-
1
-
-
0032825494
-
Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome
-
Lelivelt MJ, Culbertson MR. 1999. Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome. Mol. Cell. Biol. 19:6710-6719.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 6710-6719
-
-
Lelivelt, M.J.1
Culbertson, M.R.2
-
2
-
-
33751375141
-
Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast
-
Guan Q, Zheng W, Tang S, Liu X, Zinkel RA, Tsui KW, Yandell BS, Culbertson MR. 2006. Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast. PLoS Genet. 2:e203. http: //dx.doi.org/10.1371/journal.pgen.0020203.
-
(2006)
PLoS Genet.
, vol.2
-
-
Guan, Q.1
Zheng, W.2
Tang, S.3
Liu, X.4
Zinkel, R.A.5
Tsui, K.W.6
Yandell, B.S.7
Culbertson, M.R.8
-
3
-
-
38049103286
-
Association of yeast Upf1p with direct substrates of the NMD pathway
-
Johansson MJ, He F, Spatrick P, Li C, Jacobson A. 2007. Association of yeast Upf1p with direct substrates of the NMD pathway. Proc. Natl. Acad. Sci. U. S. A. 104:20872-20877. http://dx.doi.org/10.1073/pnas. 0709257105.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 20872-20877
-
-
Johansson, M.J.1
He, F.2
Spatrick, P.3
Li, C.4
Jacobson, A.5
-
4
-
-
66249097064
-
Long 3=-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae
-
Kebaara BW, Atkin AL. 2009. Long 3=-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae. Nucleic Acids Res. 37:2771-2778. http://dx.doi.org/10.1093/nar/gkp146.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 2771-2778
-
-
Kebaara, B.W.1
Atkin, A.L.2
-
5
-
-
66049162655
-
Execution of nonsensemediated mRNA decay: What defines a substrate?
-
Rebbapragada I, Lykke-Andersen J. 2009. Execution of nonsensemediated mRNA decay: what defines a substrate? Curr. Opin. Cell Biol. 21:394-402. http://dx.doi.org/10.1016/j.ceb.2009.02.007.
-
(2009)
Curr. Opin. Cell Biol.
, vol.21
, pp. 394-402
-
-
Rebbapragada, I.1
Lykke-Andersen, J.2
-
6
-
-
0035137307
-
Upf1p, Nmd2p, and Upf3p regulate the decapping and exonucleolytic degradation of both nonsense-containing mRNAs and wild-type mRNAs
-
He F, Jacobson A. 2001. Upf1p, Nmd2p, and Upf3p regulate the decapping and exonucleolytic degradation of both nonsense-containing mRNAs and wild-type mRNAs. Mol. Cell. Biol. 21:1515-1530. http://dx. doi.org/10.1128/MCB.21.5.1515-1530.2001.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 1515-1530
-
-
He, F.1
Jacobson, A.2
-
7
-
-
0347416978
-
Genomewide analysis of mRNAs regulated by the nonsense-mediated and 5= to 3= mRNA decay pathways in yeast
-
He F, Li X, Spatrick P, Casillo R, Dong S, Jacobson A. 2003. Genomewide analysis of mRNAs regulated by the nonsense-mediated and 5= to 3= mRNA decay pathways in yeast. Mol. Cell 12:1439-1452. http://dx.doi. org/10.1016/S1097-2765(03)00446-5.
-
(2003)
Mol. Cell
, vol.12
, pp. 1439-1452
-
-
He, F.1
Li, X.2
Spatrick, P.3
Casillo, R.4
Dong, S.5
Jacobson, A.6
-
8
-
-
76349096255
-
High resolution transcriptome maps for wild-type and nonsensemediated decay-defective Caenorhabditis elegans
-
Ramani AK, Nelson AC, Kapranov P, Bell I, Gingeras TR, Fraser AG. 2009. High resolution transcriptome maps for wild-type and nonsensemediated decay-defective Caenorhabditis elegans. Genome Biol. 10: R101. http://dx.doi.org/10.1186/gb-2009-10-9-r101.
-
(2009)
Genome Biol.
, vol.10
-
-
Ramani, A.K.1
Nelson, A.C.2
Kapranov, P.3
Bell, I.4
Gingeras, T.R.5
Fraser, A.G.6
-
9
-
-
25844435702
-
NonsensemediatedmRNAdecay factors act in concert to regulate commonmRNA targets
-
Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E. 2005. NonsensemediatedmRNAdecay factors act in concert to regulate commonmRNA targets. RNA 11:1530-1544. http://dx.doi.org/10.1261/rna.2160905.
-
(2005)
RNA
, vol.11
, pp. 1530-1544
-
-
Rehwinkel, J.1
Letunic, I.2
Raes, J.3
Bork, P.4
Izaurralde, E.5
-
10
-
-
6944256813
-
Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
-
Mendell JT, Sharifi NA, Meyers JL, Martinez-Murillo F, Dietz HC. 2004. Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat. Genet. 36:1073- 1078. http://dx.doi.org/10.1038/ng1429.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1073-1078
-
-
Mendell, J.T.1
Sharifi, N.A.2
Meyers, J.L.3
Martinez-Murillo, F.4
Dietz, H.C.5
-
11
-
-
32044454232
-
hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay
-
Wittmann J, Hol EM, Jäck HM. 2006. hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay. Mol. Cell. Biol. 26:1272-1287. http://dx.doi.org/10.1128/MCB. 26.4.1272-1287.2006.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 1272-1287
-
-
Wittmann, J.1
Hol, E.M.2
Jäck, H.M.3
-
12
-
-
77953727819
-
Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts
-
Mekouar M, Blanc-Lenfle I, Ozanne C, Da Silva C, Cruaud C, Wincker P, Gaillardin C, Neuvéglise C. 2010. Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts. Genome Biol. 11:R65. http://dx.doi.org/10.1186/gb-2010-11-6-r65.
-
(2010)
Genome Biol.
