • Kadlec, J.1
  • 69
    • 33646865949 scopus 로고    scopus 로고
    • Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation
    • Kunz J.B., et al. Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation. RNA 2006, 12:1015-1022.
    • (2006) RNA , vol.12 , pp. 1015-1022
    • Kunz, J.B.1
  • 70
    • 40949148553 scopus 로고    scopus 로고
    • Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
    • Ivanov P.V., et al. Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways. EMBO J. 2008, 27:736-747.
    • (2008) EMBO J. , vol.27 , pp. 736-747
    • Ivanov, P.V.1
  • 71
    • 50649120174 scopus 로고    scopus 로고
    • Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast
    • Takahashi S., et al. Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast. RNA 2008, 14:1950-1958.
    • (2008) RNA , vol.14 , pp. 1950-1958
    • Takahashi, S.1
  • 72
    • 84897039206 scopus 로고    scopus 로고
    • Imaging of endogenous messenger RNA splice variants in living cells reveals nuclear retention of transcripts inaccessible to nonsense-mediated decay in Arabidopsis
    • Gohring J., et al. Imaging of endogenous messenger RNA splice variants in living cells reveals nuclear retention of transcripts inaccessible to nonsense-mediated decay in Arabidopsis. Plant Cell 2014, 26:754-764.
    • (2014) Plant Cell , vol.26 , pp. 754-764
    • Gohring, J.1
  • 73
    • 84920460444 scopus 로고    scopus 로고
    • Detained introns are a novel, widespread class of post-transcriptionally spliced introns
    • Boutz P.L., et al. Detained introns are a novel, widespread class of post-transcriptionally spliced introns. Gene. Dev. 2015, 29:63-80.
    • (2015) Gene. Dev. , vol.29 , pp. 63-80
    • Boutz, P.L.1
  • 74
    • 84861778204 scopus 로고    scopus 로고
    • Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention
    • Yap K., et al. Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention. Gene. Dev. 2012, 26:1209-1223.
    • (2012) Gene. Dev. , vol.26 , pp. 1209-1223
    • Yap, K.1
  • 75
    • 84881159187 scopus 로고    scopus 로고
    • Orchestrated intron retention regulates normal granulocyte differentiation
    • Wong J.J.L., et al. Orchestrated intron retention regulates normal granulocyte differentiation. Cell 2013, 154:583-595.
    • (2013) Cell , vol.154 , pp. 583-595
    • Wong, J.J.L.1
  • 76
    • 84877830445 scopus 로고    scopus 로고
    • Regulation of nonsense-mediated mRNA decay: Implications for physiology and disease
    • Karam R., et al. Regulation of nonsense-mediated mRNA decay: Implications for physiology and disease. BBA-Gene Regul. Mech. 2013, 1829:624-633.
    • (2013) BBA-Gene Regul. Mech. , vol.1829 , pp. 624-633
    • Karam, R.1
  • 77
    • 84872795590 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: from mechanistic insights to impacts on human health
    • Palacios I.M. Nonsense-mediated mRNA decay: from mechanistic insights to impacts on human health. Brief. Funct. Genomic. 2013, 12:25-36.
    • (2013) Brief. Funct. Genomic. , vol.12 , pp. 25-36
    • Palacios, I.M.1
  • 78
    • 77949811343 scopus 로고    scopus 로고
    • Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis
    • Gardner L.B. Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis. Mol. Cancer Res. 2010, 8:295-308.
    • (2010) Mol. Cancer Res. , vol.8 , pp. 295-308
    • Gardner, L.B.1
  • 79
    • 36849007471 scopus 로고    scopus 로고
    • Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation
    • Schoening J.C., et al. Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation. Plant J. 2007, 52:1119-1130.
    • (2007) Plant J. , vol.52 , pp. 1119-1130
    • Schoening, J.C.1
  • 80
    • 77952037290 scopus 로고    scopus 로고
    • A link between alternative splicing and nonsense-mediated mRNA decay in the control of THIC gene expression in Arabidopsis
    • Malanin S.Y., Nikiforova V. A link between alternative splicing and nonsense-mediated mRNA decay in the control of THIC gene expression in Arabidopsis. Russ. J. Plant Physiol. 2010, 57:267-272.
