-
1
-
-
0033059981
-
Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
Zhao, J., Hyman, L., and Moore, C. L. (1999) Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis Microbiol. Mol. Biol. Rev. 63, 405-445
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.L.3
-
2
-
-
42449084129
-
Protein factors in pre-mRNA 3′-end processing
-
Mandel, C. R., Bai, Y., and Tong, L. (2008) Protein factors in pre-mRNA 3′-end processing Cell. Mol. Life Sci. 65, 1099-1122
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 1099-1122
-
-
Mandel, C.R.1
Bai, Y.2
Tong, L.3
-
3
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore, M. J. and Proudfoot, N. J. (2009) Pre-mRNA processing reaches back to transcription and ahead to translation Cell 136, 688-700
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
4
-
-
77953284100
-
Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation
-
Millevoi, S. and Vagner, S. (2010) Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation Nucleic Acids Res. 38, 2757-2774
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2757-2774
-
-
Millevoi, S.1
Vagner, S.2
-
5
-
-
72849106592
-
RNA processing and its regulation: Global insights into biological networks
-
Licatalosi, D. D. and Darnell, R. B. (2010) RNA processing and its regulation: Global insights into biological networks Nat. Rev. Genet. 11, 75-87
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 75-87
-
-
Licatalosi, D.D.1
Darnell, R.B.2
-
6
-
-
84857743195
-
Structural biology of poly(A) site definition
-
Yang, Q. and Doublie, S. (2011) Structural biology of poly(A) site definition Wiley Interdiscip. Rev.: RNA 2, 732-747
-
(2011)
Wiley Interdiscip. Rev.: RNA
, vol.2
, pp. 732-747
-
-
Yang, Q.1
Doublie, S.2
-
7
-
-
84857761249
-
Pre-mRNA 3′-end processing complex assembly and function
-
Chan, S., Choi, E. A., and Shi, Y. (2011) pre-mRNA 3′-end processing complex assembly and function Wiley Interdiscip. Rev.: RNA 2, 321-335
-
(2011)
Wiley Interdiscip. Rev.: RNA
, vol.2
, pp. 321-335
-
-
Chan, S.1
Choi, E.A.2
Shi, Y.3
-
8
-
-
84875429298
-
Reflection of the history of pre-mRNA processing and highlights of current knowledge: A united picture
-
Darnell, J. E., Jr. (2013) Reflection of the history of pre-mRNA processing and highlights of current knowledge: A united picture RNA 19, 443-460
-
(2013)
RNA
, vol.19
, pp. 443-460
-
-
Darnell, Jr.J.E.1
-
9
-
-
84857772692
-
Alternative mRNA polyadenylation in eukaryotes: An effective regulator of gene expression
-
Lutz, C. S. and Moreira, A. (2011) Alternative mRNA polyadenylation in eukaryotes: An effective regulator of gene expression Wiley Interdiscip. Rev.: RNA 2, 22-31
-
(2011)
Wiley Interdiscip. Rev.: RNA
, vol.2
, pp. 22-31
-
-
Lutz, C.S.1
Moreira, A.2
-
10
-
-
84869765539
-
Alternative polyadenylation: New insights from global analyses
-
Shi, Y. (2012) Alternative polyadenylation: New insights from global analyses RNA 18, 2105-2117
-
(2012)
RNA
, vol.18
, pp. 2105-2117
-
-
Shi, Y.1
-
11
-
-
84878151459
-
Alternative cleavage and polyadenylation: The long and short of it
-
Tian, B. and Manley, J. L. (2013) Alternative cleavage and polyadenylation: The long and short of it Trends Biochem. Sci. 38, 312-320
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 312-320
-
-
Tian, B.1
Manley, J.L.2
-
12
-
-
84857707387
-
Control of poly(A) tail length
-
Eckmann, C. R., Rammelt, C., and Wahle, E. (2011) Control of poly(A) tail length Wiley Interdiscip. Rev.: RNA 2, 348-361
-
(2011)
Wiley Interdiscip. Rev.: RNA
, vol.2
, pp. 348-361
-
-
Eckmann, C.R.1
Rammelt, C.2
Wahle, E.3
-
13
-
-
84861911071
-
Translational control by changes in poly(A) tail length: Recycling mRNAs
-
Weill, L., Belloc, E., Bava, F. A., and Mendez, R. (2012) Translational control by changes in poly(A) tail length: Recycling mRNAs Nat. Struct. Mol. Biol. 19, 577-585
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 577-585
-
-
Weill, L.1
Belloc, E.2
Bava, F.A.3
Mendez, R.4
-
14
-
-
80052447253
-
Ending the message: Poly(A) signals then and now
-
Proudfoot, N. J. (2011) Ending the message: Poly(A) signals then and now Genes Dev. 25, 1770-1782
-
(2011)
Genes Dev.
, vol.25
, pp. 1770-1782
-
-
Proudfoot, N.J.1
-
15
-
-
78649816325
-
Connections between 3′-end processing and DNA damage response
-
Cevher, M. A. and Kleiman, F. E. (2010) Connections between 3′-end processing and DNA damage response Wiley Interdiscip. Rev.: RNA 1, 193-199
-
(2010)
Wiley Interdiscip. Rev.: RNA
, vol.1
, pp. 193-199
-
-
Cevher, M.A.1
Kleiman, F.E.2
-
16
-
-
59649122202
-
Molecular architecture of the human pre-mRNA 3′ processing complex
-
Shi, Y., di Giammartino, D. C., Taylor, D., Sarkeshik, A., Rice, W. J., Yates, J. R., III, Frank, J., and Manley, J. L. (2009) Molecular architecture of the human pre-mRNA 3′ processing complex Mol. Cell 33, 365-376
-
(2009)
Mol. Cell
, vol.33
, pp. 365-376
-
-
Shi, Y.1
Di Giammartino, D.C.2
Taylor, D.3
Sarkeshik, A.4
Rice, W.J.5
Yates III, J.R.6
Frank, J.7
Manley, J.L.8
-
17
-
-
33845902048
-
Polyadenylation factor CPSF-73 is the pre-mRNA 3′-end-processing endonuclease
-
Mandel, C. R., Kaneko, S., Zhang, H., Gebauer, D., Vethantham, V., Manley, J. L., and Tong, L. (2006) Polyadenylation factor CPSF-73 is the pre-mRNA 3′-end-processing endonuclease Nature 444, 953-956
-
(2006)
Nature
, vol.444
, pp. 953-956
-
-
Mandel, C.R.1
Kaneko, S.2
Zhang, H.3
Gebauer, D.4
Vethantham, V.5
Manley, J.L.6
Tong, L.7
-
18
-
-
77955412028
-
What is the role of RNase J in mRNA turnover?
-
Condon, C. (2010) What is the role of RNase J in mRNA turnover? RNA Biol. 7, 316-321
-
(2010)
RNA Biol.
, vol.7
, pp. 316-321
-
-
Condon, C.1
-
19
-
-
84877826524
-
Emergence of the b-CASP ribonucleases: Highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation
-
Dominski, Z., Carpousis, A. J., and Clouet-dOrval, B. (2013) Emergence of the b-CASP ribonucleases: Highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation Biochim. Biophys. Acta 1829, 532-551
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 532-551
-
-
Dominski, Z.1
Carpousis, A.J.2
Clouet-Dorval, B.3
-
20
-
-
77955794351
-
Crystal structure of an archael cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii
-
Nishida, Y., Ishikawa, H., Baba, S., Nakagawa, N., Kuramitsu, S., and Masui, R. (2010) Crystal structure of an archael cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii Proteins 78, 2395-2398
-
(2010)
Proteins
, vol.78
, pp. 2395-2398
-
-
Nishida, Y.1
Ishikawa, H.2
Baba, S.3
Nakagawa, N.4
Kuramitsu, S.5
Masui, R.6
-
21
-
-
78649905057
-
Crystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor
-
Mir-Montazeri, B., Ammelburg, M., Forouzan, D., Lupas, A. N., and Hartmann, M. D. (2011) Crystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor J. Struct. Biol. 173, 191-195
-
(2011)
J. Struct. Biol.
, vol.173
, pp. 191-195
-
-
Mir-Montazeri, B.1
Ammelburg, M.2
Forouzan, D.3
Lupas, A.N.4
Hartmann, M.D.5
-
22
-
-
79955860702
-
Structure and activity of a novel archael β-CASP protein with N-terminal KH domains
-
Silva, A. P., Chechik, M., Byrne, R. T., Waterman, D. G., Ng, C. L., Dodson, E. J., Koonin, E. V., Antson, A. A., and Smits, C. (2011) Structure and activity of a novel archael β-CASP protein with N-terminal KH domains Structure 19, 622-632
-
(2011)
Structure
, vol.19
, pp. 622-632
-
-
Silva, A.P.1
Chechik, M.2
Byrne, R.T.3
Waterman, D.G.4
Ng, C.L.5
Dodson, E.J.6
Koonin, E.V.7
Antson, A.A.8
Smits, C.9
-
23
-
-
46049095239
-
Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein
-
Meinke, G., Ezeokonkwo, C., Balbo, P. B., Stafford, W., Moore, C., and Bohm, A. (2008) Structure of yeast poly(A) polymerase in complex with a peptide from Fip1, an intrinsically disordered protein Biochemistry 47, 6859-6869
-
(2008)
Biochemistry
, vol.47
, pp. 6859-6869
-
-
Meinke, G.1
Ezeokonkwo, C.2
Balbo, P.B.3
Stafford, W.4
Moore, C.5
Bohm, A.6
-
24
-
-
79953022064
-
A flexible linker region in Fip1 is needed for efficient mRNA polyadenylation
-
Ezeokonkwo, C., Zhelkovsky, A. M., Lee, R., Bohm, A., and Moore, C. L. (2011) A flexible linker region in Fip1 is needed for efficient mRNA polyadenylation RNA 17, 652-664
-
(2011)
RNA
, vol.17
, pp. 652-664
-
-
Ezeokonkwo, C.1
Zhelkovsky, A.M.2
Lee, R.3
Bohm, A.4
Moore, C.L.5
-
25
-
-
33645792617
-
The CPSF30 binding site on the NS1A protein of influenza A virus is a potential antiviral target
-
Twu, K. Y., Noah, D. L., Rao, P., Kuo, R. L., and Krug, R. M. (2006) The CPSF30 binding site on the NS1A protein of influenza A virus is a potential antiviral target J. Virol. 80, 3957-3965
-
(2006)
