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Volumn 72, Issue 12, 2015, Pages 2361-2375

Eukaryotic enhancers: Common features, regulation, and participation in diseases

Author keywords

Chromatin loop; Epigenetics; Gene regulation; Regulatory elements; Transcription

Indexed keywords

CYCLIN C; CYCLIN DEPENDENT KINASE 8; E1A PROTEIN; HISTONE; KRUPPEL LIKE FACTOR 4; LONG UNTRANSLATED RNA; OCTAMER TRANSCRIPTION FACTOR 4; RNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR NANOG; TRANSCRIPTION FACTOR SOX2; CHROMATIN;

EID: 84929702523     PISSN: 1420682X     EISSN: 14209071     Source Type: Journal    
DOI: 10.1007/s00018-015-1871-9     Document Type: Review
Times cited : (33)

References (191)
  • 1
    • 84861529303 scopus 로고    scopus 로고
    • Enhancers as information integration hubs in development: Lessons from genomics
    • 1:STN:528:DC%2BC38Xlt1Kms7k%3D
    • Buecker C, Wysocka J (2012) Enhancers as information integration hubs in development: lessons from genomics. Trends Genet 28(6):276-284. doi: 10.1016/j.tig.2012.02.008
    • (2012) Trends Genet , vol.28 , Issue.6 , pp. 276-284
    • Buecker, C.1    Wysocka, J.2
  • 2
    • 79551655285 scopus 로고    scopus 로고
    • Functional and mechanistic diversity of distal transcription enhancers
    • 3742076 1:STN:528:DC%2BC3MXhsFOhtL0%3D 21295696
    • Bulger M, Groudine M (2011) Functional and mechanistic diversity of distal transcription enhancers. Cell 144(3):327-339. doi: 10.1016/j.cell.2011.01.024
    • (2011) Cell , vol.144 , Issue.3 , pp. 327-339
    • Bulger, M.1    Groudine, M.2
  • 3
    • 0019811465 scopus 로고
    • Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences
    • 1:STN:528:DyaL38XotVOhsQ%3D%3D6277502
    • Banerji J, Rusconi S, Schaffner W (1981) Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences. Cell 27:299-308
    • (1981) Cell , vol.27 , pp. 299-308
    • Banerji, J.1    Rusconi, S.2    Schaffner, W.3
  • 4
    • 0019420927 scopus 로고
    • In vivo sequence requirements of the SV40 early promotor region
    • 1:STN:528:DyaL3MXktlyqsLo%3D6259538
    • Benoist C, Chambon P (1981) In vivo sequence requirements of the SV40 early promotor region. Nature 290(5804):304-310
    • (1981) Nature , vol.290 , Issue.5804 , pp. 304-310
    • Benoist, C.1    Chambon, P.2
  • 5
    • 84857781464 scopus 로고    scopus 로고
    • Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization
    • 3292289 1:STN:528:DC%2BC38Xjt1Wjur4%3D 22270183
    • Chepelev I, Wei G, Wangsa D, Tang Q, Zhao K (2012) Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization. Cell Res 22(3):490-503. doi: 10.1038/cr.2012.15
    • (2012) Cell Res , vol.22 , Issue.3 , pp. 490-503
    • Chepelev, I.1    Wei, G.2    Wangsa, D.3    Tang, Q.4    Zhao, K.5
  • 7
    • 84860469898 scopus 로고    scopus 로고
    • Transcriptional enhancers in protein-coding exons of vertebrate developmental genes
    • 3342275 1:STN:528:DC%2BC38Xntlens7k%3D 22567096
    • Ritter DI, Dong Z, Guo S, Chuang JH (2012) Transcriptional enhancers in protein-coding exons of vertebrate developmental genes. PLoS ONE 7(5):e35202. doi: 10.1371/journal.pone.0035202
    • (2012) PLoS ONE , vol.7 , Issue.5 , pp. 35202
    • Ritter, D.I.1    Dong, Z.2    Guo, S.3    Chuang, J.H.4
  • 8
    • 84861057518 scopus 로고    scopus 로고
    • Chromatin loop formation in the beta-globin locus and its role in globin gene transcription
    • 3887778
    • Kim A, Dean A (2012) Chromatin loop formation in the beta-globin locus and its role in globin gene transcription. Mol Cells 34(1):1-5. doi: 10.1007/s10059-012-0048-8
    • (2012) Mol Cells , vol.34 , Issue.1 , pp. 1-5
    • Kim, A.1    Dean, A.2
  • 9
    • 84895887720 scopus 로고    scopus 로고
    • Enhancer biology and enhanceropathies
    • 1:STN:528:DC%2BC2cXjsFGksb8%3D
    • Smith E, Shilatifard A (2014) Enhancer biology and enhanceropathies. Nat Struct Mol Biol 21(3):210-219. doi: 10.1038/nsmb.2784
    • (2014) Nat Struct Mol Biol , vol.21 , Issue.3 , pp. 210-219
    • Smith, E.1    Shilatifard, A.2
  • 10
    • 84865249952 scopus 로고    scopus 로고
    • Transcription factors: From enhancer binding to developmental control
    • 1:STN:528:DC%2BC38XhtFCrtrbM
    • Spitz F, Furlong EE (2012) Transcription factors: from enhancer binding to developmental control. Nat Rev Genet 13(9):613-626. doi: 10.1038/nrg3207
    • (2012) Nat Rev Genet , vol.13 , Issue.9 , pp. 613-626
    • Spitz, F.1    Furlong, E.E.2
  • 12
    • 0018359588 scopus 로고
    • The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity
    • 1:STN:528:DyaE1MXktVars74%3D455450
    • Wu C, Wong YC, Elgin SC (1979) The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity. Cell 16(4):807-814
    • (1979) Cell , vol.16 , Issue.4 , pp. 807-814
    • Wu, C.1    Wong, Y.C.2    Elgin, S.C.3
  • 14
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • 1:STN:528:DC%2BD2sXmtFKjsro%3D
    • Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K (2007) High-resolution profiling of histone methylations in the human genome. Cell 129(4):823-837. doi: 10.1016/j.cell.2007.05.009
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 15
    • 68149150830 scopus 로고    scopus 로고
    • H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
    • 3125718 1:STN:528:DC%2BD1MXovFymu7o%3D 19633671
    • Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G (2009) H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41(8):941-945. doi: 10.1038/ng.409
    • (2009) Nat Genet , vol.41 , Issue.8 , pp. 941-945
    • Jin, C.1    Zang, C.2    Wei, G.3    Cui, K.4    Peng, W.5    Zhao, K.6    Felsenfeld, G.7
  • 17
    • 34250745886 scopus 로고    scopus 로고
    • Nucleosome stability mediated by histone variants H3.3 and H2A.Z
    • 1891429 1:STN:528:DC%2BD2sXntlCrurw%3D 17575053
    • Jin C, Felsenfeld G (2007) Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 21(12):1519-1529. doi: 10.1101/gad.1547707
    • (2007) Genes Dev , vol.21 , Issue.12 , pp. 1519-1529
    • Jin, C.1    Felsenfeld, G.2
  • 18
    • 0035477093 scopus 로고    scopus 로고
    • Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs
    • 312797 1:STN:528:DC%2BD3MXnsV2gur4%3D 11581157