, vol.11
-
-
Mekouar, M.1
Blanc-Lenfle, I.2
Ozanne, C.3
Da Silva, C.4
Cruaud, C.5
Wincker, P.6
Gaillardin, C.7
Neuvéglise, C.8
-
13
-
-
67650096774
-
Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival
-
Wittkopp N, Huntzinger E, Weiler C, Saulière J, Schmidt S, Sonawane M, Izaurralde E. 2009. Nonsense-mediated mRNA decay effectors are essential for zebrafish embryonic development and survival. Mol. Cell. Biol. 29:3517-3528. http://dx.doi.org/10.1128/MCB.00177-09.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 3517-3528
-
-
Wittkopp, N.1
Huntzinger, E.2
Weiler, C.3
Saulière, J.4
Schmidt, S.5
Sonawane, M.6
Izaurralde, E.7
-
14
-
-
33747784589
-
Upf1, an RNA helicase required for nonsense-mediated mRNA decay, modulates the transcriptional response to oxidative stress in fission yeast
-
Rodríguez-Gabriel MA, Watt S, Bähler J, Russell P. 2006. Upf1, an RNA helicase required for nonsense-mediated mRNA decay, modulates the transcriptional response to oxidative stress in fission yeast. Mol. Cell. Biol. 26:6347-6356. http://dx.doi.org/10.1128/MCB.00286-06.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 6347-6356
-
-
Rodríguez-Gabriel, M.A.1
Watt, S.2
Bähler, J.3
Russell, P.4
-
15
-
-
33751231132
-
Nonsense-mediated mRNA decay mutation in Aspergillus nidulans
-
Morozov IY, Negrete-Urtasun S, Tilburn J, Jansen CA, Caddick MX, Arst HN. 2006. Nonsense-mediated mRNA decay mutation in Aspergillus nidulans. Eukaryot. Cell 5:1838-1846. http://dx.doi.org/10.1128/EC. 00220-06.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 1838-1846
-
-
Morozov, I.Y.1
Negrete-Urtasun, S.2
Tilburn, J.3
Jansen, C.A.4
Caddick, M.X.5
Arst, H.N.6
-
16
-
-
0025786141
-
The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon
-
Leeds P, Peltz SW, Jacobson A, Culbertson MR. 1991. The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon. Genes Dev. 5:2303-2314. http://dx.doi.org/10.1101/gad.5.12a.2303.
-
(1991)
Genes Dev.
, vol.5
, pp. 2303-2314
-
-
Leeds, P.1
Peltz, S.W.2
Jacobson, A.3
Culbertson, M.R.4
-
17
-
-
0026773782
-
Gene products that promote mRNA turnover in Saccharomyces cerevisiae
-
Leeds P, Wood JM, Lee BS, Culbertson MR. 1992. Gene products that promote mRNA turnover in Saccharomyces cerevisiae. Mol. Cell. Biol. 12:2165-2177.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 2165-2177
-
-
Leeds, P.1
Wood, J.M.2
Lee, B.S.3
Culbertson, M.R.4
-
18
-
-
0031025296
-
Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway
-
He F, Brown AH, Jacobson A. 1997. Upf1p, Nmd2p, and Upf3p are interacting components of the yeast nonsense-mediated mRNA decay pathway. Mol. Cell. Biol. 17:1580-1594.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 1580-1594
-
-
He, F.1
Brown, A.H.2
Jacobson, A.3
-
19
-
-
0032771414
-
SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast
-
Page MF, Carr B, Anders KR, Grimson A, Anderson P. 1999. SMG-2 is a phosphorylated protein required for mRNA surveillance in Caenorhabditis elegans and related to Upf1p of yeast. Mol. Cell. Biol. 19:5943- 5951.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 5943-5951
-
-
Page, M.F.1
Carr, B.2
Anders, K.R.3
Grimson, A.4
Anderson, P.5
-
20
-
-
0037382643
-
Looking at mRNA decay pathways through the window of molecular evolution
-
Culbertson MR, Leeds PF. 2003. Looking at mRNA decay pathways through the window of molecular evolution. Curr. Opin. Genet. Dev. 13:207-214. http://dx.doi.org/10.1016/S0959-437X(03)00014-5.
-
(2003)
Curr. Opin. Genet. Dev.
, vol.13
, pp. 207-214
-
-
Culbertson, M.R.1
Leeds, P.F.2
-
21
-
-
77949904260
-
Nonsense-mediated mRNA decay in human cells: Mechanistic insights, functions beyond quality control and the double-life ofNMDfactors
-
Nicholson P, Yepiskoposyan H, Metze S, Zamudio Orozco R, Kleinschmidt N, Mühlemann O. 2010. Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life ofNMDfactors. Cell. Mol. Life Sci. 67:677-700. http://dx. doi.org/10.1007/s00018-009-0177-1.
-
(2010)
Cell. Mol. Life Sci.
, vol.67
, pp. 677-700
-
-
Nicholson, P.1
Yepiskoposyan, H.2
Metze, S.3
Zamudio Orozco, R.4
Kleinschmidt, N.5
Mühlemann, O.6
-
22
-
-
84867850145
-
NMD: A multifaceted response to premature translational termination
-
Kervestin S, Jacobson A. 2012. NMD: a multifaceted response to premature translational termination. Nat. Rev. Mol. Cell Biol. 13:700-712. http://dx.doi.org/10.1038/nrm3454.
-
(2012)
Nat. Rev. Mol. Cell Biol.
, vol.13
, pp. 700-712
-
-
Kervestin, S.1
Jacobson, A.2
-
23
-
-
8544253956
-
A faux 3=-UTR promotes aberrant termination and triggers nonsense- mediated mRNA decay
-
Amrani N, Ganesan R, Kervestin S, Mangus DA, Ghosh S, Jacobson A. 2004. A faux 3=-UTR promotes aberrant termination and triggers nonsense- mediated mRNA decay. Nature 432:112-118. http://dx.doi.org/10. 1038/nature03060.
-
(2004)
Nature
, vol.432
, pp. 112-118
-
-
Amrani, N.1
Ganesan, R.2
Kervestin, S.3
Mangus, D.A.4
Ghosh, S.5
Jacobson, A.6
-
24
-
-
0033835231
-
Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay
-
Bhattacharya A, Czaplinski K, Trifillis P, He F, Jacobson A, Peltz SW. 2000. Characterization of the biochemical properties of the human Upf1 gene product that is involved in nonsense-mediated mRNA decay. RNA 6:1226-1235. http://dx.doi.org/10.1017/S1355838200000546.
-
(2000)
RNA
, vol.6
, pp. 1226-1235
-
-
Bhattacharya, A.1
Czaplinski, K.2
Trifillis, P.3
He, F.4
Jacobson, A.5
Peltz, S.W.6
-
25
-
-
0029348072
-
Purification and characterization of the Upf1 protein: A factor involved in translation and mRNA degradation
-
Czaplinski K, Weng Y, Hagan KW, Peltz SW. 1995. Purification and characterization of the Upf1 protein: a factor involved in translation and mRNA degradation. RNA 1:610-623.
-
(1995)
RNA
, vol.1
, pp. 610-623
-
-
Czaplinski, K.1
Weng, Y.2
Hagan, K.W.3
Peltz, S.W.4
-
26
-
-
84891709077
-
Intra- and intermolecular regulatory interactions in Upf1, the RNA helicase central to nonsensemediated mRNA decay in yeast
-
He F, Ganesan R, Jacobson A. 2013. Intra- and intermolecular regulatory interactions in Upf1, the RNA helicase central to nonsensemediated mRNA decay in yeast. Mol. Cell. Biol. 33:4672-4684. http://dx. doi.org/10.1128/MCB.01136-13.
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 4672-4684
-
-
He, F.1
Ganesan, R.2
Jacobson, A.3
-
27
-
-
0029790557
-
Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnover
-
Weng Y, Czaplinski K, Peltz SW. 1996. Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnover. Mol. Cell. Biol. 16:5491-5506.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 5491-5506
-
-
Weng, Y.1
Czaplinski, K.2
Peltz, S.W.3
-
28
-
-
2642656314
-
The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs
-
Czaplinski K, Ruiz-Echevarria MJ, Paushkin SV, Han X, Weng Y, Perlick HA, Dietz HC, Ter-Avanesyan MD, Peltz SW. 1998. The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAs. Genes Dev. 12:1665- 1677. http://dx.doi.org/10.1101/gad.12.11.1665.