J. Virol.
, vol.80
, pp. 3957-3965
-
-
Twu, K.Y.1
Noah, D.L.2
Rao, P.3
Kuo, R.L.4
Krug, R.M.5
-
26
-
-
54449099369
-
The multifunctional NS1 protein of influenza viruses
-
Hale, B. G., Randall, R. E., Ortin, J., and Jackson, D. (2008) The multifunctional NS1 protein of influenza viruses J. Gen. Virol. 89, 2359-2376
-
(2008)
J. Gen. Virol.
, vol.89
, pp. 2359-2376
-
-
Hale, B.G.1
Randall, R.E.2
Ortin, J.3
Jackson, D.4
-
27
-
-
84874690730
-
Contribution of double-stranded RNA and CPSF30 binding domains of influenza virus NS1 to the inhibition of type i interferon production and activation of human dendritic cells
-
Ramos, I., Carnero, E., Bernal-Rubio, D., Seibert, C. W., Westera, L., Garcia-Sastre, A., and Fernandez-Sesma, A. (2013) Contribution of double-stranded RNA and CPSF30 binding domains of influenza virus NS1 to the inhibition of type I interferon production and activation of human dendritic cells J. Virol. 87, 2430-2440
-
(2013)
J. Virol.
, vol.87
, pp. 2430-2440
-
-
Ramos, I.1
Carnero, E.2
Bernal-Rubio, D.3
Seibert, C.W.4
Westera, L.5
Garcia-Sastre, A.6
Fernandez-Sesma, A.7
-
28
-
-
59649123636
-
Influenza A virus polymerase is an integral component of the CPSF30-NS1A protein complex in infected cells
-
Kuo, R. L. and Krug, R. M. (2009) Influenza A virus polymerase is an integral component of the CPSF30-NS1A protein complex in infected cells J. Virol. 83, 1611-1616
-
(2009)
J. Virol.
, vol.83
, pp. 1611-1616
-
-
Kuo, R.L.1
Krug, R.M.2
-
29
-
-
51349124912
-
Structural basis for suppression of a host antiviral response by influenza virus
-
Das, K., Ma, L. C., Xiao, R., Radvansky, B., Aramini, J., Zhao, L., Marklund, J., Kuo, R. L., Twu, K. Y., Arnold, E., Krug, R. M., and Montelione, G. T. (2008) Structural basis for suppression of a host antiviral response by influenza virus Proc. Natl. Acad. Sci. U.S.A. 105, 13093-13098
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 13093-13098
-
-
Das, K.1
Ma, L.C.2
Xiao, R.3
Radvansky, B.4
Aramini, J.5
Zhao, L.6
Marklund, J.7
Kuo, R.L.8
Twu, K.Y.9
Arnold, E.10
Krug, R.M.11
Montelione, G.T.12
-
30
-
-
84871881698
-
Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis
-
Thomas, P. E., Wu, X., Liu, M., Gaffney, B., Ji, G., Li, Q. Q., and Hunt, A. G. (2012) Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis Plant Cell 24, 4376-4388
-
(2012)
Plant Cell
, vol.24
, pp. 4376-4388
-
-
Thomas, P.E.1
Wu, X.2
Liu, M.3
Gaffney, B.4
Ji, G.5
Li, Q.Q.6
Hunt, A.G.7
-
31
-
-
34547851778
-
A novel endonuclease activity associated with the Arabidopsis ortholog of the 30-kD subunit of cleavage and polyadenylation specificity factor
-
Addepalli, B. and Hunt, A. G. (2007) A novel endonuclease activity associated with the Arabidopsis ortholog of the 30-kD subunit of cleavage and polyadenylation specificity factor Nucleic Acids Res. 35, 4453-4463
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4453-4463
-
-
Addepalli, B.1
Hunt, A.G.2
-
32
-
-
48849094496
-
A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana
-
Zhang, J., Addepalli, B., Yun, K. Y., Hunt, A. G., Xu, R., Rao, S., Li, Q. Q., and Falcone, D. L. (2008) A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana PLoS One 3, e2410
-
(2008)
PLoS One
, vol.3
, pp. 2410
-
-
Zhang, J.1
Addepalli, B.2
Yun, K.Y.3
Hunt, A.G.4
Xu, R.5
Rao, S.6
Li, Q.Q.7
Falcone, D.L.8
-
33
-
-
78049319919
-
A disulfide linkage in a CCCH zinc finger motif of an Arabidopsis CPSF30 ortholog
-
Addepalli, B., Limbach, P. A., and Hunt, A. G. (2010) A disulfide linkage in a CCCH zinc finger motif of an Arabidopsis CPSF30 ortholog FEBS Lett. 584, 4408-4412
-
(2010)
FEBS Lett.
, vol.584
, pp. 4408-4412
-
-
Addepalli, B.1
Limbach, P.A.2
Hunt, A.G.3
-
34
-
-
67749089601
-
Distinctive interactions of the Arabidopsis homolog of the 30 kD subunit of the cleavage and polyadenylation specificity factor (AtCPSF30) with other polyadenylation factor subunits
-
Rao, S., Dinkins, R. D., and Hunt, A. G. (2009) Distinctive interactions of the Arabidopsis homolog of the 30 kD subunit of the cleavage and polyadenylation specificity factor (AtCPSF30) with other polyadenylation factor subunits BMC Cell Biol. 10, 51
-
(2009)
BMC Cell Biol.
, vol.10
, pp. 51
-
-
Rao, S.1
Dinkins, R.D.2
Hunt, A.G.3
-
35
-
-
33947202065
-
Crystal structure of murine CstF-77: Dimeric association and implications for polyadenylation of mRNA precursors
-
Bai, Y., Auperin, T. C., Chou, C.-Y., Chang, G.-G., Manley, J. L., and Tong, L. (2007) Crystal structure of murine CstF-77: Dimeric association and implications for polyadenylation of mRNA precursors Mol. Cell 25, 863-875
-
(2007)
Mol. Cell
, vol.25
, pp. 863-875
-
-
Bai, Y.1
Auperin, T.C.2
Chou, C.-Y.3
Chang, G.-G.4
Manley, J.L.5
Tong, L.6
-
36
-
-
34547839747
-
The structure of CstF-77 homodimer provides insights into CstF assembly
-
Legrand, P., Pinaud, N., Minvielle-Sebastia, L., and Fribourg, S. (2007) The structure of CstF-77 homodimer provides insights into CstF assembly Nucleic Acids Res. 35, 4515-4522
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4515-4522
-
-
Legrand, P.1
Pinaud, N.2
Minvielle-Sebastia, L.3
Fribourg, S.4
-
37
-
-
84861374448
-
Crystal structure of the Rna14-Rna15 complex
-
Paulson, A. R. and Tong, L. (2012) Crystal structure of the Rna14-Rna15 complex RNA 18, 1154-1162
-
(2012)
RNA
, vol.18
, pp. 1154-1162
-
-
Paulson, A.R.1
Tong, L.2
-
38
-
-
81855190895
-
Reconstitution of CF IA from overexpressed subunits reveals stoichiometry and provides insights into molecular topology
-
Gordon, J. M. B., Shikov, S., Kuehner, J. N., Liriano, M., Lee, E., Stafford, W., Poulsen, M. B., Harrison, C., Moore, C., and Bohm, A. (2011) Reconstitution of CF IA from overexpressed subunits reveals stoichiometry and provides insights into molecular topology Biochemistry 50, 10203-10214
-
(2011)
Biochemistry
, vol.50
, pp. 10203-10214
-
-
Gordon, J.M.B.1
Shikov, S.2
Kuehner, J.N.3
Liriano, M.4
Lee, E.5
Stafford, W.6
Poulsen, M.B.7
Harrison, C.8
Moore, C.9
Bohm, A.10
-
39
-
-
79951536375
-
Hexameric architecture of CstF supported by CstF-50 homodimerization domain structure
-
Moreno-Morcillo, M., Minvielle-Sebastia, L., Mackereth, C., and Fribourg, S. (2011) Hexameric architecture of CstF supported by CstF-50 homodimerization domain structure RNA 17, 412-418
-
(2011)
RNA
, vol.17
, pp. 412-418
-
-
Moreno-Morcillo, M.1
Minvielle-Sebastia, L.2
Mackereth, C.3
Fribourg, S.4
-
40
-
-
79953878285
-
Locked tether formation by cooperative folding of Rna14p monkeytail and Rna15p hinge domains in the yeast CFIA complex
-
Moreno-Morcillo, M., Minvielle-Sebastia, L., Fribourg, S., and Mackereth, C. D. (2011) Locked tether formation by cooperative folding of Rna14p monkeytail and Rna15p hinge domains in the yeast CFIA complex Structure 19, 534-545
-
(2011)
Structure
, vol.19
, pp. 534-545
-
-
Moreno-Morcillo, M.1
Minvielle-Sebastia, L.2
Fribourg, S.3
Mackereth, C.D.4
-
41
-
-
73649107901
-
The hinge domain of the cleavage stimulation factor protein CstF-64 is essential for CstF-77 interaction, nuclear localization, and polyadenylation
-
Hockert, J. A., Yeh, H. J., and MacDonald, C. C. (2010) The hinge domain of the cleavage stimulation factor protein CstF-64 is essential for CstF-77 interaction, nuclear localization, and polyadenylation J. Biol. Chem. 285, 695-704
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 695-704
-
-
Hockert, J.A.1
Yeh, H.J.2
Macdonald, C.C.3
-
42
-
-
84880809596
-
The conserved intronic cleavage and polyadenylation site of CstF-77 gene imparts control of 3′ end processing activity through feedback autoregulation and by U1 snRNP
-
Luo, W., Ji, Z., Pan, Z., You, B., Hoque, M., Li, W., Gunderson, S. I., and Tian, B. (2013) The conserved intronic cleavage and polyadenylation site of CstF-77 gene imparts control of 3′ end processing activity through feedback autoregulation and by U1 snRNP PLoS Genet. 9, e1003613
-
(2013)
PLoS Genet.
