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Volumn 6, Issue 1, 2013, Pages

Transcription through enhancers suppresses their activity in Drosophila

Author keywords

Chromatin enhancer; Enhancer suppression; Pass through transcription; Transcription interference; Transcription regulation

Indexed keywords

CRE RECOMBINASE; TRANSCRIPTION FACTOR GAL4;

EID: 84884962472     PISSN: None     EISSN: 17568935     Source Type: Journal    
DOI: 10.1186/1756-8935-6-31     Document Type: Article
Times cited : (24)

References (50)
  • 1
    • 79551655285 scopus 로고    scopus 로고
    • Functional and mechanistic diversity of distal transcription enhancers
    • 10.1016/j.cell.2011.01.024 21295696
    • Functional and mechanistic diversity of distal transcription enhancers. Bulger M, Groudine M, Cell 2011 144 327 339 10.1016/j.cell.2011.01.024 21295696
    • (2011) Cell , vol.144 , pp. 327-339
    • Bulger, M.1    Groudine, M.2
  • 2
    • 84876093553 scopus 로고    scopus 로고
    • Transcription factor binding at enhancers: Shaping a genomic regulatory landscape in flux
    • 23060900
    • Transcription factor binding at enhancers: shaping a genomic regulatory landscape in flux. Palstra RJ, Grosveld F, Front Genet 2012 3 195 23060900
    • (2012) Front Genet , vol.3 , pp. 195
    • Palstra, R.J.1    Grosveld, F.2
  • 6
    • 84864098110 scopus 로고    scopus 로고
    • Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome
    • 10.1093/gbe/evs020 22403033
    • Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome. Young RS, Marques AC, Tibbit C, Haerty W, Bassett AR, Liu JL, Ponting CP, Genome Biol Evol 2012 4 427 442 10.1093/gbe/evs020 22403033
    • (2012) Genome Biol Evol , vol.4 , pp. 427-442
    • Young, R.S.1    Marques, A.C.2    Tibbit, C.3    Haerty, W.4    Bassett, A.R.5    Liu, J.L.6    Ponting, C.P.7
  • 7
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • 10.1016/j.molcel.2011.08.018 21925379
    • Molecular mechanisms of long noncoding RNAs. Wang K, Chang H, Mol Cell 2011 43 904 914 10.1016/j.molcel.2011.08.018 21925379
    • (2011) Mol Cell , vol.43 , pp. 904-914
    • Wang, K.1    Chang, H.2
  • 9
    • 33845452031 scopus 로고    scopus 로고
    • Transcription of bxd Noncoding RNAs Promoted by Trithorax Represses Ubx in cis by Transcriptional Interference
    • DOI 10.1016/j.cell.2006.10.039, PII S009286740601467X
    • Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference. Petruk S, Sedkov Y, Riley KM, Hodgson J, Schweisguth F, Hirose S, Jaynes JB, Brock HW, Mazo A, Cell 2006 127 1209 1221 10.1016/j.cell.2006.10.039 17174895 (Pubitemid 44894524)
    • (2006) Cell , vol.127 , Issue.6 , pp. 1209-1221
    • Petruk, S.1    Sedkov, Y.2    Riley, K.M.3    Hodgson, J.4    Schweisguth, F.5    Hirose, S.6    Jaynes, J.B.7    Brock, H.W.8    Mazo, A.9
  • 10
    • 33847032545 scopus 로고    scopus 로고
    • Noncoding RNAs and Intranuclear Positioning in Monoallelic Gene Expression
    • DOI 10.1016/j.cell.2007.01.032, PII S009286740700164X
    • Noncoding RNAs and intranuclear positioning in monoallelic gene expression. Yang PK, Kuroda MI, Cell 2007 128 777 786 10.1016/j.cell.2007.01.032 17320513 (Pubitemid 46273575)
    • (2007) Cell , vol.128 , Issue.4 , pp. 777-786
    • Yang, P.K.1    Kuroda, M.I.2
  • 11
    • 33746069681 scopus 로고    scopus 로고
    • Dosage compensation in mammals: Fine-tuning the expression of the X chromosome
    • DOI 10.1101/gad.1422906
    • Dosage compensation in mammals: fine-tuning the expression of the X chromosome. Heard E, Disteche CM, Genes Dev 2006 20 1848 1867 10.1101/gad.1422906 16847345 (Pubitemid 44079323)
    • (2006) Genes and Development , vol.20 , Issue.14 , pp. 1848-1867
    • Heard, E.1    Disteche, C.M.2
  • 12
    • 34250729138 scopus 로고    scopus 로고
    • Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs
