-
1
-
-
84861529303
-
Enhancers as information integration hubs in development: Lessons from genomics
-
1:STN:528:DC%2BC38Xlt1Kms7k%3D
-
Buecker C, Wysocka J (2012) Enhancers as information integration hubs in development: lessons from genomics. Trends Genet 28(6):276-284. doi: 10.1016/j.tig.2012.02.008
-
(2012)
Trends Genet
, vol.28
, Issue.6
, pp. 276-284
-
-
Buecker, C.1
Wysocka, J.2
-
2
-
-
79551655285
-
Functional and mechanistic diversity of distal transcription enhancers
-
3742076 1:STN:528:DC%2BC3MXhsFOhtL0%3D 21295696
-
Bulger M, Groudine M (2011) Functional and mechanistic diversity of distal transcription enhancers. Cell 144(3):327-339. doi: 10.1016/j.cell.2011.01.024
-
(2011)
Cell
, vol.144
, Issue.3
, pp. 327-339
-
-
Bulger, M.1
Groudine, M.2
-
3
-
-
0019811465
-
Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences
-
1:STN:528:DyaL38XotVOhsQ%3D%3D6277502
-
Banerji J, Rusconi S, Schaffner W (1981) Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences. Cell 27:299-308
-
(1981)
Cell
, vol.27
, pp. 299-308
-
-
Banerji, J.1
Rusconi, S.2
Schaffner, W.3
-
4
-
-
0019420927
-
In vivo sequence requirements of the SV40 early promotor region
-
1:STN:528:DyaL3MXktlyqsLo%3D6259538
-
Benoist C, Chambon P (1981) In vivo sequence requirements of the SV40 early promotor region. Nature 290(5804):304-310
-
(1981)
Nature
, vol.290
, Issue.5804
, pp. 304-310
-
-
Benoist, C.1
Chambon, P.2
-
5
-
-
84857781464
-
Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization
-
3292289 1:STN:528:DC%2BC38Xjt1Wjur4%3D 22270183
-
Chepelev I, Wei G, Wangsa D, Tang Q, Zhao K (2012) Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization. Cell Res 22(3):490-503. doi: 10.1038/cr.2012.15
-
(2012)
Cell Res
, vol.22
, Issue.3
, pp. 490-503
-
-
Chepelev, I.1
Wei, G.2
Wangsa, D.3
Tang, Q.4
Zhao, K.5
-
6
-
-
84861456609
-
Coding exons function as tissue-specific enhancers of nearby genes
-
3371700 1:STN:528:DC%2BC38XoslSisb0%3D 22442009
-
Birnbaum RY, Clowney EJ, Agamy O, Kim MJ, Zhao J, Yamanaka T, Pappalardo Z, Clarke SL, Wenger AM, Nguyen L, Gurrieri F, Everman DB, Schwartz CE, Birk OS, Bejerano G, Lomvardas S, Ahituv N (2012) Coding exons function as tissue-specific enhancers of nearby genes. Genome Res 22(6):1059-1068. doi: 10.1101/gr.133546.111
-
(2012)
Genome Res
, vol.22
, Issue.6
, pp. 1059-1068
-
-
Birnbaum, R.Y.1
Clowney, E.J.2
Agamy, O.3
Kim, M.J.4
Zhao, J.5
Yamanaka, T.6
Pappalardo, Z.7
Clarke, S.L.8
Wenger, A.M.9
Nguyen, L.10
Gurrieri, F.11
Everman, D.B.12
Schwartz, C.E.13
Birk, O.S.14
Bejerano, G.15
Lomvardas, S.16
Ahituv, N.17
-
7
-
-
84860469898
-
Transcriptional enhancers in protein-coding exons of vertebrate developmental genes
-
3342275 1:STN:528:DC%2BC38Xntlens7k%3D 22567096
-
Ritter DI, Dong Z, Guo S, Chuang JH (2012) Transcriptional enhancers in protein-coding exons of vertebrate developmental genes. PLoS ONE 7(5):e35202. doi: 10.1371/journal.pone.0035202
-
(2012)
PLoS ONE
, vol.7
, Issue.5
, pp. 35202
-
-
Ritter, D.I.1
Dong, Z.2
Guo, S.3
Chuang, J.H.4
-
8
-
-
84861057518
-
Chromatin loop formation in the beta-globin locus and its role in globin gene transcription
-
3887778
-
Kim A, Dean A (2012) Chromatin loop formation in the beta-globin locus and its role in globin gene transcription. Mol Cells 34(1):1-5. doi: 10.1007/s10059-012-0048-8
-
(2012)
Mol Cells
, vol.34
, Issue.1
, pp. 1-5
-
-
Kim, A.1
Dean, A.2
-
9
-
-
84895887720
-
Enhancer biology and enhanceropathies
-
1:STN:528:DC%2BC2cXjsFGksb8%3D
-
Smith E, Shilatifard A (2014) Enhancer biology and enhanceropathies. Nat Struct Mol Biol 21(3):210-219. doi: 10.1038/nsmb.2784
-
(2014)
Nat Struct Mol Biol
, vol.21
, Issue.3
, pp. 210-219
-
-
Smith, E.1
Shilatifard, A.2
-
10
-
-
84865249952
-
Transcription factors: From enhancer binding to developmental control
-
1:STN:528:DC%2BC38XhtFCrtrbM
-
Spitz F, Furlong EE (2012) Transcription factors: from enhancer binding to developmental control. Nat Rev Genet 13(9):613-626. doi: 10.1038/nrg3207
-
(2012)
Nat Rev Genet
, vol.13
, Issue.9
, pp. 613-626
-
-
Spitz, F.1
Furlong, E.E.2
-
11
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
3721348 1:STN:528:DC%2BC38XhtlGns7bL 22955617
-
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA (2012) The accessible chromatin landscape of the human genome. Nature 489(7414):75-82. doi: 10.1038/nature11232
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
Garg, K.11
John, S.12
Sandstrom, R.13
Bates, D.14
Boatman, L.15
Canfield, T.K.16
Diegel, M.17
Dunn, D.18
Ebersol, A.K.19
Frum, T.20
Giste, E.21
Johnson, A.K.22
Johnson, E.M.23
Kutyavin, T.24
Lajoie, B.25
Lee, B.K.26
Lee, K.27
London, D.28
Lotakis, D.29
Neph, S.30
Neri, F.31
Nguyen, E.D.32
Qu, H.33
Reynolds, A.P.34
Roach, V.35
Safi, A.36
Sanchez, M.E.37
Sanyal, A.38
Shafer, A.39
Simon, J.M.40
Song, L.41
Vong, S.42
Weaver, M.43
Yan, Y.44
Zhang, Z.45
Zhang, Z.46
Lenhard, B.47
Tewari, M.48
Dorschner, M.O.49
Hansen, R.S.50
Navas, P.A.51
Stamatoyannopoulos, G.52
Iyer, V.R.53
Lieb, J.D.54
Sunyaev, S.R.55
Akey, J.M.56
Sabo, P.J.57
Kaul, R.58
Furey, T.S.59
Dekker, J.60
Crawford, G.E.61
Stamatoyannopoulos, J.A.62
more..
-
12
-
-
0018359588
-
The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity
-
1:STN:528:DyaE1MXktVars74%3D455450
-
Wu C, Wong YC, Elgin SC (1979) The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity. Cell 16(4):807-814
-
(1979)
Cell
, vol.16
, Issue.4
, pp. 807-814
-
-
Wu, C.1
Wong, Y.C.2
Elgin, S.C.3
-
13
-
-
34548441932
-
Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome
-
1950163
-
Xi H, Shulha HP, Lin JM, Vales TR, Fu Y, Bodine DM, McKay RD, Chenoweth JG, Tesar PJ, Furey TS, Ren B, Weng Z, Crawford GE (2007) Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome. PLoS Genet 3(8):e136. doi: 10.1371/journal.pgen.0030136
-
(2007)
PLoS Genet
, vol.3
, Issue.8
, pp. 136
-
-
Xi, H.1
Shulha, H.P.2
Lin, J.M.3
Vales, T.R.4
Fu, Y.5
Bodine, D.M.6
McKay, R.D.7
Chenoweth, J.G.8
Tesar, P.J.9
Furey, T.S.10
Ren, B.11
Weng, Z.12
Crawford, G.E.13
-
14
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
1:STN:528:DC%2BD2sXmtFKjsro%3D
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K (2007) High-resolution profiling of histone methylations in the human genome. Cell 129(4):823-837. doi: 10.1016/j.cell.2007.05.009
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
15
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
3125718 1:STN:528:DC%2BD1MXovFymu7o%3D 19633671
-
Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G (2009) H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41(8):941-945. doi: 10.1038/ng.409
-
(2009)
Nat Genet
, vol.41
, Issue.8
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
Peng, W.5
Zhao, K.6
Felsenfeld, G.7
-
16
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
2769248 1:STN:528:DC%2BD1cXnslKktL0%3D 18552846
-
Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 40(7):897-903. doi: 10.1038/ng.154
-
(2008)
Nat Genet
, vol.40
, Issue.7
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.Y.8
Peng, W.9
Zhang, M.Q.10
Zhao, K.11
-
17
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
1891429 1:STN:528:DC%2BD2sXntlCrurw%3D 17575053
-
Jin C, Felsenfeld G (2007) Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 21(12):1519-1529. doi: 10.1101/gad.1547707
-
(2007)
Genes Dev
, vol.21
, Issue.12
, pp. 1519-1529
-
-
Jin, C.1
Felsenfeld, G.2
-
18
-
-
0035477093
-
Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs
-
312797 1:STN:528:DC%2BD3MXnsV2gur4%3D 11581157
-
Butler JE, Kadonaga JT (2001) Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. Genes Dev 15(19):2515-2519. doi: 10.1101/gad.924301
-
(2001)
Genes Dev
, vol.15
, Issue.19
, pp. 2515-2519
-
-
Butler, J.E.1
Kadonaga, J.T.2
-
19
-
-
84927641804
-
In search of the determinants of enhancer-promoter interaction specificity
-
25160912
-
van Arensbergen J, van Steensel B, Bussemaker HJ (2014) In search of the determinants of enhancer-promoter interaction specificity. Trends Cell Biol. doi: 10.1016/j.tcb.2014.07.004
-
(2014)
Trends Cell Biol
-
-
Van Arensbergen, J.1
Van Steensel, B.2
Bussemaker, H.J.3
-
20
-
-
84925543087
-
Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation
-
25517091
-
Zabidi MA, Arnold CD, Schernhuber K, Pagani M, Rath M, Frank O, Stark A (2014) Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation. Nature. doi: 10.1038/nature13994
-
(2014)
Nature
-
-
Zabidi, M.A.1
Arnold, C.D.2
Schernhuber, K.3
Pagani, M.4
Rath, M.5
Frank, O.6
Stark, A.7
-
21
-
-
84892445699
-
Making connections: Insulators organize eukaryotic chromosomes into independent cis-regulatory networks
-
4362772 1:STN:528:DC%2BC2cXptVWgtw%3D%3D 24277632
-
Chetverina D, Aoki T, Erokhin M, Georgiev P, Schedl P (2014) Making connections: insulators organize eukaryotic chromosomes into independent cis-regulatory networks. BioEssays 36(2):163-172. doi: 10.1002/bies.201300125
-
(2014)
BioEssays
, vol.36
, Issue.2
, pp. 163-172
-
-
Chetverina, D.1
Aoki, T.2
Erokhin, M.3
Georgiev, P.4
Schedl, P.5
-
22
-
-
67650601695
-
Paused Pol II captures enhancer activity and acts as a potent insulator
-
3959990 1:STN:528:DC%2BD1MXptVahsr4%3D 19605681
-
Core LJ, Lis JT (2009) Paused Pol II captures enhancer activity and acts as a potent insulator. Genes Dev 23(14):1606-1612. doi: 10.1101/gad.1827709
-
(2009)
Genes Dev
, vol.23
, Issue.14
, pp. 1606-1612
-
-
Core, L.J.1
Lis, J.T.2
-
23
-
-
84902212007
-
The 3D genome in transcriptional regulation and pluripotency
-
1:STN:528:DC%2BC2cXpvFSktbw%3D
-
Gorkin DU, Leung D, Ren B (2014) The 3D genome in transcriptional regulation and pluripotency. Cell Stem Cell 14(6):762-775. doi: 10.1016/j.stem.2014.05.017
-
(2014)
Cell Stem Cell
, vol.14
, Issue.6
, pp. 762-775
-
-
Gorkin, D.U.1
Leung, D.2
Ren, B.3
-
24
-
-
84891017304
-
Chromatin insulators and long-distance interactions in Drosophila
-
1:STN:528:DC%2BC3sXhslyqu7bN
-
Kyrchanova O, Georgiev P (2014) Chromatin insulators and long-distance interactions in Drosophila. FEBS Lett 588(1):8-14. doi: 10.1016/j.febslet.2013.10.039
-
(2014)
FEBS Lett
, vol.588
, Issue.1
, pp. 8-14
-
-
Kyrchanova, O.1
Georgiev, P.2
-
25
-
-
84925636391
-
Chromatin-driven behavior of topologically associating domains
-
25280896
-
Ciabrelli F, Cavalli G (2014) Chromatin-driven behavior of topologically associating domains. J Mol Biol. doi: 10.1016/j.jmb.2014.09.013
-
(2014)
J Mol Biol
-
-
Ciabrelli, F.1
Cavalli, G.2
-
26
-
-
84901834984
-
The architecture of gene expression: Integrating dispersed cis-regulatory modules into coherent regulatory domains
-
1:STN:528:DC%2BC2cXht1Oit73F
-
Schwarzer W, Spitz F (2014) The architecture of gene expression: integrating dispersed cis-regulatory modules into coherent regulatory domains. Curr Opin Genet Dev 27:74-82. doi: 10.1016/j.gde.2014.03.014
-
(2014)
Curr Opin Genet Dev
, vol.27
, pp. 74-82
-
-
Schwarzer, W.1
Spitz, F.2
-
27
-
-
84899450857
-
Transcriptional enhancers: From properties to genome-wide predictions
-
1:STN:528:DC%2BC2cXjvFyqt74%3D
-
Shlyueva D, Stampfel G, Stark A (2014) Transcriptional enhancers: from properties to genome-wide predictions. Nat Rev Genet 15(4):272-286. doi: 10.1038/nrg3682
-
(2014)
Nat Rev Genet
, vol.15
, Issue.4
, pp. 272-286
-
-
Shlyueva, D.1
Stampfel, G.2
Stark, A.3
-
28
-
-
84879783381
-
Computational identification of active enhancers in model organisms
-
1:STN:528:DC%2BC3sXhs1ShtLnL
-
Wang C, Zhang MQ, Zhang Z (2013) Computational identification of active enhancers in model organisms. Genomics Proteomics Bioinf 11(3):142-150. doi: 10.1016/j.gpb.2013.04.002
-
(2013)
Genomics Proteomics Bioinf
, vol.11
, Issue.3
, pp. 142-150
-
-
Wang, C.1
Zhang, M.Q.2
Zhang, Z.3
-
29
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Consortium EP (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489(7414):57-74. doi: 10.1038/nature11247
-
(2012)
Nature
, vol.489
, Issue.7414
-
-
-
30
-
-
71749120382
-
Finding distal regulatory elements in the human genome
-
3321269 1:STN:528:DC%2BD1MXhsV2gsrnL 19854636
-
Heintzman ND, Ren B (2009) Finding distal regulatory elements in the human genome. Curr Opin Genet Dev 19(6):541-549. doi: 10.1016/j.gde.2009.09.006
-
(2009)
Curr Opin Genet Dev
, vol.19
, Issue.6
, pp. 541-549
-
-
Heintzman, N.D.1
Ren, B.2
-
31
-
-
84896919030
-
Chromatin contributions to the regulation of innate immunity
-
1:STN:528:DC%2BC2cXovVemt7Y%3D
-
Smale ST, Tarakhovsky A, Natoli G (2014) Chromatin contributions to the regulation of innate immunity. Annu Rev Immunol 32:489-511. doi: 10.1146/annurev-immunol-031210-101303
-
(2014)
Annu Rev Immunol
, vol.32
, pp. 489-511
-
-
Smale, S.T.1
Tarakhovsky, A.2
Natoli, G.3
-
32
-
-
80455144479
-
Pioneer transcription factors: Establishing competence for gene expression
-
3219227 1:STN:528:DC%2BC3MXhsFaktLzN 22056668
-
Zaret KS, Carroll JS (2011) Pioneer transcription factors: establishing competence for gene expression. Genes Dev 25(21):2227-2241. doi: 10.1101/gad.176826.111
-
(2011)
Genes Dev
, vol.25
, Issue.21
, pp. 2227-2241
-
-
Zaret, K.S.1
Carroll, J.S.2
-
33
-
-
84876836223
-
Modification of enhancer chromatin: What, how, and why?
