메뉴 건너뛰기




Volumn 7, Issue 11, 2012, Pages 1434-1437

The salicylic acid dependent and independent effects of NMD in plants

Author keywords

Arabidopsis; Conserved upstream open reading frame; Nonsense mediated mRNA decay; Salicylic acid

Indexed keywords

ARABIDOPSIS PROTEIN; MESSENGER RNA; SALICYLIC ACID;

EID: 84868545662     PISSN: 15592316     EISSN: 15592324     Source Type: Journal    
DOI: 10.4161/psb.21960     Document Type: Article
Times cited : (13)

References (28)
  • 1
    • 19444368979 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in mammals
    • PMID:15860725
    • Maquat LE. Nonsense-mediated mRNA decay in mammals. J Cell Sci 2005; 118:1773-6; PMID:15860725
    • (2005) J Cell Sci , vol.118 , pp. 1773-1776
    • Maquat, L.E.1
  • 2
    • 0347416978 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast
    • PMID:14690598
    • He F, Li XR, Spatrick P, Casillo R, Dong SY, Jacobson A. Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast. Molecular Cell 20003; 12:1439-52; PMID:14690598; http://www.ncbi.nlm.nih.gov/pubmed/14690598
    • (2000) Molecular Cell , vol.3 , Issue.12 , pp. 1439-1452
    • He, F.1    Li, X.R.2    Spatrick, P.3    Casillo, R.4    Dong, S.Y.5    Jacobson, A.6
  • 3
    • 6944256813 scopus 로고    scopus 로고
    • Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
    • PMID:15448691; http://dx.doi.org/10.1038/ng1429
    • Mendell JT, Sharifi NA, Meyers JL, Martinez-Murillo F, Dietz HC. Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise. Nat Genet 2004; 36:1073-8; http://www.ncbi.nlm.nih.gov/pubmed/15448691; PMID:15448691; http://dx.doi.org/10.1038/ng1429.
    • (2004) Nat Genet , vol.36 , pp. 1073-1078
    • Mendell, J.T.1    Sharifi, N.A.2    Meyers, J.L.3    Martinez-Murillo, F.4    Dietz, H.C.5
  • 4
    • 25844435702 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
    • PMID:16199763
    • Rehwinkel A, Letunic I, Raes J, Bork P, Izaurralde E. Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets. RNA-a Publication of the RNA Society 2005; 11:1530-44; PMID:16199763; http://www.ncbi.nlm.nih.gov/pubmed/16199763.
    • (2005) RNA-a Publication of the RNA Society , vol.11 , pp. 1530-1544
    • Rehwinkel, A.1    Letunic, I.2    Raes, J.3    Bork, P.4    Izaurralde, E.5
  • 5
    • 33751375141 scopus 로고    scopus 로고
    • Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast
    • PMID:17166056; http://dx.doi. org/10.1371/journal.pgen.0020203
    • Guan QN, Zheng W, Tang SJ, Liu XS, Zinkel RA, Tsui KW, et al. Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast. PLoS Genet 2006; 2:e203; http://www.ncbi.nlm.nih.gov/pubmed/17166056; PMID:17166056; http://dx.doi. org/10.1371/journal.pgen.0020203.
