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Volumn 512, Issue 1, 2014, Pages 96-100

Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase (Nature (2014) 512 (96-100) DOI: 10.1038/nature13417);Enhancer loops appear stable during development and are associated with paused polymerase

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE;

EID: 84905593782     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature18962     Document Type: Erratum
Times cited : (392)

References (56)
  • 1
    • 0036923833 scopus 로고    scopus 로고
    • Looping and interaction between hypersensitive sites in the active b-globin locus
    • Tolhuis, B., Palstra, R.-J., Splinter, E., Grosveld, F. & de Laat, W. Looping and interaction between hypersensitive sites in the active b-globin locus. Mol. Cell 10, 1453-1465 (2002).
    • (2002) Mol. Cell , vol.10 , pp. 1453-1465
    • Tolhuis, B.1    Palstra, R.-J.2    Splinter, E.3    Grosveld, F.4    De Laat, W.5
  • 2
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncoveredbychromosome conformation capture-on-chip(4C)
    • Simonis, M. et al. Nuclear organization of active and inactive chromatin domains uncoveredbychromosome conformation capture-on-chip(4C). NatureGenet. 38, 1348-1354 (2006).
    • (2006) NatureGenet. , vol.38 , pp. 1348-1354
    • Simonis, M.1
  • 3
    • 81855227640 scopus 로고    scopus 로고
    • A regulatory archipelago controls Hox genes transcription in digits
    • Montavon, T. et al. A regulatory archipelago controls Hox genes transcription in digits. Cell 147, 1132-1145 (2011).
    • (2011) Cell , vol.147 , pp. 1132-1145
    • Montavon, T.1
  • 4
    • 84886853624 scopus 로고    scopus 로고
    • Topology of mammalian developmental enhancers and their regulatory landscapes
    • de Laat, W. & Duboule, D. Topology of mammalian developmental enhancers and their regulatory landscapes. Nature 502, 499-506 (2013).
    • (2013) Nature , vol.502 , pp. 499-506
    • De Laat, W.1    Duboule, D.2
  • 5
    • 84865502890 scopus 로고    scopus 로고
    • 4C technology: Protocols and data analysis
    • Van de Werken, H. J. G. et al. 4C technology: protocols and data analysis. Methods Enzymol. 513, 89-112 (2012).
    • (2012) Methods Enzymol. , vol.513 , pp. 89-112
    • Van De Werken, H.J.G.1
  • 6
    • 84856239091 scopus 로고    scopus 로고
    • Tissue-specific analysis of chromatin state identifies temporal signatures ofenhancer activity during embryonic development
    • Bonn, S. et al. Tissue-specific analysis of chromatin state identifies temporal signatures ofenhancer activity during embryonic development. Nature Genet. 44, 148-156 (2012).
    • (2012) Nature Genet. , vol.44 , pp. 148-156
    • Bonn, S.1
  • 7
    • 84856704764 scopus 로고    scopus 로고
    • Atranscription factor collective defines cardiac cell fate and reflects lineage history
    • Junion, G. et al. Atranscription factor collective defines cardiac cell fate and reflects lineage history. Cell 148, 473-486 (2012).
    • (2012) Cell , vol.148 , pp. 473-486
    • Junion, G.1
  • 8
    • 70449132583 scopus 로고    scopus 로고
    • Combinatorial binding predicts spatio-temporal cis-regulatory activity
    • Zinzen, R. P., Girardot, C., Gagneur, J., Braun, M. & Furlong, E. E. M. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature 462, 65-70 (2009).
    • (2009) Nature , vol.462 , pp. 65-70
    • Zinzen, R.P.1    Girardot, C.2    Gagneur, J.3    Braun, M.4    Furlong, E.E.M.5
  • 9
    • 79953043801 scopus 로고    scopus 로고
    • The developmental transcriptome of Drosophila melanogaster
    • Graveley, B. R. et al. The developmental transcriptome of Drosophila melanogaster. Nature 471, 473-479 (2011).
    • (2011) Nature , vol.471 , pp. 473-479
    • Graveley, B.R.1
  • 10
    • 0035030742 scopus 로고    scopus 로고
    • Direct regulation of the muscle-identity gene apterous by a Hox protein in the somatic mesoderm
    • Capovilla, M., Kambris, Z. & Botas, J. Direct regulation of the muscle-identity gene apterous by a Hox protein in the somatic mesoderm. Development 128, 1221-1230 (2001).