-
1:STN:528:DC%2BC3sXktVOqu7g%3D
-
Calo E, Wysocka J (2013) Modification of enhancer chromatin: what, how, and why? Mol Cell 49(5):825-837. doi: 10.1016/j.molcel.2013.01.038
-
(2013)
Mol Cell
, vol.49
, Issue.5
, pp. 825-837
-
-
Calo, E.1
Wysocka, J.2
-
34
-
-
79953319002
-
Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
-
3065703 1:STN:528:DC%2BC3MXkslansLk%3D 21233399
-
Serandour AA, Avner S, Percevault F, Demay F, Bizot M, Lucchetti-Miganeh C, Barloy-Hubler F, Brown M, Lupien M, Metivier R, Salbert G, Eeckhoute J (2011) Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers. Genome Res 21(4):555-565. doi: 10.1101/gr.111534.110
-
(2011)
Genome Res
, vol.21
, Issue.4
, pp. 555-565
-
-
Serandour, A.A.1
Avner, S.2
Percevault, F.3
Demay, F.4
Bizot, M.5
Lucchetti-Miganeh, C.6
Barloy-Hubler, F.7
Brown, M.8
Lupien, M.9
Metivier, R.10
Salbert, G.11
Eeckhoute, J.12
-
35
-
-
34547635650
-
Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells
-
1941477 1:STN:528:DC%2BD2sXos1ehtrk%3D 17640912
-
Xu J, Pope SD, Jazirehi AR, Attema JL, Papathanasiou P, Watts JA, Zaret KS, Weissman IL, Smale ST (2007) Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells. Proc Natl Acad Sci USA 104(30):12377-12382. doi: 10.1073/pnas.0704579104
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.30
, pp. 12377-12382
-
-
Xu, J.1
Pope, S.D.2
Jazirehi, A.R.3
Attema, J.L.4
Papathanasiou, P.5
Watts, J.A.6
Zaret, K.S.7
Weissman, I.L.8
Smale, S.T.9
-
36
-
-
72849110608
-
Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells
-
2800090 1:STN:528:DC%2BC3cXntFKg 20008934
-
Xu J, Watts JA, Pope SD, Gadue P, Kamps M, Plath K, Zaret KS, Smale ST (2009) Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells. Genes Dev 23(24):2824-2838. doi: 10.1101/gad.1861209
-
(2009)
Genes Dev
, vol.23
, Issue.24
, pp. 2824-2838
-
-
Xu, J.1
Watts, J.A.2
Pope, S.D.3
Gadue, P.4
Kamps, M.5
Plath, K.6
Zaret, K.S.7
Smale, S.T.8
-
37
-
-
77949977555
-
Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages
-
1:STN:528:DC%2BC3cXlsVSntr8%3D
-
Ghisletti S, Barozzi I, Mietton F, Polletti S, De Santa F, Venturini E, Gregory L, Lonie L, Chew A, Wei CL, Ragoussis J, Natoli G (2010) Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages. Immunity 32(3):317-328. doi: 10.1016/j.immuni.2010.02.008
-
(2010)
Immunity
, vol.32
, Issue.3
, pp. 317-328
-
-
Ghisletti, S.1
Barozzi, I.2
Mietton, F.3
Polletti, S.4
De Santa, F.5
Venturini, E.6
Gregory, L.7
Lonie, L.8
Chew, A.9
Wei, C.L.10
Ragoussis, J.11
Natoli, G.12
-
38
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
2898526 1:STN:528:DC%2BC3cXns1SlsLc%3D 20513432
-
Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38(4):576-589. doi: 10.1016/j.molcel.2010.05.004
-
(2010)
Mol Cell
, vol.38
, Issue.4
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
39
-
-
67651111994
-
Early chromatin unfolding by RUNX1: A molecular explanation for differential requirements during specification versus maintenance of the hematopoietic gene expression program
-
2714206 1:STN:528:DC%2BD1MXovVKmu7k%3D 19339695
-
Hoogenkamp M, Lichtinger M, Krysinska H, Lancrin C, Clarke D, Williamson A, Mazzarella L, Ingram R, Jorgensen H, Fisher A, Tenen DG, Kouskoff V, Lacaud G, Bonifer C (2009) Early chromatin unfolding by RUNX1: a molecular explanation for differential requirements during specification versus maintenance of the hematopoietic gene expression program. Blood 114(2):299-309. doi: 10.1182/blood-2008-11-191890
-
(2009)
Blood
, vol.114
, Issue.2
, pp. 299-309
-
-
Hoogenkamp, M.1
Lichtinger, M.2
Krysinska, H.3
Lancrin, C.4
Clarke, D.5
Williamson, A.6
Mazzarella, L.7
Ingram, R.8
Jorgensen, H.9
Fisher, A.10
Tenen, D.G.11
Kouskoff, V.12
Lacaud, G.13
Bonifer, C.14
-
40
-
-
77957672080
-
Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage
-
1:STN:528:DC%2BC3cXps12kt7w%3D
-
Liber D, Domaschenz R, Holmqvist PH, Mazzarella L, Georgiou A, Leleu M, Fisher AG, Labosky PA, Dillon N (2010) Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage. Cell Stem Cell 7(1):114-126. doi: 10.1016/j.stem.2010.05.020
-
(2010)
Cell Stem Cell
, vol.7
, Issue.1
, pp. 114-126
-
-
Liber, D.1
Domaschenz, R.2
Holmqvist, P.H.3
Mazzarella, L.4
Georgiou, A.5
Leleu, M.6
Fisher, A.G.7
Labosky, P.A.8
Dillon, N.9
-
41
-
-
84894084126
-
The Mediator complex: A master coordinator of transcription and cell lineage development
-
1:STN:528:DC%2BC2cXmtVGktrw%3D
-
Yin JW, Wang G (2014) The Mediator complex: a master coordinator of transcription and cell lineage development. Development 141(5):977-987. doi: 10.1242/dev.098392
-
(2014)
Development
, vol.141
, Issue.5
, pp. 977-987
-
-
Yin, J.W.1
Wang, G.2
-
42
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
2953795 1:STN:528:DC%2BC3cXhtVCmtLzP 20720539
-
Kagey MH, Newman JJ, Bilodeau S, Zhan Y, Orlando DA, van Berkum NL, Ebmeier CC, Goossens J, Rahl PB, Levine SS, Taatjes DJ, Dekker J, Young RA (2010) Mediator and cohesin connect gene expression and chromatin architecture. Nature 467(7314):430-435. doi: 10.1038/nature09380
-
(2010)
Nature
, vol.467
, Issue.7314
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
Zhan, Y.4
Orlando, D.A.5
Van Berkum, N.L.6
Ebmeier, C.C.7
Goossens, J.8
Rahl, P.B.9
Levine, S.S.10
Taatjes, D.J.11
Dekker, J.12
Young, R.A.13
-
43
-
-
84874368349
-
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
-
4109059 1:STN:528:DC%2BC3sXjtFWjur8%3D 23417068
-
Lai F, Orom UA, Cesaroni M, Beringer M, Taatjes DJ, Blobel GA, Shiekhattar R (2013) Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 494(7438):497-501. doi: 10.1038/nature11884
-
(2013)
Nature
, vol.494
, Issue.7438
, pp. 497-501
-
-
Lai, F.1
Orom, U.A.2
Cesaroni, M.3
Beringer, M.4
Taatjes, D.J.5
Blobel, G.A.6
Shiekhattar, R.7
-
44
-
-
24044531563
-
Thyroid hormone-induced juxtaposition of regulatory elements/factors and chromatin remodeling of Crabp1 dependent on MED1/TRAP220
-
1:STN:528:DC%2BD2MXhtVSkurrE
-
Park SW, Li G, Lin YP, Barrero MJ, Ge K, Roeder RG, Wei LN (2005) Thyroid hormone-induced juxtaposition of regulatory elements/factors and chromatin remodeling of Crabp1 dependent on MED1/TRAP220. Mol Cell 19(5):643-653. doi: 10.1016/j.molcel.2005.08.008
-
(2005)
Mol Cell
, vol.19
, Issue.5
, pp. 643-653
-
-
Park, S.W.1
Li, G.2
Lin, Y.P.3
Barrero, M.J.4
Ge, K.5
Roeder, R.G.6
Wei, L.N.7
-
45
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
3653129 1:STN:528:DC%2BC3sXlvVCrtbg%3D 23582322
-
Whyte WA, Orlando DA, Hnisz D, Abraham BJ, Lin CY, Kagey MH, Rahl PB, Lee TI, Young RA (2013) Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153(2):307-319. doi: 10.1016/j.cell.2013.03.035
-
(2013)
Cell
, vol.153
, Issue.2
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
-
46
-
-
84880273878
-
Mechanisms of Mediator complex action in transcriptional activation
-
1:STN:528:DC%2BC3sXhtVyis7zL
-
Ansari SA, Morse RH (2013) Mechanisms of Mediator complex action in transcriptional activation. Cell Mol Life Sci 70(15):2743-2756. doi: 10.1007/s00018-013-1265-9
-
(2013)
Cell Mol Life Sci
, vol.70
, Issue.15
, pp. 2743-2756
-
-
Ansari, S.A.1
Morse, R.H.2
-
47
-
-
77958111633
-
The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
-
3217725 1:STN:528:DC%2BC3cXhtlShsLrP 20940737
-
Malik S, Roeder RG (2010) The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation. Nat Rev Genet 11(11):761-772. doi: 10.1038/nrg2901
-
(2010)
Nat Rev Genet
, vol.11
, Issue.11
, pp. 761-772
-
-
Malik, S.1
Roeder, R.G.2
-
48
-
-
84888588009
-
The Mediator complex and transcription regulation
-
3852498 1:STN:528:DC%2BC3sXhvVShsbrE 24088064
-
Poss ZC, Ebmeier CC, Taatjes DJ (2013) The Mediator complex and transcription regulation. Crit Rev Biochem Mol Biol 48(6):575-608. doi: 10.3109/10409238.2013.840259
-
(2013)
Crit Rev Biochem Mol Biol
, vol.48
, Issue.6
, pp. 575-608
-
-
Poss, Z.C.1
Ebmeier, C.C.2
Taatjes, D.J.3
-
49
-
-
27544466462
-
The role of enhancers as centres for general transcription factor recruitment
-
1:STN:528:DC%2BD2MXhtFKhsLvP
-
Szutorisz H, Dillon N, Tora L (2005) The role of enhancers as centres for general transcription factor recruitment. Trends Biochem Sci 30(11):593-599. doi: 10.1016/j.tibs.2005.08.006
-
(2005)
Trends Biochem Sci
, vol.30
, Issue.11
, pp. 593-599
-
-
Szutorisz, H.1
Dillon, N.2
Tora, L.3
-
50
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
1:STN:528:DC%2BC3sXhs1SrtLbL
-
Hnisz D, Abraham BJ, Lee TI, Lau A, Saint-Andre V, Sigova AA, Hoke HA, Young RA (2013) Super-enhancers in the control of cell identity and disease. Cell 155(4):934-947. doi: 10.1016/j.cell.2013.09.053
-
(2013)
Cell
, vol.155
, Issue.4
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-Andre, V.5
Sigova, A.A.6
Hoke, H.A.7
Young, R.A.8
-
51
-
-
77449109789
-
Target gene context influences the transcriptional requirement for the KAT3 family of CBP and p300 histone acetyltransferases
-
2829352 1:STN:528:DC%2BC3cXot1Cjtbo%3D 20110770
-
Bedford DC, Kasper LH, Fukuyama T, Brindle PK (2010) Target gene context influences the transcriptional requirement for the KAT3 family of CBP and p300 histone acetyltransferases. Epigenetics 5(1):9-15
-
(2010)
Epigenetics
, vol.5
, Issue.1
, pp. 9-15
-
-
Bedford, D.C.1
Kasper, L.H.2
Fukuyama, T.3
Brindle, P.K.4
-
52
-
-
84872198371
-
Genomic occupancy of the transcriptional co-activators p300 and CBP
-
3644037
-
Holmqvist PH, Mannervik M (2013) Genomic occupancy of the transcriptional co-activators p300 and CBP. Transcription 4(1):18-23. doi: 10.4161/trns.22601
-
(2013)
Transcription
, vol.4
, Issue.1
, pp. 18-23
-
-
Holmqvist, P.H.1
Mannervik, M.2
-
53
-
-
57049120143
-
Structure and chemistry of the p300/CBP and Rtt109 histone acetyltransferases: Implications for histone acetyltransferase evolution and function
-
2643075 1:STN:528:DC%2BD1cXhsVOisr%2FI 18845255
-
Wang L, Tang Y, Cole PA, Marmorstein R (2008) Structure and chemistry of the p300/CBP and Rtt109 histone acetyltransferases: implications for histone acetyltransferase evolution and function. Curr Opin Struct Biol 18(6):741-747. doi: 10.1016/j.sbi.2008.09.004
-
(2008)
Curr Opin Struct Biol
, vol.18
, Issue.6
, pp. 741-747
-
-
Wang, L.1
Tang, Y.2
Cole, P.A.3
Marmorstein, R.4
-
54
-
-
77956497337
-
Genome-wide assessment of differential roles for p300 and CBP in transcription regulation
-
2938195 1:STN:528:DC%2BC3cXhtFGgsLbO 20435671
-
Ramos YF, Hestand MS, Verlaan M, Krabbendam E, Ariyurek Y, van Galen M, van Dam H, van Ommen GJ, den Dunnen JT, Zantema A, t Hoen PA (2010) Genome-wide assessment of differential roles for p300 and CBP in transcription regulation. Nucleic Acids Res 38(16):5396-5408. doi: 10.1093/nar/gkq184
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.16
, pp. 5396-5408
-
-
Ramos, Y.F.1
Hestand, M.S.2
Verlaan, M.3
Krabbendam, E.4
Ariyurek, Y.5
Van Galen, M.6
Van Dam, H.7
Van Ommen, G.J.8
Den Dunnen, J.T.9
Zantema, A.10
Hoen P A, T.11
-
55
-
-
69449102464
-
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
-
2750862 1:STN:528:DC%2BD1MXhsVCjs7zK 19698979
-
Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K (2009) Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 138(5):1019-1031. doi: 10.1016/j.cell.2009.06.049
-
(2009)
Cell
, vol.138
, Issue.5
, pp. 1019-1031
-
-
Wang, Z.1
Zang, C.2
Cui, K.3
Schones, D.E.4
Barski, A.5
Peng, W.6
Zhao, K.7
-
56
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
1:STN:528:DC%2BD2sXitVOksbc%3D
-
Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39(3):311-318. doi: 10.1038/ng1966
-
(2007)
Nat Genet
, vol.39
, Issue.3
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
57
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
3020079 1:STN:528:DC%2BC3cXkslartL8%3D 20393465
-
Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, Harmin DA, Laptewicz M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, Greenberg ME (2010) Widespread transcription at neuronal activity-regulated enhancers. Nature 465(7295):182-187. doi: 10.1038/nature09033
-
(2010)
Nature
, vol.465
, Issue.7295
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
Markenscoff-Papadimitriou, E.11
Kuhl, D.12
Bito, H.13
Worley, P.F.14
Kreiman, G.15
Greenberg, M.E.16
-
58
-
-
84655164920
-
Large-scale discovery of enhancers from human heart tissue
-
1:STN:528:DC%2BC3MXhsFGrsrzE
-
May D, Blow MJ, Kaplan T, McCulley DJ, Jensen BC, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Afzal V, Simpson PC, Rubin EM, Black BL, Bristow J, Pennacchio LA, Visel A (2012) Large-scale discovery of enhancers from human heart tissue. Nat Genet 44(1):89-93. doi: 10.1038/ng.1006
-
(2012)
Nat Genet
, vol.44
, Issue.1
, pp. 89-93
-
-
May, D.1
Blow, M.J.2
Kaplan, T.3
McCulley, D.J.4
Jensen, B.C.5
Akiyama, J.A.6
Holt, A.7
Plajzer-Frick, I.8
Shoukry, M.9
Wright, C.10
Afzal, V.11
Simpson, P.C.12
Rubin, E.M.13
Black, B.L.14
Bristow, J.15
Pennacchio, L.A.16
Visel, A.17
-
59
-
-
60149091656
-
ChIP-seq accurately predicts tissue-specific activity of enhancers
-
2745234 1:STN:528:DC%2BD1MXhslCntLg%3D 19212405
-
Visel A, Blow MJ, Li Z, Zhang T, Akiyama JA, Holt A, Plajzer-Frick I, Shoukry M, Wright C, Chen F, Afzal V, Ren B, Rubin EM, Pennacchio LA (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457(7231):854-858. doi: 10.1038/nature07730
-
(2009)
Nature
, vol.457
, Issue.7231
, pp. 854-858
-
-
Visel, A.1
Blow, M.J.2
Li, Z.3
Zhang, T.4
Akiyama, J.A.5
Holt, A.6
Plajzer-Frick, I.7
Shoukry, M.8
Wright, C.9
Chen, F.10
Afzal, V.11
Ren, B.12
Rubin, E.M.13
Pennacchio, L.A.14
-
60
-
-
84864069906
-
Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos
-
3380834 1:STN:528:DC%2BC38XpsVWkt7c%3D 22737084
-
Holmqvist PH, Boija A, Philip P, Crona F, Stenberg P, Mannervik M (2012) Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos. PLoS Genet 8(6):e1002769. doi: 10.1371/journal.pgen.1002769
-
(2012)
PLoS Genet
, vol.8
, Issue.6
, pp. 1002769
-
-
Holmqvist, P.H.1
Boija, A.2
Philip, P.3
Crona, F.4
Stenberg, P.5
Mannervik, M.6
-
61
-
-
79953046943
-
A cis-regulatory map of the Drosophila genome
-
3179250 1:STN:528:DC%2BC3MXjvVOhu7o%3D 21430782
-
Negre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, Cheng C, Auburn RP, Davis MB, Domanus M, Shah PK, Morrison CA, Zieba J, Suchy S, Senderowicz L, Victorsen A, Bild NA, Grundstad AJ, Hanley D, MacAlpine DM, Mannervik M, Venken K, Bellen H, White R, Gerstein M, Russell S, Grossman RL, Ren B, Posakony JW, Kellis M, White KP (2011) A cis-regulatory map of the Drosophila genome. Nature 471(7339):527-531. doi: 10.1038/nature09990
-
(2011)
Nature
, vol.471
, Issue.7339
, pp. 527-531
-
-
Negre, N.1
Brown, C.D.2
Ma, L.3
Bristow, C.A.4
Miller, S.W.5
Wagner, U.6
Kheradpour, P.7
Eaton, M.L.8
Loriaux, P.9
Sealfon, R.10
Li, Z.11
Ishii, H.12
Spokony, R.F.13
Chen, J.14
Hwang, L.15
Cheng, C.16
Auburn, R.P.17
Davis, M.B.18
Domanus, M.19
Shah, P.K.20
Morrison, C.A.21
Zieba, J.22
Suchy, S.23
Senderowicz, L.24
Victorsen, A.25
Bild, N.A.26
Grundstad, A.J.27
Hanley, D.28
Macalpine, D.M.29
Mannervik, M.30
Venken, K.31
Bellen, H.32
White, R.33
Gerstein, M.34
Russell, S.35
Grossman, R.L.36
Ren, B.37
Posakony, J.W.38
Kellis, M.39
White, K.P.40
more..