    • (2006) PLoS Genet , vol.2
    • Guan, Q.N.1    Zheng, W.2    Tang, S.J.3    Liu, X.S.4    Zinkel, R.A.5    Tsui, K.W.6
  • 6
    • 60549106018 scopus 로고    scopus 로고
    • Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
    • PMID:19181858; http://dx.doi. org/10.1073/pnas.0808902106
    • Kurihara Y, Matsui A, Hanada K, Kawashima M, Ishida J, Morosawa T, et al. Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Proc Natl Acad Sci U S A 2009; 106:2453-8; http://www.ncbi.nlm.nih.gov/pubmed/19181858; PMID:19181858; http://dx.doi. org/10.1073/pnas.0808902106.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 2453-2458
    • Kurihara, Y.1    Matsui, A.2    Hanada, K.3    Kawashima, M.4    Ishida, J.5    Morosawa, T.6
  • 7
    • 27144540254 scopus 로고    scopus 로고
    • UPF3 supresses aberrant spliced mRNA in Arabidopsis
    • http://dx.doi.org/10.1111/j.1365-313X.2005.02473.x
    • Hori K, Watanabe Y. UPF3 supresses aberrant spliced mRNA in Arabidopsis. Plant J 2006; 43:530-40; http://www.ncbi.nlm.nih.gov/pubmed/16098107; http://dx.doi.org/10.1111/j.1365-313X.2005.02473.x.
    • (2006) Plant J , vol.43 , pp. 530-540
    • Hori, K.1    Watanabe, Y.2
  • 8
    • 33745099773 scopus 로고    scopus 로고
    • Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth
    • PMID:16540482; http://dx.doi.org/10.1093/pcp/pcj035
    • Yoine M, Nishii T, Nakamura K. Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth. Plant Cell Physiol 2006; 47:572-80; http://www.ncbi. nlm.nih.gov/pubmed/16540482; PMID:16540482; http://dx.doi.org/10.1093/pcp/pcj035.
    • (2006) Plant Cell Physiol , vol.47 , pp. 572-580
    • Yoine, M.1    Nishii, T.2    Nakamura, K.3
  • 9
    • 33745817833 scopus 로고    scopus 로고
    • UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis
    • PMID:16813578. http://dx.doi. org/10.1111/j.1365-313X.2006.02802.x
    • Arciga-Reyes L, Wootton L, Kieffer M, Davies B. UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant J 2006; 47:480-9; http://www.ncbi.nlm.nih.gov/pubmed/16813578; PMID:16813578. http://dx.doi. org/10.1111/j.1365-313X.2006.02802.x.
    • (2006) Plant J , vol.47 , pp. 480-489
    • Arciga-Reyes, L.1    Wootton, L.2    Kieffer, M.3    Davies, B.4
  • 10
    • 44649127573 scopus 로고    scopus 로고
    • Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay
    • PMID:18451801; http://dx.doi.org/10.1038/emboj.2008.88
    • Kerényi Z, Mérai Z, Hiripi L, Benkovics A, Gyula P, Lacomme C, et al. Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay. EMBO J 2008; 27:1585-95; http://www.ncbi.nlm. nih.gov/pubmed/18451801; PMID:18451801; http://dx.doi.org/10.1038/emboj.2008.88.
    • (2008) EMBO J , vol.27 , pp. 1585-1595
    • Kerényi, Z.1    Mérai, Z.2    Hiripi, L.3    Benkovics, A.4    Gyula, P.5    Lacomme, C.6
  • 11
    • 33845622065 scopus 로고    scopus 로고
    • Both introns and long 3'-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
    • PMID:17088291; http://dx.doi.org/10.1093/nar/gkl737
    • Kertész S, Kerényi Z, Mérai Z, Bartos I, Pálfy T, Barta E, et al. Both introns and long 3'-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Res 2006; 34:6147-57; http://www.ncbi.nlm.nih.gov/pubmed/17088291; PMID:17088291; http://dx.doi.org/10.1093/nar/gkl737.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6147-6157
    • Kertész, S.1    Kerényi, Z.2    Mérai, Z.3    Bartos, I.4    Pálfy, T.5    Barta, E.6
  • 12
    • 70350216071 scopus 로고    scopus 로고
    • Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner
    • PMID:19653106; http://dx.doi.org/10.1007/s11103-009-9528-4
    • Nyikó T, Sonkoly B, Mérai Z, Benkovics AH, Silhavy D. Plant upstream ORFs can trigger nonsense-mediated mRNA decay in a size-dependent manner. Plant Mol Biol 2009; 71:367-78; http://www.ncbi.nlm.nih. gov/pubmed/19653106; PMID:19653106; http://dx.doi.org/10.1007/s11103-009-9528-4.