    • DOI 10.1016/j.cell.2007.05.022, PII S0092867407006599
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E, Chang HY, Cell 2007 129 1311 1323 10.1016/j.cell.2007.05.022 17604720 (Pubitemid 46962090)
    • (2007) Cell , vol.129 , Issue.7 , pp. 1311-1323
    • Rinn, J.L.1    Kertesz, M.2    Wang, J.K.3    Squazzo, S.L.4    Xu, X.5    Brugmann, S.A.6    Goodnough, L.H.7    Helms, J.A.8    Farnham, P.J.9    Segal, E.10    Chang, H.Y.11
  • 13
    • 15444361900 scopus 로고    scopus 로고
    • Intergenic transcription through a Polycomb group response element counteracts silencing
    • DOI 10.1101/gad.326205
    • Intergenic transcription through a Polycomb group response element counteracts silencing. Schmitt S, Prestel M, Paro R, Genes Dev 2005 19 697 708 10.1101/gad.326205 15741315 (Pubitemid 40395081)
    • (2005) Genes and Development , vol.19 , Issue.6 , pp. 697-708
    • Schmitt, S.1    Prestel, M.2    Paro, R.3
  • 18
    • 79957538539 scopus 로고    scopus 로고
    • RNA templating the epigenome: Long noncoding RNAs as molecular scaffolds
    • 10.4161/epi.6.5.15221 21393997
    • RNA templating the epigenome: long noncoding RNAs as molecular scaffolds. Spitale RC, Tsai MC, Chang HY, Epigenetics 2011 6 539 543 10.4161/epi.6.5.15221 21393997
    • (2011) Epigenetics , vol.6 , pp. 539-543
    • Spitale, R.C.1    Tsai, M.C.2    Chang, H.Y.3
  • 19
    • 79952261920 scopus 로고    scopus 로고
    • Transcriptional interference by RNA polymerase pausing and dislodgement of transcription factors
    • 10.4161/trns.2.1.13511 21326903
    • Transcriptional interference by RNA polymerase pausing and dislodgement of transcription factors. Palmer AC, Egan JB, Shearwin KE, Transcription 2011 2 9 14 10.4161/trns.2.1.13511 21326903
    • (2011) Transcription , vol.2 , pp. 9-14
    • Palmer, A.C.1    Egan, J.B.2    Shearwin, K.E.3
  • 20
    • 34548555700 scopus 로고    scopus 로고
    • Transcriptional interference: An unexpected layer of complexity in gene regulation
    • DOI 10.1242/jcs.007633
    • Transcriptional interference: an unexpected layer of complexity in gene regulation. Mazo A, Hodgson JW, Petruk S, Sedkov Y, Brock HW, J Cell Sci 2007 120 2755 2761 10.1242/jcs.007633 17690303 (Pubitemid 47394250)
    • (2007) Journal of Cell Science , vol.120 , Issue.16 , pp. 2755-2761
    • Mazo, A.1    Hodgson, J.W.2    Petruk, S.3    Sedkov, Y.4    Brock, H.W.5
  • 21
    • 2942560254 scopus 로고    scopus 로고
    • Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
    • DOI 10.1038/nature02538
    • Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Martens JA, Laprade L, Winston F, Nature 2004 429 571 574 10.1038/nature02538 15175754 (Pubitemid 38737662)
    • (2004) Nature , vol.429 , Issue.6991 , pp. 571-574
    • Martens, J.A.1    Laprade, L.2    Winston, F.3
  • 22
    • 33845698923 scopus 로고    scopus 로고
    • Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts
    • DOI 10.1038/sj.emboj.7601453, PII 7601453
    • Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts. Bird AJ, Gordon M, Eide DJ, Winge DR, EMBO J 2006 25 5726 5734 10.1038/sj.emboj.7601453 17139254 (Pubitemid 44967756)
    • (2006) EMBO Journal , vol.25 , Issue.24 , pp. 5726-5734
    • Bird, A.J.1    Gordon, M.2    Eide, D.J.3    Winge, D.R.4
  • 23
    • 0026720013 scopus 로고
    • Molecular analysis of the zeste-white interaction reveals a promoter-proximal element essential for distant enhancer-promoter communication
    • 1375573
    • Molecular analysis of the zeste-white interaction reveals a promoter-proximal element essential for distant enhancer-promoter communication. Qian S, Varjavand B, Pirrotta V, Genetics 1992 131 79 90 1375573
    • (1992) Genetics , vol.131 , pp. 79-90
    • Qian, S.1    Varjavand, B.2    Pirrotta, V.3
  • 24
    • 0023445598 scopus 로고