, vol.9
, pp. 1003613
-
-
Luo, W.1
Ji, Z.2
Pan, Z.3
You, B.4
Hoque, M.5
Li, W.6
Gunderson, S.I.7
Tian, B.8
-
43
-
-
77955273066
-
Novel protein-protein contacts faciliate mRNA 3′-processing signal recognition by Rna15 and Hrp1
-
Leeper, T. C., Qu, X., Lu, C., Moore, C., and Varani, G. (2010) Novel protein-protein contacts faciliate mRNA 3′-processing signal recognition by Rna15 and Hrp1 J. Mol. Biol. 401, 334-349
-
(2010)
J. Mol. Biol.
, vol.401
, pp. 334-349
-
-
Leeper, T.C.1
Qu, X.2
Lu, C.3
Moore, C.4
Varani, G.5
-
44
-
-
77953261028
-
Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3′-end processing factors
-
Pancevac, C., Goldstone, D. C., Ramos, A., and Taylor, I. A. (2010) Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3′-end processing factors Nucleic Acids Res. 38, 3119-3132
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3119-3132
-
-
Pancevac, C.1
Goldstone, D.C.2
Ramos, A.3
Taylor, I.A.4
-
45
-
-
84871832908
-
Structural and functional analysis of the assembly and function of the yeast pre-mRNA 3′ end processing complex CF i
-
Barnwal, R. P., Lee, S. D., Moore, C., and Varani, G. (2012) Structural and functional analysis of the assembly and function of the yeast pre-mRNA 3′ end processing complex CF I Proc. Natl. Acad. Sci. U.S.A. 109, 21342-21347
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 21342-21347
-
-
Barnwal, R.P.1
Lee, S.D.2
Moore, C.3
Varani, G.4
-
46
-
-
84860167953
-
Structure of Musashi1 in a complex with target RNA: The role of aromatic stacking interactions
-
Ohyama, T., Nagata, T., Tsuda, K., Kobayashi, N., Imai, T., Okano, H., Yamazaki, T., and Katahira, M. (2012) Structure of Musashi1 in a complex with target RNA: The role of aromatic stacking interactions Nucleic Acids Res. 40, 3218-3231
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 3218-3231
-
-
Ohyama, T.1
Nagata, T.2
Tsuda, K.3
Kobayashi, N.4
Imai, T.5
Okano, H.6
Yamazaki, T.7
Katahira, M.8
-
47
-
-
84888400492
-
Overlapping and distinct functions of CstF64 and CstF64tau in mammalian mRNA 3′ processing
-
Yao, C., Choi, E. A., Weng, L., Xie, X., Wan, J., Xing, Y., Moresco, J. J., Tu, P. G., Yates, J. R., III, and Shi, Y. (2013) Overlapping and distinct functions of CstF64 and CstF64tau in mammalian mRNA 3′ processing RNA 19, 1781-1790
-
(2013)
RNA
, vol.19
, pp. 1781-1790
-
-
Yao, C.1
Choi, E.A.2
Weng, L.3
Xie, X.4
Wan, J.5
Xing, Y.6
Moresco, J.J.7
Tu, P.G.8
Yates III, J.R.9
Shi, Y.10
-
48
-
-
84883775020
-
Polyadenylation site-specific differences in the activity of the neuronal bCstF-64 protein in PC-12 cells
-
Shankarling, G. S. and MacDonald, C. C. (2013) Polyadenylation site-specific differences in the activity of the neuronal bCstF-64 protein in PC-12 cells Gene 529, 220-227
-
(2013)
Gene
, vol.529
, pp. 220-227
-
-
Shankarling, G.S.1
Macdonald, C.C.2
-
49
-
-
84863093884
-
Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor i in the regulation of 3′ UTR length
-
Martin, G., Gruber, A. R., Keller, W., and Zavolan, M. (2012) Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor I in the regulation of 3′ UTR length Cell Rep. 1, 753-763
-
(2012)
Cell Rep.
, vol.1
, pp. 753-763
-
-
Martin, G.1
Gruber, A.R.2
Keller, W.3
Zavolan, M.4
-
50
-
-
45549083224
-
Crystal structure of the 25 kDa subunit of human cleavage factor im
-
Coseno, M., Martin, G., Berger, C., Gilmartin, G. M., Keller, W., and Doublie, S. (2008) Crystal structure of the 25 kDa subunit of human cleavage factor Im Nucleic Acids Res. 36, 3474-3483
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3474-3483
-
-
Coseno, M.1
Martin, G.2
Berger, C.3
Gilmartin, G.M.4
Keller, W.5
Doublie, S.6
-
51
-
-
58149311440
-
The crystal structure of human cleavage and polyadenylation specific factor-5 reveals a dimeric Nudix protein with a conserved catalytic site
-
Tresaugues, L., Stenmark, P., Schuler, H., Flodin, S., Welin, M., Nyman, T., Hammarstrom, M., Moche, M., Graslund, S., and Nordlund, P. (2008) The crystal structure of human cleavage and polyadenylation specific factor-5 reveals a dimeric Nudix protein with a conserved catalytic site Proteins 73, 1047-1052
-
(2008)
Proteins
, vol.73
, pp. 1047-1052
-
-
Tresaugues, L.1
Stenmark, P.2
Schuler, H.3
Flodin, S.4
Welin, M.5
Nyman, T.6
Hammarstrom, M.7
Moche, M.8
Graslund, S.9
Nordlund, P.10
-
52
-
-
77953454014
-
Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3′ processing
-
Yang, Q., Gilmartin, G. M., and Doublie, S. (2010) Structural basis of UGUA recognition by the Nudix protein CFI(m)25 and implications for a regulatory role in mRNA 3′ processing Proc. Natl. Acad. Sci. U.S.A. 107, 10062-10067
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 10062-10067
-
-
Yang, Q.1
Gilmartin, G.M.2
Doublie, S.3
-
53
-
-
79952459288
-
Crystal structure of a human cleavage factor CFI(m)25/CFI(m)68/RNA complex provides an insight into poly(A) site recognition and RNA looping
-
Yang, Q., Coseno, M., Gilmartin, G. M., and Doublie, S. (2011) Crystal structure of a human cleavage factor CFI(m)25/CFI(m)68/RNA complex provides an insight into poly(A) site recognition and RNA looping Structure 19, 368-377
-
(2011)
Structure
, vol.19
, pp. 368-377
-
-
Yang, Q.1
Coseno, M.2
Gilmartin, G.M.3
Doublie, S.4
-
54
-
-
79960138153
-
Structural basis of pre-mRNA recognition by the human cleavage factor im complex
-
Li, H., Tong, S., Li, X., Shi, H., Ying, Z., Gao, Y., Ge, H., Niu, L., and Teng, M. (2011) Structural basis of pre-mRNA recognition by the human cleavage factor Im complex Cell Res. 21, 1039-1051
-
(2011)
Cell Res.
, vol.21
, pp. 1039-1051
-
-
Li, H.1
Tong, S.2
Li, X.3
Shi, H.4
Ying, Z.5
Gao, Y.6
Ge, H.7
Niu, L.8
Teng, M.9
-
55
-
-
77955948497
-
Evidence that cleavage factor im is a heterotetrameric protein complex controlling alternative polyadenylation
-
Kim, S., Yamamoto, J., Chen, Y., Aida, M., Wada, T., Handa, H., and Yamaguchi, H. (2010) Evidence that cleavage factor Im is a heterotetrameric protein complex controlling alternative polyadenylation Genes Cells 15, 1003-1013
-
(2010)
Genes Cells
, vol.15
, pp. 1003-1013
-
-
Kim, S.1
Yamamoto, J.2
Chen, Y.3
Aida, M.4
Wada, T.5
Handa, H.6
Yamaguchi, H.7
-
56
-
-
84875175052
-
Cleavage factor im is a key regulator of 3′ UTR length
-
Gruber, A. R., Martin, G., Keller, W., and Zavolan, M. (2012) Cleavage factor Im is a key regulator of 3′ UTR length RNA Biol. 9, 1405-1412
-
(2012)
RNA Biol.
, vol.9
, pp. 1405-1412
-
-
Gruber, A.R.1
Martin, G.2
Keller, W.3
Zavolan, M.4
-
57
-
-
79952484876
-
MRNA 3′ end processing and more-multiple functions of mammalian cleavage factor I-68
-
Ruepp, M. D., Schumperli, D., and Barabino, S. M. L. (2011) mRNA 3′ end processing and more-multiple functions of mammalian cleavage factor I-68 Wiley Interdiscip. Rev.: RNA 2, 79-91
-
(2011)
Wiley Interdiscip. Rev.: RNA
, vol.2
, pp. 79-91
-
-
Ruepp, M.D.1
Schumperli, D.2
Barabino, S.M.L.3
-
58
-
-
73849115741
-
Mammalian pre-mRNA 3′ end processing factor CF i m 68 functions in mRNA export
-
Ruepp, M. D., Aringhieri, C., Vivarelli, S., Cardinale, S., Paro, S., Schumperli, D., and Barabino, S. M. L. (2009) Mammalian pre-mRNA 3′ end processing factor CF I m 68 functions in mRNA export Mol. Biol. Cell 20, 5211-5223
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 5211-5223
-
-
Ruepp, M.D.1
Aringhieri, C.2
Vivarelli, S.3
Cardinale, S.4
Paro, S.5
Schumperli, D.6
Barabino, S.M.L.7
-
59
-
-
84880824954
-
Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor i
-
Katahira, J., Okuzaki, D., Inoue, H., Yoneda, Y., Maehara, K., and Ohkawa, Y. (2013) Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I Nucleic Acids Res. 41, 7060-7072
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 7060-7072
-
-
Katahira, J.1
Okuzaki, D.2
Inoue, H.3
Yoneda, Y.4
Maehara, K.5
Ohkawa, Y.6
-
60
-
-
77749342887
-
Flexible use of nuclear import pathways by HIV-1
-
Lee, K. E., Ambrose, Z., Martin, T. D., Oztop, I., Mulky, A., Julias, J. G., Vandegraaff, N., Baumann, J. G., Wang, R., Yuen, W., Takemura, T., Shelton, K., Taniuchi, I., Li, Y., Sodroski, J., Littman, D. R., Coffin, J. M., Hughes, S. H., Unutmaz, D., Engelman, A., and KewalRamani, V. N. (2010) Flexible use of nuclear import pathways by HIV-1 Cell Host Microbe 7, 221-233
-
(2010)
Cell Host Microbe
, vol.7
, pp. 221-233
-
-
Lee, K.E.1
Ambrose, Z.2
Martin, T.D.3
Oztop, I.4
Mulky, A.5
Julias, J.G.6
Vandegraaff, N.7
Baumann, J.G.8
Wang, R.9
Yuen, W.10
Takemura, T.11
Shelton, K.12
Taniuchi, I.13
Li, Y.14
Sodroski, J.15
Littman, D.R.16
Coffin, J.M.17
Hughes, S.H.18
Unutmaz, D.19
Engelman, A.20
Kewalramani, V.N.21
more..
