-
1
-
-
33645219388
-
Drosophila Paf1 modulates chromatin structure at actively transcribed genes
-
Adelman K, Wei W, Ardehali MB, Werner J, Zhu B, Reinberg D, Lis JT (2006) Drosophila Paf1 modulates chromatin structure at actively transcribed genes. Mol Cell Biol 26: 250-260
-
(2006)
Mol Cell Biol
, vol.26
, pp. 250-260
-
-
Adelman, K.1
Wei, W.2
Ardehali, M.B.3
Werner, J.4
Zhu, B.5
Reinberg, D.6
Lis, J.T.7
-
2
-
-
36049028058
-
New nomenclature for chromatin-modifying enzymes
-
DOI 10.1016/j.cell.2007.10.039, PII S0092867407013591
-
Allis CD, Berger SL, Cote J, Dent S, Jenuwein T, Kouzarides T, Pillus L, Reinberg D, Shi Y, Shiekhattar R, Shilatifard A, Workman J, Zhang Y (2007) New nomenclature for chromatin-modifying enzymes. Cell 131: 633-636 (Pubitemid 350089969)
-
(2007)
Cell
, vol.131
, Issue.4
, pp. 633-636
-
-
Allis, C.D.1
Berger, S.L.2
Cote, J.3
Dent, S.4
Jenuwien, T.5
Kouzarides, T.6
Pillus, L.7
Reinberg, D.8
Shi, Y.9
Shiekhattar, R.10
Shilatifard, A.11
Workman, J.12
Zhang, Y.13
-
3
-
-
67349153355
-
Spt6 enhances the elongation rate of RNA poly-merase II in vivo
-
Ardehali MB, Yao J, Adelman K, Fuda NJ, Petesch SJ, Webb WW, Lis JT (2009) Spt6 enhances the elongation rate of RNA poly-merase II in vivo. EMBO J 28: 1067-1077
-
(2009)
EMBO J
, vol.28
, pp. 1067-1077
-
-
Ardehali, M.B.1
Yao, J.2
Adelman, K.3
Fuda, N.J.4
Petesch, S.J.5
Webb, W.W.6
Lis, J.T.7
-
4
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K (2007) High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837 (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
5
-
-
0142123203
-
Transcription Factor and Polymerase Recruitment, Modification, and Movement on dhsp70 In Vivo in the Minutes following Heat Shock
-
DOI 10.1128/MCB.23.21.7628-7637.2003
-
Boehm AK, Saunders A, Werner J, Lis JT (2003) Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock. Mol Cell Biol 23: 7628-7637 (Pubitemid 37271461)
-
(2003)
Molecular and Cellular Biology
, vol.23
, Issue.21
, pp. 7628-7637
-
-
Boehm, A.K.1
Saunders, A.2
Werner, J.3
Lis, J.T.4
-
6
-
-
77953400995
-
Histone H2B C-terminal helix mediates trans-histone H3K4 methyl-ation independent of H2B ubiquitination
-
Chandrasekharan MB, Huang F, Chen YC, Sun ZW (2010) Histone H2B C-terminal helix mediates trans-histone H3K4 methyl-ation independent of H2B ubiquitination. Mol Cell Biol 30: 3216-3232
-
(2010)
Mol Cell Biol
, vol.30
, pp. 3216-3232
-
-
Chandrasekharan, M.B.1
Huang, F.2
Chen, Y.C.3
Sun, Z.W.4
-
7
-
-
37249015899
-
Transcribing RNA polymerase II is phosphorylated at CTD residue serine-7
-
DOI 10.1126/science.1145977
-
Chapman RD, Heidemann M, Albert TK, Mailhammer R, Flatley A, Meisterernst M, Kremmer E, Eick D (2007) Transcribing RNA polymerase II is phosphorylated at CTD residue serine-7. Science 318: 1780-1782 (Pubitemid 350274389)
-
(2007)
Science
, vol.318
, Issue.5857
, pp. 1780-1782
-
-
Chapman, R.D.1
Heidemann, M.2
Albert, T.K.3
Mailhammer, R.4
Flatley, A.5
Meisterernst, M.6
Kremmer, E.7
Eick, D.8
-
8
-
-
0029006551
-
The Drosophila trithorax protein binds to specific chromosomal sites and is co-localized with polycomb at many sites
-
Chinwalla V, Jane EP, Harte PJ (1995) The Drosophila trithorax protein binds to specific chromosomal sites and is co-localized with polycomb at many sites. EMBO J 14: 2056-2065
-
(1995)
EMBO J
, vol.14
, pp. 2056-2065
-
-
Chinwalla, V.1
Jane, E.P.2
Harte, P.J.3
-
9
-
-
41349094797
-
Transcription regulation through promoter-proximal pausing of RNA polymerase II
-
DOI 10.1126/science.1150843
-
Core LJ, Lis JT (2008) Transcription regulation through promoter-proximal pausing of RNA polymerase II. Science 319: 1791-1792 (Pubitemid 351451556)
-
(2008)
Science
, vol.319
, Issue.5871
, pp. 1791-1792
-
-
Core, L.J.1
Lis, J.T.2
-
10
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322: 1845-1848
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
11
-
-
77950501203
-
Mixed lineage leukemia: A structure-function perspective of the MLL1 protein
-