-
62
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
2910248 1:STN:528:DC%2BD1MXjsVCqtbc%3D 19295514
-
Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Crawford GE, Kellis M, Ren B (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459(7243):108-112. doi: 10.1038/nature07829
-
(2009)
Nature
, vol.459
, Issue.7243
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
Ye, Z.7
Lee, L.K.8
Stuart, R.K.9
Ching, C.W.10
Ching, K.A.11
Antosiewicz-Bourget, J.E.12
Liu, H.13
Zhang, X.14
Green, R.D.15
Lobanenkov, V.V.16
Stewart, R.17
Thomson, J.A.18
Crawford, G.E.19
Kellis, M.20
Ren, B.21
more..
-
63
-
-
81955160676
-
Distant cis-regulatory elements in human skeletal muscle differentiation
-
3229301 1:STN:528:DC%2BC3MXhsFWqsL3O 21907276
-
McCord RP, Zhou VW, Yuh T, Bulyk ML (2011) Distant cis-regulatory elements in human skeletal muscle differentiation. Genomics 98(6):401-411. doi: 10.1016/j.ygeno.2011.08.003
-
(2011)
Genomics
, vol.98
, Issue.6
, pp. 401-411
-
-
McCord, R.P.1
Zhou, V.W.2
Yuh, T.3
Bulyk, M.L.4
-
64
-
-
78751611793
-
Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation
-
3025463 1:STN:528:DC%2BC3cXhsFSrsr3E 21131905
-
Jin Q, Yu LR, Wang L, Zhang Z, Kasper LH, Lee JE, Wang C, Brindle PK, Dent SY, Ge K (2011) Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation. EMBO J 30(2):249-262. doi: 10.1038/emboj.2010.318
-
(2011)
EMBO J
, vol.30
, Issue.2
, pp. 249-262
-
-
Jin, Q.1
Yu, L.R.2
Wang, L.3
Zhang, Z.4
Kasper, L.H.5
Lee, J.E.6
Wang, C.7
Brindle, P.K.8
Dent, S.Y.9
Ge, K.10
-
65
-
-
70350031643
-
CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing
-
2730368 1:STN:528:DC%2BD1MXhtlSisbfF 19700617
-
Tie F, Banerjee R, Stratton CA, Prasad-Sinha J, Stepanik V, Zlobin A, Diaz MO, Scacheri PC, Harte PJ (2009) CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development 136(18):3131-3141. doi: 10.1242/dev.037127
-
(2009)
Development
, vol.136
, Issue.18
, pp. 3131-3141
-
-
Tie, F.1
Banerjee, R.2
Stratton, C.A.3
Prasad-Sinha, J.4
Stepanik, V.5
Zlobin, A.6
Diaz, M.O.7
Scacheri, P.C.8
Harte, P.J.9
-
66
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
3003124 1:STN:528:DC%2BC3cXhs1Wjs7bP 21106759
-
Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, Hanna J, Lodato MA, Frampton GM, Sharp PA, Boyer LA, Young RA, Jaenisch R (2010) Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci USA 107(50):21931-21936. doi: 10.1073/pnas.1016071107
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.50
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
Boyer, L.A.11
Young, R.A.12
Jaenisch, R.13
-
67
-
-
84894598129
-
Rapid and pervasive changes in genome-wide enhancer usage during mammalian development
-
3989111 1:STN:528:DC%2BC3sXhvFymu7rM 24360275
-
Nord AS, Blow MJ, Attanasio C, Akiyama JA, Holt A, Hosseini R, Phouanenavong S, Plajzer-Frick I, Shoukry M, Afzal V, Rubenstein JL, Rubin EM, Pennacchio LA, Visel A (2013) Rapid and pervasive changes in genome-wide enhancer usage during mammalian development. Cell 155(7):1521-1531. doi: 10.1016/j.cell.2013.11.033
-
(2013)
Cell
, vol.155
, Issue.7
, pp. 1521-1531
-
-
Nord, A.S.1
Blow, M.J.2
Attanasio, C.3
Akiyama, J.A.4
Holt, A.5
Hosseini, R.6
Phouanenavong, S.7
Plajzer-Frick, I.8
Shoukry, M.9
Afzal, V.10
Rubenstein, J.L.11
Rubin, E.M.12
Pennacchio, L.A.13
Visel, A.14
-
68
-
-
21244431578
-
Acetylation of GATA-4 is involved in the differentiation of embryonic stem cells into cardiac myocytes
-
1:STN:528:DC%2BD2MXktFymtbY%3D
-
Kawamura T, Ono K, Morimoto T, Wada H, Hirai M, Hidaka K, Morisaki T, Heike T, Nakahata T, Kita T, Hasegawa K (2005) Acetylation of GATA-4 is involved in the differentiation of embryonic stem cells into cardiac myocytes. J Biol Chem 280(20):19682-19688. doi: 10.1074/jbc.M412428200
-
(2005)
J Biol Chem
, vol.280
, Issue.20
, pp. 19682-19688
-
-
Kawamura, T.1
Ono, K.2
Morimoto, T.3
Wada, H.4
Hirai, M.5
Hidaka, K.6
Morisaki, T.7
Heike, T.8
Nakahata, T.9
Kita, T.10
Hasegawa, K.11
-
69
-
-
0034282480
-
Acetylation of GATA-3 affects T-cell survival and homing to secondary lymphoid organs
-
302063 1:STN:528:DC%2BD3cXmslGku7c%3D 10970860
-
Yamagata T, Mitani K, Oda H, Suzuki T, Honda H, Asai T, Maki K, Nakamoto T, Hirai H (2000) Acetylation of GATA-3 affects T-cell survival and homing to secondary lymphoid organs. EMBO J 19(17):4676-4687. doi: 10.1093/emboj/19.17.4676
-
(2000)
EMBO J
, vol.19
, Issue.17
, pp. 4676-4687
-
-
Yamagata, T.1
Mitani, K.2
Oda, H.3
Suzuki, T.4
Honda, H.5
Asai, T.6
Maki, K.7
Nakamoto, T.8
Hirai, H.9
-
70
-
-
26844546178
-
Protein acetylation regulates both PU.1 transactivation and Ig kappa 3′ enhancer activity
-
1:STN:528:DC%2BD2MXhtVylsbnL16210620
-
Bai Y, Srinivasan L, Perkins L, Atchison ML (2005) Protein acetylation regulates both PU.1 transactivation and Ig kappa 3′ enhancer activity. J Immunol 175(8):5160-5169
-
(2005)
J Immunol
, vol.175
, Issue.8
, pp. 5160-5169
-
-
Bai, Y.1
Srinivasan, L.2
Perkins, L.3
Atchison, M.L.4
-
71
-
-
80555156095
-
SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers
-
1:STN:528:DC%2BC3MXhsVaqtLvL
-
Krebs AR, Karmodiya K, Lindahl-Allen M, Struhl K, Tora L (2011) SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers. Mol Cell 44(3):410-423. doi: 10.1016/j.molcel.2011.08.037
-
(2011)
Mol Cell
, vol.44
, Issue.3
, pp. 410-423
-
-
Krebs, A.R.1
Karmodiya, K.2
Lindahl-Allen, M.3
Struhl, K.4
Tora, L.5
-
72
-
-
84876838711
-
The hierarchy of the 3D genome
-
3741673 1:STN:528:DC%2BC3sXktVOqsLc%3D 23473598
-
Gibcus JH, Dekker J (2013) The hierarchy of the 3D genome. Mol Cell 49(5):773-782. doi: 10.1016/j.molcel.2013.02.011
-
(2013)
Mol Cell
, vol.49
, Issue.5
, pp. 773-782
-
-
Gibcus, J.H.1
Dekker, J.2
-
73
-
-
84879232679
-
Genome organization and long-range regulation of gene expression by enhancers
-
4180870 1:STN:528:DC%2BC3sXjsFertLg%3D 23465541
-
Smallwood A, Ren B (2013) Genome organization and long-range regulation of gene expression by enhancers. Curr Opin Cell Biol 25(3):387-394. doi: 10.1016/j.ceb.2013.02.005
-
(2013)
Curr Opin Cell Biol
, vol.25
, Issue.3
, pp. 387-394
-
-
Smallwood, A.1
Ren, B.2
-
74
-
-
0036923833
-
Looping and interaction between hypersensitive sites in the active beta-globin locus
-
1:STN:528:DC%2BD3sXjslOitQ%3D%3D12504019
-
Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W (2002) Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol Cell 10(6):1453-1465
-
(2002)
Mol Cell
, vol.10
, Issue.6
, pp. 1453-1465
-
-
Tolhuis, B.1
Palstra, R.J.2
Splinter, E.3
Grosveld, F.4
De Laat, W.5
-
75
-
-
84855297335
-
A decade of 3C technologies: Insights into nuclear organization
-
3258961
-
de Wit E, de Laat W (2012) A decade of 3C technologies: insights into nuclear organization. Genes Dev 26(1):11-24. doi: 10.1101/gad.179804.111
-
(2012)
Genes Dev
, vol.26
, Issue.1
, pp. 11-24
-
-
De Wit, E.1
De Laat, W.2
-
76
-
-
84905593782
-
Enhancer loops appear stable during development and are associated with paused polymerase
-
1:STN:528:DC%2BC2cXht12ms77L
-
Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE (2014) Enhancer loops appear stable during development and are associated with paused polymerase. Nature 512(7512):96-100. doi: 10.1038/nature13417
-
(2014)
Nature
, vol.512
, Issue.7512
, pp. 96-100
-
-
Ghavi-Helm, Y.1
Klein, F.A.2
Pakozdi, T.3
Ciglar, L.4
Noordermeer, D.5
Huber, W.6
Furlong, E.E.7
-
77
-
-
84919949716
-
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
-
1:STN:528:DC%2BC2cXitFCrtrrK
-
Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL (2014) A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159(7):1665-1680. doi: 10.1016/j.cell.2014.11.021
-
(2014)
Cell
, vol.159
, Issue.7
, pp. 1665-1680
-
-
Rao, S.S.1
Huntley, M.H.2
Durand, N.C.3
Stamenova, E.K.4
Bochkov, I.D.5
Robinson, J.T.6
Sanborn, A.L.7
Machol, I.8
Omer, A.D.9
Lander, E.S.10
Aiden, E.L.11
-
78
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
3555147 1:STN:528:DC%2BC38XhtlGnsLnM 22955621
-
Sanyal A, Lajoie BR, Jain G, Dekker J (2012) The long-range interaction landscape of gene promoters. Nature 489(7414):109-113. doi: 10.1038/nature11279
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
79
-
-
84894589713
-
Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation
-
1:STN:528:DC%2BC3sXhvFyksrvI
-
Kieffer-Kwon KR, Tang Z, Mathe E, Qian J, Sung MH, Li G, Resch W, Baek S, Pruett N, Grontved L, Vian L, Nelson S, Zare H, Hakim O, Reyon D, Yamane A, Nakahashi H, Kovalchuk AL, Zou J, Joung JK, Sartorelli V, Wei CL, Ruan X, Hager GL, Ruan Y, Casellas R (2013) Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation. Cell 155(7):1507-1520. doi: 10.1016/j.cell.2013.11.039
-
(2013)
Cell
, vol.155
, Issue.7
, pp. 1507-1520
-
-
Kieffer-Kwon, K.R.1
Tang, Z.2
Mathe, E.3
Qian, J.4
Sung, M.H.5
Li, G.6
Resch, W.7
Baek, S.8
Pruett, N.9
Grontved, L.10
Vian, L.11
Nelson, S.12
Zare, H.13
Hakim, O.14
Reyon, D.15
Yamane, A.16
Nakahashi, H.17
Kovalchuk, A.L.18
Zou, J.19
Joung, J.K.20
Sartorelli, V.21
Wei, C.L.22
Ruan, X.23
Hager, G.L.24
Ruan, Y.25
Casellas, R.26
more..