    • (2010) Russ. J. Plant Physiol. , vol.57 , pp. 267-272
    • Malanin, S.Y.1    Nikiforova, V.2
  • 81
    • 84901601014 scopus 로고    scopus 로고
    • Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis
    • Kwon Y.J., et al. Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis. BMC Plant Biol. 2014, 14.
    • (2014) BMC Plant Biol. , pp. 14
    • Kwon, Y.J.1
  • 82
    • 84874631428 scopus 로고    scopus 로고
    • The role of canonical and noncanonical pre-mRNA splicing in plant stress responses
    • Dubrovina A.S., et al. The role of canonical and noncanonical pre-mRNA splicing in plant stress responses. Biomed. Res. Int. 2013, 2013:264314.
    • (2013) Biomed. Res. Int. , vol.2013 , pp. 264314
    • Dubrovina, A.S.1
  • 83
    • 84888396486 scopus 로고    scopus 로고
    • Alternative splicing at the intersection of biological timing, development, and stress responses
    • Staiger D., Brown J.W. Alternative splicing at the intersection of biological timing, development, and stress responses. Plant Cell 2013, 25:3640-3656.
    • (2013) Plant Cell , vol.25 , pp. 3640-3656
    • Staiger, D.1    Brown, J.W.2
  • 84
    • 71249104734 scopus 로고    scopus 로고
    • Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay
    • Palusa S.G., Reddy A.S. Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay. New Phytol. 2010, 185:83-89.
    • (2010) New Phytol. , vol.185 , pp. 83-89
    • Palusa, S.G.1    Reddy, A.S.2
  • 85
    • 83255176939 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense
    • Jeong H.J., et al. Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense. Plant Cell Physiol. 2011, 52:2147-2156.
    • (2011) Plant Cell Physiol. , vol.52 , pp. 2147-2156
    • Jeong, H.J.1
  • 86
    • 84863218026 scopus 로고    scopus 로고
    • Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response
    • Riehs-Kearnan N., et al. Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response. Nucleic Acids Res. 2012, 40:5615-5624.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 5615-5624
    • Riehs-Kearnan, N.1
  • 87
    • 84907703051 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay modulates immune receptor levels to regulate plant antibacterial defense
    • Gloggnitzer J., et al. Nonsense-mediated mRNA decay modulates immune receptor levels to regulate plant antibacterial defense. Cell Host Microbe 2014, 16:376-390.
    • (2014) Cell Host Microbe , vol.16 , pp. 376-390
    • Gloggnitzer, J.1
  • 88
    • 84900829983 scopus 로고    scopus 로고
    • Transcriptional control of plant defence responses
    • Buscaill P., Rivas S. Transcriptional control of plant defence responses. Curr. Opin. Plant Biol. 2014, 20:35-46.
    • (2014) Curr. Opin. Plant Biol. , vol.20 , pp. 35-46
    • Buscaill, P.1    Rivas, S.2
  • 89
    • 77955091927 scopus 로고    scopus 로고
    • NB-LRR proteins: pairs, pieces, perception, partners, and pathways
    • Eitas T.K., Dangl J.L. NB-LRR proteins: pairs, pieces, perception, partners, and pathways. Curr. Opin. Plant Biol. 2010, 13:472-477.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 472-477
    • Eitas, T.K.1    Dangl, J.L.2
  • 90
    • 84868545662 scopus 로고    scopus 로고
    • The salicylic acid dependent and independent effects of NMD in plants
    • Rayson S., et al. The salicylic acid dependent and independent effects of NMD in plants. Plant Signal. Behav. 2012, 7:1434-1437.
    • (2012) Plant Signal. Behav. , vol.7 , pp. 1434-1437
    • Rayson, S.1
  • 91
    • 0035862813 scopus 로고    scopus 로고
    • Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability
    • Medghalchi S.M., et al. Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability. Hum. Mol. Genet. 2001, 10:99-105.
    • (2001) Hum. Mol. Genet. , vol.10 , pp. 99-105
    • Medghalchi, S.M.1
  • 92
    • 67650096774 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival
    • Wittkopp N., et al. Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival. Mol. Cell. Biol. 2009, 29:3517-3528.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 3517-3528
    • Wittkopp, N.1
  • 93
    • 79952651144 scopus 로고    scopus 로고
    • Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner
    • Avery P., et al. Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner. RNA 2011, 17:624-638.
