Cohesin mediates chromatin interactions that regulate mammalian β-globin expression

Journal of Biological Chemistry

Volumn 286, Issue 20, 2011, Pages 17870-17878

  Chien, Richard ^a   Zeng, Weihua ^a   Kawauchi, Shimako ^a   Bender, M A ^c   Santos, Rosaysela ^a   Gregson, Heather C ^a,e   Schmiesing, John A ^a   Newkirk, Daniel A ^a   Kong, Xiangduo ^a   Ball Jr , Alexander R ^a   Calof, Anne L ^a   Lander, Arthur D ^b   Groudine, Mark T ^d   Yokomori, Kyoko ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^d Fred Hutchinson Cancer Research Center   (United States)

^e Focus Diagnostics Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN ORGANIZATION; COHESINS; DISTAL ENHANCERS; ERYTHROID CELLS; GENE ACTIVATION; GENE REGULATIONS; GLOBIN GENE; IN-VITRO; IN-VIVO; LOADING FACTORS; LOCUS CONTROL REGION; MAMMALIAN CELLS; PARTIAL REDUCTION; TARGET GENES; UNDERLYING MECHANISM;

CHROMOSOMES; FADING (RADIO); HEMOGLOBIN; MAMMALS;

GENE EXPRESSION;

BETA GLOBIN; COHESIN; MEMBRANE PROTEIN; NIPPED B LIKE PROTEIN; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BINDING AFFINITY; BINDING SITE; CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; ENHANCER REGION; GENE EXPRESSION REGULATION; GENE LOCUS; GENETIC TRANSFECTION; HETEROZYGOSITY; IN VITRO STUDY; IN VIVO STUDY; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN INTERACTION;

ANIMALS; BETA-GLOBINS; CELL CYCLE PROTEINS; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; ENHANCER ELEMENTS, GENETIC; GENE EXPRESSION REGULATION; HUMANS; INSULATOR ELEMENTS; K562 CELLS; MICE; MUTATION; PROTEINS; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS;

MAMMALIA;

EID: 79955952481     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.207365     Document Type: Article

References (52)