    • Separate regulatory elements are responsible for the complex pattern of tissue-specific and developmental transcription of the yellow locus in Drosophila melanogaster
    • 10.1101/gad.1.9.996 3123324
    • Separate regulatory elements are responsible for the complex pattern of tissue-specific and developmental transcription of the yellow locus in Drosophila melanogaster. Geyer PK, Corces VG, Genes Dev 1987 1 996 1004 10.1101/gad.1.9.996 3123324
    • (1987) Genes Dev , vol.1 , pp. 996-1004
    • Geyer, P.K.1    Corces, V.G.2
  • 25
    • 0024402035 scopus 로고
    • Regulatory elements involved in the tissue-specific expression of the yellow gene of Drosophila
    • Regulatory elements involved in the tissue-specific expression of the yellow gene of Drosophila. Martin M, Meng YB, Chia W, Mol Gen Genet 1989 218 118 126 10.1007/BF00330574 2550760 (Pubitemid 19176613)
    • (1989) Molecular and General Genetics , vol.218 , Issue.1 , pp. 118-126
    • Martin, M.1    Meng, Y.B.2    Chia, W.3
  • 26
    • 0027160708 scopus 로고
    • Targeted gene expression as a means of altering cell fates and generating dominant phenotypes
    • Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Brand AH, Perrimon N, Development 1993 118 401 415 8223268 (Pubitemid 23214028)
    • (1993) Development , vol.118 , Issue.2 , pp. 401-415
    • Brand, A.H.1    Perrimon, N.2
  • 27
    • 75649087349 scopus 로고    scopus 로고
    • Drosophila mini-white model system: New insights into positive position effects and the role of transcriptional terminators and gypsy insulator in transgene shielding
    • 10.1093/nar/gkp877 19854952
    • Drosophila mini-white model system: new insights into positive position effects and the role of transcriptional terminators and gypsy insulator in transgene shielding. Silicheva M, Golovnin A, Pomerantseva E, Parshikov A, Georgiev P, Maksimenko O, Nucleic Acids Res 2010 38 39 47 10.1093/nar/gkp877 19854952
    • (2010) Nucleic Acids Res , vol.38 , pp. 39-47
    • Silicheva, M.1    Golovnin, A.2    Pomerantseva, E.3    Parshikov, A.4    Georgiev, P.5    Maksimenko, O.6
  • 28
    • 69249215212 scopus 로고    scopus 로고
    • Zeste can facilitate long-range enhancer-promoter communication and insulator bypass in Drosophila melanogaster
    • 10.1007/s00412-009-0226-4 19578867
    • Zeste can facilitate long-range enhancer-promoter communication and insulator bypass in Drosophila melanogaster. Kostyuchenko M, Savitskaya E, Koryagina E, Melnikova L, Karakozova M, Georgiev P, Chromosoma 2009 118 665 764 10.1007/s00412-009-0226-4 19578867
    • (2009) Chromosoma , vol.118 , pp. 665-764
    • Kostyuchenko, M.1    Savitskaya, E.2    Koryagina, E.3    Melnikova, L.4    Karakozova, M.5    Georgiev, P.6
  • 29
    • 33750442876 scopus 로고    scopus 로고
    • Large-scale turnover of functional transcription factor binding sites in Drosophila
    • DOI 10.1371/journal.pcbi.0020130
    • Large-scale turnover of functional transcription factor binding sites in Drosophila. Moses AM, Pollard DA, Nix DA, Iyer VN, Li XY, Biggin MD, Eisen MB, PLoS Comput Biol 2006 2 130 10.1371/journal.pcbi.0020130 17040121 (Pubitemid 44656516)
    • (2006) PLoS Computational Biology , vol.2 , Issue.10 , pp. 1219-1231
    • Moses, A.M.1    Pollard, D.A.2    Nix, D.A.3    Iyer, V.N.4    Li, X.-Y.5    Biggin, M.D.6    Eisen, M.B.7
  • 30
    • 1842457722 scopus 로고    scopus 로고
    • Chromatin inheritance upon Zeste-mediated Brahma recruitment at a minimal cellular memory module
    • DOI 10.1038/sj.emboj.7600108
    • Chromatin inheritance upon Zeste-mediated Brahma recruitment at a minimal cellular memory module. Déjardin J, Cavalli G, EMBO J 2004 23 857 868 10.1038/sj.emboj.7600108 14963490 (Pubitemid 38418752)
    • (2004) EMBO Journal , vol.23 , Issue.4 , pp. 857-868
    • Dejardin, J.1    Cavalli, G.2
