-
1
-
-
0033059981
-
Formation of mRNA 3' ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
Zhao J, Hyman L, Moore C. Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiol Mol Biol Rev 1999; 63:405-445. (Pubitemid 29264977)
-
(1999)
Microbiology and Molecular Biology Reviews
, vol.63
, Issue.2
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.3
-
2
-
-
0033984159
-
Complex protein interactions within the human polyadenylation machinery identify a novel component
-
DOI 10.1128/MCB.20.5.1515-1525.2000
-
Takagaki Y, Manley JL. Complex protein interactions within the human polyadenylation machinery identify a novel component. Mol Cell Biol 2000; 20:1515-1525. (Pubitemid 30100171)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.5
, pp. 1515-1525
-
-
Takagakit, Y.1
Manley, J.L.2
-
3
-
-
0024805402
-
An ordered pathway of assembly of components required for polyadenylation site recognition and processing
-
Gilmartin GM, Nevins JR. An ordered pathway of assembly of components required for polyadenylation site recognition and processing. Genes Dev 1989; 3:2180-2190. (Pubitemid 20023242)
-
(1989)
Genes and Development
, vol.3
, Issue.12 B
, pp. 2180-2190
-
-
Gilmartin, G.M.1
Nevins, J.R.2
-
4
-
-
0347416974
-
m
-
DOI 10.1016/S1097-2765(03)00453-2
-
Brown KM, Gilmartin GM. A mechanism for the regulation of pre-mRNA 3' processing by human cleavage factor Im. Mol Cell 2003; 12:1467-1476. (Pubitemid 38037015)
-
(2003)
Molecular Cell
, vol.12
, Issue.6
, pp. 1467-1476
-
-
Brown, K.M.1
Gilmartin, G.M.2
-
5
-
-
0031610366
-
s related to spliceosomal SR proteins and can be reconstituted in vitro from recombinant subunits
-
Rüegsegger U, Blank D, Keller W. Human pre-mRNA cleavage factor Im is related to spliceosomal SR proteins and can be reconstituted in vitro from recombinant subunits. Mol Cell 1998; 1:243-253. (Pubitemid 128378665)
-
(1998)
Molecular Cell
, vol.1
, Issue.2
, pp. 243-253
-
-
Ruegsegger, U.1
Blank, D.2
Keller, W.3
-
6
-
-
0029991323
-
Purification and characterization of human cleavage factor Im involved in the 3' end processing of messenger RNA precursors
-
Rüegsegger U, Beyer K, Keller W. Purification and characterization of human cleavage factor Im involved in the 3' end processing of messenger RNA precursors. J Biol Chem 1996; 271:6107-6113.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 6107-6113
-
-
Rüegsegger, U.1
Beyer, K.2
Keller, W.3
-
7
-
-
22344439263
-
Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition
-
DOI 10.1101/gad.1298605
-
Venkataraman K, Brown KM, Gilmartin GM. Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition. Genes Dev 2005; 19:1315-1327. (Pubitemid 41003021)
-
(2005)
Genes and Development
, vol.19
, Issue.11
, pp. 1315-1327
-
-
Venkataraman, K.1
Brown, K.M.2
Gilmartin, G.M.3
-
8
-
-
0027439688
-
Assembly of a processive messenger RNA polyadenylation complex
-
Bienroth S, Keller W, Wahle E. Assembly of a processive messenger RNA polyadenylation complex. EMBO J 1993; 12:585-594. (Pubitemid 23073704)
-
(1993)
EMBO Journal
, vol.12
, Issue.2
, pp. 585-594
-
-
Bienroth, S.1
Keller, W.2
Wahle, E.3
-
9
-
-
33845675377
-
Knock-down of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3′-UTRs
-
DOI 10.1093/nar/gkl794
-
Kubo T, Wada T, Yamaguchi Y, Shimizu A, Handa H. Knockdown of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3'-UTRs. Nucleic Acids Res 2006; 34:6264-6271. (Pubitemid 44942747)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.21
, pp. 6264-6271
-
-
Kubo, T.1
Wada, T.2
Yamaguchi, Y.3
Shimizu, A.4
Handa, H.5
-
10
-
-
0029835350
-
The MutT proteins or 'Nudix' hydrolases, a family of versatile, widely distributed, 'housecleaning' enzymes
-
DOI 10.1074/jbc.271.41.25059
-
Bessman MJ, Frick DN, O'Handley SF. The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes. J Biol Chem 1996; 271:25059-25062. (Pubitemid 26337861)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.41
, pp. 25059-25062
-
-
Bessman, M.J.1
Frick, D.N.2
O'Handley, S.F.3
-
11
-
-
0023979999
-
Heterogeneous nuclear ribonucleoprotein particles and the pathway of mRNA formation
-
Dreyfuss G, Swanson MS, Pinol-Roma S. Heterogeneous nuclear ribonucleoprotein particles and the pathway of mRNA formation. Trends Biochem Sci 1988; 13:86-91.