    • Butler JE, Kadonaga JT (2001) Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. Genes Dev 15(19):2515-2519. doi: 10.1101/gad.924301
    • (2001) Genes Dev , vol.15 , Issue.19 , pp. 2515-2519
    • Butler, J.E.1    Kadonaga, J.T.2
  • 19
    • 84927641804 scopus 로고    scopus 로고
    • In search of the determinants of enhancer-promoter interaction specificity
    • 25160912
    • van Arensbergen J, van Steensel B, Bussemaker HJ (2014) In search of the determinants of enhancer-promoter interaction specificity. Trends Cell Biol. doi: 10.1016/j.tcb.2014.07.004
    • (2014) Trends Cell Biol
    • Van Arensbergen, J.1    Van Steensel, B.2    Bussemaker, H.J.3
  • 20
    • 84925543087 scopus 로고    scopus 로고
    • Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation
    • 25517091
    • Zabidi MA, Arnold CD, Schernhuber K, Pagani M, Rath M, Frank O, Stark A (2014) Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation. Nature. doi: 10.1038/nature13994
    • (2014) Nature
    • Zabidi, M.A.1    Arnold, C.D.2    Schernhuber, K.3    Pagani, M.4    Rath, M.5    Frank, O.6    Stark, A.7
  • 21
    • 84892445699 scopus 로고    scopus 로고
    • Making connections: Insulators organize eukaryotic chromosomes into independent cis-regulatory networks
    • 4362772 1:STN:528:DC%2BC2cXptVWgtw%3D%3D 24277632
    • Chetverina D, Aoki T, Erokhin M, Georgiev P, Schedl P (2014) Making connections: insulators organize eukaryotic chromosomes into independent cis-regulatory networks. BioEssays 36(2):163-172. doi: 10.1002/bies.201300125
    • (2014) BioEssays , vol.36 , Issue.2 , pp. 163-172
    • Chetverina, D.1    Aoki, T.2    Erokhin, M.3    Georgiev, P.4    Schedl, P.5
  • 22
    • 67650601695 scopus 로고    scopus 로고
    • Paused Pol II captures enhancer activity and acts as a potent insulator
    • 3959990 1:STN:528:DC%2BD1MXptVahsr4%3D 19605681
    • Core LJ, Lis JT (2009) Paused Pol II captures enhancer activity and acts as a potent insulator. Genes Dev 23(14):1606-1612. doi: 10.1101/gad.1827709
    • (2009) Genes Dev , vol.23 , Issue.14 , pp. 1606-1612
    • Core, L.J.1    Lis, J.T.2
  • 23
    • 84902212007 scopus 로고    scopus 로고
    • The 3D genome in transcriptional regulation and pluripotency
    • 1:STN:528:DC%2BC2cXpvFSktbw%3D
    • Gorkin DU, Leung D, Ren B (2014) The 3D genome in transcriptional regulation and pluripotency. Cell Stem Cell 14(6):762-775. doi: 10.1016/j.stem.2014.05.017
    • (2014) Cell Stem Cell , vol.14 , Issue.6 , pp. 762-775
    • Gorkin, D.U.1    Leung, D.2    Ren, B.3
  • 24
    • 84891017304 scopus 로고    scopus 로고
    • Chromatin insulators and long-distance interactions in Drosophila
    • 1:STN:528:DC%2BC3sXhslyqu7bN
    • Kyrchanova O, Georgiev P (2014) Chromatin insulators and long-distance interactions in Drosophila. FEBS Lett 588(1):8-14. doi: 10.1016/j.febslet.2013.10.039
    • (2014) FEBS Lett , vol.588 , Issue.1 , pp. 8-14
    • Kyrchanova, O.1    Georgiev, P.2
  • 25
    • 84925636391 scopus 로고    scopus 로고
    • Chromatin-driven behavior of topologically associating domains
    • 25280896
    • Ciabrelli F, Cavalli G (2014) Chromatin-driven behavior of topologically associating domains. J Mol Biol. doi: 10.1016/j.jmb.2014.09.013
    • (2014) J Mol Biol
    • Ciabrelli, F.1    Cavalli, G.2
  • 26
    • 84901834984 scopus 로고    scopus 로고
    • The architecture of gene expression: Integrating dispersed cis-regulatory modules into coherent regulatory domains
    • 1:STN:528:DC%2BC2cXht1Oit73F
    • Schwarzer W, Spitz F (2014) The architecture of gene expression: integrating dispersed cis-regulatory modules into coherent regulatory domains. Curr Opin Genet Dev 27:74-82. doi: 10.1016/j.gde.2014.03.014
    • (2014) Curr Opin Genet Dev , vol.27 , pp. 74-82
    • Schwarzer, W.1    Spitz, F.2
  • 27
    • 84899450857 scopus 로고    scopus 로고
    • Transcriptional enhancers: From properties to genome-wide predictions
    • 1:STN:528:DC%2BC2cXjvFyqt74%3D
    • Shlyueva D, Stampfel G, Stark A (2014) Transcriptional enhancers: from properties to genome-wide predictions. Nat Rev Genet 15(4):272-286. doi: 10.1038/nrg3682
    • (2014) Nat Rev Genet , vol.15 , Issue.4 , pp. 272-286
    • Shlyueva, D.1    Stampfel, G.2    Stark, A.3
  • 28
    • 84879783381 scopus 로고    scopus 로고
    • Computational identification of active enhancers in model organisms
    • 1:STN:528:DC%2BC3sXhs1ShtLnL
    • Wang C, Zhang MQ, Zhang Z (2013) Computational identification of active enhancers in model organisms. Genomics Proteomics Bioinf 11(3):142-150. doi: 10.1016/j.gpb.2013.04.002
    • (2013) Genomics Proteomics Bioinf , vol.11 , Issue.3 , pp. 142-150
    • Wang, C.1    Zhang, M.Q.2    Zhang, Z.3
  • 29
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Consortium EP (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489(7414):57-74. doi: 10.1038/nature11247
    • (2012) Nature , vol.489 , Issue.7414
  • 30
    • 71749120382 scopus 로고    scopus 로고
    • Finding distal regulatory elements in the human genome
    • 3321269 1:STN:528:DC%2BD1MXhsV2gsrnL 19854636
    • Heintzman ND, Ren B (2009) Finding distal regulatory elements in the human genome. Curr Opin Genet Dev 19(6):541-549. doi: 10.1016/j.gde.2009.09.006
    • (2009) Curr Opin Genet Dev , vol.19 , Issue.6 , pp. 541-549
    • Heintzman, N.D.1    Ren, B.2
  • 31
    • 84896919030 scopus 로고    scopus 로고
    • Chromatin contributions to the regulation of innate immunity
    • 1:STN:528:DC%2BC2cXovVemt7Y%3D
    • Smale ST, Tarakhovsky A, Natoli G (2014) Chromatin contributions to the regulation of innate immunity. Annu Rev Immunol 32:489-511. doi: 10.1146/annurev-immunol-031210-101303
    • (2014) Annu Rev Immunol , vol.32 , pp. 489-511
    • Smale, S.T.1    Tarakhovsky, A.2    Natoli, G.3
  • 32
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: Establishing competence for gene expression
    • 3219227 1:STN:528:DC%2BC3MXhsFaktLzN 22056668
    • Zaret KS, Carroll JS (2011) Pioneer transcription factors: establishing competence for gene expression. Genes Dev 25(21):2227-2241. doi: 10.1101/gad.176826.111
    • (2011) Genes Dev , vol.25 , Issue.21 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2
  • 33
    • 84876836223 scopus 로고    scopus 로고
    • Modification of enhancer chromatin: What, how, and why?
