-
1
-
-
0025866185
-
Conformational changes induced in the human immunodeficiency virus envelope glycoprotein by soluble CD4 binding
-
Sattentau QJ, Moore JP (1991) Conformational changes induced in the human immunodeficiency virus envelope glycoprotein by soluble CD4 binding. J Exp Med 174: 407-415
-
(1991)
J Exp Med
, vol.174
, pp. 407-415
-
-
Sattentau, Q.J.1
Moore, J.P.2
-
2
-
-
0033988632
-
Sequential CD4-coreceptor interactions in human immunodeficiency virus type 1 Env function: Soluble CD4 activates Env for coreceptor-dependent fusion and reveals blocking activities of antibodies against cryptic conserved epitopes on gp120
-
Salzwedel K, Smith ED, Dey B, Berger EA (2000) Sequential CD4-coreceptor interactions in human immunodeficiency virus type 1 Env function: soluble CD4 activates Env for coreceptor-dependent fusion and reveals blocking activities of antibodies against cryptic conserved epitopes on gp120. J Virol 74: 326-333
-
(2000)
J Virol
, vol.74
, pp. 326-333
-
-
Salzwedel, K.1
Smith, E.D.2
Dey, B.3
Berger, E.A.4
-
3
-
-
0027488547
-
Conformational changes induced in the envelope glycoproteins of the human and simian immunodeficiency viruses by soluble receptor binding
-
Sattentau QJ, Moore JP, Vignaux F, Traincard F, Poignard P (1993) Conformational changes induced in the envelope glycoproteins of the human and simian immunodeficiency viruses by soluble receptor binding. J Virol 67: 7383-7393
-
(1993)
J Virol
, vol.67
, pp. 7383-7393
-
-
Sattentau, Q.J.1
Moore, J.P.2
Vignaux, F.3
Traincard, F.4
Poignard, P.5
-
4
-
-
0034924823
-
Mechanisms of viral membrane fusion and its inhibition
-
Eckert DM, Kim PS (2001) Mechanisms of viral membrane fusion and its inhibition. Annu Rev Biochem 70: 777-810
-
(2001)
Annu Rev Biochem
, vol.70
, pp. 777-810
-
-
Eckert, D.M.1
Kim, P.S.2
-
5
-
-
15844419153
-
Identification of a major co-receptor for primary isolates of HIV-1
-
Deng H, Liu R, Ellmeier W, Choe S, Unutmaz D, et al. (1996) Identification of a major co-receptor for primary isolates of HIV-1. Nature 381: 661-666
-
(1996)
Nature
, vol.381
, pp. 661-666
-
-
Deng, H.1
Liu, R.2
Ellmeier, W.3
Choe, S.4
Unutmaz, D.5
-
6
-
-
0742325043
-
The CCR5 and CXCR4 coreceptors-central to understanding the transmission and pathogenesis of human immunodeficiency virus type 1 infection
-
Moore JP, Kitchen SG, Pugach P, Zack JA (2004) The CCR5 and CXCR4 coreceptors-central to understanding the transmission and pathogenesis of human immunodeficiency virus type 1 infection. AIDS Res Hum Retroviruses 20: 111-126
-
(2004)
AIDS Res Hum Retroviruses
, vol.20
, pp. 111-126
-
-
Moore, J.P.1
Kitchen, S.G.2
Pugach, P.3
Zack, J.A.4
-
7
-
-
84864416743
-
Selected amino acid changes in HIV-1 subtype-C gp41 are associated with specific gp120(V3) signatures in the regulation of co-receptor usage
-
Dimonte S, Babakir-Mina M, Mercurio F, Di Pinto D, Ceccherini-Silberstein F, et al. (2012) Selected amino acid changes in HIV-1 subtype-C gp41 are associated with specific gp120(V3) signatures in the regulation of co-receptor usage. Virus Res 168: 73-83
-
(2012)
Virus Res
, vol.168
, pp. 73-83
-
-
Dimonte, S.1
Babakir-Mina, M.2
Mercurio, F.3
Di Pinto, D.4
Ceccherini-Silberstein, F.5
-
8
-
-
55649084842
-
The V1-V3 region of a brain-derived HIV-1 envelope glycoprotein determines macrophage tropism, low CD4 dependence, increased fusogenicity and altered sensitivity to entry inhibitors
-
Rossi F, Querido B, Nimmagadda M, Cocklin S, Navas-Martin S, et al. (2008) The V1-V3 region of a brain-derived HIV-1 envelope glycoprotein determines macrophage tropism, low CD4 dependence, increased fusogenicity and altered sensitivity to entry inhibitors. Retrovirology 5: 89
-
(2008)
Retrovirology
, vol.5
, pp. 89
-
-
Rossi, F.1
Querido, B.2
Nimmagadda, M.3
Cocklin, S.4
Navas-Martin, S.5
-
9
-
-
0037183931
-
Temporal relationship between V1V2 variation, macrophage replication, and coreceptor adaptation during HIV-1 disease progression
-
Masciotra S, Owen SM, Rudolph D, Yang C, Wang B, et al. (2002) Temporal relationship between V1V2 variation, macrophage replication, and coreceptor adaptation during HIV-1 disease progression. AIDS 16: 1887-1898
-
(2002)
AIDS
, vol.16
, pp. 1887-1898
-
-
Masciotra, S.1
Owen, S.M.2
Rudolph, D.3
Yang, C.4
Wang, B.5
-
10
-
-
0030053670
-
Human immunodeficiency virus type 1 tropism for T-lymphoid cell lines: Role of the V3 loop and C4 envelope determinants
-
Carrillo A, Ratner L (1996) Human immunodeficiency virus type 1 tropism for T-lymphoid cell lines: role of the V3 loop and C4 envelope determinants. J Virol 70: 1301-1309
-
(1996)
J Virol
, vol.70
, pp. 1301-1309
-
-
Carrillo, A.1
Ratner, L.2
-
11
-
-
80054690690
-
Impact of mutations outside the V3 region on coreceptor tropism phenotypically assessed in patients infected with HIV-1 subtype B
-
Monno L, Saracino A, Scudeller L, Punzi G, Brindicci G, et al. (2011) Impact of mutations outside the V3 region on coreceptor tropism phenotypically assessed in patients infected with HIV-1 subtype B. Antimicrob Agents Chemother 55: 5078-5084
-
(2011)
Antimicrob Agents Chemother
, vol.55
, pp. 5078-5084
-
-
Monno, L.1
Saracino, A.2
Scudeller, L.3
Punzi, G.4
Brindicci, G.5
-
12
-
-
0037317611
-
Alternative conformations of HIV-1 V3 loops mimic beta hairpins in chemokines, suggesting a mechanism for coreceptor selectivity
-
Sharon M, Kessler N, Levy R, Zolla-Pazner S, Gorlach M, et al. (2003) Alternative conformations of HIV-1 V3 loops mimic beta hairpins in chemokines, suggesting a mechanism for coreceptor selectivity. Structure 11: 225-236
-
(2003)
Structure
, vol.11
, pp. 225-236
-
-
Sharon, M.1
Kessler, N.2
Levy, R.3
Zolla-Pazner, S.4
Gorlach, M.5
-
13
-
-
33846623260
-