Cosgrove MS, Patel A (2010) Mixed lineage leukemia: a structure-function perspective of the MLL1 protein. FEBS J 277: 1832-1842
-
(2010)
FEBS J
, vol.277
, pp. 1832-1842
-
-
Cosgrove, M.S.1
Patel, A.2
-
12
-
-
78650860258
-
Functional antagonism between histone H3K4 demethylases in vivo
-
Di Stefano L, Walker JA, Burgio G, Corona DF, Mulligan P, Naar AM, Dyson NJ (2011) Functional antagonism between histone H3K4 demethylases in vivo. Genes Dev 25: 17-28
-
(2011)
Genes Dev
, vol.25
, pp. 17-28
-
-
Di Stefano, L.1
Walker, J.A.2
Burgio, G.3
Corona, D.F.4
Mulligan, P.5
Naar, A.M.6
Dyson, N.J.7
-
13
-
-
20444397430
-
Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF
-
DOI 10.1016/j.cell.2005.04.031, PII S0092867405004496
-
Dou Y, Milne TA, Tackett AJ, Smith ER, Fukuda A, Wysocka J, Allis CD, Chait BT, Hess JL, Roeder RG (2005) Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Cell 121: 873-885 (Pubitemid 40806419)
-
(2005)
Cell
, vol.121
, Issue.6
, pp. 873-885
-
-
Dou, Y.1
Milne, T.A.2
Tackett, A.J.3
Smith, E.R.4
Fukuda, A.5
Wysocka, J.6
Allis, C.D.7
Chait, B.T.8
Hess, J.L.9
Roeder, R.G.10
-
14
-
-
34247253752
-
The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase
-
DOI 10.1038/nsmb1217, PII NSMB1217
-
Eissenberg JC, Lee MG, Schneider J, Ilvarsonn A, Shiekhattar R, Shilatifard A (2007) The trithorax-group gene in Drosophila little imaginal discs encodes a trimethylated histone H3 Lys4 demethylase. Nat Struct Mol Biol 14: 344-346 (Pubitemid 46608342)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.4
, pp. 344-346
-
-
Eissenberg, J.C.1
Lee, M.G.2
Schneider, J.3
Ilvarsonn, A.4
Shiekhattar, R.5
Shilatifard, A.6
-
15
-
-
76949107741
-
Histone H3 lysine 4 (H3K4) methylation in development and differentiation
-
Eissenberg JC, Shilatifard A (2010) Histone H3 lysine 4 (H3K4) methylation in development and differentiation. Dev Biol 339: 240-249
-
(2010)
Dev Biol
, vol.339
, pp. 240-249
-
-
Eissenberg, J.C.1
Shilatifard, A.2
-
16
-
-
0035102477
-
MLL and CREB bind cooperatively to the nuclear coactivator CREB-binding protein
-
DOI 10.1128/MCB.21.7.2249-2258.2001
-
Ernst P, Wang J, Huang M, Goodman RH, Korsmeyer SJ (2001) MLL and CREB bind cooperatively to the nuclear coactivator CREB-binding protein. Mol Cell Biol 21 : 2249-2258 (Pubitemid 32222079)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.7
, pp. 2249-2258
-
-
Ernst, P.1
Wang, J.2
Huang, M.3
Goodman, R.H.4
Korsmeyer, S.J.5
-
17
-
-
0033786540
-
A screen for new trithorax group genes identified little imaginal discs, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2
-
Gildea JJ, Lopez R, Shearn A (2000) A screen for new trithorax group genes identified little imaginal discs, the Drosophila melanogaster homologue of human retinoblastoma binding protein 2. Genetics 156: 645-663
-
(2000)
Genetics
, vol.156
, pp. 645-663
-
-
Gildea, J.J.1
Lopez, R.2
Shearn, A.3
-
18
-
-
33644787084
-
Gene-specific requirement for P-TEFb activity and RNA polymerase II phosphorylation within the p53 transcriptional program
-
DOI 10.1101/gad.1398206
-
Gomes NP, Bjerke G, Llorente B, Szostek SA, Emerson BM, Espinosa JM (2006) Gene-specific requirement for P-TEFb activity and RNA polymerase II phosphorylation within the p53 transcrip-tional program. Genes Dev 20: 601-612 (Pubitemid 43345325)
-
(2006)
Genes and Development
, vol.20
, Issue.5
, pp. 601-612
-
-
Gomes, N.P.1
Bjerke, G.2
Llorente, B.3
Szostek, S.A.4
Emerson, B.M.5
Espinosa, J.M.6
-
19
-
-
31344434715
-
Host cell factor and an uncharacterized SANT domain protein are stable components of ATAC, a novel dAda2A/dGcn5-containing histone acetyltransferase complex in Drosophila
-
DOI 10.1128/MCB.26.3.871-882.2006
-
Guelman S, Suganuma T, Florens L, Swanson SK, Kiesecker CL, Kusch T, Anderson S, Yates III JR, Washburn MP, Abmayr SM, Workman JL (2006) Host cell factor and an uncharacterized SANT domain protein are stable components of ATAC, a novel dAda2A/dGcn5-containing histone acetyltransferase complex in Drosophila. Mol Cell Biol 26: 871-882 (Pubitemid 43146483)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.3