    • 1:STN:528:DC%2BC3sXktVOqu7g%3D
    • Calo E, Wysocka J (2013) Modification of enhancer chromatin: what, how, and why? Mol Cell 49(5):825-837. doi: 10.1016/j.molcel.2013.01.038
    • (2013) Mol Cell , vol.49 , Issue.5 , pp. 825-837
    • Calo, E.1    Wysocka, J.2
  • 35
    • 34547635650 scopus 로고    scopus 로고
    • Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells
    • 1941477 1:STN:528:DC%2BD2sXos1ehtrk%3D 17640912
    • Xu J, Pope SD, Jazirehi AR, Attema JL, Papathanasiou P, Watts JA, Zaret KS, Weissman IL, Smale ST (2007) Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells. Proc Natl Acad Sci USA 104(30):12377-12382. doi: 10.1073/pnas.0704579104
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.30 , pp. 12377-12382
    • Xu, J.1    Pope, S.D.2    Jazirehi, A.R.3    Attema, J.L.4    Papathanasiou, P.5    Watts, J.A.6    Zaret, K.S.7    Weissman, I.L.8    Smale, S.T.9
  • 36
    • 72849110608 scopus 로고    scopus 로고
    • Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells
    • 2800090 1:STN:528:DC%2BC3cXntFKg 20008934
    • Xu J, Watts JA, Pope SD, Gadue P, Kamps M, Plath K, Zaret KS, Smale ST (2009) Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells. Genes Dev 23(24):2824-2838. doi: 10.1101/gad.1861209
    • (2009) Genes Dev , vol.23 , Issue.24 , pp. 2824-2838
    • Xu, J.1    Watts, J.A.2    Pope, S.D.3    Gadue, P.4    Kamps, M.5    Plath, K.6    Zaret, K.S.7    Smale, S.T.8
  • 38
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • 2898526 1:STN:528:DC%2BC3cXns1SlsLc%3D 20513432
    • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38(4):576-589. doi: 10.1016/j.molcel.2010.05.004
    • (2010) Mol Cell , vol.38 , Issue.4 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 41
    • 84894084126 scopus 로고    scopus 로고
    • The Mediator complex: A master coordinator of transcription and cell lineage development
    • 1:STN:528:DC%2BC2cXmtVGktrw%3D
    • Yin JW, Wang G (2014) The Mediator complex: a master coordinator of transcription and cell lineage development. Development 141(5):977-987. doi: 10.1242/dev.098392
    • (2014) Development , vol.141 , Issue.5 , pp. 977-987
    • Yin, J.W.1    Wang, G.2
  • 43
    • 84874368349 scopus 로고    scopus 로고
    • Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
    • 4109059 1:STN:528:DC%2BC3sXjtFWjur8%3D 23417068
    • Lai F, Orom UA, Cesaroni M, Beringer M, Taatjes DJ, Blobel GA, Shiekhattar R (2013) Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 494(7438):497-501. doi: 10.1038/nature11884
    • (2013) Nature , vol.494 , Issue.7438 , pp. 497-501
    • Lai, F.1    Orom, U.A.2    Cesaroni, M.3    Beringer, M.4    Taatjes, D.J.5    Blobel, G.A.6    Shiekhattar, R.7
  • 44
    • 24044531563 scopus 로고    scopus 로고
    • Thyroid hormone-induced juxtaposition of regulatory elements/factors and chromatin remodeling of Crabp1 dependent on MED1/TRAP220
    • 1:STN:528:DC%2BD2MXhtVSkurrE
    • Park SW, Li G, Lin YP, Barrero MJ, Ge K, Roeder RG, Wei LN (2005) Thyroid hormone-induced juxtaposition of regulatory elements/factors and chromatin remodeling of Crabp1 dependent on MED1/TRAP220. Mol Cell 19(5):643-653. doi: 10.1016/j.molcel.2005.08.008
    • (2005) Mol Cell , vol.19 , Issue.5 , pp. 643-653
    • Park, S.W.1    Li, G.2    Lin, Y.P.3    Barrero, M.J.4    Ge, K.5    Roeder, R.G.6    Wei, L.N.7
  • 45
    • 84876216563 scopus 로고    scopus 로고
    • Master transcription factors and mediator establish super-enhancers at key cell identity genes
    • 3653129 1:STN:528:DC%2BC3sXlvVCrtbg%3D 23582322
    • Whyte WA, Orlando DA, Hnisz D, Abraham BJ, Lin CY, Kagey MH, Rahl PB, Lee TI, Young RA (2013) Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153(2):307-319. doi: 10.1016/j.cell.2013.03.035
    • (2013) Cell , vol.153 , Issue.2 , pp. 307-319
    • Whyte, W.A.1    Orlando, D.A.2    Hnisz, D.3    Abraham, B.J.4    Lin, C.Y.5    Kagey, M.H.6    Rahl, P.B.7    Lee, T.I.8    Young, R.A.9
  • 46
    • 84880273878 scopus 로고    scopus 로고
    • Mechanisms of Mediator complex action in transcriptional activation
    • 1:STN:528:DC%2BC3sXhtVyis7zL
    • Ansari SA, Morse RH (2013) Mechanisms of Mediator complex action in transcriptional activation. Cell Mol Life Sci 70(15):2743-2756. doi: 10.1007/s00018-013-1265-9
    • (2013) Cell Mol Life Sci , vol.70 , Issue.15 , pp. 2743-2756
    • Ansari, S.A.1    Morse, R.H.2
  • 47
    • 77958111633 scopus 로고    scopus 로고
    • The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
    • 3217725 1:STN:528:DC%2BC3cXhtlShsLrP 20940737
    • Malik S, Roeder RG (2010) The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation. Nat Rev Genet 11(11):761-772. doi: 10.1038/nrg2901
    • (2010) Nat Rev Genet , vol.11 , Issue.11 , pp. 761-772
    • Malik, S.1    Roeder, R.G.2
  • 48
    • 84888588009 scopus 로고    scopus 로고
    • The Mediator complex and transcription regulation
    • 3852498 1:STN:528:DC%2BC3sXhvVShsbrE 24088064
    • Poss ZC, Ebmeier CC, Taatjes DJ (2013) The Mediator complex and transcription regulation. Crit Rev Biochem Mol Biol 48(6):575-608. doi: 10.3109/10409238.2013.840259
    • (2013) Crit Rev Biochem Mol Biol , vol.48 , Issue.6 , pp. 575-608
    • Poss, Z.C.1    Ebmeier, C.C.2    Taatjes, D.J.3
  • 49
    • 27544466462 scopus 로고    scopus 로고
    • The role of enhancers as centres for general transcription factor recruitment
    • 1:STN:528:DC%2BD2MXhtFKhsLvP
    • Szutorisz H, Dillon N, Tora L (2005) The role of enhancers as centres for general transcription factor recruitment. Trends Biochem Sci 30(11):593-599. doi: 10.1016/j.tibs.2005.08.006
    • (2005) Trends Biochem Sci , vol.30 , Issue.11 , pp. 593-599
    • Szutorisz, H.1    Dillon, N.2    Tora, L.3
  • 51
    • 77449109789 scopus 로고    scopus 로고
    • Target gene context influences the transcriptional requirement for the KAT3 family of CBP and p300 histone acetyltransferases
    • 2829352 1:STN:528:DC%2BC3cXot1Cjtbo%3D 20110770
    • Bedford DC, Kasper LH, Fukuyama T, Brindle PK (2010) Target gene context influences the transcriptional requirement for the KAT3 family of CBP and p300 histone acetyltransferases. Epigenetics 5(1):9-15
    • (2010) Epigenetics , vol.5 , Issue.1 , pp. 9-15
    • Bedford, D.C.1    Kasper, L.H.2    Fukuyama, T.3    Brindle, P.K.4
  • 52
    • 84872198371 scopus 로고    scopus 로고
    • Genomic occupancy of the transcriptional co-activators p300 and CBP
    • 3644037
    • Holmqvist PH, Mannervik M (2013) Genomic occupancy of the transcriptional co-activators p300 and CBP. Transcription 4(1):18-23. doi: 10.4161/trns.22601
    • (2013) Transcription , vol.4 , Issue.1 , pp. 18-23
    • Holmqvist, P.H.1    Mannervik, M.2
  • 53
    • 57049120143 scopus 로고    scopus 로고
    • Structure and chemistry of the p300/CBP and Rtt109 histone acetyltransferases: Implications for histone acetyltransferase evolution and function
    • 2643075 1:STN:528:DC%2BD1cXhsVOisr%2FI 18845255
    • Wang L, Tang Y, Cole PA, Marmorstein R (2008) Structure and chemistry of the p300/CBP and Rtt109 histone acetyltransferases: implications for histone acetyltransferase evolution and function. Curr Opin Struct Biol 18(6):741-747. doi: 10.1016/j.sbi.2008.09.004
    • (2008) Curr Opin Struct Biol , vol.18 , Issue.6 , pp. 741-747