    • (2009) Plant Mol Biol , vol.71 , pp. 367-378
    • Nyikó, T.1    Sonkoly, B.2    Mérai, Z.3    Benkovics, A.H.4    Silhavy, D.5
  • 13
    • 84857478172 scopus 로고    scopus 로고
    • A role for nonsense-mediated mRNA decay in plants: Pathogen responses are induced in Arabidopsis thaliana NMD mutants
    • PMID:22384098; http://dx.doi.org/10.1371/journal.pone.0031917
    • Rayson S, Arciga-Reyes L, Wootton L, De Torres Zabala M, Truman W, Graham N, et al. A role for nonsense-mediated mRNA decay in plants: pathogen responses are induced in Arabidopsis thaliana NMD mutants. PLoS One 2012; 7:e31917; http://www.ncbi. nlm.nih.gov/pubmed/22384098; PMID:22384098; http://dx.doi.org/10.1371/journal.pone.0031917.
    • (2012) PLoS One , vol.7
    • Rayson, S.1    Arciga-Reyes, L.2    Wootton, L.3    De Torres Zabala, M.4    Truman, W.5    Graham, N.6
  • 14
    • 84863218026 scopus 로고    scopus 로고
    • Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response
    • http://www.ncbi.nlm.nih.gov/pubmed/22379136; PMID:22379136
    • Riehs-Kearnan N, Gloggnitzer J, Dekrout B, Jonak C, Riha K. Aberrant growth and lethality of Arabidopsis deficient in nonsense-mediated RNA decay factors is caused by autoimmune-like response. Nucleic Acids Research 2012; http://www.ncbi.nlm.nih.gov/pubmed/22379136; PMID:22379136; http://dx.doi. org/10.1093/nar/gks195.
    • (2012) Nucleic Acids Research
    • Riehs-Kearnan, N.1    Gloggnitzer, J.2    Dekrout, B.3    Jonak, C.4    Riha, K.5
  • 15
    • 84863147213 scopus 로고    scopus 로고
    • Arabidopsis plants having defects in nonsense-mediated mRNA decay factors UPF1, UPF2, and UPF3 show photoperiod-dependent phenotypes in development and stress responses
    • PMID:22353561; http://dx.doi.org/10.1111/j.1744-7909.2012.01093.x
    • Shi C, Baldwin IT, Wu J. Arabidopsis plants having defects in nonsense-mediated mRNA decay factors UPF1, UPF2, and UPF3 show photoperiod-dependent phenotypes in development and stress responses. J Integr Plant Biol 2012; 54:99-114; http://www.ncbi. nlm.nih.gov/pubmed/22353561; PMID:22353561; http://dx.doi.org/10.1111/j.1744-7909.2012.01093.x.
    • (2012) J Integr Plant Biol , vol.54 , pp. 99-114
    • Shi, C.1    Baldwin, I.T.2    Wu, J.3
  • 16
    • 83255176939 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense
    • PMID:22025558
    • Jeong H-J, Kim YJ, Kim SH, Kim Y-H, Lee I-J, Kim YK. Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense. Plant & Cell Physiology 2011; 52: 2147-56; PMID:22025558; http://www.ncbi.nlm.nih.gov/pubmed/22025558.
    • (2011) Plant & Cell Physiology , vol.52 , pp. 2147-2156
    • Jeong, H-J.1    Kim, Y.J.2    Kim, S.H.3    Kim, Y-H.4    Lee, I-J.5    Kim, Y.K.6
  • 17
    • 0035969499 scopus 로고    scopus 로고
    • Isochorismate synthase is required to synthesize salicylic acid for plant defence
    • PMID:11734859; http://dx.doi. org/10.1038/35107108
    • Wildermuth MC, Dewdney J, Wu G, Ausubel FM. Isochorismate synthase is required to synthesize salicylic acid for plant defence. Nature 2001; 414:562-5; http://www.ncbi.nlm.nih.gov/pubmed/11734859; PMID:11734859; http://dx.doi. org/10.1038/35107108.
