메뉴 건너뛰기




Volumn 185, Issue 1, 2010, Pages 83-89

Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay

Author keywords

Alternative splicing; Arabidopsis; Nonsense mediated decay (NMD); Serine arginine rich proteins; Splice variants

Indexed keywords

AMINO ACID; ARABIDOPSIS PROTEIN; ARGININE; RNA PRECURSOR; SERINE; UPF3 PROTEIN, ARABIDOPSIS;

EID: 71249104734     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2009.03065.x     Document Type: Article
Times cited : (82)

References (38)
  • 2
    • 33745817833 scopus 로고    scopus 로고
    • UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis
    • Arciga-Reyes L, Wootton L, Kieffer M, Davies B. 2006. UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis. Plant Journal 47 : 480 489.
    • (2006) Plant Journal , vol.47 , pp. 480-489
    • Arciga-Reyes, L.1    Wootton, L.2    Kieffer, M.3    Davies, B.4
  • 3
    • 69049106478 scopus 로고    scopus 로고
    • Global analysis of alternative splicing uncovers developmental regulation of nonsense-mediated decay in C. elegans
    • Barberan-Soler S, Lambert NJ, Zahler AM. 2009. Global analysis of alternative splicing uncovers developmental regulation of nonsense-mediated decay in C. elegans. RNA 15 : 1652 1660.
    • (2009) RNA , vol.15 , pp. 1652-1660
    • Barberan-Soler, S.1    Lambert, N.J.2    Zahler, A.M.3
  • 5
    • 0038401969 scopus 로고    scopus 로고
    • Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity
    • Caceres JF, Misteli T, Screaton GR, Spector DL, Krainer AR. 1997. Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity. Journal of Cell Biology 138 : 225 238.
    • (1997) Journal of Cell Biology , vol.138 , pp. 225-238
    • Caceres, J.F.1    Misteli, T.2    Screaton, G.R.3    Spector, D.L.4    Krainer, A.R.5
  • 6
    • 33846573830 scopus 로고    scopus 로고
    • Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
    • Campbell MA, Haas BJ, Hamilton JP, Mount SM, Buell CR. 2006. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics 7 : 327.
    • (2006) BMC Genomics , vol.7 , pp. 327
    • Campbell, M.A.1    Haas, B.J.2    Hamilton, J.P.3    Mount, S.M.4    Buell, C.R.5
  • 8
    • 43249093760 scopus 로고    scopus 로고
    • Posttranscriptional gene regulation by spatial rearrangement of the 3′ untranslated region
    • Eberle AB, Stalder L, Mathys H, Orozco RZ, Muhlemann O. 2008. Posttranscriptional gene regulation by spatial rearrangement of the 3′ untranslated region. PLoS Biology 6 : e92.
    • (2008) PLoS Biology , vol.6 , pp. 92
    • Eberle, A.B.1    Stalder, L.2    Mathys, H.3    Orozco, R.Z.4    Muhlemann, O.5
  • 9
    • 0042025014 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in Drosophila: At the intersection of the yeast and mammalian pathways
    • Gatfield D, Unterholzner L, Ciccarelli FD, Bork P, Izaurralde E. 2003. Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways. EMBO Journal 22 : 3960 3970.
    • (2003) EMBO Journal , vol.22 , pp. 3960-3970
    • Gatfield, D.1    Unterholzner, L.2    Ciccarelli, F.D.3    Bork, P.4    Izaurralde, E.5
  • 11
    • 27144540254 scopus 로고    scopus 로고
    • UPF3 suppresses aberrant spliced mRNA in Arabidopsis
    • Hori K, Watanabe Y. 2005. UPF3 suppresses aberrant spliced mRNA in Arabidopsis. Plant Journal 43 : 530 540.
    • (2005) Plant Journal , vol.43 , pp. 530-540
    • Hori, K.1    Watanabe, Y.2
  • 12
    • 34547659870 scopus 로고    scopus 로고
    • Context analysis of termination codons in mRNA that are recognized by plant NMD
    • Hori K, Watanabe Y. 2007. Context analysis of termination codons in mRNA that are recognized by plant NMD. Plant and Cell Physiology 48 : 1072 1078.
    • (2007) Plant and Cell Physiology , vol.48 , pp. 1072-1078