, pp. 871-882
-
-
Guelman, S.1
Suganuma, T.2
Florens, L.3
Swanson, S.K.4
Kiesecker, C.L.5
Kusch, T.6
Anderson, S.7
Yates III, J.R.8
Washburn, M.P.9
Abmayr, S.M.10
Workman, J.L.11
-
20
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
DOI 10.1016/j.cell.2007.05.042, PII S0092867407006812
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA (2007) A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130: 77-88 (Pubitemid 47031323)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
21
-
-
67650960676
-
Transcription in the absence of histone H3.3
-
Hodl M, Basler K (2009) Transcription in the absence of histone H3.3. Curr Biol 19: 1221-1226
-
(2009)
Curr Biol
, vol.19
, pp. 1221-1226
-
-
Hodl, M.1
Basler, K.2
-
22
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G (2009) H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41: 941-945
-
(2009)
Nat Genet
, vol.41
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
Peng, W.5
Zhao, K.6
Felsenfeld, G.7
-
23
-
-
65249105512
-
RAD6-mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells
-
Kim J, Guermah M, McGinty RK, Lee JS, Tang Z, Milne TA, Shilatifard A, Muir TW, Roeder RG (2009) RAD6-mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell 137: 459-471
-
(2009)
Cell
, vol.137
, pp. 459-471
-
-
Kim, J.1
Guermah, M.2
McGinty, R.K.3
Lee, J.S.4
Tang, Z.5
Milne, T.A.6
Shilatifard, A.7
Muir, T.W.8
Roeder, R.G.9
-
24
-
-
34548272156
-
CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo
-
DOI 10.1126/science.1145339
-
Konev AY, Tribus M, Park SY, Podhraski V, Lim CY, Emelyanov AV, Vershilova E, Pirrotta V, Kadonaga JT, Lusser A, Fyodorov DV (2007) CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo. Science 317: 1087-1090 (Pubitemid 47330193)
-
(2007)
Science
, vol.317
, Issue.5841
, pp. 1087-1090
-
-
Konev, A.Y.1
Tribus, M.2
Sung, Y.P.3
Podhraski, V.4
Chin, Y.L.5
Emelyanov, A.V.6
Vershilova, E.7
Pirrotta, V.8
Kadonaga, J.T.9
Lusser, A.10
Fyodorov, D.V.11
-
25
-
-
10844233155
-
Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions
-
DOI 10.1126/science.1103455
-
Kusch T, Florens L, Macdonald WH, Swanson SK, Glaser RL, Yates III JR, Abmayr SM, Washburn MP, Workman JL (2004) Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions. Science 306: 2084-2087 (Pubitemid 40007658)
-
(2004)
Science
, vol.306
, Issue.5704
, pp. 2084-2087
-
-
Kusch, T.1
Florens, L.2
MacDonald, W.H.3
Swanson, S.K.4
Glaser, R.L.5
Yates III, J.R.6
Abmayr, S.M.7
Washburn, M.P.8
Workman, J.L.9
-
26
-
-
0037405113
-
Two Drosophila Ada2 homologues function in different multiprotein complexes
-
DOI 10.1128/MCB.23.9.3305-3319.2003
-
Kusch T, Guelman S, Abmayr SM, Workman JL (2003) Two Drosophila Ada2 homologues function in different multiprotein complexes. Mol Cell Biol 23: 3305-3319 (Pubitemid 36459242)
-
(2003)
Molecular and Cellular Biology
, vol.23
, Issue.9
, pp. 3305-3319
-
-
Kusch, T.1
Guelman, S.2
Abmayr, S.M.3
Workman, J.L.4
-
27
-
-
0027984509
-
The Drosophila trithorax gene encodes a chromosomal protein and directly regulates the region-specific homeotic gene fork head
-
Kuzin B, Tillib S, Sedkov Y, Mizrokhi L, Mazo A (1994) The Drosophila trithorax gene encodes a chromosomal protein and directly regulates the region-specific homeotic gene fork head. Genes Dev 8: 2478-2490 (Pubitemid 24323825)
-
(1994)
Genes and Development
, vol.8
, Issue.20
, pp. 2478-2490
-
-
Kuzin, B.1
Tillib, S.2
Sedkov, Y.3
Mizrokhi, L.4
Mazo, A.5
-
28
-
-
29244438472
-
4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex
-
DOI 10.1074/jbc.M508312200
-
Lee JH, Skalnik DG (2005) CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex. J Biol Chem 280: 41725-41731 (Pubitemid 41832235)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.50
, pp. 41725-41731
-
-
Lee, J.-H.1
Skalnik, D.G.2
-
29
-
-
34250352746
-
4 methyltransferase complex
-
DOI 10.1074/jbc.M609809200
-