-
80
-
-
79955569948
-
Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements
-
3083086 1:STN:528:DC%2BC3MXmtV2qsLk%3D 21471403
-
Hakim O, Sung MH, Voss TC, Splinter E, John S, Sabo PJ, Thurman RE, Stamatoyannopoulos JA, de Laat W, Hager GL (2011) Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements. Genome Res 21(5):697-706. doi: 10.1101/gr.111153.110
-
(2011)
Genome Res
, vol.21
, Issue.5
, pp. 697-706
-
-
Hakim, O.1
Sung, M.H.2
Voss, T.C.3
Splinter, E.4
John, S.5
Sabo, P.J.6
Thurman, R.E.7
Stamatoyannopoulos, J.A.8
De Laat, W.9
Hager, G.L.10
-
81
-
-
84873842521
-
Genome-wide analysis of FOXO3 mediated transcription regulation through RNA polymerase II profiling
-
3564262
-
Eijkelenboom A, Mokry M, de Wit E, Smits LM, Polderman PE, van Triest MH, van Boxtel R, Schulze A, de Laat W, Cuppen E, Burgering BM (2013) Genome-wide analysis of FOXO3 mediated transcription regulation through RNA polymerase II profiling. Mol Syst Biol 9:638. doi: 10.1038/msb.2012.74
-
(2013)
Mol Syst Biol
, vol.9
, pp. 638
-
-
Eijkelenboom, A.1
Mokry, M.2
De Wit, E.3
Smits, L.M.4
Polderman, P.E.5
Van Triest, M.H.6
Van Boxtel, R.7
Schulze, A.8
De Laat, W.9
Cuppen, E.10
Burgering, B.M.11
-
82
-
-
84887620842
-
A high-resolution map of the three-dimensional chromatin interactome in human cells
-
1:STN:528:DC%2BC3sXhslSnsLfK
-
Jin F, Li Y, Dixon JR, Selvaraj S, Ye Z, Lee AY, Yen CA, Schmitt AD, Espinoza CA, Ren B (2013) A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature 503(7475):290-294. doi: 10.1038/nature12644
-
(2013)
Nature
, vol.503
, Issue.7475
, pp. 290-294
-
-
Jin, F.1
Li, Y.2
Dixon, J.R.3
Selvaraj, S.4
Ye, Z.5
Lee, A.Y.6
Yen, C.A.7
Schmitt, A.D.8
Espinoza, C.A.9
Ren, B.10
-
83
-
-
84887835943
-
Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency
-
1:STN:528:DC%2BC3sXptFKltL0%3D
-
Wei Z, Gao F, Kim S, Yang H, Lyu J, An W, Wang K, Lu W (2013) Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency. Cell Stem Cell 13(1):36-47. doi: 10.1016/j.stem.2013.05.010
-
(2013)
Cell Stem Cell
, vol.13
, Issue.1
, pp. 36-47
-
-
Wei, Z.1
Gao, F.2
Kim, S.3
Yang, H.4
Lyu, J.5
An, W.6
Wang, K.7
Lu, W.8
-
84
-
-
76749089660
-
A comprehensive map of insulator elements for the Drosophila genome
-
2797089
-
Negre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP (2010) A comprehensive map of insulator elements for the Drosophila genome. PLoS Genet 6(1):e1000814. doi: 10.1371/journal.pgen.1000814
-
(2010)
PLoS Genet
, vol.6
, Issue.1
, pp. 1000814
-
-
Negre, N.1
Brown, C.D.2
Shah, P.K.3
Kheradpour, P.4
Morrison, C.A.5
Henikoff, J.G.6
Feng, X.7
Ahmad, K.8
Russell, S.9
White, R.A.10
Stein, L.11
Henikoff, S.12
Kellis, M.13
White, K.P.14
-
85
-
-
5444255213
-
The active spatial organization of the beta-globin locus requires the transcription factor EKLF
-
529536 1:STN:528:DC%2BD2cXovVynsr8%3D 15489291
-
Drissen R, Palstra RJ, Gillemans N, Splinter E, Grosveld F, Philipsen S, de Laat W (2004) The active spatial organization of the beta-globin locus requires the transcription factor EKLF. Genes Dev 18(20):2485-2490. doi: 10.1101/gad.317004
-
(2004)
Genes Dev
, vol.18
, Issue.20
, pp. 2485-2490
-
-
Drissen, R.1
Palstra, R.J.2
Gillemans, N.3
Splinter, E.4
Grosveld, F.5
Philipsen, S.6
De Laat, W.7
-
86
-
-
13244272059
-
Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1
-
1:STN:528:DC%2BD2MXhs1Oit7g%3D
-
Vakoc CR, Letting DL, Gheldof N, Sawado T, Bender MA, Groudine M, Weiss MJ, Dekker J, Blobel GA (2005) Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1. Mol Cell 17(3):453-462. doi: 10.1016/j.molcel.2004.12.028
-
(2005)
Mol Cell
, vol.17
, Issue.3
, pp. 453-462
-
-
Vakoc, C.R.1
Letting, D.L.2
Gheldof, N.3
Sawado, T.4
Bender, M.A.5
Groudine, M.6
Weiss, M.J.7
Dekker, J.8
Blobel, G.A.9
-
87
-
-
40349084105
-
Oct4 dependence of chromatin structure within the extended Nanog locus in ES cells
-
2259027 1:STN:528:DC%2BD1cXjsVKnt7g%3D 18283123
-
Levasseur DN, Wang J, Dorschner MO, Stamatoyannopoulos JA, Orkin SH (2008) Oct4 dependence of chromatin structure within the extended Nanog locus in ES cells. Genes Dev 22(5):575-580. doi: 10.1101/gad.1606308
-
(2008)
Genes Dev
, vol.22
, Issue.5
, pp. 575-580
-
-
Levasseur, D.N.1
Wang, J.2
Dorschner, M.O.3
Stamatoyannopoulos, J.A.4
Orkin, S.H.5
-
88
-
-
79953162010
-
Cohesin: Genomic insights into controlling gene transcription and development
-
3070859 1:STN:528:DC%2BC3MXkt1GisbY%3D 21324671
-
Dorsett D (2011) Cohesin: genomic insights into controlling gene transcription and development. Curr Opin Genet Dev 21(2):199-206. doi: 10.1016/j.gde.2011.01.018
-
(2011)
Curr Opin Genet Dev
, vol.21
, Issue.2
, pp. 199-206
-
-
Dorsett, D.1
-
89
-
-
84883212203
-
Cohesin in development and disease
-
1:STN:528:DC%2BC3sXhs1CktL7I
-
Remeseiro S, Cuadrado A, Losada A (2013) Cohesin in development and disease. Development 140(18):3715-3718. doi: 10.1242/dev.090605
-
(2013)
Development
, vol.140
, Issue.18
, pp. 3715-3718
-
-
Remeseiro, S.1
Cuadrado, A.2
Losada, A.3
-
90
-
-
77954922964
-
Activator-Mediator binding regulates Mediator-cofactor interactions
-
2895140 1:STN:528:DC%2BC3cXot1eksbs%3D 20534441
-
Ebmeier CC, Taatjes DJ (2010) Activator-Mediator binding regulates Mediator-cofactor interactions. Proc Natl Acad Sci USA 107(25):11283-11288. doi: 10.1073/pnas.0914215107
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.25
, pp. 11283-11288
-
-
Ebmeier, C.C.1
Taatjes, D.J.2
-
91
-
-
84893155560
-
Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming
-
1:STN:528:DC%2BC3sXptFKkt78%3D
-
Zhang H, Jiao W, Sun L, Fan J, Chen M, Wang H, Xu X, Shen A, Li T, Niu B, Ge S, Li W, Cui J, Wang G, Sun J, Fan X, Hu X, Mrsny RJ, Hoffman AR, Hu JF (2013) Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming. Cell Stem Cell 13(1):30-35. doi: 10.1016/j.stem.2013.05.012
-
(2013)
Cell Stem Cell
, vol.13
, Issue.1
, pp. 30-35
-
-
Zhang, H.1
Jiao, W.2
Sun, L.3
Fan, J.4
Chen, M.5
Wang, H.6
Xu, X.7
Shen, A.8
Li, T.9
Niu, B.10
Ge, S.11
Li, W.12
Cui, J.13
Wang, G.14
Sun, J.15
Fan, X.16
Hu, X.17
Mrsny, R.J.18
Hoffman, A.R.19
Hu, J.F.20
more..
-
92
-
-
84882738244
-
Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites
-
1:STN:528:DC%2BC3sXht1yiu7jL
-
Yan J, Enge M, Whitington T, Dave K, Liu J, Sur I, Schmierer B, Jolma A, Kivioja T, Taipale M, Taipale J (2013) Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites. Cell 154(4):801-813. doi: 10.1016/j.cell.2013.07.034
-
(2013)
Cell
, vol.154
, Issue.4
, pp. 801-813
-
-
Yan, J.1
Enge, M.2
Whitington, T.3
Dave, K.4
Liu, J.5
Sur, I.6
Schmierer, B.7
Jolma, A.8
Kivioja, T.9
Taipale, M.10
Taipale, J.11
-
93
-
-
84876010302
-
Genome-wide control of RNA polymerase II activity by cohesin
-
3605059 1:STN:528:DC%2BC3sXlvValur0%3D 23555293
-
Schaaf CA, Kwak H, Koenig A, Misulovin Z, Gohara DW, Watson A, Zhou Y, Lis JT, Dorsett D (2013) Genome-wide control of RNA polymerase II activity by cohesin. PLoS Genet 9(3):e1003382. doi: 10.1371/journal.pgen.1003382
-
(2013)
PLoS Genet
, vol.9
, Issue.3
, pp. 1003382
-
-
Schaaf, C.A.1
Kwak, H.2
Koenig, A.3
Misulovin, Z.4
Gohara, D.W.5
Watson, A.6
Zhou, Y.7
Lis, J.T.8
Dorsett, D.9
-
94
-
-
84887852466
-
Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming
-
3725985 1:STN:528:DC%2BC3sXnsVygtbo%3D 23665121
-
Apostolou E, Ferrari F, Walsh RM, Bar-Nur O, Stadtfeld M, Cheloufi S, Stuart HT, Polo JM, Ohsumi TK, Borowsky ML, Kharchenko PV, Park PJ, Hochedlinger K (2013) Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming. Cell Stem Cell 12(6):699-712. doi: 10.1016/j.stem.2013.04.013
-
(2013)
Cell Stem Cell
, vol.12
, Issue.6
, pp. 699-712
-
-
Apostolou, E.1
Ferrari, F.2
Walsh, R.M.3
Bar-Nur, O.4
Stadtfeld, M.5
Cheloufi, S.6
Stuart, H.T.7
Polo, J.M.8
Ohsumi, T.K.9
Borowsky, M.L.10
Kharchenko, P.V.11
Park, P.J.12
Hochedlinger, K.13
-
95
-
-
79955952481
-
Cohesin mediates chromatin interactions that regulate mammalian beta-globin expression
-
3093862 1:STN:528:DC%2BC3MXmtVGjtbY%3D 21454523
-
Chien R, Zeng W, Kawauchi S, Bender MA, Santos R, Gregson HC, Schmiesing JA, Newkirk DA, Kong X, Ball AR Jr, Calof AL, Lander AD, Groudine MT, Yokomori K (2011) Cohesin mediates chromatin interactions that regulate mammalian beta-globin expression. J Biol Chem 286(20):17870-17878. doi: 10.1074/jbc.M110.207365
-
(2011)
J Biol Chem
, vol.286
, Issue.20
, pp. 17870-17878
-
-
Chien, R.1
Zeng, W.2
Kawauchi, S.3
Bender, M.A.4
Santos, R.5
Gregson, H.C.6
Schmiesing, J.A.7
Newkirk, D.A.8
Kong, X.9
Ball, Jr.A.R.10
Calof, A.L.11
Lander, A.D.12
Groudine, M.T.13
Yokomori, K.14
-
96
-
-
80052042965
-
A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation
-
3179485 1:STN:528:DC%2BC3MXhtVOnu7jI 21832993
-
Seitan VC, Hao B, Tachibana-Konwalski K, Lavagnolli T, Mira-Bontenbal H, Brown KE, Teng G, Carroll T, Terry A, Horan K, Marks H, Adams DJ, Schatz DG, Aragon L, Fisher AG, Krangel MS, Nasmyth K, Merkenschlager M (2011) A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation. Nature 476(7361):467-471. doi: 10.1038/nature10312
-
(2011)
Nature
, vol.476
, Issue.7361
, pp. 467-471
-
-
Seitan, V.C.1
Hao, B.2
Tachibana-Konwalski, K.3
Lavagnolli, T.4
Mira-Bontenbal, H.5
Brown, K.E.6
Teng, G.7
Carroll, T.8
Terry, A.9
Horan, K.10
Marks, H.11
Adams, D.J.12
Schatz, D.G.13
Aragon, L.14
Fisher, A.G.15
Krangel, M.S.16
Nasmyth, K.17
Merkenschlager, M.18
-
97
-
-
0035839136
-
Translating the histone code
-
1:STN:528:DC%2BD3MXmtVWltro%3D
-
Jenuwein T, Allis CD (2001) Translating the histone code. Science 293(5532):1074-1080. doi: 10.1126/science.1063127
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
98
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Consortium EP, Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermuller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaoz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Loytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA, Program NCS, Baylor College of Medicine Human Genome Sequencing C, Washington University Genome Sequencing C, Broad I, Children's Hospital Oakland Research I, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrimsdottir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447(7146):799-816. doi: 10.1038/nature05874
-
(2007)
Nature
, vol.447
, Issue.7146
-
-
-
99
-
-
34250307630
-
The landscape of histone modifications across 1% of the human genome in five human cell lines
-
1891331 1:STN:528:DC%2BD2sXntVSjs7w%3D 17567990
-
Koch CM, Andrews RM, Flicek P, Dillon SC, Karaoz U, Clelland GK, Wilcox S, Beare DM, Fowler JC, Couttet P, James KD, Lefebvre GC, Bruce AW, Dovey OM, Ellis PD, Dhami P, Langford CF, Weng Z, Birney E, Carter NP, Vetrie D, Dunham I (2007) The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res 17(6):691-707. doi: 10.1101/gr.5704207
-
(2007)
Genome Res
, vol.17
, Issue.6
, pp. 691-707
-
-
Koch, C.M.1
Andrews, R.M.2
Flicek, P.3
Dillon, S.C.4
Karaoz, U.5
Clelland, G.K.6
Wilcox, S.7
Beare, D.M.8
Fowler, J.C.9
Couttet, P.10
James, K.D.11
Lefebvre, G.C.12
Bruce, A.W.13
Dovey, O.M.14
Ellis, P.D.15
Dhami, P.16
Langford, C.F.17
Weng, Z.18
Birney, E.19
Carter, N.P.20
Vetrie, D.21
Dunham, I.22
more..
-
100
-
-
77950262538
-
Nucleosome dynamics define transcriptional enhancers
-
2932437 1:STN:528:DC%2BC3cXivVCiu7o%3D 20208536
-
He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, Zhang Y, Xu K, Ni M, Lupien M, Mieczkowski P, Lieb JD, Zhao K, Brown M, Liu XS (2010) Nucleosome dynamics define transcriptional enhancers. Nat Genet 42(4):343-347. doi: 10.1038/ng.545
-
(2010)
Nat Genet
, vol.42
, Issue.4
, pp. 343-347
-
-
He, H.H.1
Meyer, C.A.2
Shin, H.3
Bailey, S.T.4
Wei, G.5
Wang, Q.6
Zhang, Y.7
Xu, K.8
Ni, M.9
Lupien, M.10
Mieczkowski, P.11
Lieb, J.D.12
Zhao, K.13
Brown, M.14
Liu, X.S.15
-
101
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
4041622 1:STN:528:DC%2BC38XhtFWjtrfJ 22763441
-
Shen Y, Yue F, McCleary DF, Ye Z, Edsall L, Kuan S, Wagner U, Dixon J, Lee L, Lobanenkov VV, Ren B (2012) A map of the cis-regulatory sequences in the mouse genome. Nature 488(7409):116-120. doi: 10.1038/nature11243
-
(2012)
Nature
, vol.488
, Issue.7409
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
102
-
-
80054910846
-
H3K4 tri-methylation provides an epigenetic signature of active enhancers
-
3199384 1:STN:528:DC%2BC3MXhtVWrtLzP 21847099
-
Pekowska A, Benoukraf T, Zacarias-Cabeza J, Belhocine M, Koch F, Holota H, Imbert J, Andrau JC, Ferrier P, Spicuglia S (2011) H3K4 tri-methylation provides an epigenetic signature of active enhancers. EMBO J 30(20):4198-4210. doi: 10.1038/emboj.2011.295
-
(2011)
EMBO J
, vol.30
, Issue.20
, pp. 4198-4210
-
-
Pekowska, A.1
Benoukraf, T.2
Zacarias-Cabeza, J.3
Belhocine, M.4
Koch, F.5
Holota, H.6
Imbert, J.7
Andrau, J.C.8
Ferrier, P.9
Spicuglia, S.10
-
103
-
-
84856239091
-
Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
-
1:STN:528:DC%2BC38XlsFyltw%3D%3D
-
Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczynski B, Riddell A, Furlong EE (2012) Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat Genet 44(2):148-156. doi: 10.1038/ng.1064
-
(2012)
Nat Genet
, vol.44
, Issue.2
, pp. 148-156
-
-
Bonn, S.1
Zinzen, R.P.2
Girardot, C.3
Gustafson, E.H.4
Perez-Gonzalez, A.5
Delhomme, N.6
Ghavi-Helm, Y.7
Wilczynski, B.8
Riddell, A.9
Furlong, E.E.10
-
104
-
-
84891711796
-
The MLL3/MLL4 branches of the COMPASS family function as major histone H3K4 monomethylases at enhancers
-
3838007 1:STN:528:DC%2BC3sXhvVCjtb7I 24081332
-
Hu D, Gao X, Morgan MA, Herz HM, Smith ER, Shilatifard A (2013) The MLL3/MLL4 branches of the COMPASS family function as major histone H3K4 monomethylases at enhancers. Mol Cell Biol 33(23):4745-4754. doi: 10.1128/MCB.01181-13
-
(2013)
Mol Cell Biol
, vol.33
, Issue.23
, pp. 4745-4754
-
-
Hu, D.1
Gao, X.2
Morgan, M.A.3
Herz, H.M.4
Smith, E.R.5
Shilatifard, A.6
-
105
-
-
84870490787
-
Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4
-
3521626 1:STN:528:DC%2BC38XhvVKlsrvL 23166019
-
Herz HM, Mohan M, Garruss AS, Liang K, Takahashi YH, Mickey K, Voets O, Verrijzer CP, Shilatifard A (2012) Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4. Genes Dev 26(23):2604-2620. doi: 10.1101/gad.201327.112
-
(2012)
Genes Dev
, vol.26
, Issue.23
, pp. 2604-2620
-
-
Herz, H.M.1
Mohan, M.2
Garruss, A.S.3
Liang, K.4
Takahashi, Y.H.5
Mickey, K.6
Voets, O.7
Verrijzer, C.P.8
Shilatifard, A.9
-
106
-
-
84891541640
-
-
Lee JE, Wang C, Xu S, Cho YW, Wang L, Feng X, Baldridge A, Sartorelli V, Zhuang L, Peng W, Ge K (2013) H3K4 mono- and di-methyltransferase MLL4 is required for enhancer activation during cell differentiation. eLife 2:e01503. doi: 10.7554/eLife.01503
-
(2013)
H3K4 Mono- And Di-methyltransferase MLL4 Is Required for Enhancer Activation during Cell DifferentiationeLife 2:e01503.