-
61
-
-
84888054227
-
HIV-1 evades innate immune recognition through specific cofactor recruitment
-
Rasaiyaah, J., Tan, C. P., Fletcher, A. J., Price, A. J., Blondeau, C., Hilditch, L., Jacques, D. A., Selwood, D. L., James, L. C., Noursadeghi, M., and Towers, G. J. (2013) HIV-1 evades innate immune recognition through specific cofactor recruitment Nature 503, 402-405
-
(2013)
Nature
, vol.503
, pp. 402-405
-
-
Rasaiyaah, J.1
Tan, C.P.2
Fletcher, A.J.3
Price, A.J.4
Blondeau, C.5
Hilditch, L.6
Jacques, D.A.7
Selwood, D.L.8
James, L.C.9
Noursadeghi, M.10
Towers, G.J.11
-
62
-
-
84880348270
-
A carboxy-terminally truncated human CPSF6 lacking residues encoded by exon 6 inhibits HIV-1 cDNA synthesis and promotes capsid disassembly
-
Hori, T., Takeuchi, H., Saito, H., Sakuma, R., Inagaki, Y., and Yamaoka, S. (2013) A carboxy-terminally truncated human CPSF6 lacking residues encoded by exon 6 inhibits HIV-1 cDNA synthesis and promotes capsid disassembly J. Virol. 87, 7726-7736
-
(2013)
J. Virol.
, vol.87
, pp. 7726-7736
-
-
Hori, T.1
Takeuchi, H.2
Saito, H.3
Sakuma, R.4
Inagaki, Y.5
Yamaoka, S.6
-
63
-
-
33846688769
-
Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor
-
Noble, C. G., Beuth, B., and Taylor, I. A. (2007) Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor Nucleic Acids Res. 35, 87-99
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 87-99
-
-
Noble, C.G.1
Beuth, B.2
Taylor, I.A.3
-
64
-
-
84856845697
-
An essential role for Clp1 in assembly of polyadenylation complex CF IA and Pol II transcription termination
-
Haddad, R., Maurice, F., Viphakone, N., Voisinet-Hakil, F., Fribourg, S., and Minvielle-Sebastia, L. (2012) An essential role for Clp1 in assembly of polyadenylation complex CF IA and Pol II transcription termination Nucleic Acids Res. 40, 1226-1239
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1226-1239
-
-
Haddad, R.1
Maurice, F.2
Viphakone, N.3
Voisinet-Hakil, F.4
Fribourg, S.5
Minvielle-Sebastia, L.6
-
65
-
-
84863182811
-
The interaction of Pcf11 and Clp1 is needed for mRNA 3′-end formation and is modulated by amino acids in the ATP-binding site
-
Ghazy, M. A., Gordon, J. M. B., Lee, S. D., Singh, B. N., Bohm, A., Hampsey, M., and Moore, C. (2012) The interaction of Pcf11 and Clp1 is needed for mRNA 3′-end formation and is modulated by amino acids in the ATP-binding site Nucleic Acids Res. 40, 1214-1225
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1214-1225
-
-
Ghazy, M.A.1
Gordon, J.M.B.2
Lee, S.D.3
Singh, B.N.4
Bohm, A.5
Hampsey, M.6
Moore, C.7
-
66
-
-
34248563036
-
The human RNA kinase hClp1 is active on 3′ transfer RNA exons and short interfering RNAs
-
Weitzer, S. and Martinez, J. (2007) The human RNA kinase hClp1 is active on 3′ transfer RNA exons and short interfering RNAs Nature 447, 222-226
-
(2007)
Nature
, vol.447
, pp. 222-226
-
-
Weitzer, S.1
Martinez, J.2
-
67
-
-
50649088948
-
Human RNA 5′-kinase (hClp1) can function as a tRNA splicing enzyme in vivo
-
Ramirez, A., Shuman, S., and Schwer, B. (2008) Human RNA 5′-kinase (hClp1) can function as a tRNA splicing enzyme in vivo RNA 14, 1737-1745
-
(2008)
RNA
, vol.14
, pp. 1737-1745
-
-
Ramirez, A.1
Shuman, S.2
Schwer, B.3
-
68
-
-
84875623194
-
CLP1 links tRNA metabolism to progressive motor-neuron loss
-
Hanada, T., Weitzer, S., Mair, B., Bernreuther, C., Wainger, B. J., Ichida, J., Hanada, R., Orthofer, M., Cronin, S. J., Komnenovic, V., Minis, A., Sato, F., Mimata, H., Yoshimura, A., Tamir, I., Rainer, J., Kofler, R., Yaron, A., Eggan, K. C., Woolf, C. J., Glatzel, M., Herbst, R., Martinez, J., and Penninger, J. M. (2013) CLP1 links tRNA metabolism to progressive motor-neuron loss Nature 495, 474-480
-
(2013)
Nature
, vol.495
, pp. 474-480
-
-
Hanada, T.1
Weitzer, S.2
Mair, B.3
Bernreuther, C.4
Wainger, B.J.5
Ichida, J.6
Hanada, R.7
Orthofer, M.8
Cronin, S.J.9
Komnenovic, V.10
Minis, A.11
Sato, F.12
Mimata, H.13
Yoshimura, A.14
Tamir, I.15
Rainer, J.16
Kofler, R.17
Yaron, A.18
Eggan, K.C.19
Woolf, C.J.20
Glatzel, M.21
Herbst, R.22
Martinez, J.23
Penninger, J.M.24
more..
-
69
-
-
84055216962
-
The P-loop domain of yeast Clp1 mediates interactions between CF IA and CPF factors in pre-mRNA 3′ end formation
-
Holbein, S., Scola, S., Loll, B., Dichtl, B. S., Hubner, W., Meinhart, A., and Dichtl, B. (2011) The P-loop domain of yeast Clp1 mediates interactions between CF IA and CPF factors in pre-mRNA 3′ end formation PLoS One 6, e29139
-
(2011)
PLoS One
, vol.6
, pp. 29139
-
-
Holbein, S.1
Scola, S.2
Loll, B.3
Dichtl, B.S.4
Hubner, W.5
Meinhart, A.6
Dichtl, B.7
-
70
-
-
58649121693
-
Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 3′ end processing factor Pcf11
-
Johnson, S. A., Cubberley, G., and Bentley, D. L. (2009) Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 3′ end processing factor Pcf11 Mol. Cell 33, 215-226
-
(2009)
Mol. Cell
, vol.33
, pp. 215-226
-
-
Johnson, S.A.1
Cubberley, G.2
Bentley, D.L.3
-
71
-
-
80455177038
-
The export factor Yra1 moduates mRNA 3′ end processing
-
Johnson, S. A., Kim, H., Erickson, B., and Bentley, D. L. (2011) The export factor Yra1 moduates mRNA 3′ end processing Nat. Struct. Mol. Biol. 18, 1164-1171
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 1164-1171
-
-
Johnson, S.A.1
Kim, H.2
Erickson, B.3
Bentley, D.L.4
-
72
-
-
69249151288
-
Poly(A) tail length is controlled by the nuclear poly(A)-binding protein regulating the interaction between poly(A) polymerase and the cleavage and polyadenylation specificity factor
-
Kuhn, U., Gundel, M., Knoth, A., Kerwitz, Y., Rudel, S., and Wahle, E. (2009) Poly(A) tail length is controlled by the nuclear poly(A)-binding protein regulating the interaction between poly(A) polymerase and the cleavage and polyadenylation specificity factor J. Biol. Chem. 284, 22803-22814
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 22803-22814
-
-
Kuhn, U.1
Gundel, M.2
Knoth, A.3
Kerwitz, Y.4
Rudel, S.5
Wahle, E.6
-
73
-
-
84887290020
-
The human nuclear poly(A)-binding protein promotes RNA hyperadenylation and decay
-
Bresson, S. M. and Conrad, N. K. (2013) The human nuclear poly(A)-binding protein promotes RNA hyperadenylation and decay PLoS Genet. 9, e1003893
-
(2013)
PLoS Genet.