Lee JH, Tate CM, You JS, Skalnik DG (2007a) Identification and characterization of the human Set1B histone H3-Lys4 methyl-transferase complex. J Biol Chem 282: 13419-13428 (Pubitemid 47100496)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.18
, pp. 13419-13428
-
-
Lee, J.-H.1
Tate, C.M.2
You, J.-S.3
Skalnik, D.G.4
-
30
-
-
34247260388
-
The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase
-
DOI 10.1038/nsmb1216, PII NSMB1216
-
Lee N, Zhang J, Klose RJ, Erdjument-Bromage H, Tempst P, Jones RS, Zhang Y (2007b) The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase. Nat Struct Mol Biol 14: 341-343 (Pubitemid 46608341)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.4
, pp. 341-343
-
-
Lee, N.1
Zhang, J.2
Klose, R.J.3
Erdjument-Bromage, H.4
Tempst, P.5
Jones, R.S.6
Zhang, Y.7
-
31
-
-
33750328340
-
The Yng1p plant homeodomain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3
-
DOI 10.1128/MCB.00573-06
-
Martin DG, Baetz K, Shi X, Walter KL, MacDonald VE, Wlodarski MJ, Gozani O, Hieter P, Howe L (2006) The Yng1p plant homeo-domain finger is a methyl-histone binding module that recognizes lysine 4-methylated histone H3. Mol Cell Biol 26: 7871-7879 (Pubitemid 44630988)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.21
, pp. 7871-7879
-
-
Martin, D.G.E.1
Baetz, K.2
Shi, X.3
Walter, K.L.4
MacDonald, V.E.5
Wlodarski, M.J.6
Gozani, O.7
Hieter, P.8
Howe, L.9
-
32
-
-
0035818465
-
COMPASS: A complex of proteins associated with a trithorax-related SET domain protein
-
DOI 10.1073/pnas.231473398
-
Miller T, Krogan NJ, Dover J, Erdjument-Bromage H, Tempst P, Johnston M, Greenblatt JF, Shilatifard A (2001) COMPASS: a complex of proteins associated with a trithorax-related SET domain protein. Proc Natl Acad Sci USA 98: 12902-12907 (Pubitemid 33051292)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.23
, pp. 12902-12907
-
-
Miller, T.1
Krogan, N.J.2
Dover, J.3
Erdjument-Bromage, H.4
Tempst, P.5
Johnston, M.6
Greenblatt, J.F.7
Shilatifard, A.8
-
33
-
-
77951907796
-
Characterising the binding specificities of the subunits associated with the KMT2/Set1 histone lysine methyltransferase
-
Murton BL, Chin WL, Ponting CP, Itzhaki LS (2010) Characterising the binding specificities of the subunits associated with the KMT2/Set1 histone lysine methyltransferase. J Mol Biol 398: 481-488
-
(2010)
J Mol Biol
, vol.398
, pp. 481-488
-
-
Murton, B.L.1
Chin, W.L.2
Ponting, C.P.3
Itzhaki, L.S.4
-
34
-
-
36549061004
-
RNA polymerase is poised for activation across the genome
-
DOI 10.1038/ng.2007.21, PII NG200721
-
Muse GW, Gilchrist DA, Nechaev S, Shah R, Parker JS, Grissom SF, Zeitlinger J, Adelman K (2007) RNA polymerase is poised for activation across the genome. Nat Genet 39: 1507-1511 (Pubitemid 350191341)
-
(2007)
Nature Genetics
, vol.39
, Issue.12
, pp. 1507-1511
-
-
Muse, G.W.1
Gilchrist, D.A.2
Nechaev, S.3
Shah, R.4
Parker, J.S.5
Grissom, S.F.6
Zeitlinger, J.7
Adelman, K.8
-
35
-
-
0037039309
-
A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3
-
DOI 10.1073/pnas.221596698
-
Nagy PL, Griesenbeck J, Kornberg RD, Cleary ML (2002) A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3. Proc Natl Acad Sci USA 99: 90-94 (Pubitemid 34060321)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.1
, pp. 90-94
-
-
Nagy, P.L.1
Griesenbec, J.2
Kornberg, R.D.3
Cleary, M.L.4
-
36
-
-
79959394424
-
Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing
-
(advance online publication, 9 February 2011)
-
Perez-Lluch S, Blanco E, Carbonell A, Raha D, Snyder M, Serras F, Corominas M (2011) Genome-wide chromatin occupancy analysis reveals a role for ASH2 in transcriptional pausing. Nucleic Acids Res (advance online publication, 9 February 2011)
-
(2011)
Nucleic Acids Res
-
-
Perez-Lluch, S.1
Blanco, E.2
Carbonell, A.3
Raha, D.4
Snyder, M.5
Serras, F.6
Corominas, M.7
-
37
-
-
0035834382
-
Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene
-
DOI 10.1126/science.1065683
-