    • (2001) Development , vol.128 , pp. 1221-1230
    • Capovilla, M.1    Kambris, Z.2    Botas, J.3
  • 11
    • 79953750893 scopus 로고    scopus 로고
    • Interactions among Polycomb domains are guided by chromosome architecture
    • Tolhuis, B. et al. Interactions among Polycomb domains are guided by chromosome architecture. PLoS Genet. 7, e1001343 (2011).
    • (2011) PLoS Genet. , vol.7
    • Tolhuis, B.1
  • 12
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • Sanyal, A., Lajoie, B. R., Jain, G. & Dekker, J. The long-range interaction landscape of gene promoters. Nature 489, 109-113 (2012).
    • (2012) Nature , vol.489 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 13
    • 84887620842 scopus 로고    scopus 로고
    • Ahigh-resolution map ofthe three-dimensional chromatin interactome in human cells
    • Jin, F. et al. Ahigh-resolution map ofthe three-dimensional chromatin interactome in human cells. Nature 503, 290-294 (2013).
    • (2013) Nature , vol.503 , pp. 290-294
    • Jin, F.1
  • 14
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon, J. R. et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376-380 (2012).
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1
  • 15
    • 84856747483 scopus 로고    scopus 로고
    • Three-dimensional folding and functional organization principles of the Drosophila genome
    • Sexton, T. et al. Three-dimensional folding and functional organization principles of the Drosophila genome. Cell 148, 458-472 (2012).
    • (2012) Cell , vol.148 , pp. 458-472
    • Sexton, T.1
  • 16
    • 84878860751 scopus 로고    scopus 로고
    • Architectural protein subclasses shape3Dorganization of genomes during lineage commitment
    • Phillips-Cremins, J. E. et al. Architectural protein subclasses shape3Dorganization of genomes during lineage commitment. Cell 153, 1281-1295 (2013).
    • (2013) Cell , vol.153 , pp. 1281-1295
    • Phillips-Cremins, J.E.1
  • 17
    • 76749089660 scopus 로고    scopus 로고
    • A comprehensive map of insulator elements for the Drosophila genome
    • Nègre, N. et al. A comprehensive map of insulator elements for the Drosophila genome. PLoS Genet. 6, e1000814 (2010).
    • (2010) PLoS Genet. , vol.6
    • Nègre, N.1
  • 18
    • 73349090560 scopus 로고    scopus 로고
    • Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
    • Schoenfelder, S. et al. Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells. Nature Genet. 42, 53-61 (2010).
    • (2010) Nature Genet. , vol.42 , pp. 53-61
    • Schoenfelder, S.1
  • 19
    • 84886777912 scopus 로고    scopus 로고
    • Chromosomalcontactpermitstranscriptionbetweencoregulatedgenes
    • Fanucchi, S., Shibayama, Y., Burd, S., Weinberg, M. S. & Mhlanga, M. M. Chromosomalcontactpermitstranscriptionbetweencoregulatedgenes. Cell155, 606-620 (2013).
    • (2013) Cell , vol.155 , pp. 606-620
    • Fanucchi, S.1    Shibayama, Y.2    Burd, S.3    Weinberg, M.S.4    Mhlanga, M.M.5
  • 20
    • 84890432056 scopus 로고    scopus 로고
    • Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations
    • Zhang, Y. et al. Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations. Nature 504, 306-310 (2013).
    • (2013) Nature , vol.504 , pp. 306-310
    • Zhang, Y.1
  • 21
    • 33746472337 scopus 로고    scopus 로고
    • Probing long-distance regulatory interactions in the Drosophila melanogaster bithorax complex using Dam identification
    • Cléard, F., Moshkin, Y., Karch, F. & Maeda, R. K. Probing long-distance regulatory interactions in the Drosophila melanogaster bithorax complex using Dam identification. Nature Genet. 38, 931-935 (2006).
    • (2006) Nature Genet. , vol.38 , pp. 931-935
    • Cléard, F.1    Moshkin, Y.2    Karch, F.3    Maeda, R.K.4
  • 22
    • 34848825691 scopus 로고    scopus 로고
    • Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex
    • Lanzuolo, C., Roure, V., Dekker, J., Bantignies, F. & Orlando, V. Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex. Nature Cell Biol. 9, 1167-1174 (2007).