-
-
Lee, J.E.1
Wang, C.2
Xu, S.3
Cho, Y.W.4
Wang, L.5
Feng, X.6
Baldridge, A.7
Sartorelli, V.8
Zhuang, L.9
Peng, W.10
Ge, K.11
-
107
-
-
84894066697
-
Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing
-
3929413 1:STN:528:DC%2BC2cXmtVGkt7k%3D 24550119
-
Tie F, Banerjee R, Saiakhova AR, Howard B, Monteith KE, Scacheri PC, Cosgrove MS, Harte PJ (2014) Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing. Development 141(5):1129-1139. doi: 10.1242/dev.102392
-
(2014)
Development
, vol.141
, Issue.5
, pp. 1129-1139
-
-
Tie, F.1
Banerjee, R.2
Saiakhova, A.R.3
Howard, B.4
Monteith, K.E.5
Scacheri, P.C.6
Cosgrove, M.S.7
Harte, P.J.8
-
108
-
-
79960643838
-
Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription
-
3160253 1:STN:528:DC%2BC3MXnvVektLo%3D 21694722
-
Ardehali MB, Mei A, Zobeck KL, Caron M, Lis JT, Kusch T (2011) Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription. EMBO J 30(14):2817-2828. doi: 10.1038/emboj.2011.194
-
(2011)
EMBO J
, vol.30
, Issue.14
, pp. 2817-2828
-
-
Ardehali, M.B.1
Mei, A.2
Zobeck, K.L.3
Caron, M.4
Lis, J.T.5
Kusch, T.6
-
109
-
-
84855435681
-
DSet1 is the main H3K4 di- and tri-methyltransferase throughout Drosophila development
-
3249358 1:STN:528:DC%2BC38XltlGisb4%3D 22048023
-
Hallson G, Hollebakken RE, Li T, Syrzycka M, Kim I, Cotsworth S, Fitzpatrick KA, Sinclair DA, Honda BM (2012) dSet1 is the main H3K4 di- and tri-methyltransferase throughout Drosophila development. Genetics 190(1):91-100. doi: 10.1534/genetics.111.135863
-
(2012)
Genetics
, vol.190
, Issue.1
, pp. 91-100
-
-
Hallson, G.1
Hollebakken, R.E.2
Li, T.3
Syrzycka, M.4
Kim, I.5
Cotsworth, S.6
Fitzpatrick, K.A.7
Sinclair, D.A.8
Honda, B.M.9
-
110
-
-
81855195123
-
The COMPASS family of H3K4 methylases in Drosophila
-
3209330 1:STN:528:DC%2BC3MXhsVSisbrE 21875999
-
Mohan M, Herz HM, Smith ER, Zhang Y, Jackson J, Washburn MP, Florens L, Eissenberg JC, Shilatifard A (2011) The COMPASS family of H3K4 methylases in Drosophila. Mol Cell Biol 31(21):4310-4318. doi: 10.1128/MCB.06092-11
-
(2011)
Mol Cell Biol
, vol.31
, Issue.21
, pp. 4310-4318
-
-
Mohan, M.1
Herz, H.M.2
Smith, E.R.3
Zhang, Y.4
Jackson, J.5
Washburn, M.P.6
Florens, L.7
Eissenberg, J.C.8
Shilatifard, A.9
-
111
-
-
57349124451
-
Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS
-
2593441 1:STN:528:DC%2BD1cXhsV2mtLjL 18838538
-
Wu M, Wang PF, Lee JS, Martin-Brown S, Florens L, Washburn M, Shilatifard A (2008) Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS. Mol Cell Biol 28(24):7337-7344. doi: 10.1128/MCB.00976-08
-
(2008)
Mol Cell Biol
, vol.28
, Issue.24
, pp. 7337-7344
-
-
Wu, M.1
Wang, P.F.2
Lee, J.S.3
Martin-Brown, S.4
Florens, L.5
Washburn, M.6
Shilatifard, A.7
-
112
-
-
79953060951
-
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
-
3109908 1:STN:528:DC%2BC3MXhtVCrtw%3D%3D 21179089
-
Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ (2011) Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471(7339):480-485. doi: 10.1038/nature09725
-
(2011)
Nature
, vol.471
, Issue.7339
, pp. 480-485
-
-
Kharchenko, P.V.1
Alekseyenko, A.A.2
Schwartz, Y.B.3
Minoda, A.4
Riddle, N.C.5
Ernst, J.6
Sabo, P.J.7
Larschan, E.8
Gorchakov, A.A.9
Gu, T.10
Linder-Basso, D.11
Plachetka, A.12
Shanower, G.13
Tolstorukov, M.Y.14
Luquette, L.J.15
Xi, R.16
Jung, Y.L.17
Park, R.W.18
Bishop, E.P.19
Canfield, T.K.20
Sandstrom, R.21
Thurman, R.E.22
Macalpine, D.M.23
Stamatoyannopoulos, J.A.24
Kellis, M.25
Elgin, S.C.26
Kuroda, M.I.27
Pirrotta, V.28
Karpen, G.H.29
Park, P.J.30
more..
-
113
-
-
0025101148
-
Definition of the minimal requirements within the human beta-globin gene and the dominant control region for high level expression
-
551652 1:STN:528:DyaK3cXhtlemsL0%3D 2295312
-
Collis P, Antoniou M, Grosveld F (1990) Definition of the minimal requirements within the human beta-globin gene and the dominant control region for high level expression. EMBO J 9(1):233-240
-
(1990)
EMBO J
, vol.9
, Issue.1
, pp. 233-240
-
-
Collis, P.1
Antoniou, M.2
Grosveld, F.3
-
114
-
-
0030826364
-
Intergenic transcription and transinduction of the human beta-globin locus
-
316561 1:STN:528:DyaK2sXmslajtr0%3D 9334315
-
Ashe HL, Monks J, Wijgerde M, Fraser P, Proudfoot NJ (1997) Intergenic transcription and transinduction of the human beta-globin locus. Genes Dev 11(19):2494-2509
-
(1997)
Genes Dev
, vol.11
, Issue.19
, pp. 2494-2509
-
-
Ashe, H.L.1
Monks, J.2
Wijgerde, M.3
Fraser, P.4
Proudfoot, N.J.5
-
115
-
-
0026482145
-
Transcription of the hypersensitive site HS2 enhancer in erythroid cells
-
50521 1:STN:528:DyaK3sXnsVKktw%3D%3D 1454801
-
Tuan D, Kong S, Hu K (1992) Transcription of the hypersensitive site HS2 enhancer in erythroid cells. Proc Natl Acad Sci USA 89(23):11219-11223
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, Issue.23
, pp. 11219-11223
-
-
Tuan, D.1
Kong, S.2
Hu, K.3
-
116
-
-
0030921097
-
Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position, and distance of the enhancer relative to the gene
-
232248 1:STN:528:DyaK2sXktFOgsrk%3D 9199330
-
Kong S, Bohl D, Li C, Tuan D (1997) Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position, and distance of the enhancer relative to the gene. Mol Cell Biol 17(7):3955-3965
-
(1997)
Mol Cell Biol
, vol.17
, Issue.7
, pp. 3955-3965
-
-
Kong, S.1
Bohl, D.2
Li, C.3
Tuan, D.4
-
117
-
-
21744448354
-
The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter
-
1:STN:528:DC%2BD2MXlvFymsrY%3D
-
Ling J, Baibakov B, Pi W, Emerson BM, Tuan D (2005) The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter. J Mol Biol 350(5):883-896. doi: 10.1016/j.jmb.2005.05.039
-
(2005)
J Mol Biol
, vol.350
, Issue.5
, pp. 883-896
-
-
Ling, J.1
Baibakov, B.2
Pi, W.3
Emerson, B.M.4
Tuan, D.5
-
118
-
-
0034854577
-
Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter
-
1:STN:528:DC%2BD3MXmvFWgt7w%3D11545748
-
Johnson KD, Christensen HM, Zhao B, Bresnick EH (2001) Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter. Mol Cell 8(2):465-471
-
(2001)
Mol Cell
, vol.8
, Issue.2
, pp. 465-471
-
-
Johnson, K.D.1
Christensen, H.M.2
Zhao, B.3
Bresnick, E.H.4
-
119
-
-
0041689973
-
Highly restricted localization of RNA polymerase II within a locus control region of a tissue-specific chromatin domain
-
193707 1:STN:528:DC%2BD3sXntFKrtbk%3D 12944475
-
Johnson KD, Grass JA, Park C, Im H, Choi K, Bresnick EH (2003) Highly restricted localization of RNA polymerase II within a locus control region of a tissue-specific chromatin domain. Mol Cell Biol 23(18):6484-6493
-
(2003)
Mol Cell Biol
, vol.23
, Issue.18
, pp. 6484-6493
-
-
Johnson, K.D.1
Grass, J.A.2
Park, C.3
Im, H.4
Choi, K.5
Bresnick, E.H.6
-
120
-
-
84865757142
-
Landscape of transcription in human cells
-
3684276 1:STN:528:DC%2BC38XhtlGnt73M 22955620
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, Rozowsky J, Roder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R, Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, King B, Kingswood C, Luo OJ, Park E, Persaud K, Preall JB, Ribeca P, Risk B, Robyr D, Sammeth M, Schaffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H, Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X, Hayashizaki Y, Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis SE, Hannon G, Giddings MC, Ruan Y, Wold B, Carninci P, Guigo R, Gingeras TR (2012) Landscape of transcription in human cells. Nature 489(7414):101-108. doi: 10.1038/nature11233
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
Lin, W.9
Schlesinger, F.10
Xue, C.11
Marinov, G.K.12
Khatun, J.13
Williams, B.A.14
Zaleski, C.15
Rozowsky, J.16
Roder, M.17
Kokocinski, F.18
Abdelhamid, R.F.19
Alioto, T.20
Antoshechkin, I.21
Baer, M.T.22
Bar, N.S.23
Batut, P.24
Bell, K.25
Bell, I.26
Chakrabortty, S.27
Chen, X.28
Chrast, J.29
Curado, J.30
Derrien, T.31
Drenkow, J.32
Dumais, E.33
Dumais, J.34
Duttagupta, R.35
Falconnet, E.36
Fastuca, M.37
Fejes-Toth, K.38
Ferreira, P.39
Foissac, S.40
Fullwood, M.J.41
Gao, H.42
Gonzalez, D.43
Gordon, A.44
Gunawardena, H.45
Howald, C.46
Jha, S.47
Johnson, R.48
Kapranov, P.49
King, B.50
Kingswood, C.51
Luo, O.J.52
Park, E.53
Persaud, K.54
Preall, J.B.55
Ribeca, P.56
Risk, B.57
Robyr, D.58
Sammeth, M.59
Schaffer, L.60
See, L.H.61
Shahab, A.62
Skancke, J.63
Suzuki, A.M.64
Takahashi, H.65
Tilgner, H.66
Trout, D.67
Walters, N.68
Wang, H.69
Wrobel, J.70
Yu, Y.71
Ruan, X.72
Hayashizaki, Y.73
Harrow, J.74
Gerstein, M.75
Hubbard, T.76
Reymond, A.77
Antonarakis, S.E.78
Hannon, G.79
Giddings, M.C.80
Ruan, Y.81
Wold, B.82
Carninci, P.83
Guigo, R.84
Gingeras, T.R.85
more..
-
121
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
2754849 1:STN:528:DC%2BD1MXht1ehsbo%3D 19182780
-
Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, Cabili MN, Jaenisch R, Mikkelsen TS, Jacks T, Hacohen N, Bernstein BE, Kellis M, Regev A, Rinn JL, Lander ES (2009) Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458(7235):223-227. doi: 10.1038/nature07672
-
(2009)
Nature
, vol.458
, Issue.7235
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
Cabili, M.N.11
Jaenisch, R.12
Mikkelsen, T.S.13
Jacks, T.14
Hacohen, N.15
Bernstein, B.E.16
Kellis, M.17
Regev, A.18
Rinn, J.L.19
Lander, E.S.20
more..
-
122
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
1:STN:528:DC%2BD2sXmtFSjtrw%3D
-
Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermuller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR (2007) RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316(5830):1484-1488. doi: 10.1126/science.1138341
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
Bell, I.11
Cheung, E.12
Drenkow, J.13
Dumais, E.14
Patel, S.15
Helt, G.16
Ganesh, M.17
Ghosh, S.18
Piccolboni, A.19
Sementchenko, V.20
Tammana, H.21
Gingeras, T.R.22
more..