Petruk S, Sedkov Y, Smith S, Tillib S, Kraevski V, Nakamura T, Canaani E, Croce CM, Mazo A (2001) Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene. Science 294: 1331-1334 (Pubitemid 33063097)
-
(2001)
Science
, vol.294
, Issue.5545
, pp. 1331-1334
-
-
Petruk, S.1
Sedkov, Y.2
Smith, S.3
Tillib, S.4
Kraevski, V.5
Nakamura, T.6
Canaani, E.7
Croce, C.M.8
Mazo, A.9
-
38
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
DOI 10.1016/j.cell.2005.06.026, PII S0092867405006458
-
Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI, Bell GW, Walker K, Rolfe PA, Herbolsheimer E, Zeitlinger J, Lewitter F, Gifford DK, Young RA (2005) Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122: 517-527 (Pubitemid 41191151)
-
(2005)
Cell
, vol.122
, Issue.4
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Tong, I.L.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
Zeitlinger, J.11
Lewitter, F.12
Gifford, D.K.13
Young, R.A.14
-
39
-
-
0037126594
-
The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4
-
DOI 10.1093/emboj/20.24.7137
-
Roguev A, Schaft D, Shevchenko A, Pijnappel WW, Wilm M, Aasland R, Stewart AF (2001) The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4. EMBO J 20: 7137-7148 (Pubitemid 34062305)
-
(2001)
EMBO Journal
, vol.20
, Issue.24
, pp. 7137-7148
-
-
Roguev, A.1
Schaft, D.2
Shevchenko, A.3
Pijnappel, W.W.M.P.4
Wilm, M.5
Aasland, R.6
Stewart, A.F.7
-
41
-
-
34147162969
-
Heterochromatin Formation in Drosophila Is Initiated through Active Removal of H3K4 Methylation by the LSD1 Homolog SU(VAR)3-3
-
DOI 10.1016/j.molcel.2007.02.025, PII S1097276507001426
-
Rudolph T, Yonezawa M, Lein S, Heidrich K, Kubicek S, Schafer C, Phalke S, Walther M, Schmidt A, Jenuwein T, Reuter G (2007) Heterochromatin formation in Drosophila is initiated through active removal of H3K4 methylation by the LSD1 homolog SU(VAR)3-3. Mol Cell 26: 103-115 (Pubitemid 46566423)
-
(2007)
Molecular Cell
, vol.26
, Issue.1
, pp. 103-115
-
-
Rudolph, T.1
Yonezawa, M.2
Lein, S.3
Heidrich, K.4
Kubicek, S.5
Schafer, C.6
Phalke, S.7
Walther, M.8
Schmidt, A.9
Jenuwein, T.10
Reuter, G.11
-
42
-
-
0345708105
-
Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin
-
DOI 10.1016/S1097-2765(03)00438-6
-
Santos-Rosa H, Schneider R, Bernstein BE, Karabetsou N, Morillon A, Weise C, Schreiber SL, Mellor J, Kouzarides T (2003) Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin. Mol Cell 12: 1325-1332 (Pubitemid 37487939)
-
(2003)
Molecular Cell
, vol.12
, Issue.5
, pp. 1325-1332
-
-
Santos-Rosa, H.1
Schneider, R.2
Bernstein, B.E.3
Karabetsou, N.4
Morillon, A.5
Weise, C.6
Schreiber, S.L.7
Mellor, J.8
Kouzarides, T.9
-
44
-
-
58849088872
-
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos
-
Schuettengruber B, Ganapathi M, Leblanc B, Portoso M, Jaschek R, Tolhuis B, van Lohuizen M, Tanay A, Cavalli G (2009) Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos. PLoS Biol 7: e13
-
(2009)
PLoS Biol
, vol.7
-
-
Schuettengruber, B.1
Ganapathi, M.2
Leblanc, B.3
Portoso, M.4
Jaschek, R.5
Tolhuis, B.6
Van Lohuizen, M.7
Tanay, A.8
Cavalli, G.9
-
45
-
-
17044394787
-
Transcriptional activation triggers deposition and removal of the histone variant H3.3
-
Schwartz BE, Ahmad K (2005) Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes Dev 19: 804-814
-
(2005)
Genes Dev
, vol.19
, pp. 804-814
-
-
Schwartz, B.E.1
Ahmad, K.2
-
46
-
-
76749164914
-
Alternative epigenetic chromatin states of polycomb target genes
-
Schwartz YB, Kahn TG, Stenberg P, Ohno K, Bourgon R, Pirrotta V (2010) Alternative epigenetic chromatin states of polycomb target genes. PLoS Genet 6: e1000805
-
(2010)
PLoS Genet
, vol.6
-
-
Schwartz, Y.B.1
Kahn, T.G.2
Stenberg, P.3
Ohno, K.4
Bourgon, R.5
Pirrotta, V.6
-
47
-
-
33947152396
-
The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth
-
DOI 10.1101/gad.1523007
-
Secombe J, Li L, Carlos L, Eisenman RN (2007) The Trithorax group protein Lid is a trimethyl histone H3K4 demethylase required for dMyc-induced cell growth. Genes Dev 21: 537-551 (Pubitemid 46409469)