Development and characterization of a novel single-cycle recombinant-virus assay to determine human immunodeficiency virus type 1 coreceptor tropism
-
Whitcomb JM, Huang W, Fransen S, Limoli K, Toma J, et al. (2007) Development and characterization of a novel single-cycle recombinant-virus assay to determine human immunodeficiency virus type 1 coreceptor tropism. Antimicrob Agents Chemother 51: 566-575
-
(2007)
Antimicrob Agents Chemother
, vol.51
, pp. 566-575
-
-
Whitcomb, J.M.1
Huang, W.2
Fransen, S.3
Limoli, K.4
Toma, J.5
-
14
-
-
0034749279
-
Determination of coreceptor usage of human immunodeficiency virus type 1 from patient plasma samples by using a recombinant phenotypic assay
-
Trouplin V, Salvatori F, Cappello F, Obry V, Brelot A, et al. (2001) Determination of coreceptor usage of human immunodeficiency virus type 1 from patient plasma samples by using a recombinant phenotypic assay. J Virol 75: 251-259
-
(2001)
J Virol
, vol.75
, pp. 251-259
-
-
Trouplin, V.1
Salvatori, F.2
Cappello, F.3
Obry, V.4
Brelot, A.5
-
16
-
-
80053386322
-
Concordance between HIV-1 genotypic coreceptor tropism predictions based on plasma RNA and proviral DNA
-
Verhofstede C, Brudney D, Reynaerts J, Vaira D, Fransen K, et al. (2011) Concordance between HIV-1 genotypic coreceptor tropism predictions based on plasma RNA and proviral DNA. HIV Med 12: 544-552
-
(2011)
HIV Med
, vol.12
, pp. 544-552
-
-
Verhofstede, C.1
Brudney, D.2
Reynaerts, J.3
Vaira, D.4
Fransen, K.5
-
17
-
-
0038637409
-
Predicting HIV-1 coreceptor usage with sequence analysis
-
Jensen MA, van 't Wout AB (2003) Predicting HIV-1 coreceptor usage with sequence analysis. AIDS Rev 5: 104-112
-
(2003)
AIDS Rev
, vol.5
, pp. 104-112
-
-
Jensen, M.A.1
Van 't Wout, A.B.2
-
18
-
-
65449152693
-
Robust supervised and unsupervised statistical learning for HIV type 1 coreceptor usage analysis
-
Prosperi MC, Fanti I, Ulivi G, Micarelli A, De Luca A, et al. (2009) Robust supervised and unsupervised statistical learning for HIV type 1 coreceptor usage analysis. AIDS Res Hum Retroviruses 25: 305-314
-
(2009)
AIDS Res Hum Retroviruses
, vol.25
, pp. 305-314
-
-
Prosperi, M.C.1
Fanti, I.2
Ulivi, G.3
Micarelli, A.4
De Luca, A.5
-
19
-
-
36148931769
-
Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
-
Sing T, Low AJ, Beerenwinkel N, Sander O, Cheung PK, et al. (2007) Predicting HIV coreceptor usage on the basis of genetic and clinical covariates. Antivir Ther 12: 1097-1106
-
(2007)
Antivir Ther
, vol.12
, pp. 1097-1106
-
-
Sing, T.1
Low, A.J.2
Beerenwinkel, N.3
Sander, O.4
Cheung, P.K.5
-
20
-
-
38349075744
-
Comparison of two genotypic algorithms to determine HIV-1 tropism
-
Soulie C, Derache A, Aime C, Marcelin AG, Carcelain G, et al. (2008) Comparison of two genotypic algorithms to determine HIV-1 tropism. HIV Med 9: 1-5
-
(2008)
HIV Med
, vol.9
, pp. 1-5
-
-
Soulie, C.1
Derache, A.2
Aime, C.3
Marcelin, A.G.4
Carcelain, G.5
-
21
-
-
10744231634
-
Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences
-
Jensen MA, Li FS, van 't Wout AB, Nickle DC, Shriner D, et al. (2003) Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences. J Virol 77: 13376-13388
-
(2003)
J Virol
, vol.77
, pp. 13376-13388
-
-
Jensen, M.A.1
Li, F.S.2
Van't Wout, A.B.3
Nickle, D.C.4
Shriner, D.5
-
22
-
-
0035078745
-
Characterization of intracellular reverse transcription complexes of human immunodeficiency virus type 1
-
Fassati A, Goff SP (2001) Characterization of intracellular reverse transcription complexes of human immunodeficiency virus type 1. J Virol 75: 3626-3635
-
(2001)
J Virol
, vol.75
, pp. 3626-3635
-
-
Fassati, A.1
Goff, S.P.2
-
23
-
-
0025291232
-
Macrophages and the human immunodeficiency virus
-
Meltzer MS, Skillman DR, Hoover DL, Hanson BD, Turpin JA, et al. (1990) Macrophages and the human immunodeficiency virus. Immunol Today 11: 217-223
-
(1990)
Immunol Today
, vol.11
, pp. 217-223
-
-
Meltzer, M.S.1
Skillman, D.R.2
Hoover, D.L.3
Hanson, B.D.4
Turpin, J.A.5
-
24
-
-
82155197617
-
Viral determinants of HIV-1 macrophage tropism
-
Duncan CJ, Sattentau QJ (2011) Viral determinants of HIV-1 macrophage tropism. Viruses 3: 2255-2279
-
(2011)
Viruses
, vol.3
, pp. 2255-2279
-
-
Duncan, C.J.1
Sattentau, Q.J.2
-
25
-
-
51849122551
-
Bioinformatic prediction programs underestimate the frequency of CXCR4 usage by R5X4 HIV type 1 in brain and other tissues
-
Mefford ME, Gorry PR, Kunstman K, Wolinsky SM, Gabuzda D (2008) Bioinformatic prediction programs underestimate the frequency of CXCR4 usage by R5X4 HIV type 1 in brain and other tissues. AIDS Res Hum Retroviruses 24: 1215-1220
-
(2008)
AIDS Res Hum Retroviruses
, vol.24
, pp. 1215-1220
-
-
Mefford, M.E.1
Gorry, P.R.2
Kunstman, K.3
Wolinsky, S.M.4
Gabuzda, D.5
-
26
-
-
4143150687
-
R5 human immunodeficiency virus type 1 (HIV-1) replicates more efficiently in primary CD4+ T-cell cultures than X4 HIV-1
-
Schweighardt B, Roy AM, Meiklejohn DA, Grace EJ 2nd, Moretto WJ, Heymann JJ, Nixon DF (2004) R5 human immunodeficiency virus type 1 (HIV-1) replicates more efficiently in primary CD4+ T-cell cultures than X4 HIV-1. J Virol 78(17): 9164-9173
-
(2004)
J Virol
, vol.78
, Issue.17
, pp. 9164-9173
-
-
Schweighardt, B.1
Roy, A.M.2
Meiklejohn, D.A.3
Grace, E.J.4
Moretto, W.J.5
Heymann, J.J.6
Nixon, D.F.7
-
27
-
-
84857830668
-
Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages
-
Ochsenbauer C, Edmonds TG, Ding H, Keele BF, Decker J, et al. (2012) Generation of transmitted/founder HIV-1 infectious molecular clones and characterization of their replication capacity in CD4 T lymphocytes and monocyte-derived macrophages. J Virol 86: 2715-2728
-
(2012)
J Virol
, vol.86
, pp. 2715-2728
-
-
Ochsenbauer, C.1
Edmonds, T.G.2
Ding, H.3
Keele, B.F.4
Decker, J.5
-
28
-
-
80052302577
-
Phenotypic and immunologic comparison of clade B transmitted/founder and chronic HIV-1 envelope glycoproteins