-
(1998)
Genes Dev.
, vol.12
, pp. 1665-1677
-
-
Czaplinski, K.1
Ruiz-Echevarria, M.J.2
Paushkin, S.V.3
Han, X.4
Weng, Y.5
Perlick, H.A.6
Dietz, H.C.7
Ter-Avanesyan, M.D.8
Peltz, S.W.9
-
29
-
-
12944327374
-
Mammalian Staufen1 recruits Upf1 to specific mRNA 3=UTRs so as to elicit mRNA decay
-
Kim YK, Furic L, Desgroseillers L, Maquat LE. 2005. Mammalian Staufen1 recruits Upf1 to specific mRNA 3=UTRs so as to elicit mRNA decay. Cell 120:195-208. http://dx.doi.org/10.1016/j.cell.2004.11.050.
-
(2005)
Cell
, vol.120
, pp. 195-208
-
-
Kim, Y.K.1
Furic, L.2
Desgroseillers, L.3
Maquat, L.E.4
-
30
-
-
26944503146
-
Regulated degradation of replicationdependent histone mRNAs requires both ATR and Upf1
-
Kaygun H, Marzluff WF. 2005. Regulated degradation of replicationdependent histone mRNAs requires both ATR and Upf1. Nat. Struct. Mol. Biol. 12:794-800. http://dx.doi.org/10.1038/nsmb972.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 794-800
-
-
Kaygun, H.1
Marzluff, W.F.2
-
31
-
-
80053615725
-
Human UPF1 interacts with TPP1 and telomerase and sustains telomere leading-strand replication
-
Chawla R, Redon S, Raftopoulou C, Wischnewski H, Gagos S, Azzalin CM. 2011. Human UPF1 interacts with TPP1 and telomerase and sustains telomere leading-strand replication. EMBO J. 30:4047-4058. http: //dx.doi.org/10.1038/emboj.2011.280.
-
(2011)
EMBO J.
, vol.30
, pp. 4047-4058
-
-
Chawla, R.1
Redon, S.2
Raftopoulou, C.3
Wischnewski, H.4
Gagos, S.5
Azzalin, C.M.6
-
32
-
-
33746261445
-
The double life of UPF1 in RNA and DNA stability pathways
-
Azzalin CM, Lingner J. 2006. The double life of UPF1 in RNA and DNA stability pathways. Cell Cycle 5:1496-1498. http://dx.doi.org/10.4161/cc. 5.14.3093.
-
(2006)
Cell Cycle
, vol.5
, pp. 1496-1498
-
-
Azzalin, C.M.1
Lingner, J.2
-
33
-
-
32544439098
-
Aberrant termination triggers nonsense-mediated mRNA decay
-
Amrani N, Dong S, He F, Ganesan R, Ghosh S, Kervestin S, Li C, Mangus DA, Spatrick P, Jacobson A. 2006. Aberrant termination triggers nonsense-mediated mRNA decay. Biochem. Soc. Trans. 34:39-42. http://dx.doi.org/10.1042/BST0340039.
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 39-42
-
-
Amrani, N.1
Dong, S.2
He, F.3
Ganesan, R.4
Ghosh, S.5
Kervestin, S.6
Li, C.7
Mangus, D.A.8
Spatrick, P.9
Jacobson, A.10
-
34
-
-
81755172088
-
Autoregulation of the nonsense-mediated mRNA decay pathway in human cells
-
Yepiskoposyan H, Aeschimann F, Nilsson D, Okoniewski M, Mühlemann O. 2011. Autoregulation of the nonsense-mediated mRNA decay pathway in human cells. RNA 17:2108-2118. http://dx.doi.org/10.1261 /rna.030247.111.
-
(2011)
RNA
, vol.17
, pp. 2108-2118
-
-
Yepiskoposyan, H.1
Aeschimann, F.2
Nilsson, D.3
Okoniewski, M.4
Mühlemann, O.5
-
35
-
-
43249093760
-
Posttranscriptional gene regulation by spatial rearrangement of the 3= untranslated region
-
Eberle AB, Stalder L, Mathys H, Orozco RZ, Mühlemann O. 2008. Posttranscriptional gene regulation by spatial rearrangement of the 3= untranslated region. PLoS Biol. 6:e92. http://dx.doi.org/10.1371/journal. pbio.0060092.
-
(2008)
PLoS Biol.
, vol.6
-
-
Eberle, A.B.1
Stalder, L.2
Mathys, H.3
Orozco, R.Z.4
Mühlemann, O.5
-
36
-
-
43249084802
-
A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay
-
Singh G, Rebbapragada I, Lykke-Andersen J. 2008. A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. PLoS Biol. 6:e111. http: //dx.doi.org/10.1371/journal.pbio.0060111.
-
(2008)
PLoS Biol.
, vol.6
-
-
Singh, G.1
Rebbapragada, I.2
Lykke-Andersen, J.3
-
37
-
-
0038402506
-
Computational modeling and experimental analysis of nonsense-mediated decay in yeast
-
Cao D, Parker R. 2003. Computational modeling and experimental analysis of nonsense-mediated decay in yeast. Cell 113:533-545. http: //dx.doi.org/10.1016/S0092-8674(03)00353-2.
-
(2003)
Cell
, vol.113
, pp. 533-545
-
-
Cao, D.1
Parker, R.2
-
38
-
-
38149035044
-
Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail
-
Meaux S, van Hoof A, Baker KE. 2008. Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail. Mol. Cell 29:134- 140. http://dx.doi.org/10.1016/j.molcel.2007.10.031.
-
(2008)
Mol. Cell
, vol.29
, pp. 134-140
-
-
Meaux, S.1
van Hoof, A.2
Baker, K.E.3
-
39
-
-
84888617099
-
Organizing principles of mammalian nonsense-mediated mRNA decay
-
Popp MW, Maquat LE. 2013. Organizing principles of mammalian nonsense-mediated mRNA decay. Annu. Rev. Genet. 47:139-165. http: //dx.doi.org/10.1146/annurev-genet-111212-133424.
-
(2013)
Annu. Rev. Genet.
, vol.47
, pp. 139-165
-
-
Popp, M.W.1
Maquat, L.E.2
-
40
-
-
0035125142
-
mRNA quality control: Marking the message for life or death
-
Lykke-Andersen J. 2001. mRNA quality control: marking the message for life or death. Curr. Biol. 11:R88-R91. http://dx.doi.org/10.1016 /S0960-9822(01)00036-7.
-
(2001)
Curr. Biol.
, vol.11
, pp. R88-R91
-
-
Lykke-Andersen, J.1
-
41
-
-
0035823036
-
Evidence for a pioneer round of mRNA translation: MRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20
-
Ishigaki Y, Li X, Serin G, Maquat LE. 2001. Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20. Cell 106:607- 617. http://dx.doi.org/10.1016/S0092-8674(01)00475-5.