-
(1988)
Trends Biochem. Sci.
, vol.13
, pp. 86-91
-
-
Dreyfuss, G.1
Swanson, M.S.2
Pinol-Roma, S.3
-
12
-
-
0023124596
-
Primary structure of human nuclear ribonucleoprotein particle C proteins: Conservation of sequence and domain structures in heterogeneous nuclear RNA, mRNA, and pre-rRNA-binding proteins
-
Swanson MS, Nakagawa TY, LeVan K, Dreyfuss G. Primary structure of human nuclear ribonucleoprotein particle C proteins: conservation of sequence and domain structures in heterogeneous nuclear RNA, mRNA, and pre-rRNA-binding proteins. Mol Cell Biol 1987; 7:1731-1739. (Pubitemid 17059166)
-
(1987)
Molecular and Cellular Biology
, vol.7
, Issue.5
, pp. 1731-1739
-
-
Swanson, M.S.1
Nakagawa, T.Y.2
LeVan, K.3
Dreyfuss, G.4
-
13
-
-
0022766180
-
mRNA polyadenylate-binding protein: Gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence
-
Adam SA, Nakagawa T, Swanson MS, Woodruff TK, Dreyfuss G. mRNA polyadenylate-binding protein: gene isolation and sequencing and identification of a ribonucleoprotein consensus sequence. Mol Cell Biol 1986; 6:2932-2943.
-
(1986)
Mol. Cell Biol.
, vol.6
, pp. 2932-2943
-
-
Adam, S.A.1
Nakagawa, T.2
Swanson, M.S.3
Woodruff, T.K.4
Dreyfuss, G.5
-
14
-
-
0034256020
-
Alternative pre-mRNA splicing: The logic of combinatorial control
-
DOI 10.1016/S0968-0004(00)01604-2, PII S0968000400016042
-
Smith CW, Valcarcel J. Alternative pre-mRNA splicing: the logic of combinatorial control. Trends Biochem Sci 2000; 25:381-388. (Pubitemid 30497249)
-
(2000)
Trends in Biochemical Sciences
, vol.25
, Issue.8
, pp. 381-388
-
-
Smith, C.W.J.1
Valcarcel, J.2
-
15
-
-
4143151952
-
m mediate RNA binding, protein-protein interactions, and subcellular localization
-
DOI 10.1074/jbc.M403927200
-
Dettwiler S, Aringhieri C, Cardinale S, Keller W, Barabino SM. Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization. J Biol Chem 2004; 279:35788-35797. (Pubitemid 39100585)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.34
, pp. 35788-35797
-
-
Dettwiler, S.1
Aringhieri, C.2
Cardinale, S.3
Keller, W.4
Barabino, S.M.L.5
-
16
-
-
45549083224
-
m
-
DOI 10.1093/nar/gkn079
-
Coseno M, Martin G, Berger C, et al. Crystal structure of the 25 kDa subunit of human cleavage factor Im. Nucleic Acids Res 2008; 36:3474-3483. (Pubitemid 351859014)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.10
, pp. 3474-3483
-
-
Coseno, M.1
Martin, G.2
Berger, C.3
Gilmartin, G.4
Keller, W.5
Doublie, S.6
-
17
-
-
77953454014
-
Structural basis of UGUA recognition by the Nudix protein CFIm25 and implications for a regulatory role in mRNA 3' processing
-
USA
-
Yang Q, Gilmartin GM, Doublié S. Structural basis of UGUA recognition by the Nudix protein CFIm25 and implications for a regulatory role in mRNA 3' processing. Proc Natl Acad Sci USA 2010; 107:10062-10067.
-
(2010)
Proc. Natl. Acad. Sci.