  • 31
    • 0036337188 scopus 로고    scopus 로고
    • Zeste maintains repression of Ubx transgenes: Support for a new model of Polycomb repression
    • Zeste maintains repression of Ubx transgenes: support for a new model of Polycomb repression. Hur MW, Laney JD, Jeon SH, Ali J, Biggin MD, Development 2002 129 1339 1343 11880343 (Pubitemid 34874155)
    • (2002) Development , vol.129 , Issue.6 , pp. 1339-1343
    • Hur, M.-W.1    Laney, J.D.2    Jeon, S.-H.3    Ali, J.4    Biggin, M.D.5
  • 32
    • 0033538578 scopus 로고    scopus 로고
    • Stabilization of chromatin structure by PRC1, a polycomb complex
    • DOI 10.1016/S0092-8674(00)80604-2
    • Stabilization of chromatin structure by PRC1, a Polycomb complex. Shao Z, Raible F, Mollaaghababa R, Guyon JR, Wu CT, Bender W, Kingston RE, Cell 1999 98 37 46 10.1016/S0092-8674(00)80604-2 10412979 (Pubitemid 29331194)
    • (1999) Cell , vol.98 , Issue.1 , pp. 37-46
    • Shao, Z.1    Raible, F.2    Mollaaghababa, R.3    Guyon, J.R.4    Wu, C.-T.5    Bender, W.6    Kingston, R.E.7
  • 33
    • 33745151459 scopus 로고    scopus 로고
    • A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities
    • 10.1101/gad.377406 16618800
    • A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities. Klymenko T, Papp B, Fischle W, Köcher T, Schelder M, Fritsch C, Wild B, Wilm M, Müller J, Genes Dev 2006 20 1110 1122 10.1101/gad.377406 16618800
    • (2006) Genes Dev , vol.20 , pp. 1110-1122
    • Klymenko, T.1    Papp, B.2    Fischle, W.3    Köcher, T.4    Schelder, M.5    Fritsch, C.6    Wild, B.7    Wilm, M.8    Müller, J.9
  • 34
    • 0024973729 scopus 로고
    • Role of transcriptional interference in the Drosophila melanogaster Adh promoter switch
    • 10.1038/337279a0 2492088
    • Role of transcriptional interference in the Drosophila melanogaster Adh promoter switch. Corbin V, Maniatis T, Nature 1989 337 279 282 10.1038/337279a0 2492088
    • (1989) Nature , vol.337 , pp. 279-282
    • Corbin, V.1    Maniatis, T.2
  • 35
    • 53149130940 scopus 로고    scopus 로고
    • The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription
    • 10.1016/j.molcel.2008.07.023 18851839
    • The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription. Lefevre P, Witham J, Lacroix CE, Cockerill PN, Bonifer C, Mol Cell 2008 32 129 139 10.1016/j.molcel.2008.07.023 18851839
    • (2008) Mol Cell , vol.32 , pp. 129-139
    • Lefevre, P.1    Witham, J.2    Lacroix, C.E.3    Cockerill, P.N.4    Bonifer, C.5
  • 36
    • 80054684399 scopus 로고    scopus 로고
    • Long non-coding RNA modifies chromatin: Epigenetic silencing by long non-coding RNAs
    • 10.1002/bies.201100084 21915889
    • Long non-coding RNA modifies chromatin: epigenetic silencing by long non-coding RNAs. Saxena A, Carninci P, Bioessays 2011 33 830 839 10.1002/bies.201100084 21915889
    • (2011) Bioessays , vol.33 , pp. 830-839
    • Saxena, A.1    Carninci, P.2
  • 37
    • 77953096072 scopus 로고    scopus 로고
    • Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by Polycomb CBX7 in transcriptional silencing of INK4a
    • 10.1016/j.molcel.2010.03.021 20541999
    • Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by Polycomb CBX7 in transcriptional silencing of INK4a. Yap KL, Li S, Muñoz-Cabello AM, Raguz S, Zeng L, Mujtaba S, Gil J, Walsh MJ, Zhou MM, Mol Cell 2010 38 662 674 10.1016/j.molcel.2010.03.021 20541999
    • (2010) Mol Cell , vol.38 , pp. 662-674
    • Yap, K.L.1    Li, S.2    Muñoz-Cabello, A.M.3    Raguz, S.4    Zeng, L.5    Mujtaba, S.6    Gil, J.7    Walsh, M.J.8    Zhou, M.M.9
  • 40
    • 84860469898 scopus 로고    scopus 로고
    • Transcriptional enhancers in protein-coding exons of vertebrate developmental genes
    • 10.1371/journal.pone.0035202 22567096