    • (2011) RNA , vol.17 , pp. 624-638
    • Avery, P.1
  • 94
    • 79960902609 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: to die or not to die, that is the question
    • Hwang J., Maquat L.E. Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: to die or not to die, that is the question. Curr. Opin. Genet. Dev. 2011, 21:422-430.
    • (2011) Curr. Opin. Genet. Dev. , vol.21 , pp. 422-430
    • Hwang, J.1    Maquat, L.E.2
  • 95
    • 49949105213 scopus 로고    scopus 로고
    • The multiple lives of NMD factors: balancing roles in gene and genome regulation
    • Isken O., Maquat L.E. The multiple lives of NMD factors: balancing roles in gene and genome regulation. Nat. Rev. Genet. 2008, 9:699-712.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 699-712
    • Isken, O.1    Maquat, L.E.2
  • 96
    • 84864391764 scopus 로고    scopus 로고
    • UPF1 involvement in nuclear functions
    • Varsally W., Brogna S. UPF1 involvement in nuclear functions. Biochem. Soc. Trans. 2012, 40:778-783.
    • (2012) Biochem. Soc. Trans. , vol.40 , pp. 778-783
    • Varsally, W.1    Brogna, S.2
  • 97
    • 84858446718 scopus 로고    scopus 로고
    • Regulation of cytoplasmic mRNA decay
    • Schoenberg D.R., Maquat L.E. Regulation of cytoplasmic mRNA decay. Nat. Rev. Genet. 2012, 13:246-259.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 246-259
    • Schoenberg, D.R.1    Maquat, L.E.2
  • 98
    • 25844435702 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
    • Rehwinkel A., et al. Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. RNA 2005, 11:1530-1544.
    • (2005) RNA , vol.11 , pp. 1530-1544
    • Rehwinkel, A.1
  • 99
    • 6944256813 scopus 로고    scopus 로고
    • Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
    • Mendell J.T., et al. Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat. Genet. 2004, 36:1073-1078.
    • (2004) Nat. Genet. , vol.36 , pp. 1073-1078
    • Mendell, J.T.1
  • 100
    • 80052979901 scopus 로고    scopus 로고
    • RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD
    • Huang L.L., et al. RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD. Mol. Cell 2011, 43:950-961.
    • (2011) Mol. Cell , vol.43 , pp. 950-961
    • Huang, L.L.1
  • 101
    • 81755172088 scopus 로고    scopus 로고
    • Autoregulation of the nonsense-mediated mRNA decay pathway in human cells
    • Yepiskoposyan H., et al. Autoregulation of the nonsense-mediated mRNA decay pathway in human cells. RNA 2011, 17:2108-2118.
    • (2011) RNA , vol.17 , pp. 2108-2118
    • Yepiskoposyan, H.1
  • 102
    • 0034751160 scopus 로고    scopus 로고
    • Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)
    • Serin G., et al. Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4). Mol. Cell. Biol. 2001, 21:209-223.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 209-223
    • Serin, G.1
  • 103
    • 84930224880 scopus 로고    scopus 로고
    • The feedback control of UPF3 is crucial for RNA surveillance in plants
    • Degtiar E., et al. The feedback control of UPF3 is crucial for RNA surveillance in plants. Nucleic Acids Res. 2015, 43:4219-4235.
    • (2015) Nucleic Acids Res. , vol.43 , pp. 4219-4235
    • Degtiar, E.1
  • 104
    • 84870802818 scopus 로고    scopus 로고
    • Intimate liaison with SR proteins brings exon junction complexes to unexpected places
    • Muehlemann O. Intimate liaison with SR proteins brings exon junction complexes to unexpected places. Nat. Struct. Mol. Biol. 2012, 19:1209-1211.
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 1209-1211
    • Muehlemann, O.1
  • 105
    • 84896906968 scopus 로고    scopus 로고
    • In vivo determination of direct targets of the nonsense-mediated decay pathway in Drosophila
    • Chapin A., et al. In vivo determination of direct targets of the nonsense-mediated decay pathway in Drosophila. G3 2014, 4:485-496.
    • (2014) G3 , vol.4 , pp. 485-496
    • Chapin, A.1
  • 106
    • 38049103286 scopus 로고    scopus 로고
    • Association of yeast Upf1p with direct substrates of the NMD pathway
    • Johansson M.J., et al. Association of yeast Upf1p with direct substrates of the NMD pathway. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:20872-20877.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 20872-20877
    • Johansson, M.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.