, vol.9
, pp. 1003893
-
-
Bresson, S.M.1
Conrad, N.K.2
-
74
-
-
84890860107
-
Crystal structure of human poly(A) polymerase γ reveals a conserved catalytic core for canonical poly(A) polymerase
-
Yang, Q., Nausch, L. W., Martin, G., Keller, W., and Doublie, S. (2014) Crystal structure of human poly(A) polymerase γ reveals a conserved catalytic core for canonical poly(A) polymerase J. Mol. Biol. 426, 43-50
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 43-50
-
-
Yang, Q.1
Nausch, L.W.2
Martin, G.3
Keller, W.4
Doublie, S.5
-
75
-
-
78650433004
-
Polyadenylation and beyond: Emerging roles for noncanonical poly(A) polymerases
-
Schmidt, H. and Norbury, C. J. (2010) Polyadenylation and beyond: Emerging roles for noncanonical poly(A) polymerases Wiley Interdiscip. Rev.: RNA 1, 142-151
-
(2010)
Wiley Interdiscip. Rev.: RNA
, vol.1
, pp. 142-151
-
-
Schmidt, H.1
Norbury, C.J.2
-
76
-
-
84864295706
-
Mitochondrial poly(A) polymerase and polyadenylation
-
Chang, J. H. and Tong, L. (2012) Mitochondrial poly(A) polymerase and polyadenylation Biochim. Biophys. Acta 1819, 992-997
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 992-997
-
-
Chang, J.H.1
Tong, L.2
-
77
-
-
79251554375
-
Structural basis for dimerization and activity of human PAPD1, a noncanonical poly(A) polymerase
-
Bai, Y., Srivastava, S. K., Chang, J. H., Manley, J. L., and Tong, L. (2011) Structural basis for dimerization and activity of human PAPD1, a noncanonical poly(A) polymerase Mol. Cell 41, 311-320
-
(2011)
Mol. Cell
, vol.41
, pp. 311-320
-
-
Bai, Y.1
Srivastava, S.K.2
Chang, J.H.3
Manley, J.L.4
Tong, L.5
-
78
-
-
79960930856
-
Cytoplasmic polyadenylation and translational control
-
Villalba, A., Coll, O., and Gebauer, F. (2011) Cytoplasmic polyadenylation and translational control Curr. Opin. Genet. Dev. 21, 452-457
-
(2011)
Curr. Opin. Genet. Dev.
, vol.21
, pp. 452-457
-
-
Villalba, A.1
Coll, O.2
Gebauer, F.3
-
79
-
-
84879161085
-
Specificity factors in cytoplasmic polyadenylation
-
Charlesworth, A., Meijer, H. A., and de Moor, C. H. (2013) Specificity factors in cytoplasmic polyadenylation Wiley Interdiscip. Rev.: RNA 4, 437-461
-
(2013)
Wiley Interdiscip. Rev.: RNA
, vol.4
, pp. 437-461
-
-
Charlesworth, A.1
Meijer, H.A.2
De Moor, C.H.3
-
80
-
-
84864311586
-
Bidirectional control of mRNA translation and synaptic plasticity by the cytoplasmic polyadenylation complex
-
Udagawa, T., Swanger, S. A., Takeuchi, K., Kim, J. H., Nalavadi, V., Shin, J., Lorenz, L. J., Zukin, R. S., Bassell, G. J., and Richter, J. D. (2012) Bidirectional control of mRNA translation and synaptic plasticity by the cytoplasmic polyadenylation complex Mol. Cell 47, 253-266
-
(2012)
Mol. Cell
, vol.47
, pp. 253-266
-
-
Udagawa, T.1
Swanger, S.A.2
Takeuchi, K.3
Kim, J.H.4
Nalavadi, V.5
Shin, J.6
Lorenz, L.J.7
Zukin, R.S.8
Bassell, G.J.9
Richter, J.D.10
-
81
-
-
52249104915
-
Sustained CPEB-dependent local protein synthesis is required to stabilize synaptic growth for persistence of long-term facilitation in Aplysia
-
Miniaci, M. C., Kim, J. H., Puthanveettil, S. V., Si, K., Zhu, H., Kandel, E. R., and Bailey, C. H. (2008) Sustained CPEB-dependent local protein synthesis is required to stabilize synaptic growth for persistence of long-term facilitation in Aplysia Neuron 59, 1024-1036
-
(2008)
Neuron
, vol.59
, pp. 1024-1036
-
-
Miniaci, M.C.1
Kim, J.H.2
Puthanveettil, S.V.3
Si, K.4
Zhu, H.5
Kandel, E.R.6
Bailey, C.H.7
-
82
-
-
75749134925
-
Aplysia CPEB can form prion-like multimers in sensory neurons that contribute to long-term facilitation
-
Si, K., Choi, Y. B., White-Grindley, E., Majumdar, A., and Kandel, E. R. (2010) Aplysia CPEB can form prion-like multimers in sensory neurons that contribute to long-term facilitation Cell 140, 421-435
-
(2010)
Cell
, vol.140
, pp. 421-435
-
-
Si, K.1
Choi, Y.B.2
White-Grindley, E.3
Majumdar, A.4
Kandel, E.R.5
-
83
-
-
79955599925
-
CPEB and two poly(A) polymerases control miR-122 stability and p53 mRNA translation
-
Burns, D. M., DAmbrogio, A., Nottrott, S., and Richter, J. D. (2011) CPEB and two poly(A) polymerases control miR-122 stability and p53 mRNA translation Nature 473, 105-108
-
(2011)
Nature
, vol.473
, pp. 105-108
-
-
Burns, D.M.1
Dambrogio, A.2
Nottrott, S.3
Richter, J.D.4
-
84
-
-
80054115893
-
Involvement of hGLD-2 in cytoplasmic polyadenylation of human p53 mRNA
-
Glahder, J. A. and Norrild, B. (2011) Involvement of hGLD-2 in cytoplasmic polyadenylation of human p53 mRNA APMIS 119, 769-775
-
(2011)
APMIS
, vol.119
, pp. 769-775
-
-
Glahder, J.A.1
Norrild, B.2
-
85
-
-
77956671163
-
Cytoplasmic polyadenylation element binding protein is a conserved target of tumor suppressor HRPT2/CDC73
-
Zhang, J. H., Panicker, L. M., Seigneur, E. M., Lin, L., House, C. D., Morgan, W., Chen, W. C., Mehta, H., Haj-Ali, M., Yu, Z. X., and Simonds, W. F. (2010) Cytoplasmic polyadenylation element binding protein is a conserved target of tumor suppressor HRPT2/CDC73 Cell Death Differ. 17, 1551-1565
-
(2010)
Cell Death Differ.
, vol.17
, pp. 1551-1565
-
-
Zhang, J.H.1
Panicker, L.M.2
Seigneur, E.M.3
Lin, L.4
House, C.D.5
Morgan, W.6
Chen, W.C.7
Mehta, H.8
Haj-Ali, M.9
Yu, Z.X.10
Simonds, W.F.11
-
86
-
-
84877723134
-
The C-terminal region of cytoplasmic polyadenylation element binding protein is a ZZ domain with potential for protein-protein interactions
-
Merkel, D. J., Wells, S. B., Hilburn, B. C., Elazzouzi, F., Perez-Alvarado, G. C., and Lee, B. M. (2013) The C-terminal region of cytoplasmic polyadenylation element binding protein is a ZZ domain with potential for protein-protein interactions J. Mol. Biol. 425, 2015-2026
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 2015-2026
-
-
Merkel, D.J.1
Wells, S.B.2
Hilburn, B.C.3
Elazzouzi, F.4
Perez-Alvarado, G.C.5
Lee, B.M.6
-
87
-
-
64649086745
-
The essential N terminus of the Pta1 scaffold protein is required for snoRNA transcription termination and Ssu72 function but is dispensible for pre-mRNA 3′-end processing
-
Ghazy, M. A., He, X., Singh, B. N., Hampsey, M., and Moore, C. (2009) The essential N terminus of the Pta1 scaffold protein is required for snoRNA transcription termination and Ssu72 function but is dispensible for pre-mRNA 3′-end processing Mol. Cell. Biol. 29, 2296-2307
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 2296-2307
-
-
Ghazy, M.A.1
He, X.2
Singh, B.N.3
Hampsey, M.4
Moore, C.5
-
88
-
-
77958018260
-
Crystal structure of the human symplekin-Ssu72-CTD phosphopeptide complex
-
Xiang, K., Nagaike, T., Xiang, S., Kilic, T., Beh, M. M., Manley, J. L., and Tong, L. (2010) Crystal structure of the human symplekin-Ssu72-CTD phosphopeptide complex Nature 467, 729-733
-
(2010)
Nature
, vol.467
, pp. 729-733
-
-
Xiang, K.1
Nagaike, T.2
Xiang, S.3
Kilic, T.4
Beh, M.M.5
Manley, J.L.6
Tong, L.7
-
89
-
-
78651105864
-
Interactions of CstF-64, CstF-77, and symplekin: Implications on localisation and function
-
Ruepp, M. D., Schweingruber, C., Kleinschmidt, N., and Schumperli, D. (2011) Interactions of CstF-64, CstF-77, and symplekin: Implications on localisation and function Mol. Biol. Cell 22, 91-104
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 91-104
-
-
Ruepp, M.D.1
Schweingruber, C.2
Kleinschmidt, N.3
Schumperli, D.4
-
90
-
-
79954548898
-
Control of eukaryotic gene expression: Gene loops and transcriptional memory
-
Hampsey, M., Singh, B. N., Ansari, A., Laine, J. P., and Krishnamurthy, S. (2011) Control of eukaryotic gene expression: Gene loops and transcriptional memory Adv. Enzyme Regul. 51, 118-125
-
(2011)
Adv. Enzyme Regul.