    • Wang, L.1    Tang, Y.2    Cole, P.A.3    Marmorstein, R.4
  • 55
    • 69449102464 scopus 로고    scopus 로고
    • Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
    • 2750862 1:STN:528:DC%2BD1MXhsVCjs7zK 19698979
    • Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K (2009) Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 138(5):1019-1031. doi: 10.1016/j.cell.2009.06.049
    • (2009) Cell , vol.138 , Issue.5 , pp. 1019-1031
    • Wang, Z.1    Zang, C.2    Cui, K.3    Schones, D.E.4    Barski, A.5    Peng, W.6    Zhao, K.7
  • 60
    • 84864069906 scopus 로고    scopus 로고
    • Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos
    • 3380834 1:STN:528:DC%2BC38XpsVWkt7c%3D 22737084
    • Holmqvist PH, Boija A, Philip P, Crona F, Stenberg P, Mannervik M (2012) Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos. PLoS Genet 8(6):e1002769. doi: 10.1371/journal.pgen.1002769
    • (2012) PLoS Genet , vol.8 , Issue.6 , pp. 1002769
    • Holmqvist, P.H.1    Boija, A.2    Philip, P.3    Crona, F.4    Stenberg, P.5    Mannervik, M.6
  • 63
    • 81955160676 scopus 로고    scopus 로고
    • Distant cis-regulatory elements in human skeletal muscle differentiation
    • 3229301 1:STN:528:DC%2BC3MXhsFWqsL3O 21907276
    • McCord RP, Zhou VW, Yuh T, Bulyk ML (2011) Distant cis-regulatory elements in human skeletal muscle differentiation. Genomics 98(6):401-411. doi: 10.1016/j.ygeno.2011.08.003
    • (2011) Genomics , vol.98 , Issue.6 , pp. 401-411
    • McCord, R.P.1    Zhou, V.W.2    Yuh, T.3    Bulyk, M.L.4
  • 64
    • 78751611793 scopus 로고    scopus 로고
    • Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation
    • 3025463 1:STN:528:DC%2BC3cXhsFSrsr3E 21131905
    • Jin Q, Yu LR, Wang L, Zhang Z, Kasper LH, Lee JE, Wang C, Brindle PK, Dent SY, Ge K (2011) Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation. EMBO J 30(2):249-262. doi: 10.1038/emboj.2010.318
    • (2011) EMBO J , vol.30 , Issue.2 , pp. 249-262
    • Jin, Q.1    Yu, L.R.2    Wang, L.3    Zhang, Z.4    Kasper, L.H.5    Lee, J.E.6    Wang, C.7    Brindle, P.K.8    Dent, S.Y.9    Ge, K.10
  • 69
    • 0034282480 scopus 로고    scopus 로고
    • Acetylation of GATA-3 affects T-cell survival and homing to secondary lymphoid organs
    • 302063 1:STN:528:DC%2BD3cXmslGku7c%3D 10970860
    • Yamagata T, Mitani K, Oda H, Suzuki T, Honda H, Asai T, Maki K, Nakamoto T, Hirai H (2000) Acetylation of GATA-3 affects T-cell survival and homing to secondary lymphoid organs. EMBO J 19(17):4676-4687. doi: 10.1093/emboj/19.17.4676
    • (2000) EMBO J , vol.19 , Issue.17 , pp. 4676-4687
    • Yamagata, T.1    Mitani, K.2    Oda, H.3    Suzuki, T.4    Honda, H.5    Asai, T.6    Maki, K.7    Nakamoto, T.8    Hirai, H.9
  • 70
    • 26844546178 scopus 로고    scopus 로고
    • Protein acetylation regulates both PU.1 transactivation and Ig kappa 3′ enhancer activity
    • 1:STN:528:DC%2BD2MXhtVylsbnL16210620
    • Bai Y, Srinivasan L, Perkins L, Atchison ML (2005) Protein acetylation regulates both PU.1 transactivation and Ig kappa 3′ enhancer activity. J Immunol 175(8):5160-5169
    • (2005) J Immunol , vol.175 , Issue.8 , pp. 5160-5169
    • Bai, Y.1    Srinivasan, L.2    Perkins, L.3    Atchison, M.L.4
  • 71
    • 80555156095 scopus 로고    scopus 로고
    • SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers
    • 1:STN:528:DC%2BC3MXhsVaqtLvL
    • Krebs AR, Karmodiya K, Lindahl-Allen M, Struhl K, Tora L (2011) SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers. Mol Cell 44(3):410-423. doi: 10.1016/j.molcel.2011.08.037
    • (2011) Mol Cell , vol.44 , Issue.3 , pp. 410-423
    • Krebs, A.R.1    Karmodiya, K.2    Lindahl-Allen, M.3    Struhl, K.4    Tora, L.5
  • 72
    • 84876838711 scopus 로고    scopus 로고
    • The hierarchy of the 3D genome
    • 3741673 1:STN:528:DC%2BC3sXktVOqsLc%3D 23473598
    • Gibcus JH, Dekker J (2013) The hierarchy of the 3D genome. Mol Cell 49(5):773-782. doi: 10.1016/j.molcel.2013.02.011
    • (2013) Mol Cell , vol.49 , Issue.5 , pp. 773-782
    • Gibcus, J.H.1    Dekker, J.2
  • 73
    • 84879232679 scopus 로고    scopus 로고
    • Genome organization and long-range regulation of gene expression by enhancers
    • 4180870 1:STN:528:DC%2BC3sXjsFertLg%3D 23465541
    • Smallwood A, Ren B (2013) Genome organization and long-range regulation of gene expression by enhancers. Curr Opin Cell Biol 25(3):387-394. doi: 10.1016/j.ceb.2013.02.005
    • (2013) Curr Opin Cell Biol , vol.25 , Issue.3 , pp. 387-394
    • Smallwood, A.1    Ren, B.2
  • 74
    • 0036923833 scopus 로고    scopus 로고
    • Looping and interaction between hypersensitive sites in the active beta-globin locus
    • 1:STN:528:DC%2BD3sXjslOitQ%3D%3D12504019
    • Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W (2002) Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol Cell 10(6):1453-1465
    • (2002) Mol Cell , vol.10 , Issue.6 , pp. 1453-1465
    • Tolhuis, B.1    Palstra, R.J.2    Splinter, E.3    Grosveld, F.4    De Laat, W.5
  • 75
    • 84855297335 scopus 로고    scopus 로고
    • A decade of 3C technologies: Insights into nuclear organization
    • 3258961
    • de Wit E, de Laat W (2012) A decade of 3C technologies: insights into nuclear organization. Genes Dev 26(1):11-24. doi: 10.1101/gad.179804.111
    • (2012) Genes Dev , vol.26 , Issue.1 , pp. 11-24
    • De Wit, E.1    De Laat, W.2
  • 76
    • 84905593782 scopus 로고    scopus 로고
    • Enhancer loops appear stable during development and are associated with paused polymerase
    • 1:STN:528:DC%2BC2cXht12ms77L
    • Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE (2014) Enhancer loops appear stable during development and are associated with paused polymerase. Nature 512(7512):96-100. doi: 10.1038/nature13417
    • (2014) Nature , vol.512 , Issue.7512 , pp. 96-100
    • Ghavi-Helm, Y.1    Klein, F.A.2    Pakozdi, T.3    Ciglar, L.4    Noordermeer, D.5    Huber, W.6    Furlong, E.E.7
  • 78
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • 3555147 1:STN:528:DC%2BC38XhtlGnsLnM 22955621
    • Sanyal A, Lajoie BR, Jain G, Dekker J (2012) The long-range interaction landscape of gene promoters. Nature 489(7414):109-113. doi: 10.1038/nature11279
    • (2012) Nature , vol.489 , Issue.7414 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 82
    • 84887620842 scopus 로고    scopus 로고
    • A high-resolution map of the three-dimensional chromatin interactome in human cells
    • 1:STN:528:DC%2BC3sXhslSnsLfK
    • Jin F, Li Y, Dixon JR, Selvaraj S, Ye Z, Lee AY, Yen CA, Schmitt AD, Espinoza CA, Ren B (2013) A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature 503(7475):290-294. doi: 10.1038/nature12644
    • (2013) Nature , vol.503 , Issue.7475 , pp. 290-294
    • Jin, F.1    Li, Y.2    Dixon, J.R.3    Selvaraj, S.4    Ye, Z.5    Lee, A.Y.6    Yen, C.A.7    Schmitt, A.D.8    Espinoza, C.A.9    Ren, B.10
  • 83
    • 84887835943 scopus 로고    scopus 로고
    • Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency
    • 1:STN:528:DC%2BC3sXptFKltL0%3D
    • Wei Z, Gao F, Kim S, Yang H, Lyu J, An W, Wang K, Lu W (2013) Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency. Cell Stem Cell 13(1):36-47. doi: 10.1016/j.stem.2013.05.010
    • (2013) Cell Stem Cell , vol.13 , Issue.1 , pp. 36-47