-
123
-
-
84921391750
-
Life without A tail: New formats of long noncoding RNAs
-
Zhang Y, Yang L, Chen LL (2013) Life without A tail: New formats of long noncoding RNAs. Int J Biochem Cell Biol. doi: 10.1016/j.biocel.2013.10.009
-
(2013)
Int J Biochem Cell Biol
-
-
Zhang, Y.1
Yang, L.2
Chen, L.L.3
-
125
-
-
77952908743
-
A large fraction of extragenic RNA pol II transcription sites overlap enhancers
-
2867938
-
De Santa F, Barozzi I, Mietton F, Ghisletti S, Polletti S, Tusi BK, Muller H, Ragoussis J, Wei CL, Natoli G (2010) A large fraction of extragenic RNA pol II transcription sites overlap enhancers. PLoS Biol 8(5):e1000384. doi: 10.1371/journal.pbio.1000384
-
(2010)
PLoS Biol
, vol.8
, Issue.5
, pp. 1000384
-
-
De Santa, F.1
Barozzi, I.2
Mietton, F.3
Ghisletti, S.4
Polletti, S.5
Tusi, B.K.6
Muller, H.7
Ragoussis, J.8
Wei, C.L.9
Natoli, G.10
-
126
-
-
84881171344
-
Enhancer transcripts mark active estrogen receptor binding sites
-
3730096 1:STN:528:DC%2BC3sXhtlSntr%2FI 23636943
-
Hah N, Murakami S, Nagari A, Danko CG, Kraus WL (2013) Enhancer transcripts mark active estrogen receptor binding sites. Genome Res 23(8):1210-1223. doi: 10.1101/gr.152306.112
-
(2013)
Genome Res
, vol.23
, Issue.8
, pp. 1210-1223
-
-
Hah, N.1
Murakami, S.2
Nagari, A.3
Danko, C.G.4
Kraus, W.L.5
-
127
-
-
79961022267
-
Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters
-
1:STN:528:DC%2BC3MXovFyhsLc%3D
-
Koch F, Fenouil R, Gut M, Cauchy P, Albert TK, Zacarias-Cabeza J, Spicuglia S, de la Chapelle AL, Heidemann M, Hintermair C, Eick D, Gut I, Ferrier P, Andrau JC (2011) Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters. Nat Struct Mol Biol 18(8):956-963. doi: 10.1038/nsmb.2085
-
(2011)
Nat Struct Mol Biol
, vol.18
, Issue.8
, pp. 956-963
-
-
Koch, F.1
Fenouil, R.2
Gut, M.3
Cauchy, P.4
Albert, T.K.5
Zacarias-Cabeza, J.6
Spicuglia, S.7
De La Chapelle, A.L.8
Heidemann, M.9
Hintermair, C.10
Eick, D.11
Gut, I.12
Ferrier, P.13
Andrau, J.C.14
-
128
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
4108080 1:STN:528:DC%2BC3cXht1Cmu73J 20887892
-
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R, Shiekhattar R (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell 143(1):46-58. doi: 10.1016/j.cell.2010.09.001
-
(2010)
Cell
, vol.143
, Issue.1
, pp. 46-58
-
-
Orom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
Lai, F.7
Zytnicki, M.8
Notredame, C.9
Huang, Q.10
Guigo, R.11
Shiekhattar, R.12
-
129
-
-
84927559450
-
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
-
1:STN:528:DC%2BC2cXhvFKmtbbI
-
Core LJ, Martins AL, Danko CG, Waters CT, Siepel A, Lis JT (2014) Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers. Nat Genet 46(12):1311-1320. doi: 10.1038/ng.3142
-
(2014)
Nat Genet
, vol.46
, Issue.12
, pp. 1311-1320
-
-
Core, L.J.1
Martins, A.L.2
Danko, C.G.3
Waters, C.T.4
Siepel, A.5
Lis, J.T.6
-
130
-
-
79955836460
-
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
-
3099127 1:STN:528:DC%2BC3MXmtFGmtb8%3D 21549415
-
Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, Kraus WL (2011) A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell 145(4):622-634. doi: 10.1016/j.cell.2011.03.042
-
(2011)
Cell
, vol.145
, Issue.4
, pp. 622-634
-
-
Hah, N.1
Danko, C.G.2
Core, L.3
Waterfall, J.J.4
Siepel, A.5
Lis, J.T.6
Kraus, W.L.7
-
131
-
-
84873456575
-
ERNAs are required for p53-dependent enhancer activity and gene transcription
-
1:STN:528:DC%2BC3sXnvVyi
-
Melo CA, Drost J, Wijchers PJ, van de Werken H, de Wit E, Oude Vrielink JA, Elkon R, Melo SA, Leveille N, Kalluri R, de Laat W, Agami R (2013) eRNAs are required for p53-dependent enhancer activity and gene transcription. Mol Cell 49(3):524-535. doi: 10.1016/j.molcel.2012.11.021
-
(2013)
Mol Cell
, vol.49
, Issue.3
, pp. 524-535
-
-
Melo, C.A.1
Drost, J.2
Wijchers, P.J.3
Van De Werken, H.4
De Wit, E.5
Oude Vrielink, J.A.6
Elkon, R.7
Melo, S.A.8
Leveille, N.9
Kalluri, R.10
De Laat, W.11
Agami, R.12
-
132
-
-
84883756441
-
ERNAs promote transcription by establishing chromatin accessibility at defined genomic loci
-
3786356 1:STN:528:DC%2BC3sXhtlGqsrrE 23993744
-
Mousavi K, Zare H, Dell'orso S, Grontved L, Gutierrez-Cruz G, Derfoul A, Hager GL, Sartorelli V (2013) eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci. Mol Cell 51(5):606-617. doi: 10.1016/j.molcel.2013.07.022
-
(2013)
Mol Cell
, vol.51
, Issue.5
, pp. 606-617
-
-
Mousavi, K.1
Zare, H.2
Dell'Orso, S.3
Grontved, L.4
Gutierrez-Cruz, G.5
Derfoul, A.6
Hager, G.L.7
Sartorelli, V.8
-
133
-
-
84867648038
-
A noncoding RNA regulates the neurogenin1 gene locus during mouse neocortical development
-
3479495 1:STN:528:DC%2BC38Xhs1WksLzM 23027973
-
Onoguchi M, Hirabayashi Y, Koseki H, Gotoh Y (2012) A noncoding RNA regulates the neurogenin1 gene locus during mouse neocortical development. Proc Natl Acad Sci USA 109(42):16939-16944. doi: 10.1073/pnas.1202956109
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.42
, pp. 16939-16944
-
-
Onoguchi, M.1
Hirabayashi, Y.2
Koseki, H.3
Gotoh, Y.4
-
134
-
-
70149123708
-
Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
-
2722021
-
Ponjavic J, Oliver PL, Lunter G, Ponting CP (2009) Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genet 5(8):e1000617. doi: 10.1371/journal.pgen.1000617
-
(2009)
PLoS Genet
, vol.5
, Issue.8
, pp. 1000617
-
-
Ponjavic, J.1
Oliver, P.L.2
Lunter, G.3
Ponting, C.P.4
-
135
-
-
84879694221
-
Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription
-
1:STN:528:DC%2BC3sXosFWktL0%3D
-
Lam MT, Cho H, Lesch HP, Gosselin D, Heinz S, Tanaka-Oishi Y, Benner C, Kaikkonen MU, Kim AS, Kosaka M, Lee CY, Watt A, Grossman TR, Rosenfeld MG, Evans RM, Glass CK (2013) Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription. Nature 498(7455):511-515. doi: 10.1038/nature12209
-
(2013)
Nature
, vol.498
, Issue.7455
, pp. 511-515
-
-
Lam, M.T.1
Cho, H.2
Lesch, H.P.3
Gosselin, D.4
Heinz, S.5
Tanaka-Oishi, Y.6
Benner, C.7
Kaikkonen, M.U.8
Kim, A.S.9
Kosaka, M.10
Lee, C.Y.11
Watt, A.12
Grossman, T.R.13
Rosenfeld, M.G.14
Evans, R.M.15
Glass, C.K.16
-
136
-
-
84879695128
-
Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
-
3718886 1:STN:528:DC%2BC3sXosFahtro%3D 23728302
-
Li W, Notani D, Ma Q, Tanasa B, Nunez E, Chen AY, Merkurjev D, Zhang J, Ohgi K, Song X, Oh S, Kim HS, Glass CK, Rosenfeld MG (2013) Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation. Nature 498(7455):516-520. doi: 10.1038/nature12210
-
(2013)
Nature
, vol.498
, Issue.7455
, pp. 516-520
-
-
Li, W.1
Notani, D.2
Ma, Q.3
Tanasa, B.4
Nunez, E.5
Chen, A.Y.6
Merkurjev, D.7
Zhang, J.8
Ohgi, K.9
Song, X.10
Oh, S.11
Kim, H.S.12
Glass, C.K.13
Rosenfeld, M.G.14
-
137
-
-
79959198166
-
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
-
3117022 1:STN:528:DC%2BC3MXmsFyqsrw%3D 21572438
-
Wang D, Garcia-Bassets I, Benner C, Li W, Su X, Zhou Y, Qiu J, Liu W, Kaikkonen MU, Ohgi KA, Glass CK, Rosenfeld MG, Fu XD (2011) Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature 474(7351):390-394. doi: 10.1038/nature10006
-
(2011)
Nature
, vol.474
, Issue.7351
, pp. 390-394
-
-
Wang, D.1
Garcia-Bassets, I.2
Benner, C.3
Li, W.4
Su, X.5
Zhou, Y.6
Qiu, J.7
Liu, W.8
Kaikkonen, M.U.9
Ohgi, K.A.10
Glass, C.K.11
Rosenfeld, M.G.12
Fu, X.D.13
-
138
-
-
84869502375
-
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
-
3501570 1:STN:528:DC%2BC38XhsV2rsb%2FL 23064439
-
Lin YC, Benner C, Mansson R, Heinz S, Miyazaki K, Miyazaki M, Chandra V, Bossen C, Glass CK, Murre C (2012) Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate. Nat Immunol 13(12):1196-1204. doi: 10.1038/ni.2432
-
(2012)
Nat Immunol
, vol.13
, Issue.12
, pp. 1196-1204
-
-
Lin, Y.C.1
Benner, C.2
Mansson, R.3
Heinz, S.4
Miyazaki, K.5
Miyazaki, M.6
Chandra, V.7
Bossen, C.8
Glass, C.K.9
Murre, C.10
-
139
-
-
80052972698
-
The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin
-
3176448 1:STN:528:DC%2BC3MXhtFymsLvL 21925392
-
Bertani S, Sauer S, Bolotin E, Sauer F (2011) The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin. Mol Cell 43(6):1040-1046. doi: 10.1016/j.molcel.2011.08.019
-
(2011)
Mol Cell
, vol.43
, Issue.6
, pp. 1040-1046
-
-
Bertani, S.1
Sauer, S.2
Bolotin, E.3
Sauer, F.4
-
140
-
-
84874025014
-
The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-gamma locus
-
3577098 1:STN:528:DC%2BC3sXis1Oiu7c%3D 23415224
-
Gomez JA, Wapinski OL, Yang YW, Bureau JF, Gopinath S, Monack DM, Chang HY, Brahic M, Kirkegaard K (2013) The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-gamma locus. Cell 152(4):743-754. doi: 10.1016/j.cell.2013.01.015
-
(2013)
Cell
, vol.152
, Issue.4
, pp. 743-754
-
-
Gomez, J.A.1
Wapinski, O.L.2
Yang, Y.W.3
Bureau, J.F.4
Gopinath, S.5
Monack, D.M.6
Chang, H.Y.7
Brahic, M.8
Kirkegaard, K.9
-
141
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
3670758 1:STN:528:DC%2BC3MXjsVKrsro%3D 21423168
-
Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, Chen Y, Lajoie BR, Protacio A, Flynn RA, Gupta RA, Wysocka J, Lei M, Dekker J, Helms JA, Chang HY (2011) A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature 472(7341):120-124. doi: 10.1038/nature09819
-
(2011)
Nature
, vol.472
, Issue.7341
, pp. 120-124
-
-
Wang, K.C.1
Yang, Y.W.2
Liu, B.3
Sanyal, A.4
Corces-Zimmerman, R.5
Chen, Y.6
Lajoie, B.R.7
Protacio, A.8
Flynn, R.A.9
Gupta, R.A.10
Wysocka, J.11
Lei, M.12
Dekker, J.13
Helms, J.A.14
Chang, H.Y.15
-
142
-
-
84863694027
-
Abd-A regulation by the iab-8 noncoding RNA
-
3359974 1:STN:528:DC%2BC38XotV2jsrk%3D 22654672
-
Gummalla M, Maeda RK, Castro Alvarez JJ, Gyurkovics H, Singari S, Edwards KA, Karch F, Bender W (2012) abd-A regulation by the iab-8 noncoding RNA. PLoS Genet 8(5):e1002720. doi: 10.1371/journal.pgen.1002720
-
(2012)
PLoS Genet
, vol.8
, Issue.5
, pp. 1002720
-
-
Gummalla, M.1
Maeda, R.K.2
Castro Alvarez, J.J.3
Gyurkovics, H.4
Singari, S.5
Edwards, K.A.6
Karch, F.7
Bender, W.8
-
143
-
-
33845452031
-
Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference
-
1866366 1:STN:528:DC%2BD2sXhs1ensg%3D%3D 17174895
-
Petruk S, Sedkov Y, Riley KM, Hodgson J, Schweisguth F, Hirose S, Jaynes JB, Brock HW, Mazo A (2006) Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference. Cell 127(6):1209-1221. doi: 10.1016/j.cell.2006.10.039
-
(2006)
Cell
, vol.127
, Issue.6
, pp. 1209-1221
-
-
Petruk, S.1
Sedkov, Y.2
Riley, K.M.3
Hodgson, J.4
Schweisguth, F.5
Hirose, S.6
Jaynes, J.B.7
Brock, H.W.8
Mazo, A.9
-
144
-
-
84884962472
-
Transcription through enhancers suppresses their activity in Drosophila
-
3852481 1:STN:528:DC%2BC3sXhvVegsr%2FE 24279291
-
Erokhin M, Davydova A, Parshikov A, Studitsky VM, Georgiev P, Chetverina D (2013) Transcription through enhancers suppresses their activity in Drosophila. Epigenetics Chromatin 6(1):31. doi: 10.1186/1756-8935-6-31
-
(2013)
Epigenetics Chromatin
, vol.6
, Issue.1
, pp. 31
-
-
Erokhin, M.1
Davydova, A.2
Parshikov, A.3
Studitsky, V.M.4
Georgiev, P.5
Chetverina, D.6
-
145
-
-
80054684399
-
Long non-coding RNA modifies chromatin: Epigenetic silencing by long non-coding RNAs
-
3258546 1:STN:528:DC%2BC3MXhtlagtrbF 21915889
-
Saxena A, Carninci P (2011) Long non-coding RNA modifies chromatin: epigenetic silencing by long non-coding RNAs. BioEssays 33(11):830-839. doi: 10.1002/bies.201100084
-
(2011)
BioEssays
, vol.33
, Issue.11
, pp. 830-839
-
-
Saxena, A.1
Carninci, P.2
-
146
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
2704857 1:STN:528:DC%2BD1MXptVWjsr0%3D 19571010
-
Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, Thomas K, Presser A, Bernstein BE, van Oudenaarden A, Regev A, Lander ES, Rinn JL (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci USA 106(28):11667-11672. doi: 10.1073/pnas.0904715106
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.28
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
Van Oudenaarden, A.10
Regev, A.11
Lander, E.S.12
Rinn, J.L.13
-
147
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
1:STN:528:DC%2BC3cXhsFKlsr%2FO
-
Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J (2011) A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470(7333):279-283. doi: 10.1038/nature09692
-
(2011)
Nature
, vol.470
, Issue.7333
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
148
-
-
80051564877
-
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
-
3149494 1:STN:528:DC%2BC3MXpvFeqs7s%3D 21632746
-
Zentner GE, Tesar PJ, Scacheri PC (2011) Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res 21(8):1273-1283. doi: 10.1101/gr.122382.111
-
(2011)
Genome Res
, vol.21
, Issue.8
, pp. 1273-1283
-
-
Zentner, G.E.1
Tesar, P.J.2
Scacheri, P.C.3
-
149
-
-
0022351149
-
A distant gene deletion affects beta-globin gene function in an atypical gamma delta beta-thalassemia
-