-
Wilen CB, Parrish NF, Pfaff JM, Decker JM, Henning EA, et al. (2011) Phenotypic and immunologic comparison of clade B transmitted/founder and chronic HIV-1 envelope glycoproteins. J Virol 85: 8514-8527
-
(2011)
J Virol
, vol.85
, pp. 8514-8527
-
-
Wilen, C.B.1
Parrish, N.F.2
Pfaff, J.M.3
Decker, J.M.4
Henning, E.A.5
-
29
-
-
44649102135
-
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
-
Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, et al. (2008) Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci U S A 105: 7552-7557
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 7552-7557
-
-
Keele, B.F.1
Giorgi, E.E.2
Salazar-Gonzalez, J.F.3
Decker, J.M.4
Pham, K.T.5
-
30
-
-
0034634585
-
Cooperative interaction between HIV-1 regulatory proteins Tat and Vpr modulates transcription of the viral genome
-
Sawaya BE, Khalili K, Gordon J, Taube R, Amini S (2000) Cooperative interaction between HIV-1 regulatory proteins Tat and Vpr modulates transcription of the viral genome. J Biol Chem 275: 35209-35214
-
(2000)
J Biol Chem
, vol.275
, pp. 35209-35214
-
-
Sawaya, B.E.1
Khalili, K.2
Gordon, J.3
Taube, R.4
Amini, S.5
-
31
-
-
74549196267
-
Regulation of HIV-1 transcription in cells of the monocyte-macrophage lineage
-
Kilareski EM, Shah S, Nonnemacher MR, Wigdahl B (2009) Regulation of HIV-1 transcription in cells of the monocyte-macrophage lineage. Retrovirology 6: 118
-
(2009)
Retrovirology
, vol.6
, pp. 118
-
-
Kilareski, E.M.1
Shah, S.2
Nonnemacher, M.R.3
Wigdahl, B.4
-
34
-
-
0032546817
-
HIV-1 regulatory/accessory genes: Keys to unraveling viral and host cell biology
-
Emerman M, Malim MH (1998) HIV-1 regulatory/accessory genes: keys to unraveling viral and host cell biology. Science 280: 1880-1884
-
(1998)
Science
, vol.280
, pp. 1880-1884
-
-
Emerman, M.1
Malim, M.H.2
-
35
-
-
0030250588
-
HIV-1, Vpr and the cell cycle
-
Emerman M (1996) HIV-1, Vpr and the cell cycle. Curr Biol 6: 1096-1103
-
(1996)
Curr Biol
, vol.6
, pp. 1096-1103
-
-
Emerman, M.1
-
36
-
-
2342637186
-
HIV- 1 Vpr: Genetic diversity and functional features from the perspective of structure
-
Tungaturthi PK, Sawaya BE, Ayyavoo V, Murali R, Srinivasan A (2004) HIV- 1 Vpr: genetic diversity and functional features from the perspective of structure. DNA Cell Biol 23: 207-222
-
(2004)
DNA Cell Biol
, vol.23
, pp. 207-222
-
-
Tungaturthi, P.K.1
Sawaya, B.E.2
Ayyavoo, V.3
Murali, R.4
Srinivasan, A.5
-
37
-
-
52649160233
-
A comprehensive analysis of the naturally occurring polymorphisms in HIV-1 Vpr: Potential impact on CTL epitopes
-
Srinivasan A, Ayyavoo V, Mahalingam S, Kannan A, Boyd A, et al. (2008) A comprehensive analysis of the naturally occurring polymorphisms in HIV-1 Vpr: potential impact on CTL epitopes. Virol J 5: 99
-
(2008)
Virol J
, vol.5
-
-
Srinivasan, A.1
Ayyavoo, V.2
Mahalingam, S.3
Kannan, A.4
Boyd, A.5
-
38
-
-
37549044256
-
HIV-1 VprB and C RNA cleavage by potent 10-23 DNAzymes that also cause reversal of G2 cell cycle arrest mediated by Vpr genes
-
Bano AS, Gupta N, Sharma Y, Sood V, Banerjea AC (2007) HIV-1 VprB and C RNA cleavage by potent 10-23 DNAzymes that also cause reversal of G2 cell cycle arrest mediated by Vpr genes. Oligonucleotides 17: 465-472
-
(2007)
Oligonucleotides
, vol.17
, pp. 465-472
-
-
Bano, A.S.1
Gupta, N.2
Sharma, Y.3
Sood, V.4
Banerjea, A.C.5
-
39
-
-
34547788360
-
Vpr from HIV-1 subtypes B and C exhibit significant differences in their ability to transactivate LTRmediated gene expression and also in their ability to promote apoptotic DNA ladder formation
-
Bano AS, Gupta N, Sood V, Banerjea AC (2007) Vpr from HIV-1 subtypes B and C exhibit significant differences in their ability to transactivate LTRmediated gene expression and also in their ability to promote apoptotic DNA ladder formation. AIDS 21: 1832-1834
-
(2007)
AIDS
, vol.21
, pp. 1832-1834
-
-
Bano, A.S.1
Gupta, N.2
Sood, V.3
Banerjea, A.C.4
-
40
-
-
70350462731
-
Genetic and functional characterization of human immunodeficiency virus type 1 VprC variants from north India: Presence of unique recombinants with mosaic genomes from B, C and D subtypes within the open reading frame of Vpr
-
Bano AS, Sood V, Neogi U, Goel N, Kuttiat VS, et al. (2009) Genetic and functional characterization of human immunodeficiency virus type 1 VprC variants from north India: presence of unique recombinants with mosaic genomes from B, C and D subtypes within the open reading frame of Vpr. J Gen Virol 90: 2768-2776
-
(2009)
J Gen Virol
, vol.90
, pp. 2768-2776
-
-
Bano, A.S.1
Sood, V.2
Neogi, U.3
Goel, N.4
Kuttiat, V.S.5
-
41
-
-
33645419106
-
Vpr and HIV-1 disease progression: R77Q mutation is associated with long-term control of HIV-1 infection in different groups of patients
-
Mologni D, Citterio P, Menzaghi B, Zanone Poma B, Riva C, et al. (2006) Vpr and HIV-1 disease progression: R77Q mutation is associated with long-term control of HIV-1 infection in different groups of patients. AIDS 20: 567-574
-
(2006)
AIDS
, vol.20
, pp. 567-574
-
-
Mologni, D.1
Citterio, P.2
Menzaghi, B.3
Zanone Poma, B.4
Riva, C.5
-
42
-
-
0034835569
-
Low conservation of functional domains of HIV type 1 vif and vpr genes in infected mothers correlates with lack of vertical transmission
-
Yedavalli VR, Ahmad N (2001) Low conservation of functional domains of HIV type 1 vif and vpr genes in infected mothers correlates with lack of vertical transmission. AIDS Res Hum Retroviruses 17: 911-923
-
(2001)
AIDS Res Hum Retroviruses
, vol.17
, pp. 911-923
-
-
Yedavalli, V.R.1
Ahmad, N.2
-
43
-
-
0026348018
-
Molecular basis of latency in pathogenic human viruses
-
Garcia-Blanco MA, Cullen BR (1991) Molecular basis of latency in pathogenic human viruses. Science 254: 815-820
-
(1991)
Science