-
(2001)
Cell
, vol.106
, pp. 607-617
-
-
Ishigaki, Y.1
Li, X.2
Serin, G.3
Maquat, L.E.4
-
42
-
-
84884692094
-
Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways
-
Metze S, Herzog VA, Ruepp MD, Mühlemann O. 2013. Comparison of EJC-enhanced and EJC-independent NMD in human cells reveals two partially redundant degradation pathways.RNA19:1432-1448. http://dx. doi.org/10.1261/rna.038893.113.
-
(2013)
RNA
, vol.19
, pp. 1432-1448
-
-
Metze, S.1
Herzog, V.A.2
Ruepp, M.D.3
Mühlemann, O.4
-
43
-
-
33744994837
-
EJC-independent degradation of nonsense immunoglobulin-mumRNA depends on 3= UTR length
-
Bühler M, Steiner S, Mohn F, Paillusson A, Mühlemann O. 2006. EJC-independent degradation of nonsense immunoglobulin-mumRNA depends on 3= UTR length. Nat. Struct. Mol. Biol. 13:462-464. http://dx. doi.org/10.1038/nsmb1081.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 462-464
-
-
Bühler, M.1
Steiner, S.2
Mohn, F.3
Paillusson, A.4
Mühlemann, O.5
-
44
-
-
84878916831
-
eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells
-
Rufener SC, Mühlemann O. 2013. eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells. Nat. Struct. Mol. Biol. 20:710-717. http://dx.doi.org/10.1038/nsmb.2576.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 710-717
-
-
Rufener, S.C.1
Mühlemann, O.2
-
45
-
-
84878945009
-
Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells
-
Durand S, Lykke-Andersen J. 2013. Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells. Nat. Struct. Mol. Biol. 20:702-709. http://dx.doi.org/10.1038/nsmb.2575.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 702-709
-
-
Durand, S.1
Lykke-Andersen, J.2
-
46
-
-
0033679905
-
The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay
-
González CI, Ruiz-Echevarría MJ, Vasudevan S, Henry MF, Peltz SW. 2000. The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay. Mol. Cell 5:489-499. http://dx.doi. org/10.1016/S1097-2765(00)80443-8.
-
(2000)
Mol. Cell
, vol.5
, pp. 489-499
-
-
González, C.I.1
Ruiz-Echevarría, M.J.2
Vasudevan, S.3
Henry, M.F.4
Peltz, S.W.5
-
47
-
-
0035934166
-
Nonsensemediated mRNA decay in Saccharomyces cerevisiae
-
González CI, Bhattacharya A, Wang W, Peltz SW. 2001. Nonsensemediated mRNA decay in Saccharomyces cerevisiae. Gene 274:15-25. http://dx.doi.org/10.1016/S0378-1119(01)00552-2.
-
(2001)
Gene
, vol.274
, pp. 15-25
-
-
González, C.I.1
Bhattacharya, A.2
Wang, W.3
Peltz, S.W.4
-
48
-
-
0037304372
-
Nonsense-containing mRNAs that accumulate in the absence of a functional nonsensemediated mRNA decay pathway are destabilized rapidly upon its restitution
-
Maderazo AB, Belk JP, He F, Jacobson A. 2003. Nonsense-containing mRNAs that accumulate in the absence of a functional nonsensemediated mRNA decay pathway are destabilized rapidly upon its restitution. Mol. Cell. Biol. 23:842-851. http://dx.doi.org/10.1128/MCB.23. 3.842-851.2003.
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 842-851
-
-
Maderazo, A.B.1
Belk, J.P.2
He, F.3
Jacobson, A.4
-
49
-
-
74549134095
-
How and where are nonsense mRNAs degraded in mammalian cells?
-
Mühlemann O, Lykke-Andersen J. 2010. How and where are nonsense mRNAs degraded in mammalian cells? RNA Biol. 7:28-32. http://dx.doi. org/10.4161/rna.7.1.10578.
-
(2010)
RNA Biol.
, vol.7
, pp. 28-32
-
-
Mühlemann, O.1
Lykke-Andersen, J.2
-
50
-
-
27644520989
-
Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense- mediated mRNA decay
-
Gaba A, Jacobson A, Sachs MS. 2005. Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense- mediated mRNA decay. Mol. Cell 20:449-460. http://dx.doi.org /10.1016/j.molcel.2005.09.019.
-
(2005)
Mol. Cell
, vol.20
, pp. 449-460
-
-
Gaba, A.1
Jacobson, A.2
Sachs, M.S.3
-
51
-
-
0027242173
-
Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1-mutant
-
He F, Peltz SW, Donahue JL, Rosbash M, Jacobson A. 1993. Stabilization and ribosome association of unspliced pre-mRNAs in a yeast upf1-mutant. Proc. Natl. Acad. Sci. U. S. A. 90:7034-7038. http://dx.doi. org/10.1073/pnas.90.15.7034.
-
(1993)
Proc. Natl. Acad. Sci. U. S. A.
, vol.90
, pp. 7034-7038
-
-
He, F.1
Peltz, S.W.2
Donahue, J.L.3
Rosbash, M.4
Jacobson, A.5
-
52
-
-
0033229867
-
An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA
-
Welch EM, Jacobson A. 1999. An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA. EMBO J. 18:6134- 6145. http://dx.doi.org/10.1093/emboj/18.21.6134.
-
(1999)
EMBO J.
, vol.18
, pp. 6134-6145
-
-
Welch, E.M.1
Jacobson, A.2
-
53
-
-
84863869059
-
RNA degradation in Saccharomyces cerevisae
-
Parker R. 2012. RNA degradation in Saccharomyces cerevisae. Genetics 191:671-702. http://dx.doi.org/10.1534/genetics.111.137265.
-
(2012)
Genetics
, vol.191
, pp. 671-702
-
-
Parker, R.1
-
54
-
-
84877818178
-
Nonsense-mediated mRNA decay-mechanisms of substrate mRNA recognition and degradation in mammalian cells
-
Schweingruber C, Rufener SC, Zünd D, Yamashita A, Mühlemann O. 2013. Nonsense-mediated mRNA decay-mechanisms of substrate mRNA recognition and degradation in mammalian cells. Biochim. Biophys. Acta 1829:612-623. http://dx.doi.org/10.1016/j.bbagrm.2013.02. 005.
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 612-623
-
-
Schweingruber, C.1
Rufener, S.C.2
Zünd, D.3
Yamashita, A.4
Mühlemann, O.5
-
55
-
-
0034705289
-
The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames
-
Ruiz-Echevarría MJ, Peltz SW. 2000. The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames. Cell 101:741-751. http://dx.doi.org/10.1016/S0092-8674(00)80886-7.
-
(2000)
Cell
, vol.101
, pp. 741-751
-
-
Ruiz-Echevarría, M.J.1
Peltz, S.W.2
-
56
-
-
48349096177
-
Widespread impact of nonsense-mediated mRNA decay on the yeast intronome
-
Sayani S, Janis M, Lee CY, Toesca I, Chanfreau GF. 2008. Widespread impact of nonsense-mediated mRNA decay on the yeast intronome. Mol. Cell 31:360-370. http://dx.doi.org/10.1016/j.molcel.2008.07.005.