    • Hori, K.1    Watanabe, Y.2
  • 13
    • 0030850812 scopus 로고    scopus 로고
    • The splicing factor SRp20 modifies splicing of its own mRNA and ASF/SF2 antagonizes this regulation
    • Jumaa H, Nielsen PJ. 1997. The splicing factor SRp20 modifies splicing of its own mRNA and ASF/SF2 antagonizes this regulation. EMBO Journal 16 : 5077 5085.
    • (1997) EMBO Journal , vol.16 , pp. 5077-5085
    • Jumaa, H.1    Nielsen, P.J.2
  • 15
    • 33845622065 scopus 로고    scopus 로고
    • Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants
    • Kertesz S, Kerenyi Z, Merai Z, Bartos I, Palfy T, Barta E, Silhavy D. 2006. Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants. Nucleic Acids Research 34 : 6147 6157.
    • (2006) Nucleic Acids Research , vol.34 , pp. 6147-6157
    • Kertesz, S.1    Kerenyi, Z.2    Merai, Z.3    Bartos, I.4    Palfy, T.5    Barta, E.6    Silhavy, D.7
  • 18
    • 34247330971 scopus 로고    scopus 로고
    • Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
    • Lareau LF, Inada M, Green RE, Wengrod JC, Brenner SE. 2007b. Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature 446 : 926 929.
    • (2007) Nature , vol.446 , pp. 926-929
    • Lareau, L.F.1    Inada, M.2    Green, R.E.3    Wengrod, J.C.4    Brenner, S.E.5
  • 19
    • 0035801373 scopus 로고    scopus 로고
    • The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay
    • Le Hir H, Gatfield D, Izaurralde E, Moore MJ. 2001. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. EMBO Journal 20 : 4987 4997.
    • (2001) EMBO Journal , vol.20 , pp. 4987-4997
    • Le Hir, H.1    Gatfield, D.2    Izaurralde, E.3    Moore, M.J.4
  • 20
    • 0035896529 scopus 로고    scopus 로고
    • Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor
    • Lejeune F, Cavaloc Y, Stevenin J. 2001. Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. Journal of Biological Chemistry 276 : 7850 7858.
    • (2001) Journal of Biological Chemistry , vol.276 , pp. 7850-7858
    • Lejeune, F.1    Cavaloc, Y.2    Stevenin, J.3
  • 21
    • 58249093940 scopus 로고    scopus 로고
    • The SR protein family of splicing factors: Master regulators of gene expression
    • Long JC, Caceres JF. 2009. The SR protein family of splicing factors: master regulators of gene expression. Biochemical Journal 417 : 15 27.
    • (2009) Biochemical Journal , vol.417 , pp. 15-27
    • Long, J.C.1    Caceres, J.F.2
  • 22
    • 0033561378 scopus 로고    scopus 로고
    • AtSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes
    • Lopato S, Kalyna M, Dorner S, Kobayashi R, Krainer AR, Barta A. 1999. atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes. Genes and Development 13 : 987 1001.
    • (1999) Genes and Development , vol.13 , pp. 987-1001
    • Lopato, S.1    Kalyna, M.2    Dorner, S.3    Kobayashi, R.4    Krainer, A.R.5    Barta, A.6
  • 23
    • 0742323558 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: Splicing, translation and mRNP dynamics
    • Maquat LE. 2004. Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Nature Reviews. Molecular Cell Biology 5 : 89 99.
    • (2004) Nature Reviews. Molecular Cell Biology , vol.5 , pp. 89-99
    • Maquat, L.E.1
  • 25
    • 33847343883 scopus 로고    scopus 로고
    • Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins and its regulation by hormones and stresses
    • Palusa SG, Ali GS, Reddy ASN. 2007. Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins and its regulation by hormones and stresses. Plant Journal 49 : 1091 1107.
    • (2007) Plant Journal , vol.49 , pp. 1091-1107
    • Palusa, S.G.1    Ali, G.S.2    Reddy, A.S.N.3
  • 26
    • 66049162655 scopus 로고    scopus 로고