    • Transcriptional enhancers in protein-coding exons of vertebrate developmental genes. Ritter DI, Dong Z, Guo S, Chuang JH, PLoS One 2012 7 35202 10.1371/journal.pone.0035202 22567096
    • (2012) PLoS One , vol.7 , pp. 535202
    • Ritter, D.I.1    Dong, Z.2    Guo, S.3    Chuang, J.H.4
  • 41
    • 0021473294 scopus 로고
    • Analysis of P transposable element functions in Drosophila
    • 10.1016/0092-8674(84)90534-8 6088058
    • Analysis of P transposable element functions in Drosophila. Karess RE, Rubin GM, Cell 1984 38 135 146 10.1016/0092-8674(84)90534-8 6088058
    • (1984) Cell , vol.38 , pp. 135-146
    • Karess, R.E.1    Rubin, G.M.2
  • 42
    • 0019945644 scopus 로고
    • Genetic transformation of Drosophila with transposable element vectors
    • Genetic transformation of Drosophila with transposable element vectors. Rubin GM, Spradling AC, Science 1982 218 348 353 10.1126/science.6289436 6289436 (Pubitemid 12037603)
    • (1982) Science , vol.218 , Issue.4570 , pp. 348-353
    • Rubin, G.M.1    Spradling, A.C.2
  • 43
    • 0019967916 scopus 로고
    • Transposition of cloned P elements into Drosophila germ line chromosomes
    • Transposition of cloned P elements into Drosophila germ line chromosomes. Spradling AC, Rubin GM, Science 1982 218 341 347 10.1126/science.6289435 6289435 (Pubitemid 12037602)
    • (1982) Science , vol.218 , Issue.4570 , pp. 341-347
    • Spradling, A.C.1    Rubin, G.M.2
  • 44
    • 0024378286 scopus 로고
    • The FLP recombinase of yeast catalyzes site-specific recombination in the Drosophila genome
    • DOI 10.1016/0092-8674(89)90033-0
    • The FLP recombinase of yeast catalyzes site-specific recombination in the Drosophila genome. Golic KG, Lindquist S, Cell 1989 59 499 509 10.1016/0092-8674(89)90033-0 2509077 (Pubitemid 19284463)
    • (1989) Cell , vol.59 , Issue.3 , pp. 499-509
    • Golic, K.G.1    Lindquist, S.2
  • 45
    • 0033650166 scopus 로고    scopus 로고
    • Application of Cre/loxP in Drosophila: Site-specific recombination and transgene co-placement
    • 10840736
    • Application of Cre/loxP in Drosophila: site-specific recombination and transgene co-placement. Siegal ML, Hartl DL, Methods Mol Biol 2000 136 487 495 10840736
    • (2000) Methods Mol Biol , vol.136 , pp. 487-495
    • Siegal, M.L.1    Hartl, D.L.2
  • 46
    • 34147217573 scopus 로고    scopus 로고
    • Study of the functional interaction between Mcp insulators from the Drosophila bithorax complex: Effects of insulator pairing on enhancer-promoter communication
    • DOI 10.1128/MCB.02203-06
    • Study of the functional interaction between Mcp insulators from the Drosophila bithorax complex: effects of insulator pairing on enhancer-promoter communication. Kyrchanova O, Toshchakov S, Parshikov A, Georgiev P, Mol Cell Biol 2007 27 3035 3043 10.1128/MCB.02203-06 17283051 (Pubitemid 46581316)
    • (2007) Molecular and Cellular Biology , vol.27 , Issue.8 , pp. 3035-3043
    • Kyrchanova, O.1    Toshchakov, S.2    Parshikov, A.3    Georgiev, P.4
  • 47
    • 0024260258 scopus 로고
    • Vectors for P-mediated transformation in Drosophila
    • 2850048
    • Vectors for P-mediated transformation in Drosophila. Pirrotta V, Biotechnology 1988 10 437 456 2850048
    • (1988) Biotechnology , vol.10 , pp. 437-456
    • Pirrotta, V.1
  • 50
    • 80051936662 scopus 로고    scopus 로고
    • Insulators form gene loops by interacting with promoters in Drosophila
    • 10.1242/dev.062836 21862564
    • Insulators form gene loops by interacting with promoters in Drosophila. Erokhin M, Davydova A, Kyrchanova O, Parshikov A, Georgiev P, Chetverina D, Development 2011 138 4097 4106 10.1242/dev.062836 21862564
    • (2011) Development , vol.138 , pp. 4097-4106
    • Erokhin, M.1    Davydova, A.2    Kyrchanova, O.3    Parshikov, A.4    Georgiev, P.5    Chetverina, D.6


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