    • Wei, Z.1    Gao, F.2    Kim, S.3    Yang, H.4    Lyu, J.5    An, W.6    Wang, K.7    Lu, W.8
  • 85
    • 5444255213 scopus 로고    scopus 로고
    • The active spatial organization of the beta-globin locus requires the transcription factor EKLF
    • 529536 1:STN:528:DC%2BD2cXovVynsr8%3D 15489291
    • Drissen R, Palstra RJ, Gillemans N, Splinter E, Grosveld F, Philipsen S, de Laat W (2004) The active spatial organization of the beta-globin locus requires the transcription factor EKLF. Genes Dev 18(20):2485-2490. doi: 10.1101/gad.317004
    • (2004) Genes Dev , vol.18 , Issue.20 , pp. 2485-2490
    • Drissen, R.1    Palstra, R.J.2    Gillemans, N.3    Splinter, E.4    Grosveld, F.5    Philipsen, S.6    De Laat, W.7
  • 86
    • 13244272059 scopus 로고    scopus 로고
    • Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1
    • 1:STN:528:DC%2BD2MXhs1Oit7g%3D
    • Vakoc CR, Letting DL, Gheldof N, Sawado T, Bender MA, Groudine M, Weiss MJ, Dekker J, Blobel GA (2005) Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1. Mol Cell 17(3):453-462. doi: 10.1016/j.molcel.2004.12.028
    • (2005) Mol Cell , vol.17 , Issue.3 , pp. 453-462
    • Vakoc, C.R.1    Letting, D.L.2    Gheldof, N.3    Sawado, T.4    Bender, M.A.5    Groudine, M.6    Weiss, M.J.7    Dekker, J.8    Blobel, G.A.9
  • 87
    • 40349084105 scopus 로고    scopus 로고
    • Oct4 dependence of chromatin structure within the extended Nanog locus in ES cells
    • 2259027 1:STN:528:DC%2BD1cXjsVKnt7g%3D 18283123
    • Levasseur DN, Wang J, Dorschner MO, Stamatoyannopoulos JA, Orkin SH (2008) Oct4 dependence of chromatin structure within the extended Nanog locus in ES cells. Genes Dev 22(5):575-580. doi: 10.1101/gad.1606308
    • (2008) Genes Dev , vol.22 , Issue.5 , pp. 575-580
    • Levasseur, D.N.1    Wang, J.2    Dorschner, M.O.3    Stamatoyannopoulos, J.A.4    Orkin, S.H.5
  • 88
    • 79953162010 scopus 로고    scopus 로고
    • Cohesin: Genomic insights into controlling gene transcription and development
    • 3070859 1:STN:528:DC%2BC3MXkt1GisbY%3D 21324671
    • Dorsett D (2011) Cohesin: genomic insights into controlling gene transcription and development. Curr Opin Genet Dev 21(2):199-206. doi: 10.1016/j.gde.2011.01.018
    • (2011) Curr Opin Genet Dev , vol.21 , Issue.2 , pp. 199-206
    • Dorsett, D.1
  • 89
    • 84883212203 scopus 로고    scopus 로고
    • Cohesin in development and disease
    • 1:STN:528:DC%2BC3sXhs1CktL7I
    • Remeseiro S, Cuadrado A, Losada A (2013) Cohesin in development and disease. Development 140(18):3715-3718. doi: 10.1242/dev.090605
    • (2013) Development , vol.140 , Issue.18 , pp. 3715-3718
    • Remeseiro, S.1    Cuadrado, A.2    Losada, A.3
  • 90
    • 77954922964 scopus 로고    scopus 로고
    • Activator-Mediator binding regulates Mediator-cofactor interactions
    • 2895140 1:STN:528:DC%2BC3cXot1eksbs%3D 20534441
    • Ebmeier CC, Taatjes DJ (2010) Activator-Mediator binding regulates Mediator-cofactor interactions. Proc Natl Acad Sci USA 107(25):11283-11288. doi: 10.1073/pnas.0914215107
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.25 , pp. 11283-11288
    • Ebmeier, C.C.1    Taatjes, D.J.2
  • 92
    • 84882738244 scopus 로고    scopus 로고
    • Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites
    • 1:STN:528:DC%2BC3sXht1yiu7jL
    • Yan J, Enge M, Whitington T, Dave K, Liu J, Sur I, Schmierer B, Jolma A, Kivioja T, Taipale M, Taipale J (2013) Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites. Cell 154(4):801-813. doi: 10.1016/j.cell.2013.07.034
    • (2013) Cell , vol.154 , Issue.4 , pp. 801-813
    • Yan, J.1    Enge, M.2    Whitington, T.3    Dave, K.4    Liu, J.5    Sur, I.6    Schmierer, B.7    Jolma, A.8    Kivioja, T.9    Taipale, M.10    Taipale, J.11
  • 97
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • 1:STN:528:DC%2BD3MXmtVWltro%3D
    • Jenuwein T, Allis CD (2001) Translating the histone code. Science 293(5532):1074-1080. doi: 10.1126/science.1063127
    • (2001) Science , vol.293 , Issue.5532 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 98
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Consortium EP, Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermuller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaoz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Loytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA, Program NCS, Baylor College of Medicine Human Genome Sequencing C, Washington University Genome Sequencing C, Broad I, Children's Hospital Oakland Research I, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrimsdottir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447(7146):799-816. doi: 10.1038/nature05874
    • (2007) Nature , vol.447 , Issue.7146
  • 104
    • 84891711796 scopus 로고    scopus 로고
    • The MLL3/MLL4 branches of the COMPASS family function as major histone H3K4 monomethylases at enhancers
    • 3838007 1:STN:528:DC%2BC3sXhvVCjtb7I 24081332
    • Hu D, Gao X, Morgan MA, Herz HM, Smith ER, Shilatifard A (2013) The MLL3/MLL4 branches of the COMPASS family function as major histone H3K4 monomethylases at enhancers. Mol Cell Biol 33(23):4745-4754. doi: 10.1128/MCB.01181-13
    • (2013) Mol Cell Biol , vol.33 , Issue.23 , pp. 4745-4754
    • Hu, D.1    Gao, X.2    Morgan, M.A.3    Herz, H.M.4    Smith, E.R.5    Shilatifard, A.6
  • 105
    • 84870490787 scopus 로고    scopus 로고
    • Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4
    • 3521626 1:STN:528:DC%2BC38XhvVKlsrvL 23166019
    • Herz HM, Mohan M, Garruss AS, Liang K, Takahashi YH, Mickey K, Voets O, Verrijzer CP, Shilatifard A (2012) Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4. Genes Dev 26(23):2604-2620. doi: 10.1101/gad.201327.112
    • (2012) Genes Dev , vol.26 , Issue.23 , pp. 2604-2620
    • Herz, H.M.1    Mohan, M.2    Garruss, A.S.3    Liang, K.4    Takahashi, Y.H.5    Mickey, K.6    Voets, O.7    Verrijzer, C.P.8    Shilatifard, A.9
  • 107
    • 84894066697 scopus 로고    scopus 로고
    • Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing
    • 3929413 1:STN:528:DC%2BC2cXmtVGkt7k%3D 24550119
    • Tie F, Banerjee R, Saiakhova AR, Howard B, Monteith KE, Scacheri PC, Cosgrove MS, Harte PJ (2014) Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing. Development 141(5):1129-1139. doi: 10.1242/dev.102392
    • (2014) Development , vol.141 , Issue.5 , pp. 1129-1139
    • Tie, F.1    Banerjee, R.2    Saiakhova, A.R.3    Howard, B.4    Monteith, K.E.5    Scacheri, P.C.6    Cosgrove, M.S.7    Harte, P.J.8
  • 108
    • 79960643838 scopus 로고    scopus 로고
    • Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription
    • 3160253 1:STN:528:DC%2BC3MXnvVektLo%3D 21694722
    • Ardehali MB, Mei A, Zobeck KL, Caron M, Lis JT, Kusch T (2011) Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription. EMBO J 30(14):2817-2828. doi: 10.1038/emboj.2011.194
    • (2011) EMBO J , vol.30 , Issue.14 , pp. 2817-2828
    • Ardehali, M.B.1    Mei, A.2    Zobeck, K.L.3    Caron, M.4    Lis, J.T.5    Kusch, T.6
  • 111
    • 57349124451 scopus 로고    scopus 로고
    • Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS
    • 2593441 1:STN:528:DC%2BD1cXhsV2mtLjL 18838538