1. Schneider, R., and Grosschedl, R. (2007) Genes Dev. 21, 3027-3043
2. Splinter, E., Heath, H., Kooren, J., Palstra, R. J., Klous, P., Grosveld, F., Galjart, N., and de Laat, W. (2006) Genes Dev. 20, 2349-2354
3. Palstra, R. J., Tolhuis, B., Splinter, E., Nijmeijer, R., Grosveld, F., and de Laat, W. (2003) Nat. Genet. 35, 190-194
4. Carter, D., Chakalova, L., Osborne, C. S., Dai, Y. F., and Fraser, P. (2002) Nat. Genet. 32, 623-626
5. Song, S. H., Hou, C., and Dean, A. (2007) Mol. Cell 28, 810-822
6. Bulger, M., and Groudine, M. (2010) Dev. Biol. 339, 250-257
7. Wood, A. J., Severson, A. F., and Meyer, B. J. (2010) Nat. Rev. Genet. 11, 391-404
8. Wendt, K. S., and Peters, J. M. (2009) Chromosome Res. 17, 201-214
9. Zlatanova, J., and Caiafa, P. (2009) J. Cell Sci. 122, 1275-1284
10. Hadjur, S., Williams, L. M., Ryan, N. K., Cobb, B. S., Sexton, T., Fraser, P., Fisher, A. G., and Merkenschlager, M. (2009) Nature 460, 410-413
11. Mishiro, T., Ishihara, K., Hino, S., Tsutsumi, S., Aburatani, H., Shirahige, K., Kinoshita, Y., and Nakao, M. (2009) EMBO J. 28, 1234-1245
12. Nativio, R., Wendt, K. S., Ito, Y., Huddleston, J. E., Uribe-Lewis, S., Woodfine, K., Krueger, C., Reik, W., Peters, J. M., and Murrell, A. (2009) PLoS Genet. 5, e1000739
13. Kagey, M. H., Newman, J. J., Bilodeau, S., Zhan, Y., Orlando, D. A., van Berkum, N. L., Ebmeier, C. C., Goossens, J., Rahl, P. B., Levine, S. S., Taatjes, D. J., Dekker, J., and Young, R. A. (2010) Nature 467, 430-435
14. Schmidt, D., Schwalie, P. C., Ross-Innes, C. S., Hurtado, A., Brown, G. D., Carroll, J. S., Flicek, P., and Odom, D. T. (2010) Genome Res. 20, 578-588
15. Zeng, W., de Greef, J. C., Chen, Y. Y., Chien, R., Kong, X., Gregson, H. C., Winokur, S. T., Pyle, A., Robertson, K. D., Schmiesing, J. A., Kimonis, V. E., Balog, J., Frants, R. R., Ball, A. R., Jr., Lock, L. F., Donovan, P. J., van der Maarel, S. M., and Yokomori, K. (2009) PLoS Genet. 5, e1000559
16. Kawauchi, S., Calof, A. L., Santos, R., Lopez-Burks, M. E., Young, C. M., Hoang, M. P., Chua, A., Lao, T., Lechner, M. S., Daniel, J. A., Nussenzweig, A., Kitzes, L., Yokomori, K., Hallgrimsson, B., and Lander, A. D. (2009) PLoS Genet. 5, e1000650
17. Parelho, V., Hadjur, S., Spivakov, M., Leleu, M., Sauer, S., Gregson, H. C., Jarmuz, A., Canzonetta, C., Webster, Z., Nesterova, T., Cobb, B. S., Yokomori, K., Dillon, N., Aragon, L., Fisher, A. G., and Merkenschlager, M. (2008) Cell 132, 422-433
18. Hagège, H., Klous, P., Braem, C., Splinter, E., Dekker, J., Cathala, G., de Laat, W., and Forné, T. (2007) Nat. Protoc. 2, 1722-1733
19. Kooren, J., Palstra, R. J., Klous, P., Splinter, E., von Lindern, M., Grosveld, F., and de Laat, W. (2007) J. Biol. Chem. 282, 16544-16552
20. Tolhuis, B., Palstra, R. J., Splinter, E., Grosveld, F., and de Laat, W. (2002) Mol. Cell 10, 1453-1465
21. Cai, S., Lee, C. C., and Kohwi-Shigematsu, T. (2006) Nat. Genet. 38, 1278-1288
22. Kong, X., Mohanty, S. K., Stephens, J., Heale, J. T., Gomez-Godinez, V., Shi, L. Z., Kim, J. S., Yokomori, K., and Berns, M. W. (2009) Nucleic Acids Res. 37, e68
23. Wendt, K. S., Yoshida, K., Itoh, T., Bando, M., Koch, B., Schirghuber, E., Tsutsumi, S., Nagae, G., Ishihara, K., Mishiro, T., Yahata, K., Imamoto, F., Aburatani, H., Nakao, M., Imamoto, N., Maeshima, K., Shirahige, K., and Peters, J. M. (2008) Nature 451, 796-801
24. Friend, C., Scher, W., Holland, J. G., and Sato, T. (1971) Proc. Natl. Acad. Sci. U.S.A. 68, 378-382
25. Farrell, C. M., West, A. G., and Felsenfeld, G. (2002) Mol. Cell. Biol. 22, 3820-3831
26. Andrews, N. C., Erdjument-Bromage, H., Davidson, M. B., Tempst, P., and Orkin, S. H. (1993) Nature 362, 722-728
27. Kovach, J. S., Marks, P. A., Russell, E. S., and Epler, H. (1967) J. Mol. Biol. 25, 131-142