, vol.51
, pp. 118-125
-
-
Hampsey, M.1
Singh, B.N.2
Ansari, A.3
Laine, J.P.4
Krishnamurthy, S.5
-
91
-
-
84868193627
-
Gene loops enhance transcriptional directionality
-
Tan-Wong, S. M., Zaugg, J. B., Camblong, J., Xu, Z., Zhang, D. W., Mischo, H. E., Ansari, A. Z., Luscombe, N. M., Steinmetz, L. M., and Proudfoot, N. J. (2012) Gene loops enhance transcriptional directionality Science 338, 671-675
-
(2012)
Science
, vol.338
, pp. 671-675
-
-
Tan-Wong, S.M.1
Zaugg, J.B.2
Camblong, J.3
Xu, Z.4
Zhang, D.W.5
Mischo, H.E.6
Ansari, A.Z.7
Luscombe, N.M.8
Steinmetz, L.M.9
Proudfoot, N.J.10
-
92
-
-
70449641057
-
Progression through the RNA polymerase II CTD cycle
-
Buratowski, S. (2009) Progression through the RNA polymerase II CTD cycle Mol. Cell 36, 541-546
-
(2009)
Mol. Cell
, vol.36
, pp. 541-546
-
-
Buratowski, S.1
-
93
-
-
77957786100
-
Gene-specific RNA polymerase II phosphorylation and the CTD code
-
Kim, H., Erickson, B., Luo, W., Seward, D., Graber, J. H., Pollock, D. D., Megee, P. C., and Bentley, D. L. (2010) Gene-specific RNA polymerase II phosphorylation and the CTD code Nat. Struct. Mol. Biol. 17, 1279-1286
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1279-1286
-
-
Kim, H.1
Erickson, B.2
Luo, W.3
Seward, D.4
Graber, J.H.5
Pollock, D.D.6
Megee, P.C.7
Bentley, D.L.8
-
94
-
-
84862977456
-
CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II
-
Mayer, A., Heidemann, M., Lidschreiber, M., Schreieck, A., Sun, M., Hintermair, C., Kremmer, E., Eick, D., and Cramer, P. (2012) CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II Science 336, 1723-1725
-
(2012)
Science
, vol.336
, pp. 1723-1725
-
-
Mayer, A.1
Heidemann, M.2
Lidschreiber, M.3
Schreieck, A.4
Sun, M.5
Hintermair, C.6
Kremmer, E.7
Eick, D.8
Cramer, P.9
-
95
-
-
84856273602
-
A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes
-
Bataille, A. R., Jeronimo, C., Jacques, P.-E., Laramee, L., Fortin, M.-E., Forest, A., Bergeron, M., Hanes, S. D., and Robert, F. (2012) A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes Mol. Cell 45, 158-170
-
(2012)
Mol. Cell
, vol.45
, pp. 158-170
-
-
Bataille, A.R.1
Jeronimo, C.2
Jacques, P.-E.3
Laramee, L.4
Fortin, M.-E.5
Forest, A.6
Bergeron, M.7
Hanes, S.D.8
Robert, F.9
-
96
-
-
84863229897
-
Ssu72 phosphatase dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination
-
Zhang, D. W., Mosley, A. L., Ramisetty, S. R., Rodriguez-Molina, J. B., Washburn, M. P., and Ansari, A. Z. (2012) Ssu72 phosphatase dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination J. Biol. Chem. 287, 8541-8551
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 8541-8551
-
-
Zhang, D.W.1
Mosley, A.L.2
Ramisetty, S.R.3
Rodriguez-Molina, J.B.4
Washburn, M.P.5
Ansari, A.Z.6
-
97
-
-
84884621009
-
Novel modifications on C-terminal domain of RNA polymerase II can fine-tune the phosphatase activity of Ssu72
-
Luo, Y., Yogesha, S. D., Cannon, J. R., Yan, W., Ellington, A. D., Brodbelt, J. S., and Zhang, Y. (2013) Novel modifications on C-terminal domain of RNA polymerase II can fine-tune the phosphatase activity of Ssu72 ACS Chem. Biol. 8, 2042-2052
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 2042-2052
-
-
Luo, Y.1
Yogesha, S.D.2
Cannon, J.R.3
Yan, W.4
Ellington, A.D.5
Brodbelt, J.S.6
Zhang, Y.7
-
98
-
-
79953127123
-
Cis-Proline-mediated Ser(P)5 dephosphorylation by the RNA polymerase II C-terminal domain phosphatase Ssu72
-
Werner-Allen, J. W., Lee, C.-J., Liu, P., Nicely, N. I., Wang, S., Greenleaf, A. L., and Zhou, P. (2011) cis-Proline-mediated Ser(P)5 dephosphorylation by the RNA polymerase II C-terminal domain phosphatase Ssu72 J. Biol. Chem. 286, 5717-5726
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 5717-5726
-
-
Werner-Allen, J.W.1
Lee, C.-J.2
Liu, P.3
Nicely, N.I.4
Wang, S.5
Greenleaf, A.L.6
Zhou, P.7
-
99
-
-
84867726973
-
An unexpected binding mode for a Pol II CTD peptide phosphorylated at Ser7 in the active site of the CTD phosphatase Ssu72
-
Xiang, K., Manley, J. L., and Tong, L. (2012) An unexpected binding mode for a Pol II CTD peptide phosphorylated at Ser7 in the active site of the CTD phosphatase Ssu72 Genes Dev. 26, 2265-2270
-
(2012)
Genes Dev.
, vol.26
, pp. 2265-2270
-
-
Xiang, K.1
Manley, J.L.2
Tong, L.3
-
100
-
-
27144544622
-
Assembly of variant histones into chromatin
-
Henikoff, S. and Ahmad, K. (2005) Assembly of variant histones into chromatin Annu. Rev. Cell Dev. Biol. 21, 133-153
-
(2005)
Annu. Rev. Cell Dev. Biol.
, vol.21
, pp. 133-153
-
-
Henikoff, S.1
Ahmad, K.2
-
101
-
-
34250653243
-
Formation of the 3′ end of histone mRNA: Getting closer to the end
-
Dominski, Z. and Marzluff, W. F. (2007) Formation of the 3′ end of histone mRNA: Getting closer to the end Gene 396, 373-390
-
(2007)
Gene
, vol.396
, pp. 373-390
-
-
Dominski, Z.1
Marzluff, W.F.2
-
102
-
-
54149091257
-
Metabolism and regulation of canonical histone mRNAs: Life without a poly(A) tail
-
Marzluff, W. F., Wagner, E. J., and Duronio, R. J. (2008) Metabolism and regulation of canonical histone mRNAs: Life without a poly(A) tail Nat. Rev. Genet. 9, 843-854
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 843-854
-
-
Marzluff, W.F.1
Wagner, E.J.2
Duronio, R.J.3
-
103
-
-
38049085313
-
Early evolution of histone mRNA 3′ end processing
-
Lopez, M. D. and Samuelsson, T. (2008) Early evolution of histone mRNA 3′ end processing RNA 14, 1-10
-
(2008)
RNA
, vol.14
, pp. 1-10
-
-
Lopez, M.D.1
Samuelsson, T.2
-
104
-
-
84870845464
-
Systematic reconstruction of RNA functional motifs with high-throughput microfluidics
-
Martin, L., Meier, M., Lyons, S. M., Sit, R. V., Marzluff, W. F., Quake, S. R., and Chang, H. Y. (2012) Systematic reconstruction of RNA functional motifs with high-throughput microfluidics Nat. Methods 9, 1192-1195
-
(2012)
Nat. Methods
, vol.9
, pp. 1192-1195
-
-
Martin, L.1
Meier, M.2
Lyons, S.M.3
Sit, R.V.4
Marzluff, W.F.5
Quake, S.R.6
Chang, H.Y.7
-
105
-
-
38549117402
-
SLIP1, a factor required for activation of histone mRNA translation by the stem-loop binding protein
-
Cakmakci, N. G., Lerner, R. S., Wagner, E. J., Zheng, L., and Marzluff, W. F. (2008) SLIP1, a factor required for activation of histone mRNA translation by the stem-loop binding protein Mol. Cell. Biol. 28, 1182-1194
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 1182-1194
-
-
Cakmakci, N.G.1
Lerner, R.S.2
Wagner, E.J.3
Zheng, L.4
Marzluff, W.F.5
-
106
-
-
84884849501
-
Structural and biochemical studies of SLIP1-SLBP identify DBP5 and eIF3g as SLIP1-binding proteins
-
von Moeller, H., Lerner, R., Ricciardi, A., Basquin, C., Marzluff, W. F., and Conti, E. (2013) Structural and biochemical studies of SLIP1-SLBP identify DBP5 and eIF3g as SLIP1-binding proteins Nucleic Acids Res. 41, 7960-7971
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 7960-7971
-
-
Von Moeller, H.1
Lerner, R.2
Ricciardi, A.3
Basquin, C.4
Marzluff, W.F.5
Conti, E.6
-
107
-
-
47049128024
-
Phosphorylation of threonine 61 by cyclin A/Cdk1 triggers degradation of stem-loop binding protein at the end of S phase
-
Koseoglu, M. M., Graves, L. M., and Marzluff, W. F. (2008) Phosphorylation of threonine 61 by cyclin A/Cdk1 triggers degradation of stem-loop binding protein at the end of S phase Mol. Cell. Biol. 28, 4469-4479
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 4469-4479
-
-
Koseoglu, M.M.1
Graves, L.M.2
Marzluff, W.F.3
-
108
-
-
84868686181
-
The prolyl isomerase Pin1 targets stem-loop binding protein (SLBP) to dissociate the SLBP-histone mRNA complex linking histone mRNA decay with SLBP ubiquitination
-
Krishnan, N., Lam, T. T., Fritz, A., Rempinski, D., OLoughlin, K., Minderman, H., Berezney, R., Marzluff, W. F., and Thapar, R. (2012) The prolyl isomerase Pin1 targets stem-loop binding protein (SLBP) to dissociate the SLBP-histone mRNA complex linking histone mRNA decay with SLBP ubiquitination Mol. Cell. Biol. 32, 4306-4322
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 4306-4322
-
-
Krishnan, N.1
Lam, T.T.2
Fritz, A.3
Rempinski, D.4
Oloughlin, K.5
Minderman, H.6
Berezney, R.7
Marzluff, W.F.8
Thapar, R.9
-
109
-
-
0034161452
-
SAP: A putative DNA-binding motif involved in chromosomal organization
-
Aravind, L. and Koonin, E. V. (2000) SAP: A putative DNA-binding motif involved in chromosomal organization Trends Biochem. Sci. 25, 112-114
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 112-114
-
-
Aravind, L.1
Koonin, E.V.2
-
110
-
-
84872026333
-
Eri1 degrades the stem-loop of oligouridylated histone mRNAs to induce replication-dependent decay
-
Hoefig, K. P., Rath, N., Heinz, G. A., Wolf, C., Dameris, J., Schepers, A., Kremmer, E., Ansel, K. M., and Heissmeyer, V. (2013) Eri1 degrades the stem-loop of oligouridylated histone mRNAs to induce replication-dependent decay Nat. Struct. Mol. Biol. 20, 73-81
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 73-81
-
-
Hoefig, K.P.1
Rath, N.2
Heinz, G.A.3
Wolf, C.4
Dameris, J.5
Schepers, A.6
Kremmer, E.7
Ansel, K.M.8
Heissmeyer, V.9
-
111
-
-
43249083987
-
Mouse Eri1 interacts with the ribosome and catalyzes 5.8S rRNA processing
-
Ansel, K. M., Pastor, W. A., Rath, N., Lapan, A. D., Glasmacher, E., Wolf, C., Smith, L. C., Papadopoulou, N., Lamperti, E. D., Tahiliani, M., Ellwart, J. W., Shi, Y., Kremmer, E., Rao, A., and Heissmeyer, V. (2008) Mouse Eri1 interacts with the ribosome and catalyzes 5.8S rRNA processing Nat. Struct. Mol. Biol. 15, 523-530
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 523-530
-
-
Ansel, K.M.1
Pastor, W.A.2
Rath, N.3
Lapan, A.D.4
Glasmacher, E.5
Wolf, C.6
Smith, L.C.7
Papadopoulou, N.8
Lamperti, E.D.9
Tahiliani, M.10
Ellwart, J.W.11
Shi, Y.12
Kremmer, E.13
Rao, A.14
Heissmeyer, V.15
-
112
-
-
84872474666
-
Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3′hExo ternary complex
-
Tan, D., Marzluff, W. F., Dominski, Z., and Tong, L. (2013) Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3′hExo ternary complex Science 339, 318-321
-
(2013)
Science
, vol.339
, pp. 318-321
-
-
Tan, D.1
Marzluff, W.F.2
Dominski, Z.3
Tong, L.4
-
113
-
-
53249132654
-
Conserved motifs in both CPSF73 and CPSF100 are required to assemble the active endonuclease for histone mRNA 3′-end maturation
-
Kolev, N. G., Yario, T. A., Benson, E., and Steitz, J. A. (2008) Conserved motifs in both CPSF73 and CPSF100 are required to assemble the active endonuclease for histone mRNA 3′-end maturation EMBO Rep. 9, 1013-1018
-
(2008)
EMBO Rep.