, vol.254
, pp. 815-820
-
-
Garcia-Blanco, M.A.1
Cullen, B.R.2
-
44
-
-
0025887045
-
Regulation of HIV-1 gene expression
-
Cullen BR (1991) Regulation of HIV-1 gene expression. FASEB J 5: 2361-2368
-
(1991)
FASEB J
, vol.5
, pp. 2361-2368
-
-
Cullen, B.R.1
-
45
-
-
14444281157
-
P-TEFb kinase is required for HIV Tat transcriptional activation in vivo and in vitro
-
Mancebo HS, Lee G, Flygare J, Tomassini J, Luu P, et al. (1997) P-TEFb kinase is required for HIV Tat transcriptional activation in vivo and in vitro. Genes Dev 11: 2633-2644
-
(1997)
Genes Dev
, vol.11
, pp. 2633-2644
-
-
Mancebo, H.S.1
Lee, G.2
Flygare, J.3
Tomassini, J.4
Luu, P.5
-
47
-
-
15144348173
-
Transcription elongation factor P-TEFb is required for HIV-1 tat transactivation in vitro
-
Zhu Y, Pe'ery T, Peng J, Ramanathan Y, Marshall N, et al. (1997) Transcription elongation factor P-TEFb is required for HIV-1 tat transactivation in vitro. Genes Dev 11: 2622-2632
-
(1997)
Genes Dev
, vol.11
, pp. 2622-2632
-
-
Zhu, Y.1
Pe'ery, T.2
Peng, J.3
Ramanathan, Y.4
Marshall, N.5
-
48
-
-
0032548918
-
A novel CDK9- associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA
-
Wei P, Garber ME, Fang SM, Fischer WH, Jones KA (1998) A novel CDK9- associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell 92: 451-462
-
(1998)
Cell
, vol.92
, pp. 451-462
-
-
Wei, P.1
Garber, M.E.2
Fang, S.M.3
Fischer, W.H.4
Jones, K.A.5
-
49
-
-
33847649975
-
HIV-tat induces formation of an LRP-PSD-95- NMDAR-nNOS complex that promotes apoptosis in neurons and astrocytes
-
Eugenin EA, King JE, Nath A, Calderon TM, Zukin RS, et al. (2007) HIV-tat induces formation of an LRP-PSD-95- NMDAR-nNOS complex that promotes apoptosis in neurons and astrocytes. Proc Natl Acad Sci U S A 104: 3438-3443
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 3438-3443
-
-
Eugenin, E.A.1
King, J.E.2
Nath, A.3
Calderon, T.M.4
Zukin, R.S.5
-
50
-
-
84891433871
-
Effect of HIV clade differences on the onset and severity of HIV-associated neurocognitive disorders
-
Tyor W, Fritz-French C, Nath A (2013) Effect of HIV clade differences on the onset and severity of HIV-associated neurocognitive disorders. J Neurovirol 19:515-522
-
(2013)
J Neurovirol
, vol.19
, pp. 515-522
-
-
Tyor, W.1
Fritz-French, C.2
Nath, A.3
-
51
-
-
84878654215
-
Clade C HIV-1 isolates circulating in Southern Africa exhibit a greater frequency of dicysteine motif-containing Tat variants than those in Southeast Asia and cause increased neurovirulence
-
Rao VR, Neogi U, Talboom JS, Padilla L, Rahman M, et al. (2013) Clade C HIV-1 isolates circulating in Southern Africa exhibit a greater frequency of dicysteine motif-containing Tat variants than those in Southeast Asia and cause increased neurovirulence. Retrovirology 10: 61
-
(2013)
Retrovirology
, vol.10
, pp. 61
-
-
Rao, V.R.1
Neogi, U.2
Talboom, J.S.3
Padilla, L.4
Rahman, M.5
-
52
-
-
0242364649
-
Sequence conservation and antibody cross-recognition of clade B human immunodeficiency virus (HIV) type 1 Tat protein in HIV-1-infected Italians, Ugandans, and South Africans
-
Butto S, Fiorelli V, Tripiciano A, Ruiz-Alvarez MJ, Scoglio A, et al. (2003) Sequence conservation and antibody cross-recognition of clade B human immunodeficiency virus (HIV) type 1 Tat protein in HIV-1-infected Italians, Ugandans, and South Africans. J Infect Dis 188: 1171-1180
-
(2003)
J Infect Dis
, vol.188
, pp. 1171-1180
-
-
Butto, S.1
Fiorelli, V.2
Tripiciano, A.3
Ruiz-Alvarez, M.J.4
Scoglio, A.5
-
53
-
-
84865527007
-
Genetic characterization of HIV-1 Tat exon 1 from a southern Indian clinical cohort: Identification of unique epidemiological signature residues
-
Neogi U, Gupta S, Sahoo PN, Shet A, Rao SD, et al. (2012) Genetic characterization of HIV-1 Tat exon 1 from a southern Indian clinical cohort: identification of unique epidemiological signature residues. AIDS Res Hum Retroviruses 28:1152-1156
-
(2012)
AIDS Res Hum Retroviruses
, vol.28
, pp. 1152-1156
-
-
Neogi, U.1
Gupta, S.2
Sahoo, P.N.3
Shet, A.4
Rao, S.D.5
-
54
-
-
0029979022
-
Longitudinal studies of viral sequence, viral phenotype, and immunologic parameters of human immunodeficiency virus type 1 infection in perinatally infected twins with discordant disease courses
-
Hutto C, Zhou Y, He J, Geffin R, Hill M, et al. (1996) Longitudinal studies of viral sequence, viral phenotype, and immunologic parameters of human immunodeficiency virus type 1 infection in perinatally infected twins with discordant disease courses. J Virol 70: 3589-3598
-
(1996)
J Virol
, vol.70
, pp. 3589-3598
-
-
Hutto, C.1
Zhsou, Y.2
He, J.3
Geffin, R.4
Hill, M.5
-
55
-
-
79952958942
-
Genetic and functional heterogeneity of CNS-derived tat alleles from patients with HIV-associated dementia
-
Cowley D, Gray LR, Wesselingh SL, Gorry PR, Churchill MJ (2011) Genetic and functional heterogeneity of CNS-derived tat alleles from patients with HIV-associated dementia. J Neurovirol 17: 70-81
-
(2011)
J Neurovirol
, vol.17
, pp. 70-81
-
-
Cowley, D.1
Gray, L.R.2
Wesselingh, S.L.3
Gorry, P.R.4
Churchill, M.J.5
-
57
-
-
0031697077
-
HIV-1 tat molecular diversity and induction of TNF-alpha: Implications for HIV-induced neurological disease
-
Mayne M, Bratanich AC, Chen P, Rana F, Nath A, et al. (1998) HIV-1 tat molecular diversity and induction of TNF-alpha: implications for HIV-induced neurological disease. Neuroimmunomodulation 5: 184-192
-
(1998)
Neuroimmunomodulation
, vol.5
, pp. 184-192
-
-
Mayne, M.1
Bratanich, A.C.2
Chen, P.3
Rana, F.4
Nath, A.5
-
58
-
-
0004250845
-
-
Philadelphia: Wolters Kluwer Health/ Lippincott Williams & Wilkins. 5th edition
-
Fields BN, Knipe DM, Howley PM (2007) Fields' virology. Philadelphia: Wolters Kluwer Health/Lippincott Williams & Wilkins. 5th edition: 2664
-
(2007)
Fields' Virology