424127 1:STN:528:DyaL2MXlvFSrtrk%3D 2997283
-
Curtin P, Pirastu M, Kan YW, Gobert-Jones JA, Stephens AD, Lehmann H (1985) A distant gene deletion affects beta-globin gene function in an atypical gamma delta beta-thalassemia. J Clin Investig 76(4):1554-1558. doi: 10.1172/JCI112136
-
(1985)
J Clin Investig
, vol.76
, Issue.4
, pp. 1554-1558
-
-
Curtin, P.1
Pirastu, M.2
Kan, Y.W.3
Gobert-Jones, J.A.4
Stephens, A.D.5
Lehmann, H.6
-
150
-
-
0012953756
-
Gamma delta beta-thalassemia due to a de novo mutation deleting the 5′ beta-globin gene activation-region hypersensitive sites
-
298086 1:STN:528:DyaK3cXlsFOi 2798417
-
Driscoll MC, Dobkin CS, Alter BP (1989) Gamma delta beta-thalassemia due to a de novo mutation deleting the 5′ beta-globin gene activation-region hypersensitive sites. Proc Natl Acad Sci USA 86(19):7470-7474
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, Issue.19
, pp. 7470-7474
-
-
Driscoll, M.C.1
Dobkin, C.S.2
Alter, B.P.3
-
151
-
-
0021014396
-
Beta-globin gene inactivation by DNA translocation in gamma beta-thalassaemia
-
1:STN:528:DyaL2cXjtVChsA%3D%3D6318113
-
Kioussis D, Vanin E, deLange T, Flavell RA, Grosveld FG (1983) Beta-globin gene inactivation by DNA translocation in gamma beta-thalassaemia. Nature 306(5944):662-666
-
(1983)
Nature
, vol.306
, Issue.5944
, pp. 662-666
-
-
Kioussis, D.1
Vanin, E.2
Delange, T.3
Flavell, R.A.4
Grosveld, F.G.5
-
152
-
-
84863869789
-
Human limb abnormalities caused by disruption of hedgehog signaling
-
1:STN:528:DC%2BC38XlvFylu74%3D
-
Anderson E, Peluso S, Lettice LA, Hill RE (2012) Human limb abnormalities caused by disruption of hedgehog signaling. Trends Genet 28(8):364-373. doi: 10.1016/j.tig.2012.03.012
-
(2012)
Trends Genet
, vol.28
, Issue.8
, pp. 364-373
-
-
Anderson, E.1
Peluso, S.2
Lettice, L.A.3
Hill, R.E.4
-
153
-
-
17244383525
-
A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk
-
1:STN:528:DC%2BD2MXjtFOms70%3D
-
Emison ES, McCallion AS, Kashuk CS, Bush RT, Grice E, Lin S, Portnoy ME, Cutler DJ, Green ED, Chakravarti A (2005) A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk. Nature 434(7035):857-863. doi: 10.1038/nature03467
-
(2005)
Nature
, vol.434
, Issue.7035
, pp. 857-863
-
-
Emison, E.S.1
McCallion, A.S.2
Kashuk, C.S.3
Bush, R.T.4
Grice, E.5
Lin, S.6
Portnoy, M.E.7
Cutler, D.J.8
Green, E.D.9
Chakravarti, A.10
-
154
-
-
84888622954
-
Pathways systematically associated to Hirschsprung's disease
-
3879038
-
Fernandez RM, Bleda M, Luzon-Toro B, Garcia-Alonso L, Arnold S, Sribudiani Y, Besmond C, Lantieri F, Doan B, Ceccherini I, Lyonnet S, Hofstra RM, Chakravarti A, Antinolo G, Dopazo J, Borrego S (2013) Pathways systematically associated to Hirschsprung's disease. Orphanet J Rare Dis 8:187. doi: 10.1186/1750-1172-8-187
-
(2013)
Orphanet J Rare Dis
, vol.8
, pp. 187
-
-
Fernandez, R.M.1
Bleda, M.2
Luzon-Toro, B.3
Garcia-Alonso, L.4
Arnold, S.5
Sribudiani, Y.6
Besmond, C.7
Lantieri, F.8
Doan, B.9
Ceccherini, I.10
Lyonnet, S.11
Hofstra, R.M.12
Chakravarti, A.13
Antinolo, G.14
Dopazo, J.15
Borrego, S.16
-
155
-
-
18244403197
-
Identification of a 52 kb deletion downstream of the SOST gene in patients with van Buchem disease
-
1735035 1:STN:528:DC%2BD38XitV2itbo%3D 11836356
-
Balemans W, Patel N, Ebeling M, Van Hul E, Wuyts W, Lacza C, Dioszegi M, Dikkers FG, Hildering P, Willems PJ, Verheij JB, Lindpaintner K, Vickery B, Foernzler D, Van Hul W (2002) Identification of a 52 kb deletion downstream of the SOST gene in patients with van Buchem disease. J Med Genet 39(2):91-97
-
(2002)
J Med Genet
, vol.39
, Issue.2
, pp. 91-97
-
-
Balemans, W.1
Patel, N.2
Ebeling, M.3
Van Hul, E.4
Wuyts, W.5
Lacza, C.6
Dioszegi, M.7
Dikkers, F.G.8
Hildering, P.9
Willems, P.J.10
Verheij, J.B.11
Lindpaintner, K.12
Vickery, B.13
Foernzler, D.14
Van Hul, W.15
-
156
-
-
18444400214
-
A 52-kb deletion in the SOST-MEOX1 intergenic region on 17q12-q21 is associated with van Buchem disease in the Dutch population
-
12116252
-
Staehling-Hampton K, Proll S, Paeper BW, Zhao L, Charmley P, Brown A, Gardner JC, Galas D, Schatzman RC, Beighton P, Papapoulos S, Hamersma H, Brunkow ME (2002) A 52-kb deletion in the SOST-MEOX1 intergenic region on 17q12-q21 is associated with van Buchem disease in the Dutch population. Am J Med Genet 110(2):144-152. doi: 10.1002/ajmg.10401
-
(2002)
Am J Med Genet
, vol.110
, Issue.2
, pp. 144-152
-
-
Staehling-Hampton, K.1
Proll, S.2
Paeper, B.W.3
Zhao, L.4
Charmley, P.5
Brown, A.6
Gardner, J.C.7
Galas, D.8
Schatzman, R.C.9
Beighton, P.10
Papapoulos, S.11
Hamersma, H.12
Brunkow, M.E.13
-
157
-
-
22244474640
-
Genomic deletion of a long-range bone enhancer misregulates sclerostin in Van Buchem disease
-
1172036 1:STN:528:DC%2BD2MXmsVeisrY%3D 15965026
-
Loots GG, Kneissel M, Keller H, Baptist M, Chang J, Collette NM, Ovcharenko D, Plajzer-Frick I, Rubin EM (2005) Genomic deletion of a long-range bone enhancer misregulates sclerostin in Van Buchem disease. Genome Res 15(7):928-935. doi: 10.1101/gr.3437105
-
(2005)
Genome Res
, vol.15
, Issue.7
, pp. 928-935
-
-
Loots, G.G.1
Kneissel, M.2
Keller, H.3
Baptist, M.4
Chang, J.5
Collette, N.M.6
Ovcharenko, D.7
Plajzer-Frick, I.8
Rubin, E.M.9
-
158
-
-
84865552981
-
Targeted deletion of Sost distal enhancer increases bone formation and bone mass
-
3435175 1:STN:528:DC%2BC38XhsVegt7nL 22886088
-
Collette NM, Genetos DC, Economides AN, Xie L, Shahnazari M, Yao W, Lane NE, Harland RM, Loots GG (2012) Targeted deletion of Sost distal enhancer increases bone formation and bone mass. Proc Natl Acad Sci USA 109(35):14092-14097. doi: 10.1073/pnas.1207188109
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.35
, pp. 14092-14097
-
-
Collette, N.M.1
Genetos, D.C.2
Economides, A.N.3
Xie, L.4
Shahnazari, M.5
Yao, W.6
Lane, N.E.7
Harland, R.M.8
Loots, G.G.9
-
159
-
-
53049110907
-
Facioscapulohumeral muscular dystrophy
-
2628543 1:STN:528:DC%2BD1cXhsVWlsbbJ 19019312
-
Tawil R (2008) Facioscapulohumeral muscular dystrophy. Neurotherapeutics 5(4):601-606. doi: 10.1016/j.nurt.2008.07.005
-
(2008)
Neurotherapeutics
, vol.5
, Issue.4
, pp. 601-606
-
-
Tawil, R.1
-
160
-
-
0026922062
-
Chromosome 4q DNA rearrangements associated with facioscapulohumeral muscular dystrophy
-
1:STN:528:DyaK3sXltVCm1363881
-
Wijmenga C, Hewitt JE, Sandkuijl LA, Clark LN, Wright TJ, Dauwerse HG, Gruter AM, Hofker MH, Moerer P, Williamson R et al (1992) Chromosome 4q DNA rearrangements associated with facioscapulohumeral muscular dystrophy. Nat Genet 2(1):26-30
-
(1992)
Nat Genet
, vol.2
, Issue.1
, pp. 26-30
-
-
Wijmenga, C.1
Hewitt, J.E.2
Sandkuijl, L.A.3
Clark, L.N.4
Wright, T.J.5
Dauwerse, H.G.6
Gruter, A.M.7
Hofker, M.H.8
Moerer, P.9
Williamson, R.10
-
161
-
-
0027744223
-
FSHD associated DNA rearrangements are due to deletions of integral copies of a 3.2 kb tandemly repeated unit
-
8111371
-
van Deutekom JC, Wijmenga C, van Tienhoven EA, Gruter AM, Hewitt JE, Padberg GW, van Ommen GJ, Hofker MH, Frants RR (1993) FSHD associated DNA rearrangements are due to deletions of integral copies of a 3.2 kb tandemly repeated unit. Hum Mol Genet 2(12):2037-2042
-
(1993)
Hum Mol Genet
, vol.2
, Issue.12
, pp. 2037-2042
-
-
Van Deutekom, J.C.1
Wijmenga, C.2
Van Tienhoven, E.A.3
Gruter, A.M.4
Hewitt, J.E.5
Padberg, G.W.6
Van Ommen, G.J.7
Hofker, M.H.8
Frants, R.R.9
-
162
-
-
33646485687
-
Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts
-
1459005 1:STN:528:DC%2BD28XkslCksbc%3D 16632607
-
Petrov A, Pirozhkova I, Laoudj D, Carnac G, Lipinski M, Vassetzky YS (2006) Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts. Proc Natl Acad Sci USA 103:6982-6987
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6982-6987
-
-
Petrov, A.1
Pirozhkova, I.2
Laoudj, D.3
Carnac, G.4
Lipinski, M.5
Vassetzky, Y.S.6
-
163
-
-
9444294990
-
Genetics and epigenetics of progressive fascioscapulohumeral (landouzy-dejerine) muscular dystrophy
-
1:STN:528:DC%2BD3sXhtlahsL0%3D
-
Petrov AP, Laoudj D, Vassetzky YS (2003) Genetics and epigenetics of progressive fascioscapulohumeral (landouzy-dejerine) muscular dystrophy. Genetics (Moscow) 39(2):147-151
-
(2003)
Genetics (Moscow)
, vol.39
, Issue.2
, pp. 147-151
-
-
Petrov, A.P.1
Laoudj, D.2
Vassetzky, Y.S.3
-
164
-
-
38049094992
-
A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: Implications for the facio-scapulo-humeral dystrophy
-
2134777 1:STN:528:DC%2BD1cXnvFyl 18032730
-
Petrov AV, Allinne J, Pirozhkova IV, Laoudj D, Lipinski M, Vassetzky YS (2008) A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: implications for the facio-scapulo-humeral dystrophy. Genome Res 18(1):39-45
-
(2008)
Genome Res
, vol.18
, Issue.1
, pp. 39-45
-
-
Petrov, A.V.1
Allinne, J.2
Pirozhkova, I.V.3
Laoudj, D.4
Lipinski, M.5
Vassetzky, Y.S.6
-
165
-
-
0344436078
-
Nucleotide sequence of the partially deleted D4Z4 locus in a patient with FSHD identifies a putative gene within each 3.3 kb element
-
1:STN:528:DyaK1MXls1Oru78%3D10433963
-
Gabriels J, Beckers MC, Ding H, De Vriese A, Plaisance S, van der Maarel SM, Padberg GW, Frants RR, Hewitt JE, Collen D, Belayew A (1999) Nucleotide sequence of the partially deleted D4Z4 locus in a patient with FSHD identifies a putative gene within each 3.3 kb element. Gene 236(1):25-32
-
(1999)
Gene
, vol.236
, Issue.1
, pp. 25-32
-
-
Gabriels, J.1
Beckers, M.C.2
Ding, H.3
De Vriese, A.4
Plaisance, S.5
Van Der Maarel, S.M.6
Padberg, G.W.7
Frants, R.R.8
Hewitt, J.E.9
Collen, D.10
Belayew, A.11
-
166
-
-
0032862871
-
The FSHD region on human chromosome 4q35 contains potential coding regions among pseudogenes and a high density of repeat elements
-
van Geel M, Heather LJ, Lyle R, Hewitt JE, Frants RR, de Jong PJ (1999) The FSHD region on human chromosome 4q35 contains potential coding regions among pseudogenes and a high density of repeat elements. Genomics 61(1):55-65
-
(1999)
Genomics
, vol.61
, Issue.1
, pp. 55-65
-
-
Van Geel, M.1
Heather, L.J.2
Lyle, R.3
Hewitt, J.E.4
Frants, R.R.5
De Jong, P.J.6
-
167
-
-
58849093548
-
Pearls in the junk: Dissecting the molecular pathogenesis of facioscapulohumeral muscular dystrophy
-
18974002
-
Dmitriev P, Lipinski M, Vassetzky YS (2009) Pearls in the junk: dissecting the molecular pathogenesis of facioscapulohumeral muscular dystrophy. Neuromuscul Disord 19:17-20. doi: 10.1016/j.nmd.2008.09.004
-
(2009)
Neuromuscul Disord
, vol.19
, pp. 17-20
-
-
Dmitriev, P.1
Lipinski, M.2
Vassetzky, Y.S.3
-
168
-
-
84902517476
-
Facioscapulohumeral dystrophy: The path to consensus on pathophysiology
-
4060068
-
Tawil R, van der Maarel SM, Tapscott SJ (2014) Facioscapulohumeral dystrophy: the path to consensus on pathophysiology. Skelet Muscle 4:12. doi: 10.1186/2044-5040-4-12
-
(2014)
Skelet Muscle
, vol.4
, pp. 12
-
-
Tawil, R.1
Van Der Maarel, S.M.2
Tapscott, S.J.3
-
169
-
-
84455169950
-
The Krüppel-like factor KLF15 is a key actor in upregulation of the 4q35 genes DUX4c and FRG2 in FSHD muscles
-
Dmitriev P, Petrov A, Ansseau E, Charron S, Coppée F, Belayew A, Carnac G, Turki A, Laoudj D, Lipinski M, Vassetzky YS (2011) The Krüppel-like factor KLF15 is a key actor in upregulation of the 4q35 genes DUX4c and FRG2 in FSHD muscles. J Biol Chem. doi: 10.1074/jbc.M1111.254052
-
(2011)
J Biol Chem
-
-
Dmitriev P, P.1
-
170
-
-
84860885909
-
A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy
-
3350859 1:STN:528:DC%2BC38Xmt1Gqs7Y%3D 22541069
-
Cabianca DS, Casa V, Bodega B, Xynos A, Ginelli E, Tanaka Y, Gabellini D (2012) A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy. Cell 149(4):819-831. doi: 10.1016/j.cell.2012.03.035
-
(2012)
Cell
, vol.149
, Issue.4
, pp. 819-831
-
-
Cabianca, D.S.1
Casa, V.2
Bodega, B.3
Xynos, A.4
Ginelli, E.5
Tanaka, Y.6
Gabellini, D.7
-
171
-
-
84890277215
-
Defective regulation of microRNA target genes in myoblasts from facioscapulohumeral dystrophy patients
-
3853252 1:STN:528:DC%2BC3sXhvFWrtrjJ 24145033
-
Dmitriev P, Stankevicins L, Ansseau E, Petrov A, Barat A, Dessen P, Robert T, Turki A, Lazar V, Labourer E, Belayew A, Carnac G, Laoudj-Chenivesse D, Lipinski M, Vassetzky YS (2013) Defective regulation of microRNA target genes in myoblasts from facioscapulohumeral dystrophy patients. J Biol Chem 288(49):34989-35002. doi: 10.1074/jbc.M113.504522
-
(2013)
J Biol Chem
, vol.288
, Issue.49
, pp. 34989-35002
-
-
Dmitriev, P.1
Stankevicins, L.2
Ansseau, E.3
Petrov, A.4
Barat, A.5
Dessen, P.6
Robert, T.7
Turki, A.8
Lazar, V.9
Labourer, E.10
Belayew, A.11
Carnac, G.12
Laoudj-Chenivesse, D.13
Lipinski, M.14
Vassetzky, Y.S.15
-
172
-
-
84890314164
-
Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia
-
3852925 1:STN:528:DC%2BC3sXhvVKisbrL 24290376
-