    • Wu M, Wang PF, Lee JS, Martin-Brown S, Florens L, Washburn M, Shilatifard A (2008) Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS. Mol Cell Biol 28(24):7337-7344. doi: 10.1128/MCB.00976-08
    • (2008) Mol Cell Biol , vol.28 , Issue.24 , pp. 7337-7344
    • Wu, M.1    Wang, P.F.2    Lee, J.S.3    Martin-Brown, S.4    Florens, L.5    Washburn, M.6    Shilatifard, A.7
  • 113
    • 0025101148 scopus 로고
    • Definition of the minimal requirements within the human beta-globin gene and the dominant control region for high level expression
    • 551652 1:STN:528:DyaK3cXhtlemsL0%3D 2295312
    • Collis P, Antoniou M, Grosveld F (1990) Definition of the minimal requirements within the human beta-globin gene and the dominant control region for high level expression. EMBO J 9(1):233-240
    • (1990) EMBO J , vol.9 , Issue.1 , pp. 233-240
    • Collis, P.1    Antoniou, M.2    Grosveld, F.3
  • 114
    • 0030826364 scopus 로고    scopus 로고
    • Intergenic transcription and transinduction of the human beta-globin locus
    • 316561 1:STN:528:DyaK2sXmslajtr0%3D 9334315
    • Ashe HL, Monks J, Wijgerde M, Fraser P, Proudfoot NJ (1997) Intergenic transcription and transinduction of the human beta-globin locus. Genes Dev 11(19):2494-2509
    • (1997) Genes Dev , vol.11 , Issue.19 , pp. 2494-2509
    • Ashe, H.L.1    Monks, J.2    Wijgerde, M.3    Fraser, P.4    Proudfoot, N.J.5
  • 115
    • 0026482145 scopus 로고
    • Transcription of the hypersensitive site HS2 enhancer in erythroid cells
    • 50521 1:STN:528:DyaK3sXnsVKktw%3D%3D 1454801
    • Tuan D, Kong S, Hu K (1992) Transcription of the hypersensitive site HS2 enhancer in erythroid cells. Proc Natl Acad Sci USA 89(23):11219-11223
    • (1992) Proc Natl Acad Sci USA , vol.89 , Issue.23 , pp. 11219-11223
    • Tuan, D.1    Kong, S.2    Hu, K.3
  • 116
    • 0030921097 scopus 로고    scopus 로고
    • Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position, and distance of the enhancer relative to the gene
    • 232248 1:STN:528:DyaK2sXktFOgsrk%3D 9199330
    • Kong S, Bohl D, Li C, Tuan D (1997) Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position, and distance of the enhancer relative to the gene. Mol Cell Biol 17(7):3955-3965
    • (1997) Mol Cell Biol , vol.17 , Issue.7 , pp. 3955-3965
    • Kong, S.1    Bohl, D.2    Li, C.3    Tuan, D.4
  • 117
    • 21744448354 scopus 로고    scopus 로고
    • The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter
    • 1:STN:528:DC%2BD2MXlvFymsrY%3D
    • Ling J, Baibakov B, Pi W, Emerson BM, Tuan D (2005) The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter. J Mol Biol 350(5):883-896. doi: 10.1016/j.jmb.2005.05.039
    • (2005) J Mol Biol , vol.350 , Issue.5 , pp. 883-896
    • Ling, J.1    Baibakov, B.2    Pi, W.3    Emerson, B.M.4    Tuan, D.5
  • 118
    • 0034854577 scopus 로고    scopus 로고
    • Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter
    • 1:STN:528:DC%2BD3MXmvFWgt7w%3D11545748
    • Johnson KD, Christensen HM, Zhao B, Bresnick EH (2001) Distinct mechanisms control RNA polymerase II recruitment to a tissue-specific locus control region and a downstream promoter. Mol Cell 8(2):465-471
    • (2001) Mol Cell , vol.8 , Issue.2 , pp. 465-471
    • Johnson, K.D.1    Christensen, H.M.2    Zhao, B.3    Bresnick, E.H.4
  • 119
    • 0041689973 scopus 로고    scopus 로고
    • Highly restricted localization of RNA polymerase II within a locus control region of a tissue-specific chromatin domain
    • 193707 1:STN:528:DC%2BD3sXntFKrtbk%3D 12944475
    • Johnson KD, Grass JA, Park C, Im H, Choi K, Bresnick EH (2003) Highly restricted localization of RNA polymerase II within a locus control region of a tissue-specific chromatin domain. Mol Cell Biol 23(18):6484-6493
    • (2003) Mol Cell Biol , vol.23 , Issue.18 , pp. 6484-6493
    • Johnson, K.D.1    Grass, J.A.2    Park, C.3    Im, H.4    Choi, K.5    Bresnick, E.H.6
  • 123
    • 84921391750 scopus 로고    scopus 로고
    • Life without A tail: New formats of long noncoding RNAs
    • Zhang Y, Yang L, Chen LL (2013) Life without A tail: New formats of long noncoding RNAs. Int J Biochem Cell Biol. doi: 10.1016/j.biocel.2013.10.009
    • (2013) Int J Biochem Cell Biol
    • Zhang, Y.1    Yang, L.2    Chen, L.L.3
  • 126
    • 84881171344 scopus 로고    scopus 로고
    • Enhancer transcripts mark active estrogen receptor binding sites
    • 3730096 1:STN:528:DC%2BC3sXhtlSntr%2FI 23636943
    • Hah N, Murakami S, Nagari A, Danko CG, Kraus WL (2013) Enhancer transcripts mark active estrogen receptor binding sites. Genome Res 23(8):1210-1223. doi: 10.1101/gr.152306.112
    • (2013) Genome Res , vol.23 , Issue.8 , pp. 1210-1223
    • Hah, N.1    Murakami, S.2    Nagari, A.3    Danko, C.G.4    Kraus, W.L.5
  • 129
    • 84927559450 scopus 로고    scopus 로고
    • Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
    • 1:STN:528:DC%2BC2cXhvFKmtbbI
    • Core LJ, Martins AL, Danko CG, Waters CT, Siepel A, Lis JT (2014) Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers. Nat Genet 46(12):1311-1320. doi: 10.1038/ng.3142
    • (2014) Nat Genet , vol.46 , Issue.12 , pp. 1311-1320
    • Core, L.J.1    Martins, A.L.2    Danko, C.G.3    Waters, C.T.4    Siepel, A.5    Lis, J.T.6
  • 130
    • 79955836460 scopus 로고    scopus 로고
    • A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
    • 3099127 1:STN:528:DC%2BC3MXmtFGmtb8%3D 21549415
    • Hah N, Danko CG, Core L, Waterfall JJ, Siepel A, Lis JT, Kraus WL (2011) A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell 145(4):622-634. doi: 10.1016/j.cell.2011.03.042
    • (2011) Cell , vol.145 , Issue.4 , pp. 622-634
    • Hah, N.1    Danko, C.G.2    Core, L.3    Waterfall, J.J.4    Siepel, A.5    Lis, J.T.6    Kraus, W.L.7
  • 132
    • 84883756441 scopus 로고    scopus 로고
    • ERNAs promote transcription by establishing chromatin accessibility at defined genomic loci
    • 3786356 1:STN:528:DC%2BC3sXhtlGqsrrE 23993744
    • Mousavi K, Zare H, Dell'orso S, Grontved L, Gutierrez-Cruz G, Derfoul A, Hager GL, Sartorelli V (2013) eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci. Mol Cell 51(5):606-617. doi: 10.1016/j.molcel.2013.07.022
    • (2013) Mol Cell , vol.51 , Issue.5 , pp. 606-617
    • Mousavi, K.1    Zare, H.2    Dell'Orso, S.3    Grontved, L.4    Gutierrez-Cruz, G.5    Derfoul, A.6    Hager, G.L.7    Sartorelli, V.8
  • 133
    • 84867648038 scopus 로고    scopus 로고
    • A noncoding RNA regulates the neurogenin1 gene locus during mouse neocortical development
    • 3479495 1:STN:528:DC%2BC38Xhs1WksLzM 23027973
    • Onoguchi M, Hirabayashi Y, Koseki H, Gotoh Y (2012) A noncoding RNA regulates the neurogenin1 gene locus during mouse neocortical development. Proc Natl Acad Sci USA 109(42):16939-16944. doi: 10.1073/pnas.1202956109
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.42 , pp. 16939-16944
    • Onoguchi, M.1    Hirabayashi, Y.2    Koseki, H.3    Gotoh, Y.4
  • 134
    • 70149123708 scopus 로고    scopus 로고
    • Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
    • 2722021
    • Ponjavic J, Oliver PL, Lunter G, Ponting CP (2009) Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain. PLoS Genet 5(8):e1000617. doi: 10.1371/journal.pgen.1000617
    • (2009) PLoS Genet , vol.5 , Issue.8 , pp. 1000617
    • Ponjavic, J.1    Oliver, P.L.2    Lunter, G.3    Ponting, C.P.4