, vol.9
, pp. 1013-1018
-
-
Kolev, N.G.1
Yario, T.A.2
Benson, E.3
Steitz, J.A.4
-
114
-
-
65549149976
-
A core complex of CPSF73, CPSF100, and symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs
-
Sullivan, K. D., Steiniger, M., and Marzluff, W. F. (2009) A core complex of CPSF73, CPSF100, and symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs Mol. Cell 34, 322-332
-
(2009)
Mol. Cell
, vol.34
, pp. 322-332
-
-
Sullivan, K.D.1
Steiniger, M.2
Marzluff, W.F.3
-
115
-
-
26944459450
-
Symplekin and multiple other polyadenylation factors participate in 3′-end maturation of histone mRNAs
-
Kolev, N. G. and Steitz, J. A. (2005) Symplekin and multiple other polyadenylation factors participate in 3′-end maturation of histone mRNAs Genes Dev. 19, 2583-2592
-
(2005)
Genes Dev.
, vol.19
, pp. 2583-2592
-
-
Kolev, N.G.1
Steitz, J.A.2
-
116
-
-
0033614347
-
The CED-4-homologous protein FLASH is involved in Fas-mediated activation of caspase-8 during apoptosis
-
Imai, Y., Kimura, T., Murakami, A., Yajima, N., Sakamaki, K., and Yonehara, S. (1999) The CED-4-homologous protein FLASH is involved in Fas-mediated activation of caspase-8 during apoptosis Nature 398, 777-785
-
(1999)
Nature
, vol.398
, pp. 777-785
-
-
Imai, Y.1
Kimura, T.2
Murakami, A.3
Yajima, N.4
Sakamaki, K.5
Yonehara, S.6
-
117
-
-
70350005393
-
FLASH, a proapoptotic protein involved in activation of caspase-8, is essential for 3′ end processing of histone pre-mRNAs
-
Yang, X.-C., Burch, B. D., Yan, Y., Marzluff, W. F., and Dominski, Z. (2009) FLASH, a proapoptotic protein involved in activation of caspase-8, is essential for 3′ end processing of histone pre-mRNAs Mol. Cell 36, 267-278
-
(2009)
Mol. Cell
, vol.36
, pp. 267-278
-
-
Yang, X.-C.1
Burch, B.D.2
Yan, Y.3
Marzluff, W.F.4
Dominski, Z.5
-
118
-
-
79956201503
-
Interaction between FLASH and Lsm11 is essential for histone pre-mRNA processing in vivo in Drosophila
-
Burch, B. D., Godfrey, A. C., Gasdaska, P. Y., Salzler, H. R., Duronio, R. J., Marzluff, W. F., and Dominski, Z. (2011) Interaction between FLASH and Lsm11 is essential for histone pre-mRNA processing in vivo in Drosophila RNA 17, 1132-1147
-
(2011)
RNA
, vol.17
, pp. 1132-1147
-
-
Burch, B.D.1
Godfrey, A.C.2
Gasdaska, P.Y.3
Salzler, H.R.4
Duronio, R.J.5
Marzluff, W.F.6
Dominski, Z.7
-
119
-
-
79953771482
-
FLASH is required for the endonucleolytic cleavage of histone pre-mRNAs but is dispensable for the 5′ exonucleolytic degradation of the downstream cleavage product
-
Yang, X.-C., Xu, B., Sabath, I., Kunduru, L., Burch, B. D., Marzluff, W. F., and Dominski, Z. (2011) FLASH is required for the endonucleolytic cleavage of histone pre-mRNAs but is dispensable for the 5′ exonucleolytic degradation of the downstream cleavage product Mol. Cell. Biol. 31, 1492-1502
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 1492-1502
-
-
Yang, X.-C.1
Xu, B.2
Sabath, I.3
Kunduru, L.4
Burch, B.D.5
Marzluff, W.F.6
Dominski, Z.7
-
120
-
-
84871898346
-
A complex containing the CPSF73 endonuclease and other poyadenylation factors associates with U7 snRNP and is recruited to histone pre-mRNA for 3′-end processing
-
Yang, X.-C., Sabath, I., Debski, J., Kaus-Drobek, M., Dadlez, M., Marzluff, W. F., and Dominski, Z. (2013) A complex containing the CPSF73 endonuclease and other poyadenylation factors associates with U7 snRNP and is recruited to histone pre-mRNA for 3′-end processing Mol. Cell. Biol. 33, 28-37
-
(2013)
Mol. Cell. Biol.
, vol.33
, pp. 28-37
-
-
Yang, X.-C.1
Sabath, I.2
Debski, J.3
Kaus-Drobek, M.4
Dadlez, M.5
Marzluff, W.F.6
Dominski, Z.7
-
121
-
-
84888412297
-
3′-end processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors
-
Sabath, I., Skrajna, A., Yang, X.-C., Dadlez, M., Marzluff, W. F., and Dominski, Z. (2013) 3′-end processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors RNA 19, 1726-1744
-
(2013)
RNA
, vol.19
, pp. 1726-1744
-
-
Sabath, I.1
Skrajna, A.2
Yang, X.-C.3
Dadlez, M.4
Marzluff, W.F.5
Dominski, Z.6
-
122
-
-
68849113484
-
Interaction of FLASH with arsenite resistance protein 2 is involved in cell cycle progression at S phase
-
Kiriyama, M., Kobayashi, Y., Saito, M., Ishikawa, F., and Yonehara, S. (2009) Interaction of FLASH with arsenite resistance protein 2 is involved in cell cycle progression at S phase Mol. Cell. Biol. 29, 4729-4741
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 4729-4741
-
-
Kiriyama, M.1
Kobayashi, Y.2
Saito, M.3
Ishikawa, F.4
Yonehara, S.5
-
123
-
-
84855877366
-
Ars2 promotes proper replication-dependent histone mRNA 3′ end formation
-
Gruber, J. J., Olejniczak, S. H., Yong, J., La Rocca, G., Dreyfuss, G., and Thompson, C. B. (2012) Ars2 promotes proper replication-dependent histone mRNA 3′ end formation Mol. Cell 45, 87-98
-
(2012)
Mol. Cell
, vol.45
, pp. 87-98
-
-
Gruber, J.J.1
Olejniczak, S.H.2
Yong, J.3
La Rocca, G.4
Dreyfuss, G.5
Thompson, C.B.6
-
124
-
-
34247552158
-
NELF interacts with CBC and participates in 3′ end processing of replication-dependent histone mRNAs
-
Narita, T., Yung, T. M. C., Yamamoto, J., Tsuboi, Y., Tanabe, K., Yamaguchi, Y., and Handa, H. (2007) NELF interacts with CBC and participates in 3′ end processing of replication-dependent histone mRNAs Mol. Cell 26, 349-365
-
(2007)
Mol. Cell
, vol.26
, pp. 349-365
-
-
Narita, T.1
Yung, T.M.C.2
Yamamoto, J.3
Tsuboi, Y.4
Tanabe, K.5
Yamaguchi, Y.6
Handa, H.7
-
125
-
-
84890187791
-
CBC-ARS2 stimulates 3′-end maturation of multiple RNA families and favors cap-proximal processing
-
Hallais, M., Pontvianne, F., Andersen, P. R., Clerici, M., Lener, D., Benbahouche, N. E., Gostan, T., Vandermoere, F., Robert, M.-C., Cusack, S., Verheggen, C., Jensen, T. H., and Bertrand, E. (2013) CBC-ARS2 stimulates 3′-end maturation of multiple RNA families and favors cap-proximal processing Nat. Struct. Mol. Biol. 20, 1358-1366
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 1358-1366
-
-
Hallais, M.1
Pontvianne, F.2
Andersen, P.R.3
Clerici, M.4
Lener, D.5
Benbahouche, N.E.6
Gostan, T.7
Vandermoere, F.8
Robert, M.-C.9
Cusack, S.10
Verheggen, C.11
Jensen, T.H.12
Bertrand, E.13
-
126
-
-
33747779675
-
ZFP100, a component of the active U7 snRNP limiting for histone pre-mRNA processing, is required for entry into S phase
-
Wagner, E. J. and Marzluff, W. F. (2006) ZFP100, a component of the active U7 snRNP limiting for histone pre-mRNA processing, is required for entry into S phase Mol. Cell. Biol. 26, 6702-6712
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 6702-6712
-
-
Wagner, E.J.1
Marzluff, W.F.2
-
127
-
-
80555125095
-
RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3′ end processing
-
Hsin, J.-P., Sheth, A., and Manley, J. L. (2011) RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3′ end processing Science 334, 683-686
-
(2011)
Science
, vol.334
, pp. 683-686
-
-
Hsin, J.-P.1
Sheth, A.2
Manley, J.L.3
-
128
-
-
84862206497
-
Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation
-
Hintermair, C., Heidemann, M., Koch, F., Descostes, N., Gut, M., Gut, I., Fenouil, R., Ferrier, P., Flatley, A., Kremmer, E., Chapman, R. D., Andrau, J. C., and Eick, D. (2012) Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation EMBO J. 31, 2784-2797
-
(2012)
EMBO J.
