Association of yeast Upf1p with direct substrates of the NMD pathway

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 52, 2007, Pages 20872-20877

  Johansson, Marcus J O ^a   He, Feng ^a   Spatrick, Phyllis ^a   Li, Chunfang ^a   Jacobson, Allan ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

Microarray analysis; mRNA half lives; Nonsense mediated mRNA decay; Translation termination; Upf proteins

Indexed keywords

MESSENGER RNA; REGULATOR PROTEIN; THIAMINE; UNCLASSIFIED DRUG; UPF1 PROTEIN;

ALTERNATIVE RNA SPLICING; ARTICLE; DNA FLANKING REGION; GENE EXPRESSION PROFILING; GENE REPRESSION; GENETIC CODE; MICROARRAY ANALYSIS; MOLECULAR DYNAMICS; NONHUMAN; NONSENSE MEDIATE MRNA DECAY; PRIORITY JOURNAL; RNA TRANSCRIPTION; SACCHAROMYCES CEREVISIAE; STEADY STATE; STOP CODON; TRANSLATION REGULATION; WILD TYPE; YEAST;

FUNGAL PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; MODELS, GENETIC; PHENOTYPE; PROTEIN BINDING; PROTEIN BIOSYNTHESIS; RNA HELICASES; RNA STABILITY; RNA, FUNGAL; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SUBSTRATE SPECIFICITY; THIAMINE;

SACCHAROMYCES CEREVISIAE;

EID: 38049103286     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0709257105     Document Type: Article

References (31)

1. Jacobson A, Izaurralde E (2007) in Translational Control in Biology and Medicine, eds Mathews MB, Sonenberg N, Hershey JWB (Cold Spring Harbor Lab Press, Cold Spring Harbor, NY), pp 655-688.
2. Amrani N, Sachs MS, Jacobson A (2006) Nat Rev Mol Cell Biol 7:415-425.
3. He F, Li X, Spatrick P, Casillo R, Dong S, Jacobson A (2003) Mol Cell 12:1439-1452.
4. Lelivelt MJ, Culbertson MR (1999) Mol Cell Biol 19:6710-6719.
5. Mendell JT, Sharifi NA, Meyers JL, Martinez-Murillo F, Dietz HC (2004) Nat Genet 36:1073-1078.
6. Wittmann J, Hol EM, Jack HM (2006) Mol Cell Biol 26:1272-1287.
7. Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E (2005) RNA 11:1530-1544.
8. He F, Jacobson A (2006) in Nonsense-Mediated mRNA Decay, ed Maquat L (Landes Bioscience, Georgetown, TX), pp 27-41.
9. Rehwinkel J, Raes J, Izaurralde E (2006) Trends Biochem Sci 31:639-646.
10. Rodriguez-Gabriel MA, Watt S, Bahler J, Russell P (2006) Mol Cell Biol 26:6347-6356.
11. Guan Q, Zheng W, Tang S, Liu X, Zinkel RA, Tsui KW, Yandell BS, Culbertson MR (2006) PLoS Genet 2:e203.
12. Johns L, Grimson A, Kuchma SL, Newman CL, Anderson P (2007) Mol Cell Biol 27:5630-5638.
13. Muhlrad D, Parker R (1994) Nature 370:578-581.
14. Amrani N, Ganesan R, Kervestin S, Mangus DA, Ghosh S, Jacobson A (2004) Nature 432:112-118.
15. Maderazo AB, Belk JP, He F, Jacobson A (2003) Mol Cell Biol 23:842-851.
16. Gaba A, Jacobson A, Sachs MS (2005) Mol Cell 20:449-460.
17. Nonet M, Scafe C, Sexton J, Young R (1987) Mol Cell Biol 7:1602-1611.
18. Herrick D, Parker R, Jacobson A (1990) Mol Cell Biol 10:2269-2284.
19. Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, Ito T (2006) Proc Natl Acad Sci USA 103:17846-17851.
20. Struhl K (2007) Nat Struct Mol Biol 14:103-105.
21. Johnson JM, Edwards S, Shoemaker D, Schadt EE (2005) Trends Genet 21:93-102.
22. Willingham AT, Gingeras TR (2006) Cell 125:1215-1220.
23. David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L, Jones T, Davis RW, Steinmetz LM (2006) Proc Natl Acad Sci USA 103:5320-5325.
24. Thompson DM, Parker R (2007) Mol Cell Biol 27:92-101.
25. Enomoto S, Glowczewski L, Lew-Smith J, Berman JG (2004) Mol Cell Biol 24:837-845.
26. Grandin N, Reed SI, Charbonneau M (1997) Genes Dev 11:512-527.
27. Lustig AJ (2001) Nat Struct Biol 8:297-299.
28. Lew JE, Enomoto S, Berman J (1998) Mol Cell Biol 18:6121-6130.
29. Dahlseid JN, Lew-Smith J, Lelivelt MJ, Enomoto S, Ford A, Desruisseaux M, McClellan M, Lue N, Culbertson MR, Berman J (2003) Eukaryot Cell 2:134-142.
30. Gietz D, St Jean A, Woods RA, Schiestl RH (1992) Nucleic Acids Res 20:1425.
31. Amberg DC, Burke DJ, Strathern JN (2005) Methods in Yeast Genetics (Cold Spring Harbor Lab Press, Cold Spring Harbor, NY).