28. Dostie, J., Richmond, T. A., Arnaout, R. A., Selzer, R. R., Lee, W. L., Honan, T. A., Rubio, E. D., Krumm, A., Lamb, J., Nusbaum, C., Green, R. D., and Dekker, J. (2006) Genome Res. 16, 1299-1309
29. Li, Q., Peterson, K. R., Fang, X., and Stamatoyannopoulos, G. (2002) Blood 100, 3077-3086
30. Benz, E. J., Jr., Murnane, M. J., Tonkonow, B. L., Berman, B. W., Mazur, E. M., Cavallesco, C., Jenko, T., Snyder, E. L., Forget, B. G., and Hoffman, R. (1980) Proc. Natl. Acad. Sci. U.S.A. 77, 3509-3513
31. Hou, C., Dale, R., and Dean, A. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 3651-3656
32. Douay, L., and Giarratana, M. C. (2009) Methods Mol. Biol. 482, 127-140
33. Kogut, I., Wang, J., Guacci, V., Mistry, R. K., and Megee, P. C. (2009) Genes Dev. 23, 2345-2357
34. Lengronne, A., Katou, Y., Mori, S., Yokobayashi, S., Kelly, G. P., Itoh, T., Watanabe, Y., Shirahige, K., and Uhlmann, F. (2004) Nature 430, 573-578
35. Bausch, C., Noone, S., Henry, J. M., Gaudenz, K., Sanderson, B., Seidel, C., and Gerton, J. L. (2007) Mol. Cell. Biol. 27, 8522-8532
36. Liu, J., and Krantz, I. D. (2009) Clin. Genet. 76, 303-314
37. Alami, R., Bender, M. A., Feng, Y. Q., Fiering, S. N., Hug, B. A., Ley, T. J., Groudine, M., and Bouhassira, E. E. (2000) Genomics 63, 417-424
38. Bender, M. A., Byron, R., Ragoczy, T., Telling, A., Bulger, M., and Groudine, M. (2006) Blood 108, 1395-1401
39. Bender, M. A., Reik, A., Close, J., Telling, A., Epner, E., Fiering, S., Hardison, R., and Groudine, M. (1998) Blood 92, 4394-4403
40. Farrell, C. M., Grinberg, A., Huang, S. P., Chen, D., Pichel, J. G., Westphal, H., and Felsenfeld, G. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 14554-14559
41. Donze, D., Adams, C. R., Rine, J., and Kamakaka, R. T. (1999) Genes Dev. 13, 698-708
42. Rollins, R. A., Korom, M., Aulner, N., Martens, A., and Dorsett, D. (2004) Mol. Cell. Biol. 24, 3100-3111
43. Wada, Y., Ohta, Y., Xu, M., Tsutsumi, S., Minami, T., Inoue, K., Komura, D., Kitakami, J., Oshida, N., Papantonis, A., Izumi, A., Kobayashi, M., Meguro, H., Kanki, Y., Mimura, I., Yamamoto, K., Mataki, C., Hamakubo, T., Shirahige, K., Aburatani, H., Kimura, H., Kodama, T., Cook, P. R., and Ihara, S. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 18357-18361
44. Jahnke, P., Xu, W., Wülling, M., Albrecht, M., Gabriel, H., Gillessen- Kaesbach, G., and Kaiser, F. J. (2008) Nucleic Acids Res. 36, 6450-6458
45. Misulovin, Z., Schwartz, Y. B., Li, X. Y., Kahn, T. G., Gause, M., MacArthur, S., Fay, J. C., Eisen, M. B., Pirrotta, V., Biggin, M. D., and Dorsett, D. (2008) Chromosoma 117, 89-102
46. Hallson, G., Syrzycka, M., Beck, S. A., Kennison, J. A., Dorsett, D., Page, S. L., Hunter, S. M., Keall, R., Warren, W. D., Brock, H. W., Sinclair, D. A., and Honda, B. M. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 12405-12410
47. Lechner, M. S., Schultz, D. C., Negorev, D., Maul, G. G., and Rauscher, F. J., 3rd (2005) Biochem. Biophys. Res. Commun. 331, 929-937
48. Stedman, W., Kang, H., Lin, S., Kissil, J. L., Bartolomei, M. S., and Lieberman, P. M. (2008) EMBO J. 27, 654-666
49. Rubio, E. D., Reiss, D. J., Welcsh, P. L., Disteche, C. M., Filippova, G. N., Baliga, N. S., Aebersold, R., Ranish, J. A., and Krumm, A. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 8309-8314
50. Brand, M., Ranish, J. A., Kummer, N. T., Hamilton, J., Igarashi, K., Francastel, C., Chi, T. H., Crabtree, G. R., Aebersold, R., and Groudine, M. (2004) Nat. Struct. Mol. Biol. 11, 73-80
51. Drissen, R., Palstra, R. J., Gillemans, N., Splinter, E., Grosveld, F., Philipsen, S., and de Laat, W. (2004) Genes Dev. 18, 2485-2490
52. Vakoc, C. R., Letting, D. L., Gheldof, N., Sawado, T., Bender, M. A., Groudine, M., Weiss, M. J., Dekker, J., and Blobel, G. A. (2005) Mol. Cell 17, 453-462