, vol.107
, pp. 10062-10067
-
-
Yang, Q.1
Gilmartin, G.M.2
Doublié, S.3
-
18
-
-
0036882072
-
7GpppG binding to the nuclear cap-binding protein complex
-
DOI 10.1038/nsb874
-
Calero G, Wilson KF, Ly T, et al. Structural basis of m7GpppG binding to the nuclear cap-binding protein complex. Nat Struct Biol 2002; 9:912-917. (Pubitemid 35417059)
-
(2002)
Nature Structural Biology
, vol.9
, Issue.12
, pp. 912-917
-
-
Calero, G.1
Wilson, K.F.2
Ly, T.3
Rios-Steiner, J.L.4
Clardy, J.C.5
Cerione, R.A.6
-
19
-
-
0034852936
-
Crystal structure of the human nuclear cap binding complex
-
DOI 10.1016/S1097-2765(01)00299-4
-
Mazza C, Ohno M, Segref A, Mattaj IW, Cusack S. Crystal structure of the human nuclear cap binding complex. Mol Cell 2001; 8:383-396. (Pubitemid 32831555)
-
(2001)
Molecular Cell
, vol.8
, Issue.2
, pp. 383-396
-
-
Mazza, C.1
Ohno, M.2
Segref, A.3
Mattaj, I.W.4
Cusack, S.5
-
20
-
-
0033560881
-
Structural basis for recognition of the tra mRNA precursor by the sex-lethal protein
-
Handa N, Nureki O, Kurimoto K, et al. Structural basis for recognition of the tra mRNA precursor by the sex-lethal protein. Nature 1999; 398:579-585.
-
(1999)
Nature
, vol.398
, pp. 579-585
-
-
Handa, N.1
Nureki, O.2
Kurimoto, K.3
-
21
-
-
0029785147
-
Mapping the protein universe
-
Holm L, Sander C. Mapping the protein universe. Science 1996; 273:595-603.
-
(1996)
Science
, vol.273
, pp. 595-603
-
-
Holm, L.1
Sander, C.2
-
22
-
-
0028103275
-
CCP4 the CCP4 suite: Programs for protein crystallography
-
CCP4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994; 50(Pt 5):760-763.
-
(1994)
Acta. Crystallogr. D Biol. Crystallogr.
, vol.50
, Issue.5
, pp. 760-763
-
-
-
24
-
-
18544377013
-
The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
-
DOI 10.1111/j.1742-4658.2005.04653.x
-
Maris C, Dominguez C, Allain FH. The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J 2005; 272:2118-2131. (Pubitemid 40655326)
-
(2005)
FEBS Journal
, vol.272
, Issue.9
, pp. 2118-2131
-
-
Maris, C.1
Dominguez, C.2
Allain, F.H.-T.3
-
25
-
-
1842473091
-
The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3
-
DOI 10.1038/nsmb741
-
Kadlec J, Izaurralde E, Cusack S. The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3. Nat Struct Mol Biol 2004; 11:330-337. (Pubitemid 38436797)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.4
, pp. 330-337
-
-
Kadlec, J.1
Izaurralde, E.2
Cusack, S.3
-
26
-
-
3543032700
-
Molecular insights into the interaction of PYM with the Mago-Y14 core of the exon junction complex
-
DOI 10.1038/sj.embor.7400091
-
Bono F, Ebert J, Unterholzner L, et al. Molecular insights into the interaction of PYM with the Mago-Y14 core of the exon junction complex. EMBO Rep 2004; 5:304-310. (Pubitemid 38500112)
-
(2004)
EMBO Reports
, vol.5
, Issue.3
, pp. 304-310
-
-
Bono, F.1
Ebert, J.2
Unterholzner, L.3
Guttler, T.4
Izaurralde, E.5
Conti, E.6
-
27
-
-
0037850982
-
Structure of the Y14-Magoh core of the exon junction complex
-
DOI 10.1016/S0960-9822(03)00328-2
-
Lau CK, Diem MD, Dreyfuss G, Van Duyne GD. Structure of the Y14-Magoh core of the exon junction complex. Curr Biol 2003; 13:933-941. (Pubitemid 36632142)
-
(2003)
Current Biology
, vol.13
, Issue.11
, pp. 933-941
-
-
Lau, C.-K.1
Diem, M.D.2
Dreyfuss, G.3
Van Duyne, G.D.4
-
28
-
-
0037766047
-
A novel mode of RBD-protein recognition in the Y14-Mago complex
-
DOI 10.1038/nsb926
-
Fribourg S, Gatfield D, Izaurralde E, Conti E. A novel mode of RBD-protein recognition in the Y14-Mago complex. Nat Struct Biol 2003; 10:433-439. (Pubitemid 36637640)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.6