, vol.2664
-
-
Fields, B.N.1
Knipe, D.M.2
Howley, P.M.3
-
59
-
-
9644266837
-
Specific sequence configurations of HIV-1 LTR G/C box array result in altered recruitment of Sp isoforms and correlate with disease progression
-
Nonnemacher MR, Irish BP, Liu Y, Mauger D, Wigdahl B (2004) Specific sequence configurations of HIV-1 LTR G/C box array result in altered recruitment of Sp isoforms and correlate with disease progression. J Neuroimmunol 157: 39-47
-
(2004)
J Neuroimmunol
, vol.157
, pp. 39-47
-
-
Nonnemacher, M.R.1
Irish, B.P.2
Liu, Y.3
Mauger, D.4
Wigdahl, B.5
-
60
-
-
0037299334
-
Structural and functional evolution of human immunodeficiency virus type 1 long terminal repeat CCAAT/enhancer binding protein sites and their use as molecular markers for central nervous system disease progression
-
Hogan TH, Stauff DL, Krebs FC, Gartner S, Quiterio SJ, et al. (2003) Structural and functional evolution of human immunodeficiency virus type 1 long terminal repeat CCAAT/enhancer binding protein sites and their use as molecular markers for central nervous system disease progression. J Neurovirol 9: 55-68
-
(2003)
J Neurovirol
, vol.9
, pp. 55-68
-
-
Hogan, T.H.1
Stauff, D.L.2
Krebs, F.C.3
Gartner, S.4
Quiterio, S.J.5
-
61
-
-
0034922779
-
HIV-1 LTR C/EBP binding site sequence configurations preferentially encountered in brain lead to enhanced C/EBP factor binding and increased LTR-specific activity
-
Ross HL, Gartner S, McArthur JC, Corboy JR, McAllister JJ, et al. (2001) HIV-1 LTR C/EBP binding site sequence configurations preferentially encountered in brain lead to enhanced C/EBP factor binding and increased LTR-specific activity. J Neurovirol 7: 235-249
-
(2001)
J Neurovirol
, vol.7
, pp. 235-249
-
-
Ross, H.L.1
Gartner, S.2
McArthur, J.C.3
Corboy, J.R.4
McAllister, J.J.5
-
62
-
-
1542315473
-
Region-specific distribution of human immunodeficiency virus type 1 long terminal repeats containing specific configurations of CCAAT/enhancer-binding protein site II in brains derived from demented and nondemented patients
-
Burdo TH, Gartner S, Mauger D, Wigdahl B (2004) Region-specific distribution of human immunodeficiency virus type 1 long terminal repeats containing specific configurations of CCAAT/enhancer-binding protein site II in brains derived from demented and nondemented patients. J Neurovirol 10 Suppl 1: 7-14
-
(2004)
J Neurovirol 10 Suppl
, vol.1
, pp. 7-14
-
-
Burdo, T.H.1
Gartner, S.2
Mauger, D.3
Wigdahl, B.4
-
63
-
-
0030200963
-
C/EBP activators are required for HIV-1 replication and proviral induction in monocytic cell lines
-
Henderson AJ, Connor RI, Calame KL (1996) C/EBP activators are required for HIV-1 replication and proviral induction in monocytic cell lines. Immunity 5: 91-101
-
(1996)
Immunity
, vol.5
, pp. 91-101
-
-
Henderson, A.J.1
Connor, R.I.2
Calame, K.L.3
-
64
-
-
0030833640
-
CCAAT/enhancer binding protein (C/ EBP) sites are required for HIV-1 replication in primary macrophages but not CD4(+) T cells
-
Henderson AJ, Calame KL (1997) CCAAT/enhancer binding protein (C/ EBP) sites are required for HIV-1 replication in primary macrophages but not CD4(+) T cells. Proc Natl Acad Sci U S A 94: 8714-8719
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 8714-8719
-
-
Henderson, A.J.1
Calame, K.L.2
-
65
-
-
0035065394
-
Estimating mutation rate and generation time from longitudinal samples of DNA sequences
-
Fu YX (2001) Estimating mutation rate and generation time from longitudinal samples of DNA sequences. Mol Biol Evol 18: 620-626
-
(2001)
Mol Biol Evol
, vol.18
, pp. 620-626
-
-
Fu, Y.X.1
-
66
-
-
12144289425
-
Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission
-
Derdeyn CA, Decker JM, Bibollet-Ruche F, Mokili JL, Muldoon M, et al. (2004) Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission. Science 303: 2019-2022
-
(2004)
Science
, vol.303
, pp. 2019-2022
-
-
Derdeyn, C.A.1
Decker, J.M.2
Bibollet-Ruche, F.3
Mokili, J.L.4
Muldoon, M.5
-
67
-
-
18144397438
-
Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels
-
Chohan B, Lang D, Sagar M, Korber B, Lavreys L, et al. (2005) Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels. J Virol 79: 6528-6531
-
(2005)
J Virol
, vol.79
, pp. 6528-6531
-
-
Chohan, B.1
Lang, D.2
Sagar, M.3
Korber, B.4
Lavreys, L.5
-
68
-
-
42649129348
-
Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses
-
Liu Y, Curlin ME, Diem K, Zhao H, Ghosh AK, et al. (2008) Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses. Virology 374: 229-233
-
(2008)
Virology
, vol.374
, pp. 229-233
-
-
Liu, Y.1
Curlin, M.E.2
Diem, K.3
Zhao, H.4
Ghosh, A.K.5
-
69
-
-
80053452761
-
Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections
-
Gnanakaran S, Bhattacharya T, Daniels M, Keele BF, Hraber PT, et al. (2011) Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections. PLoS Pathog 7: e1002209
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002209
-
-
Gnanakaran, S.1
Bhattacharya, T.2
Daniels, M.3
Keele, B.F.4
Hraber, P.T.5
-
70
-
-
84874736997
-
Transmitted/founder and chronic HIV-1 envelope proteins are distinguished by differential utilization of CCR5
-
Parker ZF, Iyer SS, Wilen CB, Parrish NF, Chikere KC, et al. (2013) Transmitted/founder and chronic HIV-1 envelope proteins are distinguished by differential utilization of CCR5. J Virol 87: 2401-2411
-
(2013)
J Virol
, vol.87
, pp. 2401-2411
-
-
Parker, Z.F.1
Iyer, S.S.2
Wilen, C.B.3
Parrish, N.F.4
Chikere, K.C.5
-
71
-
-
84876867850
-
Phenotypic properties of transmitted founder HIV-1
-
Parrish NF, Gao F, Li H, Giorgi EE, Barbian HJ, et al. (2013) Phenotypic properties of transmitted founder HIV-1. Proc Natl Acad Sci U S A 110: 6626-6633
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 6626-6633
-
-
Parrish, N.F.1
Gao, F.2
Li, H.3
Giorgi, E.E.4