    • (2007) Nature Cell Biol. , vol.9 , pp. 1167-1174
    • Lanzuolo, C.1    Roure, V.2    Dekker, J.3    Bantignies, F.4    Orlando, V.5
  • 23
    • 33644779527 scopus 로고    scopus 로고
    • Scylla and charybde, homologues of the human apoptotic gene RTP801, are required for head involution in Drosophila
    • Scuderi, A., Simin, K., Kazuko, S. G., Metherall, J. E. & Letsou, A. scylla and charybde, homologues of the human apoptotic gene RTP801, are required for head involution in Drosophila. Dev. Biol. 291, 110-122 (2006).
    • (2006) Dev. Biol. , vol.291 , pp. 110-122
    • Scuderi, A.1    Simin, K.2    Kazuko, S.G.3    Metherall, J.E.4    Letsou, A.5
  • 24
    • 38849112675 scopus 로고    scopus 로고
    • Genomic regulatory blocks underlie extensive microsynteny conservation in insects
    • Engström, P. G., Sui, S. J. H., Drivenes, Ø., Becker, T. S. & Lenhard, B. Genomic regulatory blocks underlie extensive microsynteny conservation in insects. Genome Res. 17, 1898-1908 (2007).
    • (2007) Genome Res. , vol.17 , pp. 1898-1908
    • Engström, P.G.1    Sui, S.J.H.2    Drivenes Ø3    Becker, T.S.4    Lenhard, B.5
  • 25
    • 84861964135 scopus 로고    scopus 로고
    • Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor
    • Deng, W. et al. Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor. Cell 149, 1233-1244 (2012).
    • (2012) Cell , vol.149 , pp. 1233-1244
    • Deng, W.1
  • 26
    • 0027470184 scopus 로고
    • Silencers in abdominal-B, a homeotic Drosophila gene
    • Busturia, A. & Bienz, M. Silencers in abdominal-B, a homeotic Drosophila gene. EMBO J. 12, 1415-1425 (1993).
    • (1993) EMBO J. , vol.12 , pp. 1415-1425
    • Busturia, A.1    Bienz, M.2
  • 27
    • 0032784608 scopus 로고    scopus 로고
    • Characterization of the transvection mediating region of the abdominal-B locus in Drosophila
    • Zhou, J., Ashe, H., Burks, C. & Levine, M. Characterization of the transvection mediating region of the abdominal-B locus in Drosophila. Development 126, 3057-3065 (1999).
    • (1999) Development , vol.126 , pp. 3057-3065
    • Zhou, J.1    Ashe, H.2    Burks, C.3    Levine, M.4
  • 28
    • 84877975516 scopus 로고    scopus 로고
    • Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription
    • Saunders, A., Core, L. J., Sutcliffe, C., Lis, J. T. & Ashe, H. L. Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription. Genes Dev. 27, 1146-1158 (2013).
    • (2013) Genes Dev. , vol.27 , pp. 1146-1158
    • Saunders, A.1    Core, L.J.2    Sutcliffe, C.3    Lis, J.T.4    Ashe, H.L.5
  • 29
    • 79955760882 scopus 로고    scopus 로고
    • Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
    • Thomas, S. et al. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol. 12, R43 (2011).
    • (2011) Genome Biol. , vol.12
    • Thomas, S.1
  • 30
    • 67649647759 scopus 로고    scopus 로고
    • Stalled Hox promoters as chromosomal boundaries
    • Chopra, V. S., Cande, J., Hong, J.-W. & Levine, M. Stalled Hox promoters as chromosomal boundaries. Genes Dev. 23, 1505-1509 (2009).
    • (2009) Genes Dev. , vol.23 , pp. 1505-1509
    • Chopra, V.S.1    Cande, J.2    Hong, J.-W.3    Levine, M.4
  • 31
    • 80054110441 scopus 로고    scopus 로고
    • ThedynamicarchitectureofHox gene clusters
    • Noordermeer, D. et al. ThedynamicarchitectureofHox gene clusters. Science 334, 222-225 (2011).
    • (2011) Science , vol.334 , pp. 222-225
    • Noordermeer, D.1
  • 32
    • 84856239091 scopus 로고    scopus 로고
    • Tissue-specific analysis of chromatin state identifies temporal signaturesof enhancer activity during embryonic development
    • Bonn, S. et al. Tissue-specific analysis of chromatin state identifies temporal signaturesof enhancer activity during embryonic development. Nature Genet. 44, 148-156 (2012).