-
(2008)
Mol. Cell
, vol.31
, pp. 360-370
-
-
Sayani, S.1
Janis, M.2
Lee, C.Y.3
Toesca, I.4
Chanfreau, G.F.5
-
57
-
-
84864063925
-
Sequential RNA degradation pathways provide a fail-safe mechanism to limit the accumulation of unspliced transcripts in Saccharomyces cerevisiae
-
Sayani S, Chanfreau GF. 2012. Sequential RNA degradation pathways provide a fail-safe mechanism to limit the accumulation of unspliced transcripts in Saccharomyces cerevisiae. RNA 18:1563-1572. http://dx. doi.org/10.1261/rna.033779.112.
-
(2012)
RNA
, vol.18
, pp. 1563-1572
-
-
Sayani, S.1
Chanfreau, G.F.2
-
58
-
-
33846811598
-
High-density yeasttiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing
-
Juneau K, Palm C, Miranda M, Davis RW. 2007. High-density yeasttiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing. Proc. Natl. Acad. Sci. U. S. A. 104:1522-1527. http://dx.doi.org/10.1073/pnas.0610354104.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 1522-1527
-
-
Juneau, K.1
Palm, C.2
Miranda, M.3
Davis, R.W.4
-
59
-
-
84901326918
-
Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae
-
Kawashima T, Douglass S, Gabunilas J, Pellegrini M, Chanfreau GF. 2014. Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae. PLoS Genet. 10:e1004249. http://dx.doi.org/10. 1371/journal.pgen.1004249.
-
(2014)
PLoS Genet.
, vol.10
-
-
Kawashima, T.1
Douglass, S.2
Gabunilas, J.3
Pellegrini, M.4
Chanfreau, G.F.5
-
60
-
-
67651233776
-
Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila
-
Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE. 2009. Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. PLoS Genet. 5:e1000525. http://dx.doi.org/10.1371/journal.pgen.1000525.
-
(2009)
PLoS Genet.
, vol.5
-
-
Hansen, K.D.1
Lareau, L.F.2
Blanchette, M.3
Green, R.E.4
Meng, Q.5
Rehwinkel, J.6
Gallusser, F.L.7
Izaurralde, E.8
Rio, D.C.9
Dudoit, S.10
Brenner, S.E.11
-
61
-
-
0033856880
-
Unproductively spliced ribosomal protein mRNAs are natural targets of mRNA surveillance in C. Elegans
-
Mitrovich QM, Anderson P. 2000. Unproductively spliced ribosomal protein mRNAs are natural targets of mRNA surveillance in C. elegans. Genes Dev. 14:2173-2184. http://dx.doi.org/10.1101/gad.819900.
-
(2000)
Genes Dev.
, vol.14
, pp. 2173-2184
-
-
Mitrovich, Q.M.1
Anderson, P.2
-
62
-
-
84861333042
-
Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns
-
Weischenfeldt J, Waage J, Tian G, Zhao J, Damgaard I, Jakobsen JS, Kristiansen K, Krogh A, Wang J, Porse BT. 2012. Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns. Genome Biol. 13:R35. http://dx.doi.org/10.1186/gb -2012-13-5-r35.
-
(2012)
Genome Biol.
, vol.13
-
-
Weischenfeldt, J.1
Waage, J.2
Tian, G.3
Zhao, J.4
Damgaard, I.5
Jakobsen, J.S.6
Kristiansen, K.7
Krogh, A.8
Wang, J.9
Porse, B.T.10
-
63
-
-
46149112362
-
Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay
-
Saltzman AL, Kim YK, Pan Q, Fagnani MM, Maquat LE, Blencowe BJ. 2008. Regulation of multiple core spliceosomal proteins by alternative splicing-coupled nonsense-mediated mRNA decay. Mol. Cell. Biol. 28: 4320-4330. http://dx.doi.org/10.1128/MCB.00361-08.
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 4320-4330
-
-
Saltzman, A.L.1
Kim, Y.K.2
Pan, Q.3
Fagnani, M.M.4
Maquat, L.E.5
Blencowe, B.J.6
-
64
-
-
50649109231
-
Genome-wide analyses of alternative splicing in plants: Opportunities and challenges
-
Barbazuk WB, Fu Y, McGinnis KM. 2008. Genome-wide analyses of alternative splicing in plants: opportunities and challenges. Genome Res. 18:1381-1392. http://dx.doi.org/10.1101/gr.053678.106.
-
(2008)
Genome Res.
, vol.18
, pp. 1381-1392
-
-
Barbazuk, W.B.1
Fu, Y.2
McGinnis, K.M.3
-
65
-
-
33845622065
-
Both introns and long 3=-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
-
Kertész S, Kerényi Z, Mérai Z, Bartos I, Pálfy T, Barta E, Silhavy D. 2006. Both introns and long 3=-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res. 34:6147- 6157. http://dx.doi.org/10.1093/nar/gkl737.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 6147-6157
-
-
Kertész, S.1
Kerényi, Z.2
Mérai, Z.3
Bartos, I.4
Pálfy, T.5
Barta, E.6
Silhavy, D.7
-
66
-
-
44649127573
-
Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay
-
Kerényi Z, Mérai Z, Hiripi L, Benkovics A, Gyula P, Lacomme C, Barta E, Nagy F, Silhavy D. 2008. Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. EMBO J. 27:1585-1595. http://dx.doi.org/10.1038/emboj.2008.88.
-
(2008)
EMBO J.
, vol.27
, pp. 1585-1595
-
-
Kerényi, Z.1
Mérai, Z.2
Hiripi, L.3
Benkovics, A.4
Gyula, P.5
Lacomme, C.6
Barta, E.7
Nagy, F.8
Silhavy, D.9
-
67
-
-
84880534583
-
Plant nonsensemediated mRNA decay is controlled by different autoregulatory circuits and can be induced by an EJC-like complex
-
Nyikó T, Kerényi F, Szabadkai L, Benkovics AH, Major P, Sonkoly B, Mérai Z, Barta E, Niemiec E, Kufel J, Silhavy D. 2013. Plant nonsensemediated mRNA decay is controlled by different autoregulatory circuits and can be induced by an EJC-like complex. Nucleic Acids Res. 41:6715- 6728. http://dx.doi.org/10.1093/nar/gkt366.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 6715-6728
-
-
Nyikó, T.1
Kerényi, F.2
Szabadkai, L.3
Benkovics, A.H.4
Major, P.5
Sonkoly, B.6
Mérai, Z.7
Barta, E.8
Niemiec, E.9
Kufel, J.10
Silhavy, D.11
-
68
-
-
38349125022
-
Translational control of intron splicing in eukaryotes
-
Jaillon O, Bouhouche K, Gout JF, Aury JM, Noel B, Saudemont B, Nowacki M, Serrano V, Porcel BM, Ségurens B, Le Mouël A, Lepère G, Schächter V, Bétermier M, Cohen J, Wincker P, Sperling L, Duret L, Meyer E. 2008. Translational control of intron splicing in eukaryotes. Nature 451:359-362. http://dx.doi.org/10.1038/nature06495.