Barbian, H.J.5
-
72
-
-
0028941072
-
Envelope V2 configuration and HIV-1 phenotype: Clarification
-
Schuitemaker H, Fouchier RA, Broersen S, Groenink M, Koot M, et al. (1995) Envelope V2 configuration and HIV-1 phenotype: clarification. Science 268: 115
-
(1995)
Science
, vol.268
-
-
Schuitemaker, H.1
Fouchier, R.A.2
Broersen, S.3
Groenink, M.4
Koot, M.5
-
73
-
-
0028783755
-
Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1
-
Poss M, Martin HL, Kreiss JK, Granville L, Chohan B, et al. (1995) Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1. J Virol 69: 8118-8122
-
(1995)
J Virol
, vol.69
, pp. 8118-8122
-
-
Poss, M.1
Martin, H.L.2
Kreiss, J.K.3
Granville, L.4
Chohan, B.5
-
74
-
-
0033050190
-
Identification of CXCR4 domains that support coreceptor and chemokine receptor functions
-
Doranz BJ, Orsini MJ, Turner JD, Hoffman TL, Berson JF, et al. (1999) Identification of CXCR4 domains that support coreceptor and chemokine receptor functions. J Virol 73: 2752-2761
-
(1999)
J Virol
, vol.73
, pp. 2752-2761
-
-
Doranz, B.J.1
Orsini, M.J.2
Turner, J.D.3
Hoffman, T.L.4
Berson, J.F.5
-
75
-
-
0026600926
-
Biological phenotype of human immunodeficiency virus type 1 clones at different stages of infection: Progression of disease is associated with a shift from monocytotropic to T-cell-tropic virus population
-
Schuitemaker H, Koot M, Kootstra NA, Dercksen MW, de Goede RE, et al. (1992) Biological phenotype of human immunodeficiency virus type 1 clones at different stages of infection: progression of disease is associated with a shift from monocytotropic to T-cell-tropic virus population. J Virol 66: 1354-1360
-
(1992)
J Virol
, vol.66
, pp. 1354-1360
-
-
Schuitemaker, H.1
Koot, M.2
Kootstra, N.A.3
Dercksen, M.W.4
De Goede, R.E.5
-
76
-
-
41549138227
-
Functional diversity of HIV-1 envelope proteins expressed by contemporaneous plasma viruses
-
Nora T, Bouchonnet F, Labrosse B, Charpentier C, Mammano F, et al. (2008) Functional diversity of HIV-1 envelope proteins expressed by contemporaneous plasma viruses. Retrovirology 5: 23
-
(2008)
Retrovirology
, vol.5
, pp. 23
-
-
Nora, T.1
Bouchonnet, F.2
Labrosse, B.3
Charpentier, C.4
Mammano, F.5
-
77
-
-
21644487246
-
Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions
-
Joos B, Trkola A, Fischer M, Kuster H, Rusert P, et al. (2005) Low human immunodeficiency virus envelope diversity correlates with low in vitro replication capacity and predicts spontaneous control of plasma viremia after treatment interruptions. J Virol 79: 9026-9037
-
(2005)
J Virol
, vol.79
, pp. 9026-9037
-
-
Joos, B.1
Trkola, A.2
Fischer, M.3
Kuster, H.4
Rusert, P.5
-
78
-
-
33646858570
-
Diversity in HIV-1 envelope V1-V3 sequences early in infection reflects sequence diversity throughout the HIV-1 genome but does not predict the extent of sequence diversity during chronic infection
-
Sagar M, Kirkegaard E, Lavreys L, Overbaugh J (2006) Diversity in HIV-1 envelope V1-V3 sequences early in infection reflects sequence diversity throughout the HIV-1 genome but does not predict the extent of sequence diversity during chronic infection. AIDS Res Hum Retroviruses 22: 430-437
-
(2006)
AIDS Res Hum Retroviruses
, vol.22
, pp. 430-437
-
-
Sagar, M.1
Kirkegaard, E.2
Lavreys, L.3
Overbaugh, J.4
-
79
-
-
0031575431
-
Change in coreceptor use correlates with disease progression in HIV-1-infected individuals
-
Connor RI, Sheridan KE, Ceradini D, Choe S, Landau NR (1997) Change in coreceptor use correlates with disease progression in HIV-1-infected individuals. J Exp Med 185: 621-628
-
(1997)
J Exp Med
, vol.185
, pp. 621-628
-
-
Connor, R.I.1
Sheridan, K.E.2
Ceradini, D.3
Choe, S.4
Landau, N.R.5
-
80
-
-
0026702003
-
Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: Analysis by single amino acid substitution
-
De Jong JJ, De Ronde A, Keulen W, Tersmette M, Goudsmit J (1992) Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution. J Virol 66: 6777-6780
-
(1992)
J Virol
, vol.66
, pp. 6777-6780
-
-
De Jong, J.J.1
De Ronde, A.2
Keulen, W.3
Tersmette, M.4
Goudsmit, J.5
-
82
-
-
79952941684
-
Development of co-selected single nucleotide polymorphisms in the viral promoter precedes the onset of human immunodeficiency virus type 1- associated neurocognitive impairment
-
Li L, Aiamkitsumrit B, Pirrone V, Nonnemacher MR, Wojno A, et al. (2011) Development of co-selected single nucleotide polymorphisms in the viral promoter precedes the onset of human immunodeficiency virus type 1- associated neurocognitive impairment. J Neurovirol 17: 92-109
-
(2011)
J Neurovirol
, vol.17
, pp. 92-109
-
-
Li, L.1
Aiamkitsumrit, B.2
Pirrone, V.3
Nonnemacher, M.R.4
Wojno, A.5
-
83
-
-
79953848334
-
HIV-1 accessory protein Vpr: Relevance in the pathogenesis of HIV and potential for therapeutic intervention
-
Kogan M, Rappaport J (2011) HIV-1 accessory protein Vpr: relevance in the pathogenesis of HIV and potential for therapeutic intervention. Retrovirology 8: 25
-
(2011)
Retrovirology
, vol.8
, pp. 25
-
-
Kogan, M.1
Rappaport, J.2
-
84
-
-
81155151443
-
Human immunodeficiency virus viral protein R as an extracellular protein in neuropathogenesis
-
Ferrucci A, Nonnemacher MR, Wigdahl B (2011) Human immunodeficiency virus viral protein R as an extracellular protein in neuropathogenesis. Adv Virus Res 81: 165-199
-
(2011)
Adv Virus Res
, vol.81
, pp. 165-199
-
-
Ferrucci, A.1
Nonnemacher, M.R.2
Wigdahl, B.3
-
85
-
-
84873863865
-
Impact of Tat genetic variation on HIV-1 disease
-
Li L, Dahiya S, Kortagere S, Aiamkitsumrit B, Cunningham D, et al. (2012) Impact of Tat genetic variation on HIV-1 disease. Adv Virol 2012: 123605
-
(2012)
Adv Virol
, vol.2012
, pp. 123605
-
-
Li, L.1
Dahiya, S.2
Kortagere, S.3
Aiamkitsumrit, B.4
Cunningham, D.5
-
86
-
-
84907510876
-
-