Bhatia S, Bengani H, Fish M, Brown A, Divizia MT, de Marco R, Damante G, Grainger R, van Heyningen V, Kleinjan DA (2013) Disruption of autoregulatory feedback by a mutation in a remote, ultraconserved PAX6 enhancer causes aniridia. Am J Hum Genet 93(6):1126-1134. doi: 10.1016/j.ajhg.2013.10.028
-
(2013)
Am J Hum Genet
, vol.93
, Issue.6
, pp. 1126-1134
-
-
Bhatia, S.1
Bengani, H.2
Fish, M.3
Brown, A.4
Divizia, M.T.5
De Marco, R.6
Damante, G.7
Grainger, R.8
Van Heyningen, V.9
Kleinjan, D.A.10
-
173
-
-
79955471262
-
Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease
-
3083485 1:STN:528:DC%2BC3MXjvVOgsr4%3D 21441919
-
Ghiasvand NM, Rudolph DD, Mashayekhi M, Brzezinski JAt, Goldman D, Glaser T (2011) Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease. Nat Neurosci 14(5):578-586. doi: 10.1038/nn.2798
-
(2011)
Nat Neurosci
, vol.14
, Issue.5
, pp. 578-586
-
-
Ghiasvand, N.M.1
Rudolph, D.D.2
Mashayekhi, M.3
Brzezinski, J.4
Goldman, D.5
Glaser, T.6
-
174
-
-
33846617772
-
Long-range conserved non-coding SHOX sequences regulate expression in developing chicken limb and are associated with short stature phenotypes in human patients
-
1:STN:528:DC%2BD2sXhtVKkt7w%3D
-
Sabherwal N, Bangs F, Roth R, Weiss B, Jantz K, Tiecke E, Hinkel GK, Spaich C, Hauffa BP, van der Kamp H, Kapeller J, Tickle C, Rappold G (2007) Long-range conserved non-coding SHOX sequences regulate expression in developing chicken limb and are associated with short stature phenotypes in human patients. Hum Mol Genet 16(2):210-222. doi: 10.1093/hmg/ddl470
-
(2007)
Hum Mol Genet
, vol.16
, Issue.2
, pp. 210-222
-
-
Sabherwal, N.1
Bangs, F.2
Roth, R.3
Weiss, B.4
Jantz, K.5
Tiecke, E.6
Hinkel, G.K.7
Spaich, C.8
Hauffa, B.P.9
Van Der Kamp, H.10
Kapeller, J.11
Tickle, C.12
Rappold, G.13
-
175
-
-
79955934874
-
Potential novel mechanism for Axenfeld-Rieger syndrome: Deletion of a distant region containing regulatory elements of PITX2
-
3101680 1:STN:528:DC%2BC3MXmslSqu78%3D 20881290
-
Volkmann BA, Zinkevich NS, Mustonen A, Schilter KF, Bosenko DV, Reis LM, Broeckel U, Link BA, Semina EV (2011) Potential novel mechanism for Axenfeld-Rieger syndrome: deletion of a distant region containing regulatory elements of PITX2. Invest Ophthalmol Vis Sci 52(3):1450-1459. doi: 10.1167/iovs.10-6060
-
(2011)
Invest Ophthalmol Vis Sci
, vol.52
, Issue.3
, pp. 1450-1459
-
-
Volkmann, B.A.1
Zinkevich, N.S.2
Mustonen, A.3
Schilter, K.F.4
Bosenko, D.V.5
Reis, L.M.6
Broeckel, U.7
Link, B.A.8
Semina, E.V.9
-
176
-
-
79951473520
-
9p21 DNA variants associated with coronary artery disease impair interferon-gamma signalling response
-
3079517 1:STN:528:DC%2BC3MXhslWrsLY%3D 21307941
-
Harismendy O, Notani D, Song X, Rahim NG, Tanasa B, Heintzman N, Ren B, Fu XD, Topol EJ, Rosenfeld MG, Frazer KA (2011) 9p21 DNA variants associated with coronary artery disease impair interferon-gamma signalling response. Nature 470(7333):264-268. doi: 10.1038/nature09753
-
(2011)
Nature
, vol.470
, Issue.7333
, pp. 264-268
-
-
Harismendy, O.1
Notani, D.2
Song, X.3
Rahim, N.G.4
Tanasa, B.5
Heintzman, N.6
Ren, B.7
Fu, X.D.8
Topol, E.J.9
Rosenfeld, M.G.10
Frazer, K.A.11
-
177
-
-
84864624041
-
Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus
-
3409257 1:STN:528:DC%2BC38XhtFOnsL3P 22665440
-
Zhang X, Cowper-Sal-lari R, Bailey SD, Moore JH, Lupien M (2012) Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus. Genome Res 22(8):1437-1446. doi: 10.1101/gr.135665.111
-
(2012)
Genome Res
, vol.22
, Issue.8
, pp. 1437-1446
-
-
Zhang, X.1
Cowper-Sal-Lari, R.2
Bailey, S.D.3
Moore, J.H.4
Lupien, M.5
-
178
-
-
84880449489
-
GATA2 haploinsufficiency caused by mutations in a conserved intronic element leads to MonoMAC syndrome
-
Hsu AP, Johnson KD, Falcone EL, Sanalkumar R, Sanchez L, Hickstein DD, Cuellar-Rodriguez J, Lemieux JE, Zerbe CS, Bresnick EH, Holland SM (2013) GATA2 haploinsufficiency caused by mutations in a conserved intronic element leads to MonoMAC syndrome. Blood 121(19):3830-3837, S3831-3837. doi: 10.1182/blood-2012-08-452763
-
(2013)
Blood
, vol.121
, Issue.19
-
-
Hsu, A.P.1
Johnson, K.D.2
Falcone, E.L.3
Sanalkumar, R.4
Sanchez, L.5
Hickstein, D.D.6
Cuellar-Rodriguez, J.7
Lemieux, J.E.8
Zerbe, C.S.9
Bresnick, E.H.10
Holland, S.M.11
-
179
-
-
84899924140
-
Translocations affecting human immunoglobulin heavy chain locus
-
Sklyar I, Iarovaia OI, Lipinski M, Vassetzky YS (2014) Translocations affecting human immunoglobulin heavy chain locus. Biopolym Cell 30(2):91-95. doi: 10.7124/bc.000886
-
(2014)
Biopolym Cell
, vol.30
, Issue.2
, pp. 91-95
-
-
Sklyar, I.1
Iarovaia, O.I.2
Lipinski, M.3
Vassetzky, Y.S.4
-
180
-
-
72049100181
-
Long-range oncogenic activation of Igh-c-myc translocations by the Igh 3′ regulatory region
-
2802177 1:STN:528:DC%2BD1MXhsFersrnF 20010689
-
Gostissa M, Yan CT, Bianco JM, Cogne M, Pinaud E, Alt FW (2009) Long-range oncogenic activation of Igh-c-myc translocations by the Igh 3′ regulatory region. Nature 462(7274):803-807. doi: 10.1038/nature08633
-
(2009)
Nature
, vol.462
, Issue.7274
, pp. 803-807
-
-
Gostissa, M.1
Yan, C.T.2
Bianco, J.M.3
Cogne, M.4
Pinaud, E.5
Alt, F.W.6
-
181
-
-
84897485006
-
Perinucleolar relocalization and nucleolin as crucial events in the transcriptional activation of key genes in mantle cell lymphoma
-
1:STN:528:DC%2BC2cXlvFCqtrY%3D
-
Allinne J, Pichugin A, Iarovaia O, Klibi M, Barat A, Zlotek-Zlotkiewicz E, Markozashvili D, Petrova N, Camara-Clayette V, Ioudinkova E, Wiels J, Razin SV, Ribrag V, Lipinski M, Vassetzky YS (2014) Perinucleolar relocalization and nucleolin as crucial events in the transcriptional activation of key genes in mantle cell lymphoma. Blood 123(13):2044-2053. doi: 10.1182/blood-2013-06-510511
-
(2014)
Blood
, vol.123
, Issue.13
, pp. 2044-2053
-
-
Allinne, J.1
Pichugin, A.2
Iarovaia, O.3
Klibi, M.4
Barat, A.5
Zlotek-Zlotkiewicz, E.6
Markozashvili, D.7
Petrova, N.8
Camara-Clayette, V.9
Ioudinkova, E.10
Wiels, J.11
Razin, S.V.12
Ribrag, V.13
Lipinski, M.14
Vassetzky, Y.S.15
-
182
-
-
84864409623
-
HIV: Implication in Burkitt lymphoma
-
1:STN:528:DC%2BC38XhsVCrtrvM
-
Tsfasman T, Klibi M, Pichugin A, Lipinski M, Vassetzky YS (2012) HIV: implication in Burkitt lymphoma. Biopolym Cell 28:285-288. doi: 10.7124/bc.00005B
-
(2012)
Biopolym Cell
, vol.28
, pp. 285-288
-
-
Tsfasman, T.1
Klibi, M.2
Pichugin, A.3
Lipinski, M.4
Vassetzky, Y.S.5
-
183
-
-
0025096741
-
Mutation of the core or adjacent LVb elements of the Moloney murine leukemia virus enhancer alters disease specificity
-
1:STN:528:DyaK3cXhsFaltbc%3D2338244
-
Speck NA, Renjifo B, Golemis E, Fredrickson TN, Hartley JW, Hopkins N (1990) Mutation of the core or adjacent LVb elements of the Moloney murine leukemia virus enhancer alters disease specificity. Genes Dev 4(2):233-242
-
(1990)
Genes Dev
, vol.4
, Issue.2
, pp. 233-242
-
-
Speck, N.A.1
Renjifo, B.2
Golemis, E.3
Fredrickson, T.N.4
Hartley, J.W.5
Hopkins, N.6
-
184
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Genomes Project C, Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA (2010) A map of human genome variation from population-scale sequencing. Nature 467(7319):1061-1073. doi: 10.1038/nature09534
-
(2010)
Nature
, vol.467
, Issue.7319
-
-
Abecasis, G.R.1
Altshuler, D.2
Auton, A.3
Brooks, L.D.4
Durbin, R.M.5
Gibbs, R.A.6
Hurles, M.E.7
McVean, G.A.8
-
185
-
-
84865822182
-
Systematic localization of common disease-associated variation in regulatory DNA
-
3771521 1:STN:528:DC%2BC38Xht1ylsLfL 22955828
-
Maurano MT, Humbert R, Rynes E, Thurman RE, Haugen E, Wang H, Reynolds AP, Sandstrom R, Qu H, Brody J, Shafer A, Neri F, Lee K, Kutyavin T, Stehling-Sun S, Johnson AK, Canfield TK, Giste E, Diegel M, Bates D, Hansen RS, Neph S, Sabo PJ, Heimfeld S, Raubitschek A, Ziegler S, Cotsapas C, Sotoodehnia N, Glass I, Sunyaev SR, Kaul R, Stamatoyannopoulos JA (2012) Systematic localization of common disease-associated variation in regulatory DNA. Science 337(6099):1190-1195. doi: 10.1126/science.1222794
-
(2012)
Science
, vol.337
, Issue.6099
, pp. 1190-1195
-
-
Maurano, M.T.1
Humbert, R.2
Rynes, E.3
Thurman, R.E.4
Haugen, E.5
Wang, H.6
Reynolds, A.P.7
Sandstrom, R.8
Qu, H.9
Brody, J.10
Shafer, A.11
Neri, F.12
Lee, K.13
Kutyavin, T.14
Stehling-Sun, S.15
Johnson, A.K.16
Canfield, T.K.17
Giste, E.18
Diegel, M.19
Bates, D.20
Hansen, R.S.21
Neph, S.22
Sabo, P.J.23
Heimfeld, S.24
Raubitschek, A.25
Ziegler, S.26
Cotsapas, C.27
Sotoodehnia, N.28
Glass, I.29
Sunyaev, S.R.30
Kaul, R.31
Stamatoyannopoulos, J.A.32
more..
-
186
-
-
84897459814
-
An atlas of active enhancers across human cell types and tissues
-
Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C, Suzuki T, Ntini E, Arner E, Valen E, Li K, Schwarzfischer L, Glatz D, Raithel J, Lilje B, Rapin N, Bagger FO, Jorgensen M, Andersen PR, Bertin N, Rackham O, Burroughs AM, Baillie JK, Ishizu Y, Shimizu Y, Furuhata E, Maeda S, Negishi Y, Mungall CJ, Meehan TF, Lassmann T, Itoh M, Kawaji H, Kondo N, Kawai J, Lennartsson A, Daub CO, Heutink P, Hume DA, Jensen TH, Suzuki H, Hayashizaki Y, Muller F, Consortium F, Forrest AR, Carninci P, Rehli M, Sandelin A (2014) An atlas of active enhancers across human cell types and tissues. Nature 507(7493):455-461. doi: 10.1038/nature12787
-
(2014)
Nature
, vol.507
, Issue.7493
, pp. 455-461
-
-
Andersson, R.1
Gebhard, C.2
Miguel-Escalada, I.3
Hoof, I.4
Bornholdt, J.5
Boyd, M.6
Chen, Y.7
Zhao, X.8
Schmidl, C.9
Suzuki, T.10
Ntini, E.11
Arner, E.12
Valen, E.13
Li, K.14
Schwarzfischer, L.15
Glatz, D.16
Raithel, J.17
Lilje, B.18
Rapin, N.19
Bagger, F.O.20
Jorgensen, M.21
Andersen, P.R.22
Bertin, N.23
Rackham, O.24
Burroughs, A.M.25
Baillie, J.K.26
Ishizu, Y.27
Shimizu, Y.28
Furuhata, E.29
Maeda, S.30
Negishi, Y.31
Mungall, C.J.32
Meehan, T.F.33
Lassmann, T.34
Itoh, M.35
Kawaji, H.36
Kondo, N.37
Kawai, J.38
Lennartsson, A.39
Daub, C.O.40
Heutink, P.41
Hume, D.A.42
Jensen, T.H.43
Suzuki, H.44
Hayashizaki, Y.45
Muller, F.46
Consortium, F.47
Forrest, A.R.48
Carninci, P.49
Rehli, M.50
Sandelin, A.51
more..
-
187
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
3088773 1:STN:528:DC%2BC3MXjvVOitL0%3D 21441907
-
Ernst J, Kheradpour P, Mikkelsen TS, Shoresh N, Ward LD, Epstein CB, Zhang X, Wang L, Issner R, Coyne M, Ku M, Durham T, Kellis M, Bernstein BE (2011) Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 473(7345):43-49. doi: 10.1038/nature09906
-
(2011)
Nature
, vol.473
, Issue.7345
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
Ku, M.11
Durham, T.12
Kellis, M.13
Bernstein, B.E.14
-
188
-
-
84873086126
-
Chromatin marks identify critical cell types for fine mapping complex trait variants
-
1:STN:528:DC%2BC38XhvVOqs7zP
-
Trynka G, Sandor C, Han B, Xu H, Stranger BE, Liu XS, Raychaudhuri S (2013) Chromatin marks identify critical cell types for fine mapping complex trait variants. Nat Genet 45(2):124-130. doi: 10.1038/ng.2504
-
(2013)
Nat Genet
, vol.45
, Issue.2
, pp. 124-130
-
-
Trynka, G.1
Sandor, C.2
Han, B.3
Xu, H.4
Stranger, B.E.5
Liu, X.S.6
Raychaudhuri, S.7
-
189
-
-
84860841594
-
Epigenomic enhancer profiling defines a signature of colon cancer
-
3711120 1:STN:528:DC%2BC38XmsFymu78%3D 22499810
-
Akhtar-Zaidi B, Cowper-Sal-lari R, Corradin O, Saiakhova A, Bartels CF, Balasubramanian D, Myeroff L, Lutterbaugh J, Jarrar A, Kalady MF, Willis J, Moore JH, Tesar PJ, Laframboise T, Markowitz S, Lupien M, Scacheri PC (2012) Epigenomic enhancer profiling defines a signature of colon cancer. Science 336(6082):736-739. doi: 10.1126/science.1217277
-
(2012)
Science
, vol.336
, Issue.6082
, pp. 736-739
-
-
Akhtar-Zaidi, B.1
Cowper-Sal-Lari, R.2
Corradin, O.3
Saiakhova, A.4
Bartels, C.F.5
Balasubramanian, D.6
Myeroff, L.7
Lutterbaugh, J.8
Jarrar, A.9
Kalady, M.F.10
Willis, J.11
Moore, J.H.12
Tesar, P.J.13
Laframboise, T.14
Markowitz, S.15
Lupien, M.16
Scacheri, P.C.17
-
190
-
-
84891697734
-
Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits
-
3875850 1:STN:528:DC%2BC2cXosVCjtw%3D%3D 24196873
-
Corradin O, Saiakhova A, Akhtar-Zaidi B, Myeroff L, Willis J, Cowper-Sal-lari R, Lupien M, Markowitz S, Scacheri PC (2014) Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits. Genome Res 24(1):1-13. doi: 10.1101/gr.164079.113
-
(2014)
Genome Res
, vol.24
, Issue.1
, pp. 1-13
-
-
Corradin, O.1
Saiakhova, A.2
Akhtar-Zaidi, B.3
Myeroff, L.4
Willis, J.5
Cowper-Sal-Lari, R.6
Lupien, M.7
Markowitz, S.8
Scacheri, P.C.9
-
191
-
-
84875200257
-
Long noncoding RNAs: Cellular address codes in development and disease
-
3651923 1:STN:528:DC%2BC3sXktFWqtbY%3D 23498938
-
Batista PJ, Chang HY (2013) Long noncoding RNAs: cellular address codes in development and disease. Cell 152(6): 12981307. doi:10.1016/j.cell.2013.02.012
-
(2013)
Cell
, vol.152
, Issue.6
, pp. 1298-1307
-
-
Batista, P.J.1
Chang, H.Y.2
|