    • (2012) Nature Genet. , vol.44 , pp. 148-156
    • Bonn, S.1
  • 34
    • 84872112391 scopus 로고    scopus 로고
    • Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP
    • Bonn, S. et al. Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP. Nature Protocols 7, 978-994 (2012).
    • (2012) Nature Protocols , vol.7 , pp. 978-994
    • Bonn, S.1
  • 35
    • 84867003195 scopus 로고    scopus 로고
    • Robust 4C-seq data analysis to screen for regulatory DNA interactions
    • van de Werken, H. J. G. et al. Robust 4C-seq data analysis to screen for regulatory DNA interactions. Nature Methods 9, 969-972 (2012).
    • (2012) Nature Methods , vol.9 , pp. 969-972
    • Van De Werken, H.J.G.1
  • 36
    • 78651514974 scopus 로고    scopus 로고
    • Polycomb-dependent regulatorycontacts between distantHox loci in Drosophila
    • Bantignies, F. et al. Polycomb-dependent regulatorycontacts between distantHox loci in Drosophila. Cell 144, 214-226 (2011).
    • (2011) Cell , vol.144 , pp. 214-226
    • Bantignies, F.1
  • 37
    • 33845698104 scopus 로고    scopus 로고
    • Pacman A BAC transgenic platform for targeted insertion of large DNA fragments in D. Melanogaster
    • Venken, K. J. T., He, Y., Hoskins, R. A. & Bellen, H. J. P[acman]: a BAC transgenic platform for targeted insertion of large DNA fragments in D. melanogaster. Science 314, 1747-1751 (2006).
    • (2006) Science , vol.314 , pp. 1747-1751
    • Venken, K.J.T.1    He, Y.2    Hoskins, R.A.3    Bellen, H.J.4
  • 38
    • 0033782266 scopus 로고    scopus 로고
    • GFP and b-galactosidase transformation vectors for promoter/enhancer analysis in Drosophila
    • Barolo, S., Carver, L. A. & Posakony, J. W. GFP and b-galactosidase transformation vectors for promoter/enhancer analysis in Drosophila. Biotechniques 29, 726-732 (2000).
    • (2000) Biotechniques , vol.29 , pp. 726-732
    • Barolo, S.1    Carver, L.A.2    Posakony, J.W.3
  • 39
    • 0019945644 scopus 로고
    • Genetic transformation of Drosophila with transposable element vectors
    • Rubin, G. M. & Spradling, A. C. Genetic transformation of Drosophila with transposable element vectors. Science 218, 348-353 (1982).
    • (1982) Science , vol.218 , pp. 348-353
    • Rubin, G.M.1    Spradling, A.C.2
  • 40
    • 0035979735 scopus 로고    scopus 로고
    • Patterns of gene expression during Drosophila mesoderm development
    • Furlong, E. E., Andersen, E. C., Null, B., White, K. P. & Scott, M. P. Patterns of gene expression during Drosophila mesoderm development. Science 293, 1629-1633 (2001).
    • (2001) Science , vol.293 , pp. 1629-1633
    • Furlong, E.E.1    Andersen, E.C.2    Null, B.3    White, K.P.4    Scott, M.P.5
  • 41
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 57, 289-300 (1995).
    • (1995) J. R. Stat. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 42
    • 84856008906 scopus 로고    scopus 로고
    • Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
    • Ross-Innes, C. S. et al. Differential oestrogen receptor binding is associated with clinical outcome in breast cancer. Nature 481, 389-393 (2012).
    • (2012) Nature , vol.481 , pp. 389-393
    • Ross-Innes, C.S.1
  • 43
    • 84876556121 scopus 로고    scopus 로고
    • FlyBase: Improvements tothe bibliography
    • Marygold, S. J. et al. FlyBase: improvements tothe bibliography. Nucleic Acids Res. 41, D751-D757 (2013).
    • (2013) Nucleic Acids Res. , vol.41
    • Marygold, S.J.1
  • 44
    • 79958724665 scopus 로고    scopus 로고
    • RNAsequencingreveals two major classesofgene expression levels in metazoan cells
    • Hebenstreit, D. et al. RNAsequencingreveals two major classesofgene expression levels in metazoan cells. Mol. Syst. Biol. 7, 497 (2011).
    • (2011) Mol. Syst. Biol. , vol.7 , pp. 497
    • Hebenstreit, D.1
  • 45
    • 84872020892 scopus 로고    scopus 로고
    • Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state
    • Wilczynski, B., Liu, Y.-H., Yeo, Z. X. & Furlong, E. E. M. Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state. PLOS Comput. Biol. 8, e1002798 (2012).