-
(2007)
Genes and Development
, vol.21
, Issue.5
, pp. 537-551
-
-
Secombe, J.1
Li, L.2
Carlos, L.3
Eisenman, R.N.4
-
48
-
-
0033016615
-
Molecular genetic analysis of the Drosophila trithorax-related gene which encodes a novel SET domain protein
-
DOI 10.1016/S0925-4773(98)00246-9, PII S0925477398002469
-
Sedkov Y, Benes JJ, Berger JR, Riker KM, Tillib S, Jones RS, Mazo A (1999) Molecular genetic analysis of the Drosophila trithorax-related gene which encodes a novel SET domain protein. Mech Dev 82: 171-179 (Pubitemid 29243063)
-
(1999)
Mechanisms of Development
, vol.82
, Issue.1-2
, pp. 171-179
-
-
Sedkov, Y.1
Benes, J.J.2
Berger, J.R.3
Riker, K.M.4
Tillib, S.5
Jones, R.S.6
Mazo, A.7
-
49
-
-
0242665681
-
Methylation at lysine 4 of histone H3 in ecdysone-dependent development of Drosophila
-
DOI 10.1038/nature02080
-
Sedkov Y, Cho E, Petruk S, Cherbas L, Smith ST, Jones RS, Cherbas P, Canaani E, Jaynes JB, Mazo A (2003) Methylation at lysine 4 of histone H3 in ecdysone-dependent development of Drosophila. Nature 426: 78-83 (Pubitemid 37432544)
-
(2003)
Nature
, vol.426
, Issue.6962
, pp. 78-83
-
-
Sedkov, Y.1
Cho, E.2
Petruk, S.3
Cherbas, L.4
Smith, S.T.5
Jones, R.S.6
Cherbas, P.7
Canaani, E.8
Jaynes, J.B.9
Mazo, A.10
-
50
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, Flynn RA, Young RA, Sharp PA (2008) Divergent transcription from active promoters. Science 322: 1849-1851
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
51
-
-
33745868054
-
ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
-
DOI 10.1038/nature04835, PII NATURE04835
-
Shi X, Hong T, Walter KL, Ewalt M, Michishita E, Hung T, Carney D, Pena P, Lan F, Kaadige MR, Lacoste N, Cayrou C, Davrazou F, Saha A, Cairns BR, Ayer DE, Kutateladze TG, Shi Y, Cote J, Chua KF, et al. (2006) ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature 442: 96-99 (Pubitemid 44064216)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 96-99
-
-
Shi, X.1
Hong, T.2
Walter, K.L.3
Ewalt, M.4
Michishita, E.5
Hung, T.6
Carney, D.7
Pena, P.8
Lan, F.9
Kaadige, M.R.10
Lacoste, N.11
Cayrou, C.12
Davrazou, F.13
Saha, A.14
Cairns, B.R.15
Ayer, D.E.16
Kutateladze, T.G.17
Shi, Y.18
Cote, J.19
Chua, K.F.20
Gozani, O.21
more..
-
52
-
-
44649139771
-
Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation
-
Shilatifard A (2008) Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation. Curr Opin Cell Biol 20: 341-348
-
(2008)
Curr Opin Cell Biol
, vol.20
, pp. 341-348
-
-
Shilatifard, A.1
-
53
-
-
36249027156
-
Recognition of trimethyl-ated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing
-
DOI 10.1016/j.molcel.2007.11.010, PII S1097276507007447
-
Sims III RJ, Millhouse S, Chen CF, Lewis BA, Erdjument-Bromage H, Tempst P, Manley JL, Reinberg D (2007) Recognition of trimethyl-ated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol Cell 28: 665-676 (Pubitemid 350137805)
-
(2007)
Molecular Cell
, vol.28
, Issue.4
, pp. 665-676
-
-
Sims III, R.J.1
Millhouse, S.2
Chen, C.-F.3
Lewis, B.A.4
Erdjument-Bromage, H.5
Tempst, P.6
Manley, J.L.7
Reinberg, D.8
-
54
-
-
1642618325
-
Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex
-
DOI 10.1038/ncb1088
-
Smith ST, Petruk S, Sedkov Y, Cho E, Tillib S, Canaani E, Mazo A (2004) Modulation of heat shock gene expression by the TAC1 chromatin-modifying complex. Nat Cell Biol 6: 162-167 (Pubitemid 38425716)
-
(2004)
Nature Cell Biology
, vol.6
, Issue.2
, pp. 162-167
-
-
Smith, S.T.1
Petruk, S.2
Sedkov, Y.3
Cho, E.4
Tillib, S.5
Canaani, E.6
Mazo, A.7
-
55
-
-
55449092929
-
Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II
-
Srinivasan S, Dorighi KM, Tamkun JW (2008) Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II. PLoS Genet 4: e1000217
-
(2008)
PLoS Genet
, vol.4
-
-
Srinivasan, S.1
Dorighi, K.M.2
Tamkun, J.W.3
-
56
-
-
27444436367
-
Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase
-
DOI 10.1074/jbc.M504012200
-