    • (2001) Nature , vol.414 , pp. 562-565
    • Wildermuth, M.C.1    Dewdney, J.2    Wu, G.3    Ausubel, F.M.4
  • 18
    • 36148976155 scopus 로고    scopus 로고
    • Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes
    • PMID:17663791; http://dx.doi.org/10.1186/1741-7007-5-32
    • Hayden CA, Jorgensen RA. Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes. BMC Biol 2007; 5:32; http://www.ncbi.nlm.nih.gov/pubmed/17663791; PMID:17663791; http://dx.doi.org/10.1186/1741-7007-5-32.
    • (2007) BMC Biol , vol.5 , pp. 32
    • Hayden, C.A.1    Jorgensen, R.A.2
  • 19
    • 50549100596 scopus 로고    scopus 로고
    • Conserved upstream open reading frames in higher plants
    • PMID:18667093; http://dx.doi. org/10.1186/1471-2164-9-361
    • Tran MK, Schultz CJ, Baumann U. Conserved upstream open reading frames in higher plants. BMC Genomics 2008; 9:361; http://www.ncbi.nlm.nih.gov/pubmed/18667093; PMID:18667093; http://dx.doi. org/10.1186/1471-2164-9-361.
    • (2008) BMC Genomics , vol.9 , pp. 361
    • Tran, M.K.1    Schultz, C.J.2    Baumann, U.3
  • 20
    • 84865535621 scopus 로고    scopus 로고
    • BAIUCAS: A novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences, and its application to the Arabidopsis thaliana genome
    • PMID:22618534
    • Takahashi H, Takahashi A, Naito S, Onouchi H. BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences, and its application to the Arabidopsis thaliana genome. Bioinformatics 2012; PMID:22618534; http://www.ncbi.nlm.nih. gov/pubmed/22618534
    • (2012) Bioinformatics
    • Takahashi, H.1    Takahashi, A.2    Naito, S.3    Onouchi, H.4
  • 21
    • 13944270653 scopus 로고    scopus 로고
    • mRNA sequence features that contribute to translational regulation in Arabidopsis
    • PMID:15716313; http://dx.doi.org/10.1093/nar/gki240
    • Kawaguchi R, Bailey-Serres J. mRNA sequence features that contribute to translational regulation in Arabidopsis. Nucleic Acids Res 2005; 33:955-65; http://www.ncbi.nlm.nih.gov/pubmed/15716313; PMID:15716313; http://dx.doi.org/10.1093/nar/gki240.
    • (2005) Nucleic Acids Res , vol.33 , pp. 955-965
    • Kawaguchi, R.1    Bailey-Serres, J.2
  • 22
    • 0029909497 scopus 로고    scopus 로고
    • Inhibition of nascent-peptide release at translation termination
    • PMID:8943366
    • Cao J, Geballe AP. Inhibition of nascent-peptide release at translation termination. Mol Cell Biol 1996; 16:7109-14; http://www.ncbi.nlm.nih.gov/pubmed/8943366; PMID:8943366.
    • (1996) Mol Cell Biol , vol.16 , pp. 7109-7114
    • Cao, J.1    Geballe, A.P.2
  • 23
    • 0029943803 scopus 로고    scopus 로고
    • Role of an upstream open reading frame in mediating arginine-specific translational control in Neurospora crassa
    • PMID:8636015
    • Luo Z, Sachs MS. Role of an upstream open reading frame in mediating arginine-specific translational control in Neurospora crassa. J Bacteriol 1996; 178:2172-7; PMID:8636015; http://www.ncbi.nlm.nih.gov/pubmed/8636015.