, vol.31
, pp. 2784-2797
-
-
Hintermair, C.1
Heidemann, M.2
Koch, F.3
Descostes, N.4
Gut, M.5
Gut, I.6
Fenouil, R.7
Ferrier, P.8
Flatley, A.9
Kremmer, E.10
Chapman, R.D.11
Andrau, J.C.12
Eick, D.13
-
129
-
-
68249128223
-
CDK9 directs H2B monoubiquitination and controls replication-dependent histone mRNA 3′-end processing
-
Pirngruber, J., Shchebet, A., Schreiber, L., Shema, E., Minsky, N., Chapman, R. D., Eick, D., Aylon, Y., Oren, M., and Johnsen, S. A. (2009) CDK9 directs H2B monoubiquitination and controls replication-dependent histone mRNA 3′-end processing EMBO Rep. 10, 894-900
-
(2009)
EMBO Rep.
, vol.10
, pp. 894-900
-
-
Pirngruber, J.1
Shchebet, A.2
Schreiber, L.3
Shema, E.4
Minsky, N.5
Chapman, R.D.6
Eick, D.7
Aylon, Y.8
Oren, M.9
Johnsen, S.A.10
-
130
-
-
77952425934
-
Induced G1 cell-cycle arrest controls replication-dependent histone mRNA 3′ end processing through p21, NPAT and CDK9
-
Pirngruber, J. and Johnsen, S. A. (2010) Induced G1 cell-cycle arrest controls replication-dependent histone mRNA 3′ end processing through p21, NPAT and CDK9 Oncogene 29, 2853-2863
-
(2010)
Oncogene
, vol.29
, pp. 2853-2863
-
-
Pirngruber, J.1
Johnsen, S.A.2
-
131
-
-
33847076248
-
Chromatin challenges during DNA replication and repair
-
Groth, A., Rocha, W., Verreault, A., and Almouzni, G. (2007) Chromatin challenges during DNA replication and repair Cell 128, 721-733
-
(2007)
Cell
, vol.128
, pp. 721-733
-
-
Groth, A.1
Rocha, W.2
Verreault, A.3
Almouzni, G.4
-
132
-
-
84892715801
-
Translation regulation and proteasome mediated degradation cooperate to keep stem-loop binding protein, a major player in histone mRNA metabolism, low in G1-phase
-
Djakbarova, U., Marzluff, W. F., and Koseoglu, M. M. (2014) Translation regulation and proteasome mediated degradation cooperate to keep stem-loop binding protein, a major player in histone mRNA metabolism, low in G1-phase J. Cell. Biochem. 115, 523-530
-
(2014)
J. Cell. Biochem.
, vol.115
, pp. 523-530
-
-
Djakbarova, U.1
Marzluff, W.F.2
Koseoglu, M.M.3
-
136
-
-
69249222799
-
Cap in hand: Targeting eIF4E
-
Fischer, P. M. (2009) Cap in hand: Targeting eIF4E Cell Cycle 8, 2535-2541
-
(2009)
Cell Cycle
, vol.8
, pp. 2535-2541
-
-
Fischer, P.M.1
-
137
-
-
78149426485
-
Multiple mRNA decapping enzymes in mammalian cells
-
Song, M.-G., Li, Y., and Kiledjian, M. (2010) Multiple mRNA decapping enzymes in mammalian cells Mol. Cell 40, 423-432
-
(2010)
Mol. Cell
, vol.40
, pp. 423-432
-
-
Song, M.-G.1
Li, Y.2
Kiledjian, M.3
-
138
-
-
79951518632
-
Differential utilization of decapping enzymes in mammalian mRNA decay pathways
-
Li, Y., Song, M., and Kiledjian, M. (2011) Differential utilization of decapping enzymes in mammalian mRNA decay pathways RNA 17, 419-428
-
(2011)
RNA
, vol.17
, pp. 419-428
-
-
Li, Y.1
Song, M.2
Kiledjian, M.3
-
139
-
-
84874337023
-
Mutiple Nudix family proteins possess mRNA decapping activity
-
Song, M. G., Bail, S., and Kiledjian, M. (2013) Mutiple Nudix family proteins possess mRNA decapping activity RNA 19, 390-399
-
(2013)
RNA
, vol.19
, pp. 390-399
-
-
Song, M.G.1
Bail, S.2
Kiledjian, M.3
-
140
-
-
64749111945
-
Structure and function of the 5′-3′ exoribonuclease Ratl and its activating partner Rail
-
Xiang, S., Cooper-Morgan, A., Jiao, X., Kiledjian, M., Manley, J. L., and Tong, L. (2009) Structure and function of the 5′-3′ exoribonuclease Ratl and its activating partner Rail Nature 458, 784-788
-
(2009)
Nature
, vol.458
, pp. 784-788
-
-
Xiang, S.1
Cooper-Morgan, A.2
Jiao, X.3
Kiledjian, M.4
Manley, J.L.5
Tong, L.6
-
141
-
-
77957340903
-
Identification of a quality-control mechanism for mRNA 5′-end capping
-
Jiao, X., Xiang, S., Oh, C.-S., Martin, C. E., Tong, L., and Kiledjian, M. (2010) Identification of a quality-control mechanism for mRNA 5′-end capping Nature 467, 608-611
-
(2010)
Nature
, vol.467
, pp. 608-611
-
-
Jiao, X.1
Xiang, S.2
Oh, C.-S.3
Martin, C.E.4
Tong, L.5
Kiledjian, M.6
-
142
-
-
84867229926
-
Dxo1 is a new type of eukaryotic enzyme with both decapping and 5′-3′ exoribonuclease activity
-
Chang, J. H., Jiao, X., Chiba, K., Kiledjian, M., and Tong, L. (2012) Dxo1 is a new type of eukaryotic enzyme with both decapping and 5′-3′ exoribonuclease activity Nat. Struct. Mol. Biol. 19, 1011-1017
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1011-1017
-
-
Chang, J.H.1
Jiao, X.2
Chiba, K.3
Kiledjian, M.4
Tong, L.5
-
143
-
-
84876088413
-
A mammalian pre-mRNA 5′ end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing
-
Jiao, X., Chang, J. H., Kilic, T., Tong, L., and Kiledjian, M. (2013) A mammalian pre-mRNA 5′ end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing Mol. Cell 50, 104-115
-
(2013)
Mol. Cell
, vol.50
, pp. 104-115
-
-
Jiao, X.1
Chang, J.H.2
Kilic, T.3
Tong, L.4
Kiledjian, M.5
-
144
-
-
0034664813
-
Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories
-
Aravind, L., Makarova, K. S., and Koonin, E. V. (2000) Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories Nucleic Acids Res. 28, 3417-3432
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3417-3432
-
-
Aravind, L.1
Makarova, K.S.2
Koonin, E.V.3
-
145
-
-
84867287187
-
Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily
-
Steczkiewicz, K., Muszewska, A., Knizewski, L., Rychlewski, L., and Ginalski, K. (2012) Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily Nucleic Acids Res. 40, 7016-7045
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7016-7045
-
-
Steczkiewicz, K.1
Muszewska, A.2
Knizewski, L.3
Rychlewski, L.4
Ginalski, K.5
-
146
-
-
68949196300
-
Crystal structure of the HEAT domain from the pre-mRNA processing factor symplekin
-
Kennedy, S. A., Frazier, M. L., Steiniger, M., Mast, A. M., Marzluff, W. F., and Redinbo, M. R. (2009) Crystal structure of the HEAT domain from the pre-mRNA processing factor symplekin J. Mol. Biol. 392, 115-128
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 115-128
-
-
Kennedy, S.A.1
Frazier, M.L.2
Steiniger, M.3
Mast, A.M.4
Marzluff, W.F.5
Redinbo, M.R.6
-
147
-
-
79952180042
-
Crystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II, in complex with a transition state analogue
-
Zhang, Y., Zhang, M., and Zhang, Y. (2011) Crystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II, in complex with a transition state analogue Biochem. J. 434, 435-444
-
(2011)
Biochem. J.
, vol.434
, pp. 435-444
-
-
Zhang, Y.1
Zhang, M.2
Zhang, Y.3
-
148
-
-
84859882591
-
Interaction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization
-
Zhang, M., Lam, T. T., Tonelli, M., Marzluff, W. F., and Thapar, R. (2012) Interaction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization Biochemistry 51, 3215-3231
-
(2012)
Biochemistry
, vol.51
, pp. 3215-3231
-
-
Zhang, M.1
Lam, T.T.2
Tonelli, M.3
Marzluff, W.F.4
Thapar, R.5
|