Sun XJ, Wei J, Wu XY, Hu M, Wang L, Wang HH, Zhang QH, Chen SJ, Huang QH, Chen Z (2005) Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase. J Biol Chem 280: 35261-35271 (Pubitemid 41532714)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.42
, pp. 35261-35271
-
-
Sun, X.-J.1
Wei, J.2
Wu, X.-Y.3
Hu, M.4
Wang, L.5
Wang, H.-H.6
Zhang, Q.-H.7
Chen, S.-J.8
Huang, Q.-H.9
Chen, Z.10
-
57
-
-
67650091137
-
Regulation of H3K4 trimethyl-ation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: Implication for a Phe/Tyr switch by the catalytic domain of Set1
-
Takahashi YH, Lee JS, Swanson SK, Saraf A, Florens L, Washburn MP, Trievel RC, Shilatifard A (2009) Regulation of H3K4 trimethyl-ation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1. Mol Cell Biol 29: 3478-3486
-
(2009)
Mol Cell Biol
, vol.29
, pp. 3478-3486
-
-
Takahashi, Y.H.1
Lee, J.S.2
Swanson, S.K.3
Saraf, A.4
Florens, L.5
Washburn, M.P.6
Trievel, R.C.7
Shilatifard, A.8
-
58
-
-
77955291294
-
Structural basis for H3K4 trimethylation by yeast Set1/COMPASS
-
Takahashi YH, Shilatifard A (2009) Structural basis for H3K4 trimethylation by yeast Set1/COMPASS. Adv Enzyme Regul 50: 104-110
-
(2009)
Adv Enzyme Regul
, vol.50
, pp. 104-110
-
-
Takahashi, Y.H.1
Shilatifard, A.2
-
59
-
-
73649129275
-
CXXC finger protein 1 restricts the Setd1A histone H3K4 methyltransferase complex to euchro-matin
-
Tate CM, Lee JH, Skalnik DG (2010) CXXC finger protein 1 restricts the Setd1A histone H3K4 methyltransferase complex to euchro-matin. FEBS J 277: 210-223
-
(2010)
FEBS J
, vol.277
, pp. 210-223
-
-
Tate, C.M.1
Lee, J.H.2
Skalnik, D.G.3
-
60
-
-
33751527233
-
Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs
-
DOI 10.1016/j.molcel.2006.10.026, PII S1097276506007325
-
Taverna SD, Ilin S, Rogers RS, Tanny JC, Lavender H, Li H, Baker L, Boyle J, Blair LP, Chait BT, Patel DJ, Aitchison JD, Tackett AJ, Allis CD (2006) Yng1 PHD finger binding to H3 trimethylated at K4 promotes NuA3 HAT activity at K14 of H3 and transcription at a subset of targeted ORFs. Mol Cell 24: 785-796 (Pubitemid 44839214)
-
(2006)
Molecular Cell
, vol.24
, Issue.5
, pp. 785-796
-
-
Taverna, S.D.1
Ilin, S.2
Rogers, R.S.3
Tanny, J.C.4
Lavender, H.5
Li, H.6
Baker, L.7
Boyle, J.8
Blair, L.P.9
Chait, BrianT.10
Patel, D.J.11
Aitchison, J.D.12
Tackett, A.J.13
Allis, C.D.14
-
61
-
-
77951116072
-
CpG islands influence chromatin structure via the CpG-binding protein Cfp1
-
Thomson JP, Skene PJ, Selfridge J, Clouaire T, Guy J, Webb S, Kerr AR, Deaton A, Andrews R, James KD, Turner DJ, Illingworth R, Bird A (2010) CpG islands influence chromatin structure via the CpG-binding protein Cfp1. Nature 464: 1082-1086
-
(2010)
Nature
, vol.464
, pp. 1082-1086
-
-
Thomson, J.P.1
Skene, P.J.2
Selfridge, J.3
Clouaire, T.4
Guy, J.5
Webb, S.6
Kerr, A.R.7
Deaton, A.8
Andrews, R.9
James, K.D.10
Turner, D.J.11
Illingworth, R.12
Bird, A.13
-
62
-
-
70350031643
-
CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila polycomb silencing
-
Tie F, Banerjee R, Stratton CA, Prasad-Sinha J, Stepanik V, Zlobin A, Diaz MO, Scacheri PC, Harte PJ (2009) CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila polycomb silencing. Development 136: 3131-3141
-
(2009)
Development
, vol.136
, pp. 3131-3141
-
-
Tie, F.1
Banerjee, R.2
Stratton, C.A.3
Prasad-Sinha, J.4
Stepanik, V.5
Zlobin, A.6
Diaz, M.O.7
Scacheri, P.C.8
Harte, P.J.9
-
63
-
-
33746885160
-
Structural Characterization of Set1 RNA Recognition Motifs and their Role in Histone H3 Lysine 4 Methylation
-
DOI 10.1016/j.jmb.2006.04.050, PII S0022283606005286
-
Tresaugues L, Dehe PM, Guerois R, Rodriguez-Gil A, Varlet I, Salah P, Pamblanco M, Luciano P, Quevillon-Cheruel S, Sollier J, Leulliot N, Couprie J, Tordera V, Zinn-Justin S, Chavez S, van Tilbeurgh H, Geli V (2006) Structural characterization of Set1 RNA recognition motifs and their role in histone H3 lysine 4 methylation. J Mol Biol 359: 1170-1181 (Pubitemid 44192374)
-
(2006)
Journal of Molecular Biology
, vol.359
, Issue.5
, pp. 1170-1181
-
-
Tresaugues, L.1
Dehe, P.-M.2
Guerois, R.3