-
(2008)
Nature
, vol.451
, pp. 359-362
-
-
Jaillon, O.1
Bouhouche, K.2
Gout, J.F.3
Aury, J.M.4
Noel, B.5
Saudemont, B.6
Nowacki, M.7
Serrano, V.8
Porcel, B.M.9
Ségurens, B.10
Le Mouël, A.11
Lepère, G.12
Schächter, V.13
Bétermier, M.14
Cohen, J.15
Wincker, P.16
Sperling, L.17
Duret, L.18
Meyer, E.19
-
69
-
-
0037089139
-
Probabilistic prediction of Saccharomyces cerevisiae mRNA 3=-processing sites
-
Graber JH, McAllister GD, Smith TF. 2002. Probabilistic prediction of Saccharomyces cerevisiae mRNA 3=-processing sites. Nucleic Acids Res. 30:1851-1858. http://dx.doi.org/10.1093/nar/30.8.1851.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1851-1858
-
-
Graber, J.H.1
McAllister, G.D.2
Smith, T.F.3
-
70
-
-
82455212260
-
Copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants
-
Deliz-Aguirre R, Atkin AL, Kebaara BW. 2011. Copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants. Curr. Genet. 57:421-430. http://dx.doi.org/10.1007/s00294-011-0356-0.
-
(2011)
Curr. Genet.
, vol.57
, pp. 421-430
-
-
Deliz-Aguirre, R.1
Atkin, A.L.2
Kebaara, B.W.3
-
71
-
-
33846388539
-
Alternative 3= pre-mRNA processing in Saccharomyces cerevisiae is modulated by Nab4/Hrp1 in vivo
-
Kim Guisbert KS, Li H, Guthrie C. 2007. Alternative 3= pre-mRNA processing in Saccharomyces cerevisiae is modulated by Nab4/Hrp1 in vivo. PLoS Biol. 5:e6. http://dx.doi.org/10.1371/journal.pbio.0050006.
-
(2007)
PLoS Biol.
, vol.5
-
-
Kim Guisbert, K.S.1
Li, H.2
Guthrie, C.3
-
72
-
-
84894131718
-
Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast
-
Geisberg JV, Moqtaderi Z, Fan X, Ozsolak F, Struhl K. 2014. Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast. Cell 156:812-824. http://dx.doi.org/10.1016/j.cell. 2013.12.026.
-
(2014)
Cell
, vol.156
, pp. 812-824
-
-
Geisberg, J.V.1
Moqtaderi, Z.2
Fan, X.3
Ozsolak, F.4
Struhl, K.5
-
73
-
-
84885069820
-
Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay
-
Hurt JA, Robertson AD, Burge CB. 2013. Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay. Genome Res. 23:1636-1650. http://dx.doi.org/10.1101/gr. 157354.113.
-
(2013)
Genome Res.
, vol.23
, pp. 1636-1650
-
-
Hurt, J.A.1
Robertson, A.D.2
Burge, C.B.3
-
74
-
-
84884935892
-
DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans
-
Longman D, Hug N, Keith M, Anastasaki C, Patton EE, Grimes G, Cáceres JF. 2013. DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans. Nucleic Acids Res. 41:8319-8331. http://dx.doi.org/10.1093/nar/gkt585.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 8319-8331
-
-
Longman, D.1
Hug, N.2
Keith, M.3
Anastasaki, C.4
Patton, E.E.5
Grimes, G.6
Cáceres, J.F.7
-
75
-
-
84859293997
-
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
-
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol J, Dinh HQ, Barta A, Brown JW. 2012. Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res. 40:2454-2469. http://dx.doi.org/10.1093/nar/gkr932.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 2454-2469
-
-
Kalyna, M.1
Simpson, C.G.2
Syed, N.H.3
Lewandowska, D.4
Marquez, Y.5
Kusenda, B.6
Marshall, J.7
Fuller, J.8
Cardle, L.9
McNicol, J.10
Dinh, H.Q.11
Barta, A.12
Brown, J.W.13
-
76
-
-
84878730100
-
Roles for transcript leaders in translation and mRNA decay revealed by transcript leader sequencing
-
Arribere JA, Gilbert WV. 2013. Roles for transcript leaders in translation and mRNA decay revealed by transcript leader sequencing. Genome Res. 23:977-987. http://dx.doi.org/10.1101/gr.150342.112.
-
(2013)
Genome Res.
, vol.23
, pp. 977-987
-
-
Arribere, J.A.1
Gilbert, W.V.2
-
77
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. 2008. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320:1344-1349. http://dx.doi.org /10.1126/science.1158441.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
78
-
-
77954856723
-
Nonsense-mediated mRNA decay maintains translational fidelity by limiting magnesium uptake
-
Johansson MJ, Jacobson A. 2010. Nonsense-mediated mRNA decay maintains translational fidelity by limiting magnesium uptake. Genes Dev. 24:1491-1495. http://dx.doi.org/10.1101/gad.1930710.
-
(2010)
Genes Dev.
, vol.24
, pp. 1491-1495
-
-
Johansson, M.J.1
Jacobson, A.2
-
79
-
-
66149118241
-
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
-
Calvo SE, Pagliarini DJ, Mootha VK. 2009. Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. Proc. Natl. Acad. Sci. U. S. A. 106:7507-7512. http://dx.doi.org/10.1073/pnas.0810916106.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 7507-7512
-
-
Calvo, S.E.1
Pagliarini, D.J.2
Mootha, V.K.3
-
80
-
-
33646832403
-
The uORF-containing thrombopoietin mRNA escapes nonsense-mediated decay (NMD)
-
Stockklausner C, Breit S, Neu-Yilik G, Echner N, Hentze MW, Kulozik AE, Gehring NH. 2006. The uORF-containing thrombopoietin mRNA escapes nonsense-mediated decay (NMD). Nucleic Acids Res. 34:2355- 2363. http://dx.doi.org/10.1093/nar/gkl277.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2355-2363
-
-
Stockklausner, C.1
Breit, S.2
Neu-Yilik, G.3
Echner, N.4
Hentze, M.W.5
Kulozik, A.E.6
Gehring, N.H.7
-
81
-
-
70350216071
-
Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a sizedependent manner
-
Nyikó T, Sonkoly B, Mérai Z, Benkovics AH, Silhavy D. 2009. Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a sizedependent manner. Plant Mol. Biol. 71:367-378. http://dx.doi.org/10. 1007/s11103-009-9528-4.
-
(2009)
Plant Mol. Biol.
, vol.71
, pp. 367-378
-
-
Nyikó, T.1
Sonkoly, B.2
Mérai, Z.3
Benkovics, A.H.4
Silhavy, D.5
-
82
-
-
0036651439
-
Context organization of mRNA 5=-untranslated regions of higher plants
-
(In Russian.)