Los Alamos National Laboratory. Accessed 2014 August 27
-
Los Alamos National Laboratory. http://www.hiv.lanl.gov. Accessed 2014 August 27
-
-
-
-
87
-
-
0036957557
-
Regulation of human immunodeficiency virus type 1 gene expression and pathogenesis by CCAAT/enhancer binding proteins in cells of the monocyte/macrophage lineage
-
Hogan TH, Krebs FC, Wigdahl B (2002) Regulation of human immunodeficiency virus type 1 gene expression and pathogenesis by CCAAT/enhancer binding proteins in cells of the monocyte/macrophage lineage. J Neurovirol 8 Suppl 2: 21-26
-
(2002)
J Neurovirol 8 Suppl
, vol.2
, pp. 21-26
-
-
Hogan, T.H.1
Krebs, F.C.2
Wigdahl, B.3
-
88
-
-
0029156755
-
C/EBP proteins activate transcription from the human immunodeficiency virus type 1 long terminal repeat in macrophages/monocytes
-
Henderson AJ, Zou X, Calame KL (1995) C/EBP proteins activate transcription from the human immunodeficiency virus type 1 long terminal repeat in macrophages/monocytes. J Virol 69: 5337-5344
-
(1995)
J Virol
, vol.69
, pp. 5337-5344
-
-
Henderson, A.J.1
Zou, X.2
Calame, K.L.3
-
89
-
-
0022930841
-
HTLV-III and the etiology of AIDS
-
Gallo RC, Sarngadharan MG, Popovic M, Shaw GM, Hahn B, et al. (1986) HTLV-III and the etiology of AIDS. Prog Allergy 37: 1-45
-
(1986)
Prog Allergy
, vol.37
, pp. 1-45
-
-
Gallo, R.C.1
Sarngadharan, M.G.2
Popovic, M.3
Shaw, G.M.4
Hahn, B.5
-
90
-
-
0022541470
-
Genetic variation in HTLV-III/LAV over time in patients with AIDS or at risk for AIDS
-
Hahn BH, Shaw GM, Taylor ME, Redfield RR, Markham PD, et al. (1986) Genetic variation in HTLV-III/LAV over time in patients with AIDS or at risk for AIDS. Science 232: 1548-1553
-
(1986)
Science
, vol.232
, pp. 1548-1553
-
-
Hahn, B.H.1
Shaw, G.M.2
Taylor, M.E.3
Redfield, R.R.4
Markham, P.D.5
-
91
-
-
0029819128
-
Selective transmission of human immunodeficiency virus type 1 variants to SCID mice reconstituted with human peripheral blood monoclonal cells
-
Markham RB, Schwartz DH, Templeton A, Margolick JB, Farzadegan H, et al. (1996) Selective transmission of human immunodeficiency virus type 1 variants to SCID mice reconstituted with human peripheral blood monoclonal cells. J Virol 70: 6947-6954
-
(1996)
J Virol
, vol.70
, pp. 6947-6954
-
-
Markham, R.B.1
Schwartz, D.H.2
Templeton, A.3
Margolick, J.B.4
Farzadegan, H.5
-
92
-
-
13144256774
-
Patterns of HIV-1 evolution in individuals with differing rates of CD4 T cell decline
-
Markham RB, Wang WC, Weisstein AE, Wang Z, Munoz A, et al. (1998) Patterns of HIV-1 evolution in individuals with differing rates of CD4 T cell decline. Proc Natl Acad Sci U S A 95: 12568-12573
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 12568-12573
-
-
Markham, R.B.1
Wang, W.C.2
Weisstein, A.E.3
Wang, Z.4
Munoz, A.5
-
93
-
-
0030018156
-
CC CKR5: A RANTES, MIP-1alpha, MIP-1beta receptor as a fusion cofactor for macrophage-tropic HIV-1
-
Alkhatib G, Combadiere C, Broder CC, Feng Y, Kennedy PE, et al. (1996) CC CKR5: a RANTES, MIP-1alpha, MIP-1beta receptor as a fusion cofactor for macrophage-tropic HIV-1. Science 272: 1955-1958
-
(1996)
Science
, vol.272
, pp. 1955-1958
-
-
Alkhatib, G.1
Combadiere, C.2
Broder, C.C.3
Feng, Y.4
Kennedy, P.E.5
-
94
-
-
16044367526
-
The role of a mutant CCR5 allele in HIV-1 transmission and disease progression
-
Huang Y, Paxton WA, Wolinsky SM, Neumann AU, Zhang L, et al. (1996) The role of a mutant CCR5 allele in HIV-1 transmission and disease progression. Nat Med 2: 1240-1243
-
(1996)
Nat Med
, vol.2
, pp. 1240-1243
-
-
Huang, Y.1
Paxton, W.A.2
Wolinsky, S.M.3
Neumann, A.U.4
Zhang, L.5
-
95
-
-
39749184106
-
Human immunodeficiency virus type 1 Vpr inhibits axonal outgrowth through induction of mitochondrial dysfunction
-
Kitayama H, Miura Y, Ando Y, Hoshino S, Ishizaka Y, et al. (2008) Human immunodeficiency virus type 1 Vpr inhibits axonal outgrowth through induction of mitochondrial dysfunction. J Virol 82: 2528-2542
-
(2008)
J Virol
, vol.82
, pp. 2528-2542
-
-
Kitayama, H.1
Miura, Y.2
Ando, Y.3
Hoshino, S.4
Ishizaka, Y.5
-
96
-
-
0035882082
-
A novel inducible expression system to study transdominant mutants of HIV-1 Vpr
-
Zhou Y, Ratner L (2001) A novel inducible expression system to study transdominant mutants of HIV-1 Vpr. Virology 287: 133-142
-
(2001)
Virology
, vol.287
, pp. 133-142
-
-
Zhou, Y.1
Ratner, L.2
-
97
-
-
0032908409
-
Reciprocal modulatory interaction between human immunodeficiency virus type 1 Tat and transcription factor NFAT1
-
Macian F, Rao A (1999) Reciprocal modulatory interaction between human immunodeficiency virus type 1 Tat and transcription factor NFAT1. Mol Cell Biol 19: 3645-3653
-
(1999)
Mol Cell Biol
, vol.19
, pp. 3645-3653
-
-
Macian, F.1
Rao, A.2
-
98
-
-
0030914237
-
HIV-1 Tat induces the expression of the interleukin-6 (IL6) gene by binding to the IL6 leader RNA and by interacting with CAAT enhancer-binding protein beta (NF-IL6) transcription factors
-
Ambrosino C, Ruocco MR, Chen X, Mallardo M, Baudi F, et al. (1997) HIV-1 Tat induces the expression of the interleukin-6 (IL6) gene by binding to the IL6 leader RNA and by interacting with CAAT enhancer-binding protein beta (NF-IL6) transcription factors. J Biol Chem 272: 14883-14892
-
(1997)
J Biol Chem
, vol.272
, pp. 14883-14892
-
-
Ambrosino, C.1
Ruocco, M.R.2
Chen, X.3
Mallardo, M.4
Baudi, F.5
-
99
-
-
84856484784
-
Control of HIV latency by epigenetic and nonepigenetic mechanisms
-
Mbonye U, Karn J (2011) Control of HIV latency by epigenetic and nonepigenetic mechanisms. Curr HIV Res 9: 554-567
-
(2011)
Curr HIV Res
, vol.9
, pp. 554-567
-
-
Mbonye, U.1
Karn, J.2
-
100
-
-
57749099233
-
Thioredoxin reductase-1 negatively regulates HIV-1 transactivating protein Tat-dependent transcription in human macrophages
-