, pp. 433-439
-
-
Fribourg, S.1
Gatfield, D.2
Izaurralde, E.3
Conti, E.4
-
29
-
-
0038298868
-
65 and SF1/mBBP
-
DOI 10.1016/S1097-2765(03)00115-1
-
Selenko P, Gregorovic G, Sprangers R, et al. Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP. Mol Cell 2003; 11:965-976. (Pubitemid 36566318)
-
(2003)
Molecular Cell
, vol.11
, Issue.4
, pp. 965-976
-
-
Selenko, P.1
Gregorovic, G.2
Sprangers, R.3
Stier, G.4
Rhani, Z.5
Kramer, A.6
Sattler, M.7
-
30
-
-
0035823011
-
65 heterodimer
-
DOI 10.1016/S0092-8674(01)00480-9
-
Kielkopf CL, Rodionova NA, Green MR, Burley SK. A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer. Cell 2001; 106:595-605. (Pubitemid 32879321)
-
(2001)
Cell
, vol.106
, Issue.5
, pp. 595-605
-
-
Kielkopf, C.L.1
Rodionova, N.A.2
Green, M.R.3
Burley, S.K.4
-
31
-
-
0032514483
-
Crystal structure of the spliceosomal U2B-U2A protein complex bound to a fragment of U2 small nuclear RNA
-
Price SR, Evans PR, Nagai K. Crystal structure of the spliceosomal U2B-U2A protein complex bound to a fragment of U2 small nuclear RNA. Nature 1998; 394:645-650.
-
(1998)
Nature
, vol.394
, pp. 45-650
-
-
Price, S.R.1
Evans, P.R.2
Nagai, K.3
-
32
-
-
0033578927
-
Recognition of polyadenylate RNA by the poly(A)-binding protein
-
DOI 10.1016/S0092-8674(00)81517-2
-
Deo RC, Bonanno JB, Sonenberg N, Burley SK. Recognition of polyadenylate RNA by the poly(A)-binding protein. Cell 1999; 98:835-845. (Pubitemid 29446900)
-
(1999)
Cell
, vol.98
, Issue.6
, pp. 835-845
-
-
Deo, R.C.1
Bonanno, J.B.2
Sonenberg, N.3
Burley, S.K.4
-
33
-
-
84934438960
-
UNAFold: Software for nucleic acid folding and hybriziation
-
Markham NR, Zuker M. UNAFold: software for nucleic acid folding and hybriziation. Methods Mol Biol 2008; 453:3-31.
-
(2008)
Methods Mol. Biol.
, vol.453
, pp. 3-31
-
-
Markham, N.R.1
Zuker, M.2
-
35
-
-
13744254695
-
A large-scale analysis of mRNA polyadenylation of human and mouse genes
-
DOI 10.1093/nar/gki158
-
Tian B, Hu J, Zhang H, Lutz CS. A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res 2005; 33:201-212. (Pubitemid 40276942)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.1
, pp. 201-212
-
-
Tian, B.1
Hu, J.2
Zhang, H.3
Lutz, C.S.4
-
36
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski Z, Minor W. Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol 1997; 276:307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
37
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
Vagin A, Teplyakov A. MOLREP: an automated program for molecular replacement. J Appl Cryst 1997; 30:1022-1025. (Pubitemid 127485985)
-
(1997)
Journal of Applied Crystallography
, vol.30
, Issue.6
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
38
-
-
34447508216
-
Phaser crystallographic software
-
DOI 10.1107/S0021889807021206, PII S0021889807021206
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. Phaser crystallographic software. J Appl Cryst 2007; 40:658-674. (Pubitemid 47080256)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
41
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, Clore GM, et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 1998; 54(Pt 5):905-921.
-
(1998)
Acta. Crystallogr. D Biol. Crystallogr.
, vol.54
, Issue.5
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
-
42
-
-
34547592557
-
MolProbity: Allatom contacts and structure validation for proteins and nucleic acids
-
Davis IW, Leaver-Fay A, Chen VB, et al. MolProbity: allatom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 2007; 35:W375-W383.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
|