-
Kochetov AV, Syrnik OA, Rogozin IB, Glazko GV, Komarova ML, Shumnyi VK. 2002. Context organization of mRNA 5=-untranslated regions of higher plants. Mol. Biol. (Mosk) 36:649-656. (In Russian.)
-
(2002)
Mol. Biol. (Mosk)
, vol.36
, pp. 649-656
-
-
Kochetov, A.V.1
Syrnik, O.A.2
Rogozin, I.B.3
Glazko, G.V.4
Komarova, M.L.5
Shumnyi, V.K.6
-
83
-
-
79954611142
-
Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast
-
Belew AT, Advani VM, Dinman JD. 2011. Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast. Nucleic Acids Res. 39:2799-2808. http://dx.doi.org/10.1093/nar/gkq1220.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2799-2808
-
-
Belew, A.T.1
Advani, V.M.2
Dinman, J.D.3
-
84
-
-
0023663451
-
Compilation and comparison of the sequence context around the AUG start codons in Saccharomyces cerevisiae mRNAs
-
Hamilton R, Watanabe CK, de Boer HA. 1987. Compilation and comparison of the sequence context around the AUG start codons in Saccharomyces cerevisiae mRNAs. Nucleic Acids Res. 15:3581-3593. http://dx.doi.org/10.1093/nar/15.8.3581.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 3581-3593
-
-
Hamilton, R.1
Watanabe, C.K.2
de Boer, H.A.3
-
85
-
-
33750356583
-
Nonsense-mediated mRNA decay: Target genes and functional diversification of effectors
-
Rehwinkel J, Raes J, Izaurralde E. 2006. Nonsense-mediated mRNA decay: target genes and functional diversification of effectors. Trends Biochem. Sci. 31:639-646. http://dx.doi.org/10.1016/j.tibs.2006.09.005.
-
(2006)
Trends Biochem. Sci.
, vol.31
, pp. 639-646
-
-
Rehwinkel, J.1
Raes, J.2
Izaurralde, E.3
-
86
-
-
0026539509
-
NAM7 nuclear gene encodes a novel member of a family of helicases with a Zn-ligand motif and is involved in mitochondrial functions in Saccharomyces cerevisiae
-
Altamura N, Groudinsky O, Dujardin G, Slonimski PP. 1992. NAM7 nuclear gene encodes a novel member of a family of helicases with a Zn-ligand motif and is involved in mitochondrial functions in Saccharomyces cerevisiae. J. Mol. Biol. 224:575-587. http://dx.doi.org/10.1016 /0022-2836(92)90545-U.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 575-587
-
-
Altamura, N.1
Groudinsky, O.2
Dujardin, G.3
Slonimski, P.P.4
-
87
-
-
29144442090
-
Gene set coregulated by the Saccharomyces cerevisiae nonsense-mediated mRNA decay pathway
-
Taylor R, Kebaara BW, Nazarenus T, Jones A, Yamanaka R, Uhrenholdt R, Wendler JP, Atkin AL. 2005. Gene set coregulated by the Saccharomyces cerevisiae nonsense-mediated mRNA decay pathway. Eukaryot. Cell 4:2066-2077. http://dx.doi.org/10.1128/EC.4.12.2066 -2077.2005.
-
(2005)
Eukaryot. Cell
, vol.4
, pp. 2066-2077
-
-
Taylor, R.1
Kebaara, B.W.2
Nazarenus, T.3
Jones, A.4
Yamanaka, R.5
Uhrenholdt, R.6
Wendler, J.P.7
Atkin, A.L.8
-
88
-
-
84877925710
-
Physiological basis of copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants
-
Wang X, Okonkwo O, Kebaara BW. 2013. Physiological basis of copper tolerance of Saccharomyces cerevisiae nonsense-mediated mRNA decay mutants. Yeast 30:179-190. http://dx.doi.org/10.1002/yea.2950.
-
(2013)
Yeast
, vol.30
, pp. 179-190
-
-
Wang, X.1
Okonkwo, O.2
Kebaara, B.W.3
-
89
-
-
11144247945
-
Mobilization of intracellular copper stores by the ctr2 vacuolar copper transporter
-
Rees EM, Lee J, Thiele DJ. 2004. Mobilization of intracellular copper stores by the ctr2 vacuolar copper transporter. J. Biol. Chem. 279:54221- 54229. http://dx.doi.org/10.1074/jbc.M411669200.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 54221-54229
-
-
Rees, E.M.1
Lee, J.2
Thiele, D.J.3
-
90
-
-
0024444026
-
A new kind of informational suppression in the nematode Caenorhabditis elegans
-
Hodgkin J, Papp A, Pulak R, Ambros V, Anderson P. 1989. A new kind of informational suppression in the nematode Caenorhabditis elegans. Genetics 123:301-313.
-
(1989)
Genetics
, vol.123
, pp. 301-313
-
-
Hodgkin, J.1
Papp, A.2
Pulak, R.3
Ambros, V.4
Anderson, P.5
-
91
-
-
33745817833
-
UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis
-
Arciga-Reyes L, Wootton L, Kieffer M, Davies B. 2006. UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J. 47:480-489. http://dx.doi.org/10.1111/j.1365-313X. 2006.02802.x.
-
(2006)
Plant J.
, vol.47
, pp. 480-489
-
-
Arciga-Reyes, L.1
Wootton, L.2
Kieffer, M.3
Davies, B.4
-
92
-
-
84857478172
-
A role for nonsense-mediated mRNA decay in plants: Pathogen responses are induced in Arabidopsis thaliana NMD mutants
-
Rayson S, Arciga-Reyes L, Wootton L, De Torres Zabala M, Truman W, Graham N, Grant M, Davies B. 2012. A role for nonsense-mediated mRNA decay in plants: pathogen responses are induced in Arabidopsis thaliana NMD mutants. PLoS One 7:e31917. http://dx.doi.org/10.1371 /journal.pone.0031917.
-
(2012)
PLoS One
, vol.7
-
-
Rayson, S.1
Arciga-Reyes, L.2
Wootton, L.3
De Torres Zabala, M.4
Truman, W.5
Graham, N.6
Grant, M.7
Davies, B.8
-
93
-
-
33846015866
-
Functions of the nonsense- mediated mRNA decay pathway in Drosophila development
-
Metzstein MM, Krasnow MA. 2006. Functions of the nonsense- mediated mRNA decay pathway in Drosophila development. PLoS Genet. 2:e180. http://dx.doi.org/10.1371/journal.pgen.0020180.
-
(2006)
PLoS Genet.
, vol.2
-
-
Metzstein, M.M.1
Krasnow, M.A.2
-
94
-
-
0035862813
-
Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability
-
Medghalchi SM, Frischmeyer PA, Mendell JT, Kelly AG, Lawler AM, Dietz HC. 2001. Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability. Hum. Mol. Genet. 10:99-105. http://dx.doi.org/10.1093/hmg/10.2.99.
-
(2001)
Hum. Mol. Genet.