Kalantari P, Narayan V, Natarajan SK, Muralidhar K, Gandhi UH, et al. (2008) Thioredoxin reductase-1 negatively regulates HIV-1 transactivating protein Tat-dependent transcription in human macrophages. J Biol Chem 283: 33183-33190
-
(2008)
J Biol Chem
, vol.283
, pp. 33183-33190
-
-
Kalantari, P.1
Narayan, V.2
Natarajan, S.K.3
Muralidhar, K.4
Gandhi, U.H.5
-
101
-
-
0031924466
-
Human immunodeficiency virus type 1 T-lymphotropic strains enter macrophages via a CD4- and CXCR4-mediated pathway: Replication is restricted at a postentry level
-
Schmidtmayerova H, Alfano M, Nuovo G, Bukrinsky M (1998) Human immunodeficiency virus type 1 T-lymphotropic strains enter macrophages via a CD4- and CXCR4-mediated pathway: replication is restricted at a postentry level. J Virol 72: 4633-4642
-
(1998)
J Virol
, vol.72
, pp. 4633-4642
-
-
Schmidtmayerova, H.1
Alfano, M.2
Nuovo, G.3
Bukrinsky, M.4
-
102
-
-
0027741227
-
Sequence specific binding of the transcription factor c-Ets1 to the human immunodeficiency virus type i long terminal repeat
-
Holzmeister J, Ludewig B, Pauli G, Simon D (1993) Sequence specific binding of the transcription factor c-Ets1 to the human immunodeficiency virus type I long terminal repeat. Biochem Biophys Res Commun 197: 1229-1233
-
(1993)
Biochem Biophys Res Commun
, vol.197
, pp. 1229-1233
-
-
Holzmeister, J.1
Ludewig, B.2
Pauli, G.3
Simon, D.4
-
103
-
-
0032705002
-
Regulation of HIV-1 transcription
-
Roebuck KA, Saifuddin M (1999) Regulation of HIV-1 transcription. Gene Expr 8: 67-84
-
(1999)
Gene Expr
, vol.8
, pp. 67-84
-
-
Roebuck, K.A.1
Saifuddin, M.2
-
104
-
-
0028785842
-
Interactions of the transcription factor AP-1 with the long terminal repeat of different human immunodeficiency virus type 1 strains in Jurkat, glial, and neuronal cells
-
Canonne-Hergaux F, Aunis D, Schaeffer E (1995) Interactions of the transcription factor AP-1 with the long terminal repeat of different human immunodeficiency virus type 1 strains in Jurkat, glial, and neuronal cells. J Virol 69: 6634-6642
-
(1995)
J Virol
, vol.69
, pp. 6634-6642
-
-
Canonne-Hergaux, F.1
Aunis, D.2
Schaeffer, E.3
-
105
-
-
0024318345
-
Effects of long terminal repeat mutations on human immunodeficiency virus type 1 replication
-
Lu Y, Stenzel M, Sodroski JG, Haseltine WA (1989) Effects of long terminal repeat mutations on human immunodeficiency virus type 1 replication. J Virol 63: 4115-4119
-
(1989)
J Virol
, vol.63
, pp. 4115-4119
-
-
Lu, Y.1
Stenzel, M.2
Sodroski, J.G.3
Haseltine, W.A.4
-
106
-
-
0025944629
-
Chicken ovalbumin upstream promoter transcription factor binds to a negative regulatory region in the human immunodeficiency virus type 1 long terminal repeat
-
Cooney AJ, Tsai SY, O'Malley BW, Tsai MJ (1991) Chicken ovalbumin upstream promoter transcription factor binds to a negative regulatory region in the human immunodeficiency virus type 1 long terminal repeat. J Virol 65: 2853-2860
-
(1991)
J Virol
, vol.65
, pp. 2853-2860
-
-
Cooney, A.J.1
Tsai, S.Y.2
O'malley, B.W.3
Tsai, M.J.4
-
107
-
-
0037385366
-
A glucocorticoid response element in the LTR U3 region of Friend murine leukaemia virus variant FIS-2 enhances virus production in vitro and is a major determinant for sex differences in susceptibility to FIS-2 infection in vivo
-
Bruland T, Lavik LA, Dai HY, Dalen A (2003) A glucocorticoid response element in the LTR U3 region of Friend murine leukaemia virus variant FIS-2 enhances virus production in vitro and is a major determinant for sex differences in susceptibility to FIS-2 infection in vivo. J Gen Virol 84: 907-916
-
(2003)
J Gen Virol
, vol.84
, pp. 907-916
-
-
Bruland, T.1
Lavik, L.A.2
Dai, H.Y.3
Dalen, A.4
-
108
-
-
0034284908
-
Analysis of the HIV-1 LTR NF-kappaB-proximal Sp site III: Evidence for cell typespecific gene regulation and viral replication
-
McAllister JJ, Phillips D, Millhouse S, Conner J, Hogan T, et al. (2000) Analysis of the HIV-1 LTR NF-kappaB-proximal Sp site III: evidence for cell typespecific gene regulation and viral replication. Virology 274: 262-277
-
(2000)
Virology
, vol.274
, pp. 262-277
-
-
McAllister, J.J.1
Phillips, D.2
Millhouse, S.3
Conner, J.4
Hogan, T.5
-
109
-
-
79957613599
-
Molecular evolutionary genetics analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
-
April MEGA. 5.05 ed,Available,Accessed 2014 August 27
-
Tamura K, Peterson N, Stecher G, Nei M, Kumar S (April 2011) MEGA. 5.05 ed. Molecular evolutionary genetics analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution 28: 2731-2739. Available: http://www.megasoftware.net. Accessed 2014 August 27
-
(2011)
Molecular Biology and Evolution
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, N.2
Stecher, G.3
Nei, M.4
Kumar, S.5
-
110
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275-282
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
111
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
113
-
-
84907510875
-
-
Max Planck Institut fü r Informatik (2011) Geno2Pheno. Available Accessed 2014 August 27 114
-
Max Planck Institut fü r Informatik (2011) Geno2Pheno. Available: http:// www.mpi-inf.mpg.de/. Accessed 2014 August 27
-
-
-
-
114
-
-
84907510874
-
-
AvailableAccessed 2014 August 27, Accessed 2014 August 27
-
Jensen M (2007-2009) PSSM. Available: http://indra.mullins.microbiol.washington.edu/webpssm/. Accessed 2014 August 27
-
(2007)
PSSM
-
-
Jensen, M.1
-
115
-
-
84891808382
-
JASPAR 2014: An extensively expanded and updated open-access database of transcription factor binding profiles
-
Mathelier A, Zhao X, Zhang A, Parcy F, Worsley-Hunt R, et al. (2014) JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucl Acids Res 42(D1): D142-D147
-
(2014)
Nucl Acids Res
, vol.42
, Issue.D1
, pp. D142-D147
-
-
Mathelier, A.1
Zhao, X.2
Zhang, A.3
Parcy, F.4
Worsley-Hunt, R.5
|