    • Execution of nonsense-mediated mRNA decay: What defines a substrate?
    • Rebbapragada I, Lykke-Andersen J. 2009. Execution of nonsense-mediated mRNA decay: what defines a substrate? Current Opinion in Cell Biology 21 : 394 402.
    • (2009) Current Opinion in Cell Biology , vol.21 , pp. 394-402
    • Rebbapragada, I.1    Lykke-Andersen, J.2
  • 27
    • 34250813107 scopus 로고    scopus 로고
    • Alternative splicing of pre-messenger RNAs in plants in the genomic era
    • Reddy ASN. 2007. Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annual Review of Plant Biology 58 : 267 294.
    • (2007) Annual Review of Plant Biology , vol.58 , pp. 267-294
    • Reddy, A.S.N.1
  • 30
    • 43249084802 scopus 로고    scopus 로고
    • A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay
    • Singh G, Rebbapragada I, Lykke-Andersen J. 2008. A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay. PLoS Biology 6 : e111.
    • (2008) PLoS Biology , vol.6 , pp. 111
    • Singh, G.1    Rebbapragada, I.2    Lykke-Andersen, J.3
  • 31
    • 33745901873 scopus 로고    scopus 로고
    • Regulation of gene expression by coupling of alternative splicing and NMD
    • In. Maquat, L.E. ed. Eurekah.com. Georgetown, TX, USA. Landes Bioscience
    • Soergel DAW, Lareau LF, Brenner SE. 2006. Regulation of gene expression by coupling of alternative splicing and NMD. In : Maquat LE, ed. Nonsense-mediated mRNA decay. Eurekah.com. Georgetown, TX, USA, Landes Bioscience, 175 196.
    • (2006) Nonsense-mediated MRNA Decay. , pp. 175-196
    • Soergel, D.A.W.1    Lareau, L.F.2    Brenner, S.E.3
  • 32
    • 0035794679 scopus 로고    scopus 로고
    • SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs
    • Sureau A, Gattoni R, Dooghe Y, Stevenin J, Soret J. 2001. SC35 autoregulates its expression by promoting splicing events that destabilize its mRNAs. EMBO Journal 20 : 1785 1796.
    • (2001) EMBO Journal , vol.20 , pp. 1785-1796
    • Sureau, A.1    Gattoni, R.2    Dooghe, Y.3    Stevenin, J.4    Soret, J.5
  • 33
    • 34547672823 scopus 로고    scopus 로고
    • Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress
    • Tanabe N, Yoshimura K, Kimura A, Yabuta Y, Shigeoka S. 2007. Differential expression of alternatively spliced mRNAs of Arabidopsis SR protein homologs, atSR30 and atSR45a, in response to environmental stress. Plant and Cell Physiology 48 : 1036 1049.
    • (2007) Plant and Cell Physiology , vol.48 , pp. 1036-1049
    • Tanabe, N.1    Yoshimura, K.2    Kimura, A.3    Yabuta, Y.4    Shigeoka, S.5
  • 36
    • 33745099773 scopus 로고    scopus 로고
    • Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth
    • Yoine M, Nishii T, Nakamura K. 2006a. Arabidopsis UPF1 RNA helicase for nonsense-mediated mRNA decay is involved in seed size control and is essential for growth. Plant and Cell Physiology 47 : 572 580.
    • (2006) Plant and Cell Physiology , vol.47 , pp. 572-580
    • Yoine, M.1    Nishii, T.2    Nakamura, K.3
  • 37
    • 33745112583 scopus 로고    scopus 로고
    • The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis
    • Yoine M, Ohto MA, Onai K, Mita S, Nakamura K. 2006b. The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis. Plant Journal 47 : 49 62.
    • (2006) Plant Journal , vol.47 , pp. 49-62
    • Yoine, M.1    Ohto, M.A.2    Onai, K.3    Mita, S.4    Nakamura, K.5
  • 38
    • 0034671932 scopus 로고    scopus 로고
    • Pre-mRNA splicing in the absence of an SR protein RS domain
    • Zhu J, Krainer AR. 2000. Pre-mRNA splicing in the absence of an SR protein RS domain. Genes and Development 14 : 3166 3178.
    • (2000) Genes and Development , vol.14 , pp. 3166-3178
    • Zhu, J.1    Krainer, A.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.