  • 138
    • 84869502375 scopus 로고    scopus 로고
    • Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
    • 3501570 1:STN:528:DC%2BC38XhsV2rsb%2FL 23064439
    • Lin YC, Benner C, Mansson R, Heinz S, Miyazaki K, Miyazaki M, Chandra V, Bossen C, Glass CK, Murre C (2012) Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate. Nat Immunol 13(12):1196-1204. doi: 10.1038/ni.2432
    • (2012) Nat Immunol , vol.13 , Issue.12 , pp. 1196-1204
    • Lin, Y.C.1    Benner, C.2    Mansson, R.3    Heinz, S.4    Miyazaki, K.5    Miyazaki, M.6    Chandra, V.7    Bossen, C.8    Glass, C.K.9    Murre, C.10
  • 139
    • 80052972698 scopus 로고    scopus 로고
    • The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin
    • 3176448 1:STN:528:DC%2BC3MXhtFymsLvL 21925392
    • Bertani S, Sauer S, Bolotin E, Sauer F (2011) The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin. Mol Cell 43(6):1040-1046. doi: 10.1016/j.molcel.2011.08.019
    • (2011) Mol Cell , vol.43 , Issue.6 , pp. 1040-1046
    • Bertani, S.1    Sauer, S.2    Bolotin, E.3    Sauer, F.4
  • 140
    • 84874025014 scopus 로고    scopus 로고
    • The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-gamma locus
    • 3577098 1:STN:528:DC%2BC3sXis1Oiu7c%3D 23415224
    • Gomez JA, Wapinski OL, Yang YW, Bureau JF, Gopinath S, Monack DM, Chang HY, Brahic M, Kirkegaard K (2013) The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-gamma locus. Cell 152(4):743-754. doi: 10.1016/j.cell.2013.01.015
    • (2013) Cell , vol.152 , Issue.4 , pp. 743-754
    • Gomez, J.A.1    Wapinski, O.L.2    Yang, Y.W.3    Bureau, J.F.4    Gopinath, S.5    Monack, D.M.6    Chang, H.Y.7    Brahic, M.8    Kirkegaard, K.9
  • 143
    • 33845452031 scopus 로고    scopus 로고
    • Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference
    • 1866366 1:STN:528:DC%2BD2sXhs1ensg%3D%3D 17174895
    • Petruk S, Sedkov Y, Riley KM, Hodgson J, Schweisguth F, Hirose S, Jaynes JB, Brock HW, Mazo A (2006) Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference. Cell 127(6):1209-1221. doi: 10.1016/j.cell.2006.10.039
    • (2006) Cell , vol.127 , Issue.6 , pp. 1209-1221
    • Petruk, S.1    Sedkov, Y.2    Riley, K.M.3    Hodgson, J.4    Schweisguth, F.5    Hirose, S.6    Jaynes, J.B.7    Brock, H.W.8    Mazo, A.9
  • 145
    • 80054684399 scopus 로고    scopus 로고
    • Long non-coding RNA modifies chromatin: Epigenetic silencing by long non-coding RNAs
    • 3258546 1:STN:528:DC%2BC3MXhtlagtrbF 21915889
    • Saxena A, Carninci P (2011) Long non-coding RNA modifies chromatin: epigenetic silencing by long non-coding RNAs. BioEssays 33(11):830-839. doi: 10.1002/bies.201100084
    • (2011) BioEssays , vol.33 , Issue.11 , pp. 830-839
    • Saxena, A.1    Carninci, P.2
  • 147
    • 79951516056 scopus 로고    scopus 로고
    • A unique chromatin signature uncovers early developmental enhancers in humans
    • 1:STN:528:DC%2BC3cXhsFKlsr%2FO
    • Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J (2011) A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470(7333):279-283. doi: 10.1038/nature09692
    • (2011) Nature , vol.470 , Issue.7333 , pp. 279-283
    • Rada-Iglesias, A.1    Bajpai, R.2    Swigut, T.3    Brugmann, S.A.4    Flynn, R.A.5    Wysocka, J.6
  • 148
    • 80051564877 scopus 로고    scopus 로고
    • Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
    • 3149494 1:STN:528:DC%2BC3MXpvFeqs7s%3D 21632746
    • Zentner GE, Tesar PJ, Scacheri PC (2011) Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Res 21(8):1273-1283. doi: 10.1101/gr.122382.111
    • (2011) Genome Res , vol.21 , Issue.8 , pp. 1273-1283
    • Zentner, G.E.1    Tesar, P.J.2    Scacheri, P.C.3
  • 149
    • 0022351149 scopus 로고
    • A distant gene deletion affects beta-globin gene function in an atypical gamma delta beta-thalassemia
    • 424127 1:STN:528:DyaL2MXlvFSrtrk%3D 2997283
    • Curtin P, Pirastu M, Kan YW, Gobert-Jones JA, Stephens AD, Lehmann H (1985) A distant gene deletion affects beta-globin gene function in an atypical gamma delta beta-thalassemia. J Clin Investig 76(4):1554-1558. doi: 10.1172/JCI112136
    • (1985) J Clin Investig , vol.76 , Issue.4 , pp. 1554-1558
    • Curtin, P.1    Pirastu, M.2    Kan, Y.W.3    Gobert-Jones, J.A.4    Stephens, A.D.5    Lehmann, H.6
  • 150
    • 0012953756 scopus 로고
    • Gamma delta beta-thalassemia due to a de novo mutation deleting the 5′ beta-globin gene activation-region hypersensitive sites
    • 298086 1:STN:528:DyaK3cXlsFOi 2798417
    • Driscoll MC, Dobkin CS, Alter BP (1989) Gamma delta beta-thalassemia due to a de novo mutation deleting the 5′ beta-globin gene activation-region hypersensitive sites. Proc Natl Acad Sci USA 86(19):7470-7474
    • (1989) Proc Natl Acad Sci USA , vol.86 , Issue.19 , pp. 7470-7474
    • Driscoll, M.C.1    Dobkin, C.S.2    Alter, B.P.3
  • 151
    • 0021014396 scopus 로고
    • Beta-globin gene inactivation by DNA translocation in gamma beta-thalassaemia
    • 1:STN:528:DyaL2cXjtVChsA%3D%3D6318113
    • Kioussis D, Vanin E, deLange T, Flavell RA, Grosveld FG (1983) Beta-globin gene inactivation by DNA translocation in gamma beta-thalassaemia. Nature 306(5944):662-666
    • (1983) Nature , vol.306 , Issue.5944 , pp. 662-666
    • Kioussis, D.1    Vanin, E.2    Delange, T.3    Flavell, R.A.4    Grosveld, F.G.5
  • 152
    • 84863869789 scopus 로고    scopus 로고
    • Human limb abnormalities caused by disruption of hedgehog signaling
    • 1:STN:528:DC%2BC38XlvFylu74%3D
    • Anderson E, Peluso S, Lettice LA, Hill RE (2012) Human limb abnormalities caused by disruption of hedgehog signaling. Trends Genet 28(8):364-373. doi: 10.1016/j.tig.2012.03.012
    • (2012) Trends Genet , vol.28 , Issue.8 , pp. 364-373
    • Anderson, E.1    Peluso, S.2    Lettice, L.A.3    Hill, R.E.4
  • 159
    • 53049110907 scopus 로고    scopus 로고
    • Facioscapulohumeral muscular dystrophy
    • 2628543 1:STN:528:DC%2BD1cXhsVWlsbbJ 19019312
    • Tawil R (2008) Facioscapulohumeral muscular dystrophy. Neurotherapeutics 5(4):601-606. doi: 10.1016/j.nurt.2008.07.005
    • (2008) Neurotherapeutics , vol.5 , Issue.4 , pp. 601-606
    • Tawil, R.1
  • 162
    • 33646485687 scopus 로고    scopus 로고
    • Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts
    • 1459005 1:STN:528:DC%2BD28XkslCksbc%3D 16632607
    • Petrov A, Pirozhkova I, Laoudj D, Carnac G, Lipinski M, Vassetzky YS (2006) Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts. Proc Natl Acad Sci USA 103:6982-6987
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 6982-6987
    • Petrov, A.1    Pirozhkova, I.2    Laoudj, D.3    Carnac, G.4    Lipinski, M.5    Vassetzky, Y.S.6
  • 163
    • 9444294990 scopus 로고    scopus 로고
    • Genetics and epigenetics of progressive fascioscapulohumeral (landouzy-dejerine) muscular dystrophy
    • 1:STN:528:DC%2BD3sXhtlahsL0%3D
    • Petrov AP, Laoudj D, Vassetzky YS (2003) Genetics and epigenetics of progressive fascioscapulohumeral (landouzy-dejerine) muscular dystrophy. Genetics (Moscow) 39(2):147-151
    • (2003) Genetics (Moscow) , vol.39 , Issue.2 , pp. 147-151
    • Petrov, A.P.1    Laoudj, D.2    Vassetzky, Y.S.3
  • 164
    • 38049094992 scopus 로고    scopus 로고
    • A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: Implications for the facio-scapulo-humeral dystrophy