    • (2012) PLOS Comput. Biol. , vol.8
    • Wilczynski, B.1    Liu, Y.-H.2    Yeo, Z.X.3    Furlong, E.E.M.4
  • 46
    • 78651335916 scopus 로고    scopus 로고
    • REDfly v3. 0: Toward a comprehensive database of transcriptional regulatory elements in Drosophila
    • Gallo, S. M. et al. REDfly v3. 0: toward a comprehensive database of transcriptional regulatory elements in Drosophila. Nucleic Acids Res. 39, D118-D123 (2011).
    • (2011) Nucleic Acids Res. , vol.39
    • Gallo, S.M.1
  • 47
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
    • (2010) Genome Biol. , vol.11
    • Anders, S.1    Huber, W.2
  • 48
    • 84881591218 scopus 로고    scopus 로고
    • Aglobal changeinRNA polymeraseIIpausing duringthe Drosophila midblastula transition
    • Chen, K. et al. Aglobal changeinRNA polymeraseIIpausing duringthe Drosophila midblastula transition. eLife 2, e00861 (2013).
    • (2013) ELife , vol.2
    • Chen, K.1
  • 49
    • 79953046943 scopus 로고    scopus 로고
    • A cis-regulatory map of the Drosophila genome
    • Nègre, N. et al. A cis-regulatory map of the Drosophila genome. Nature 471, 527-531 (2011).
    • (2011) Nature , vol.471 , pp. 527-531
    • Nègre, N.1
  • 50
    • 84859240753 scopus 로고    scopus 로고
    • ArchTEx: Accurate extraction and visualization of next-generation sequence data
    • Lai, W. K. M., Bard, J. E. & Buck, M. J. ArchTEx: accurate extraction and visualization of next-generation sequence data. Bioinformatics 28, 1021-1023 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1021-1023
    • Lai, W.K.M.1    Bard, J.E.2    Buck, M.J.3
  • 51
    • 12744263842 scopus 로고    scopus 로고
    • Computational identification of developmental enhancers: Conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
    • Berman, B. P. et al. Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. Genome Biol. 5, R61 (2004).
    • (2004) Genome Biol. , vol.5
    • Berman, B.P.1
  • 52
    • 0035923748 scopus 로고    scopus 로고
    • Short-and long-range repulsion by the Drosophila Unc5 netrin receptor
    • Keleman, K. & Dickson, B. J. Short-and long-range repulsion by the Drosophila Unc5 netrin receptor. Neuron 32, 605-617 (2001).
    • (2001) Neuron , vol.32 , pp. 605-617
    • Keleman, K.1    Dickson, B.J.2
  • 53
    • 78651245647 scopus 로고    scopus 로고
    • The transmembrane receptor Uncoordinated5 (Unc5) is essential for heart lumen formation in Drosophila melanogaster
    • Albrecht, S., Altenhein, B. & Paululat, A. The transmembrane receptor Uncoordinated5 (Unc5) is essential for heart lumen formation in Drosophila melanogaster. Dev. Biol. 350, 89-100 (2011).
    • (2011) Dev. Biol. , vol.350 , pp. 89-100
    • Albrecht, S.1    Altenhein, B.2    Paululat, A.3
  • 54
    • 84871682829 scopus 로고    scopus 로고
    • Poised RNA polymeraseIIchangesover developmental time and prepares genes for future expression
    • Gaertner, B. et al. Poised RNA polymeraseIIchangesover developmental time and prepares genes for future expression. Cell Rep. 2, 1670-1683 (2012).
    • (2012) Cell Rep. , vol.2 , pp. 1670-1683
    • Gaertner, B.1
  • 55
    • 38349127974 scopus 로고    scopus 로고
    • Global analysis of patterns of gene expression during Drosophila embryogenesis
    • Tomancak, P. et al. Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome Biol. 8, R145 (2007).
    • (2007) Genome Biol. , vol.8
    • Tomancak, P.1
  • 56
    • 41349094797 scopus 로고    scopus 로고
    • Transcription regulation through promoter-proximal pausing of RNA polymerase II
    • Core, L. J. & Lis, J. T. Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science 319, 1791-1792 (2008).
    • (2008) Science , vol.319 , pp. 1791-1792
    • Core, L.J.1    Lis, J.T.2


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