    • (1996) J Bacteriol , vol.178 , pp. 2172-2177
    • Luo, Z.1    Sachs, M.S.2
  • 24
    • 0029909265 scopus 로고    scopus 로고
    • The upstream open reading frame of the mRNA encoding S-adenosylmethionine decarboxylase is a polyamineresponsive translational control element
    • PMID:8939886; http://dx.doi. org/10.1074/jbc.271.47.29576
    • Ruan H, Shantz LM, Pegg AE, Morris DR. The upstream open reading frame of the mRNA encoding S-adenosylmethionine decarboxylase is a polyamineresponsive translational control element. J Biol Chem 1996; 271:29576-82; http://www.ncbi.nlm.nih.gov/pubmed/8939886; PMID:8939886; http://dx.doi. org/10.1074/jbc.271.47.29576.
    • (1996) J Biol Chem , vol.271 , pp. 29576-29582
    • Ruan, H.1    Shantz, L.M.2    Pegg, A.E.3    Morris, D.R.4
  • 25
    • 27644520989 scopus 로고    scopus 로고
    • Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay
    • PMID:16285926; http://dx.doi.org/10.1016/j.molcel.2005.09.019
    • Gaba A, Jacobson A, Sachs MS. Ribosome occupancy of the yeast CPA1 upstream open reading frame termination codon modulates nonsense-mediated mRNA decay. Mol Cell 2005; 20:449-60; http://www.ncbi. nlm.nih.gov/pubmed/16285926; PMID:16285926; http://dx.doi.org/10.1016/j.molcel.2005.09.019.
    • (2005) Mol Cell , vol.20 , pp. 449-460
    • Gaba, A.1    Jacobson, A.2    Sachs, M.S.3
  • 26
    • 0033539698 scopus 로고    scopus 로고
    • Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling
    • PMID:10557364; http://dx.doi.org/10.1073/pnas.96.23.13583
    • Jirage D, Tootle TL, Reuber TL, Frost LN, Feys BJ, Parker JE, et al. Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling. Proc Natl Acad Sci U S A 1999; 96:13583-8; http://www.ncbi.nlm.nih.gov/pubmed/10557364; PMID:10557364; http://dx.doi.org/10.1073/pnas.96.23.13583.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 13583-13588
    • Jirage, D.1    Tootle, T.L.2    Reuber, T.L.3    Frost, L.N.4    Feys, B.J.5    Parker, J.E.6
  • 27
    • 0035477801 scopus 로고    scopus 로고
    • Direct interaction between the Arabidopsis disease resistance signaling proteins, EDS1 and PAD4
    • PMID:11574472; http://dx.doi. org/10.1093/emboj/20.19.5400
    • Feys BJ, Moisan LJ, Newman M-A, Parker JE. Direct interaction between the Arabidopsis disease resistance signaling proteins, EDS1 and PAD4. EMBO J 2001; 20:5400-11; http://www.ncbi.nlm.nih.gov/pubmed/11574472; PMID:11574472; http://dx.doi. org/10.1093/emboj/20.19.5400.
    • (2001) EMBO J , vol.20 , pp. 5400-5411
    • Feys, B.J.1    Moisan, L.J.2    Newman, M-A.3    Parker, J.E.4
  • 28
    • 0347968038 scopus 로고    scopus 로고
    • NASCArrays: A repository for microarray data generated by NASC's transcriptomics service
    • DATABASE ISSUE. PMID:14681484; http://dx.doi.org/10.1093/nar/gkh133
    • Craigon DJ, James N, Okyere J, Higgins J, Jotham J, May S. NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res 2004; 32(Database issue):D575-7; http://www.ncbi.nlm.nih.gov/pubmed/14681484; PMID:14681484; http://dx.doi.org/10.1093/nar/gkh133.
    • (2004) Nucleic Acids Res , vol.32
    • Craigon, D.J.1    James, N.2    Okyere, J.3    Higgins, J.4    Jotham, J.5    May, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.