Rodriguez-Gil, A.4
Varlet, I.5
Salah, P.6
Pamblanco, M.7
Luciano, P.8
Quevillon-Cheruel, S.9
Sollier, J.10
Leulliot, N.11
Couprie, J.12
Tordera, V.13
Zinn-Justin, S.14
Chavez, S.15
Van Tilbeurgh, H.16
Geli, V.17
-
64
-
-
77956643239
-
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers
-
Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M (2010) Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell 142: 967-980
-
(2010)
Cell
, vol.142
, pp. 967-980
-
-
Vermeulen, M.1
Eberl, H.C.2
Matarese, F.3
Marks, H.4
Denissov, S.5
Butter, F.6
Lee, K.K.7
Olsen, J.V.8
Hyman, A.A.9
Stunnenberg, H.G.10
Mann, M.11
-
65
-
-
34848911602
-
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4
-
DOI 10.1016/j.cell.2007.08.016, PII S0092867407010793
-
Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Varier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT (2007) Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell 131: 58-69 (Pubitemid 47498531)
-
(2007)
Cell
, vol.131
, Issue.1
, pp. 58-69
-
-
Vermeulen, M.1
Mulder, K.W.2
Denissov, S.3
Pijnappel, W.W.M.P.4
Van Schaik, F.M.A.5
Varier, R.A.6
Baltissen, M.P.A.7
Stunnenberg, H.G.8
Mann, M.9
Timmers, H.Th.M.10
-
66
-
-
71949107301
-
Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II
-
Wang P, Lin C, Smith ER, Guo H, Sanderson BW, Wu M, Gogol M, Alexander T, Seidel C, Wiedemann LM, Ge K, Krumlauf R, Shilatifard A (2009) Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II. Mol Cell Biol 29: 6074-6085
-
(2009)
Mol Cell Biol
, vol.29
, pp. 6074-6085
-
-
Wang, P.1
Lin, C.2
Smith, E.R.3
Guo, H.4
Sanderson, B.W.5
Wu, M.6
Gogol, M.7
Alexander, T.8
Seidel, C.9
Wiedemann, L.M.10
Ge, K.11
Krumlauf, R.12
Shilatifard, A.13
-
67
-
-
0037382574
-
Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1
-
DOI 10.1101/gad.252103
-
Wysocka J, Myers MP, Laherty CD, Eisenman RN, Herr W (2003) Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1. Genes Dev 17: 896-911 (Pubitemid 36397377)
-
(2003)
Genes and Development
, vol.17
, Issue.7
, pp. 896-911
-
-
Wysocka, J.1
Myers, M.P.2
Laherty, C.D.3
Eisenman, R.N.4
Herr, W.5
-
68
-
-
37349099448
-
Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation
-
DOI 10.1016/j.molcel.2007.10.017, PII S1097276507006995
-
Yao J, Ardehali MB, Fecko CJ, Webb WW, Lis JT (2007) Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. Mol Cell 28: 978-990 (Pubitemid 350297022)
-
(2007)
Molecular Cell
, vol.28
, Issue.6
, pp. 978-990
-
-
Yao, J.1
Ardehali, M.B.2
Fecko, C.J.3
Webb, W.W.4
Lis, J.T.5
-
69
-
-
33748304273
-
Dynamics of heat shock factor association with native gene loci in living cells
-
DOI 10.1038/nature05025, PII NATURE05025
-
Yao J, Munson KM, Webb WW, Lis JT (2006) Dynamics of heat shock factor association with native gene loci in living cells. Nature 442: 1050-1053 (Pubitemid 44330263)
-
(2006)
Nature
, vol.442
, Issue.7106
, pp. 1050-1053
-
-
Yao, J.1
Munson, K.M.2
Webb, W.W.3
Lis, J.T.4
-
70
-
-
48049101923
-
Imaging transcription dynamics at endogenous genes in living Drosophila tissues
-
Yao J, Zobeck KL, Lis JT, Webb WW (2008) Imaging transcription dynamics at endogenous genes in living Drosophila tissues. Methods 45: 233-241
-
(2008)
Methods
, vol.45
, pp. 233-241
-
-
Yao, J.1
Zobeck, K.L.2
Lis, J.T.3
Webb, W.W.4
-
71
-
-
36049007800
-
A plasmid model system shows that Drosophila dosage compensation depends on the global acetylation of histone H4 at lysine 16 and is not affected by depletion of common transcription elongation chromatin marks
-
DOI 10.1128/MCB.00397-07
-
Yokoyama R, Pannuti A, Ling H, Smith ER, Lucchesi JC (2007) A plasmid model system shows that Drosophila dosage compensation depends on the global acetylation of histone H4 at lysine 16 and is not affected by depletion of common transcription elongation chromatin marks. Mol Cell Biol 27: 7865-7870 (Pubitemid 350086420)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.22
, pp. 7865-7870
-
-
Yokoyama, R.1
Pannuti, A.2
Ling, H.3
Smith, E.R.4
Lucchesi, J.C.5
|