, vol.10
, pp. 99-105
-
-
Medghalchi, S.M.1
Frischmeyer, P.A.2
Mendell, J.T.3
Kelly, A.G.4
Lawler, A.M.5
Dietz, H.C.6
-
95
-
-
44149104364
-
NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements
-
Weischenfeldt J, Damgaard I, Bryder D, Theilgaard-Mönch K, Thoren LA, Nielsen FC, Jacobsen SE, Nerlov C, Porse BT. 2008. NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements. Genes Dev. 22: 1381-1396. http://dx.doi.org/10.1101/gad.468808.
-
(2008)
Genes Dev.
, vol.22
, pp. 1381-1396
-
-
Weischenfeldt, J.1
Damgaard, I.2
Bryder, D.3
Theilgaard-Mönch, K.4
Thoren, L.A.5
Nielsen, F.C.6
Jacobsen, S.E.7
Nerlov, C.8
Porse, B.T.9
-
97
-
-
33746224027
-
Applying nonsense-mediated mRNA decay research to the clinic: Progress and challenges
-
Kuzmiak HA, Maquat LE. 2006. Applying nonsense-mediated mRNA decay research to the clinic: progress and challenges. Trends Mol. Med. 12:306-316. http://dx.doi.org/10.1016/j.molmed.2006.05.005.
-
(2006)
Trends Mol. Med.
, vol.12
, pp. 306-316
-
-
Kuzmiak, H.A.1
Maquat, L.E.2
-
98
-
-
54849413018
-
Introducing sense into nonsense in treatments of human genetic diseases
-
Linde L, Kerem B. 2008. Introducing sense into nonsense in treatments of human genetic diseases. Trends Genet. 24:552-563. http://dx.doi.org /10.1016/j.tig.2008.08.010.
-
(2008)
Trends Genet.
, vol.24
, pp. 552-563
-
-
Linde, L.1
Kerem, B.2
-
99
-
-
84909642803
-
Nonsense-mediated mRNA decay: Inter-individual variability and human disease
-
(13)00270-4
-
Nguyen LS, Wilkinson MF, Gecz J. 2013. Nonsense-mediated mRNA decay: inter-individual variability and human disease. Neurosci. Biobehav. Rev. 2013:S0149-7634(13)00270-4. http://dx.doi.org/10.1016/j. neubiorev.2013.10.016.
-
(2013)
Neurosci. Biobehav. Rev.
, vol.2013
, pp. S0149-S7634
-
-
Nguyen, L.S.1
Wilkinson, M.F.2
Gecz, J.3
-
100
-
-
79951814161
-
A novel frameshift mutation in UPF3B identified in brothers affected with childhood onset schizophrenia and autism spectrum disorders
-
Addington AM, Gauthier J, Piton A, Hamdan FF, Raymond A, Gogtay N, Miller R, Tossell J, Bakalar J, Inoff-Germain G, Germain G, Gochman P, Long R, Rapoport JL, Rouleau GA. 2011. A novel frameshift mutation in UPF3B identified in brothers affected with childhood onset schizophrenia and autism spectrum disorders. Mol. Psychiatry 16:238- 239. http://dx.doi.org/10.1038/mp.2010.59.
-
(2011)
Mol. Psychiatry
, vol.16
, pp. 238-239
-
-
Addington, A.M.1
Gauthier, J.2
Piton, A.3
Hamdan, F.F.4
Raymond, A.5
Gogtay, N.6
Miller, R.7
Tossell, J.8
Bakalar, J.9
Inoff-Germain, G.10
Germain, G.11
Gochman, P.12
Long, R.13
Rapoport, J.L.14
Rouleau, G.A.15
-
101
-
-
77953914253
-
Mutations of the UPF3B gene, which encodes a protein widely expressed in neurons, are associated with nonspecific mental retardation with or without autism
-
Laumonnier F, Shoubridge C, Antar C, Nguyen LS, Van Esch H, Kleefstra T, Briault S, Fryns JP, Hamel B, Chelly J, Ropers HH, Ronce N, Blesson S, Moraine C, Gécz J, Raynaud M. 2010. Mutations of the UPF3B gene, which encodes a protein widely expressed in neurons, are associated with nonspecific mental retardation with or without autism. Mol. Psychiatry 15:767-776. http://dx.doi.org/10.1038/mp.2009.14.
-
(2010)
Mol. Psychiatry
, vol.15
, pp. 767-776
-
-
Laumonnier, F.1
Shoubridge, C.2
Antar, C.3
Nguyen, L.S.4
Van Esch, H.5
Kleefstra, T.6
Briault, S.7
Fryns, J.P.8
Hamel, B.9
Chelly, J.10
Ropers, H.H.11
Ronce, N.12
Blesson, S.13
Moraine, C.14
Gécz, J.15
Raynaud, M.16
-
102
-
-
34548353924
-
Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation
-
Tarpey PS, Raymond FL, Nguyen LS, Rodriguez J, Hackett A, Vandeleur L, Smith R, Shoubridge C, Edkins S, Stevens C, O'Meara S, Tofts C, Barthorpe S, Buck G, Cole J, Halliday K, Hills K, Jones D, Mironenko T, Perry J, Varian J, West S, Widaa S, Teague J, Dicks E, Butler A, Menzies A, Richardson D, Jenkinson A, Shepherd R, Raine K, Moon J, Luo Y, Parnau J, Bhat SS, Gardner A, Corbett M, Brooks D, Thomas P, Parkinson-Lawrence E, Porteous ME, Warner JP, Sanderson T, Pearson P, Simensen RJ, Skinner C, Hoganson G, Superneau D, Wooster R, Bobrow M, Turner G, Stevenson RE, Schwartz CE, Futreal PA, Srivastava AK, Stratton MR, Gécz J. 2007. Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation. Nat. Genet. 39: 1127-1133. http://dx.doi.org/10.1038/ng2100.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1127-1133
-
-
Tarpey, P.S.1
Raymond, F.L.2
Nguyen, L.S.3
Rodriguez, J.4
Hackett, A.5
Vandeleur, L.6
Smith, R.7
Shoubridge, C.8
Edkins, S.9
Stevens, C.10
O'Meara, S.11
Tofts, C.12
Barthorpe, S.13
Buck, G.14
Cole, J.15
Halliday, K.16
Hills, K.17
Jones, D.18
Mironenko, T.19
Perry, J.20
Varian, J.21
West, S.22
Widaa, S.23
Teague, J.24
Dicks, E.25
Butler, A.26
Menzies, A.27
Richardson, D.28
Jenkinson, A.29
Shepherd, R.30
Raine, K.31
Moon, J.32
Luo, Y.33
Parnau, J.34
Bhat, S.S.35
Gardner, A.36
Corbett, M.37
Brooks, D.38
Thomas, P.39
Parkinson-Lawrence, E.40
Porteous, M.E.41
Warner, J.P.42
Sanderson, T.43
Pearson, P.44
Simensen, R.J.45
Skinner, C.46
Hoganson, G.47
Superneau, D.48
Wooster, R.49
Bobrow, M.50
Turner, G.51
Stevenson, R.E.52
Schwartz, C.E.53
Futreal, P.A.54
Srivastava, A.K.55
Stratton, M.R.56
Gécz, J.57
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