    • 2134777 1:STN:528:DC%2BD1cXnvFyl 18032730
    • Petrov AV, Allinne J, Pirozhkova IV, Laoudj D, Lipinski M, Vassetzky YS (2008) A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: implications for the facio-scapulo-humeral dystrophy. Genome Res 18(1):39-45
    • (2008) Genome Res , vol.18 , Issue.1 , pp. 39-45
    • Petrov, A.V.1    Allinne, J.2    Pirozhkova, I.V.3    Laoudj, D.4    Lipinski, M.5    Vassetzky, Y.S.6
  • 166
    • 0032862871 scopus 로고    scopus 로고
    • The FSHD region on human chromosome 4q35 contains potential coding regions among pseudogenes and a high density of repeat elements
    • van Geel M, Heather LJ, Lyle R, Hewitt JE, Frants RR, de Jong PJ (1999) The FSHD region on human chromosome 4q35 contains potential coding regions among pseudogenes and a high density of repeat elements. Genomics 61(1):55-65
    • (1999) Genomics , vol.61 , Issue.1 , pp. 55-65
    • Van Geel, M.1    Heather, L.J.2    Lyle, R.3    Hewitt, J.E.4    Frants, R.R.5    De Jong, P.J.6
  • 167
    • 58849093548 scopus 로고    scopus 로고
    • Pearls in the junk: Dissecting the molecular pathogenesis of facioscapulohumeral muscular dystrophy
    • 18974002
    • Dmitriev P, Lipinski M, Vassetzky YS (2009) Pearls in the junk: dissecting the molecular pathogenesis of facioscapulohumeral muscular dystrophy. Neuromuscul Disord 19:17-20. doi: 10.1016/j.nmd.2008.09.004
    • (2009) Neuromuscul Disord , vol.19 , pp. 17-20
    • Dmitriev, P.1    Lipinski, M.2    Vassetzky, Y.S.3
  • 168
    • 84902517476 scopus 로고    scopus 로고
    • Facioscapulohumeral dystrophy: The path to consensus on pathophysiology
    • 4060068
    • Tawil R, van der Maarel SM, Tapscott SJ (2014) Facioscapulohumeral dystrophy: the path to consensus on pathophysiology. Skelet Muscle 4:12. doi: 10.1186/2044-5040-4-12
    • (2014) Skelet Muscle , vol.4 , pp. 12
    • Tawil, R.1    Van Der Maarel, S.M.2    Tapscott, S.J.3
  • 169
    • 84455169950 scopus 로고    scopus 로고
    • The Krüppel-like factor KLF15 is a key actor in upregulation of the 4q35 genes DUX4c and FRG2 in FSHD muscles
    • Dmitriev P, Petrov A, Ansseau E, Charron S, Coppée F, Belayew A, Carnac G, Turki A, Laoudj D, Lipinski M, Vassetzky YS (2011) The Krüppel-like factor KLF15 is a key actor in upregulation of the 4q35 genes DUX4c and FRG2 in FSHD muscles. J Biol Chem. doi: 10.1074/jbc.M1111.254052
    • (2011) J Biol Chem
    • Dmitriev P, P.1
  • 170
    • 84860885909 scopus 로고    scopus 로고
    • A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy
    • 3350859 1:STN:528:DC%2BC38Xmt1Gqs7Y%3D 22541069
    • Cabianca DS, Casa V, Bodega B, Xynos A, Ginelli E, Tanaka Y, Gabellini D (2012) A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy. Cell 149(4):819-831. doi: 10.1016/j.cell.2012.03.035
    • (2012) Cell , vol.149 , Issue.4 , pp. 819-831
    • Cabianca, D.S.1    Casa, V.2    Bodega, B.3    Xynos, A.4    Ginelli, E.5    Tanaka, Y.6    Gabellini, D.7
  • 173
    • 79955471262 scopus 로고    scopus 로고
    • Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease
    • 3083485 1:STN:528:DC%2BC3MXjvVOgsr4%3D 21441919
    • Ghiasvand NM, Rudolph DD, Mashayekhi M, Brzezinski JAt, Goldman D, Glaser T (2011) Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease. Nat Neurosci 14(5):578-586. doi: 10.1038/nn.2798
    • (2011) Nat Neurosci , vol.14 , Issue.5 , pp. 578-586
    • Ghiasvand, N.M.1    Rudolph, D.D.2    Mashayekhi, M.3    Brzezinski, J.4    Goldman, D.5    Glaser, T.6
  • 175
  • 177
    • 84864624041 scopus 로고    scopus 로고
    • Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus
    • 3409257 1:STN:528:DC%2BC38XhtFOnsL3P 22665440
    • Zhang X, Cowper-Sal-lari R, Bailey SD, Moore JH, Lupien M (2012) Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus. Genome Res 22(8):1437-1446. doi: 10.1101/gr.135665.111
    • (2012) Genome Res , vol.22 , Issue.8 , pp. 1437-1446
    • Zhang, X.1    Cowper-Sal-Lari, R.2    Bailey, S.D.3    Moore, J.H.4    Lupien, M.5
  • 179
    • 84899924140 scopus 로고    scopus 로고
    • Translocations affecting human immunoglobulin heavy chain locus
    • Sklyar I, Iarovaia OI, Lipinski M, Vassetzky YS (2014) Translocations affecting human immunoglobulin heavy chain locus. Biopolym Cell 30(2):91-95. doi: 10.7124/bc.000886
    • (2014) Biopolym Cell , vol.30 , Issue.2 , pp. 91-95
    • Sklyar, I.1    Iarovaia, O.I.2    Lipinski, M.3    Vassetzky, Y.S.4
  • 180
    • 72049100181 scopus 로고    scopus 로고
    • Long-range oncogenic activation of Igh-c-myc translocations by the Igh 3′ regulatory region
    • 2802177 1:STN:528:DC%2BD1MXhsFersrnF 20010689
    • Gostissa M, Yan CT, Bianco JM, Cogne M, Pinaud E, Alt FW (2009) Long-range oncogenic activation of Igh-c-myc translocations by the Igh 3′ regulatory region. Nature 462(7274):803-807. doi: 10.1038/nature08633
    • (2009) Nature , vol.462 , Issue.7274 , pp. 803-807
    • Gostissa, M.1    Yan, C.T.2    Bianco, J.M.3    Cogne, M.4    Pinaud, E.5    Alt, F.W.6
  • 183
    • 0025096741 scopus 로고
    • Mutation of the core or adjacent LVb elements of the Moloney murine leukemia virus enhancer alters disease specificity
    • 1:STN:528:DyaK3cXhsFaltbc%3D2338244
    • Speck NA, Renjifo B, Golemis E, Fredrickson TN, Hartley JW, Hopkins N (1990) Mutation of the core or adjacent LVb elements of the Moloney murine leukemia virus enhancer alters disease specificity. Genes Dev 4(2):233-242
    • (1990) Genes Dev , vol.4 , Issue.2 , pp. 233-242
    • Speck, N.A.1    Renjifo, B.2    Golemis, E.3    Fredrickson, T.N.4    Hartley, J.W.5    Hopkins, N.6
  • 188
    • 84873086126 scopus 로고    scopus 로고
    • Chromatin marks identify critical cell types for fine mapping complex trait variants
    • 1:STN:528:DC%2BC38XhvVOqs7zP
    • Trynka G, Sandor C, Han B, Xu H, Stranger BE, Liu XS, Raychaudhuri S (2013) Chromatin marks identify critical cell types for fine mapping complex trait variants. Nat Genet 45(2):124-130. doi: 10.1038/ng.2504
    • (2013) Nat Genet , vol.45 , Issue.2 , pp. 124-130
    • Trynka, G.1    Sandor, C.2    Han, B.3    Xu, H.4    Stranger, B.E.5    Liu, X.S.6    Raychaudhuri, S.7
  • 190
    • 84891697734 scopus 로고    scopus 로고
    • Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits
    • 3875850 1:STN:528:DC%2BC2cXosVCjtw%3D%3D 24196873
    • Corradin O, Saiakhova A, Akhtar-Zaidi B, Myeroff L, Willis J, Cowper-Sal-lari R, Lupien M, Markowitz S, Scacheri PC (2014) Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits. Genome Res 24(1):1-13. doi: 10.1101/gr.164079.113
    • (2014) Genome Res , vol.24 , Issue.1 , pp. 1-13
    • Corradin, O.1    Saiakhova, A.2    Akhtar-Zaidi, B.3    Myeroff, L.4    Willis, J.5    Cowper-Sal-Lari, R.6    Lupien, M.7    Markowitz, S.8    Scacheri, P.C.9
  • 191
    • 84875200257 scopus 로고    scopus 로고
    • Long noncoding RNAs: Cellular address codes in development and disease
    • 3651923 1:STN:528:DC%2BC3sXktFWqtbY%3D 23498938
    • Batista PJ, Chang HY (2013) Long noncoding RNAs: cellular address codes in development and disease. Cell 152(6): 12981307. doi:10.1016/j.cell.2013.02.012
    • (2013) Cell , vol.152 , Issue.6 , pp. 1298-1307
    • Batista, P.J.1    Chang, H.Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.