Crystal structure of the Rna14-Rna15 complex

RNA

Volumn 18, Issue 6, 2012, Pages 1154-1162

  Paulson, Ashley R ^a   Tong, Liang ^a  

^a Och Spine at New York Presbyterian Hospitals   (United States)

Author keywords

CstF 64; CstF 77; HAT domain; HEAT repeat; Pre mRNA processing; Protein complex

Indexed keywords

CLEAVAGE STIMULATION FACTOR; CLEAVAGE STIMULATION FACTOR 64; CLEAVAGE STIMULATION FACTOR 77; RNA; RNA14; RNA15; UNCLASSIFIED DRUG;

ARTICLE; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; HINGE REGION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; RNA CONFORMATION; RNA STRUCTURE;

AMINO ACID SEQUENCE; CELL LINE; CRYSTALLOGRAPHY, X-RAY; KLUYVEROMYCES; MOLECULAR SEQUENCE DATA; MRNA CLEAVAGE AND POLYADENYLATION FACTORS; PROTEIN BINDING; PROTEIN CONFORMATION;

EUKARYOTA; MAMMALIA;

EID: 84861374448     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.032524.112     Document Type: Article

References (27)

1. Bai Y, Auperin TC, Chou C-Y, Chang G-G, Manley JL, Tong L. 2007a. Crystal structure of murine CstF-77: dimeric association and implications for polyadenylation of mRNA precursors. Mol Cell 25: 863-875. (Pubitemid 46436526)
2. Bai Y, Auperin TC, Tong L. 2007b. The use of in situ proteolysis in the crystallization of murine CstF-77. Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 135-138. (Pubitemid 46276935)
3. Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang J-S, Kuszewski J, Nilges M, Pannu NS, et al. 1998. Crystallography and NMR System: A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 54: 905-921.
4. Colgan DF, Manley JL. 1997. Mechanism and regulation of mRNA polyadenylation. Genes Dev 11: 2755-2766. (Pubitemid 27481677)
5. Emsley P, Cowtan KD. 2004. Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60: 2126-2132. (Pubitemid 41742764)
6. Gordon JMB, Shikov S, Kuehner JN, Liriano M, Lee E, Stafford W, Poulsen MB, Harrison C, Moore C, Bohm A. 2011. Reconstitution of CF IA from overexpressed subunits reveals stoichiometry and provides insights into molecular topology. Biochemistry 50: 10203-10214.
7. Hendrickson WA. 1991. Determination of macromolecular structures from anomalous diffraction of synchrotron radiation. Science 254: 51-58. (Pubitemid 21917315)
8. Hendrickson WA, Horton JR, LeMaster DM. 1990. Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure. EMBO J 9: 1665-1672.
9. Jogl G, Tao X, Xu Y, Tong L. 2001. COMO: A program for combined molecular replacement. Acta Crystallogr D Biol Crystallogr 57: 1127-1134. (Pubitemid 32739522)
10. Jones TA, Zou JY, Cowan SW, Kjeldgaard M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47: 110-119.
11. Legrand P, Pinaud N, Minvielle-Sebastia L, Fribourg S. 2007. The structure of CstF-77 homodimer provides insights into CstF assembly. Nucleic Acids Res 35: 4515-4522. (Pubitemid 47244602)
12. Mandel CR, Gebauer D, Zhang H, Tong L. 2006a. A serendipitous discovery that in situ proteolysis is required for the crystallization of yeast CPSF-100 (Ydh1p). Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 1041-1045. (Pubitemid 44526716)
13. Mandel CR, Kaneko S, Zhang H, Gebauer D, Vethantham V, Manley JL, Tong L. 2006b. Polyadenylation factor CPSF-73 is the premRNA 3′-end-processing endonuclease. Nature 444: 953-956. (Pubitemid 46025011)
14. Mandel CR, Bai Y, Tong L. 2008. Protein factors in pre-mRNA 3′-end processing. Cell Mol Life Sci 65: 1099-1122.
15. Medler S, Al Husini N, Raghunayakula S, Mukundan B, Aldea A, Ansari A. 2011. Evidence for a complex of transcription factor IIB (TFIIB) with poly(A) polymerase and cleavage factor I subunits required for gene looping. J Biol Chem 286: 33709-33718.
16. Minvielle-Sebastia L, Preker PJ, Keller W. 1994. RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3′-end processing factor. Science 266: 1702-1705.
17. Moreno-Morcillo M, Minvielle-Sebastia L, Fribourg S, Mackereth CD. 2011. Locked tether formation by cooperative folding of Rna14p monkeytail and Rna15p hinge domains in the yeast CFIA complex. Structure 19: 534-545.
18. Murshudov GN, Vagin AA, Dodson EJ. 1997. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53: 240-255. (Pubitemid 27235885)
19. Noble CG, Walker PA, Calder LJ, Taylor IA. 2004. Rna14-Rna15 assembly mediates the RNA-binding capability of Saccharomyces cerevisiae cleavage factor IA. Nucleic Acids Res 32: 3364-3375. (Pubitemid 39117452)
20. Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326. (Pubitemid 27085611)
21. Pancevac C, Goldstone DC, Ramos A, Taylor IA. 2010. Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3′-end processing factors. Nucleic Acids Res 38: 3119-3132.
22. Preker PJ, Keller W. 1998. The HAT helix, a repetitive motif implicated in RNA processing. Trends Biochem Sci 23: 15-16. (Pubitemid 28093987)
23. Qu X, Perez-Canadillas JM, Agrawal S, de Baecke J, Cheng H, Varani G, Moore CL. 2007. The C-terminal domains of vertebrate CstF-64 and its yeast orthologue Rna15 form a new structure critical for mRNA 3′-end processing. J Biol Chem 283: 2101-2115. (Pubitemid 47076683)
24. Terwilliger TC. 2003. SOLVE and RESOLVE: automated structure solution and density modification. Methods Enzymol 374: 22-37. (Pubitemid 37531804)
25. Weeks CM, Adams PD, Berendzen J, Brunger AT, Dodson EJ, Grosse-Kunstleve RW, Schneider TR, Sheldrick GM, Terwilliger TC, Turkenburg MG, et al. 2003. Automatic solution of heavy-atom substructures. Methods Enzymol 374: 37-83. (Pubitemid 37531805)
26. Xiang S, Usunow G, Lange G, Busch M, Tong L. 2007. Crystal structure of 1-deoxy-D-xylulose 5-phosphate synthase, a crucial enzyme for isoprenoids biosynthesis. J Biol Chem 282: 2676-2682. (Pubitemid 47076757)
27. Zhao J, Hyman L, Moore CL. 1999. Formation of mRNA 3′ ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiol Mol Biol Rev 63: 405-445. (Pubitemid 29264977)