-
1
-
-
75649144466
-
Cap analog substrates reveal three clades of cap guanine-N2 methyltransferases with distinct methyl acceptor specificities
-
Benarroch D., Jankowska-Anyszka M., Stepinski J., Darzynkiewicz E., Shuman S. Cap analog substrates reveal three clades of cap guanine-N2 methyltransferases with distinct methyl acceptor specificities. RNA 2010, 16:211-220.
-
(2010)
RNA
, vol.16
, pp. 211-220
-
-
Benarroch, D.1
Jankowska-Anyszka, M.2
Stepinski, J.3
Darzynkiewicz, E.4
Shuman, S.5
-
2
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 1998, 54:905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
3
-
-
0036882072
-
Structural basis of m7GpppG binding to the nuclear cap-binding protein complex
-
Calero G., Wilson K.F., Ly T., Rios-Steiner J.L., Clardy J.C., Cerione R.A. Structural basis of m7GpppG binding to the nuclear cap-binding protein complex. Nat. Struct. Biol. 2002, 9:912-917.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 912-917
-
-
Calero, G.1
Wilson, K.F.2
Ly, T.3
Rios-Steiner, J.L.4
Clardy, J.C.5
Cerione, R.A.6
-
4
-
-
84867229926
-
Dxo1 is a new type of eukaryotic enzyme with both decapping and 5'-3' exoribonuclease activity
-
Chang J.H., Jiao X., Chiba K., Oh C., Martin C.E., Kiledjian M., Tong L. Dxo1 is a new type of eukaryotic enzyme with both decapping and 5'-3' exoribonuclease activity. Nat. Struct. Mol. Biol. 2012, 19:1011-1017.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 1011-1017
-
-
Chang, J.H.1
Jiao, X.2
Chiba, K.3
Oh, C.4
Martin, C.E.5
Kiledjian, M.6
Tong, L.7
-
5
-
-
0029775561
-
The yeast splicing factor Mud13p is a commitment complex component and corresponds to CBP20, the small subunit of the nuclear cap-binding complex
-
Colot H.V., Stutz F., Rosbash M. The yeast splicing factor Mud13p is a commitment complex component and corresponds to CBP20, the small subunit of the nuclear cap-binding complex. Genes Dev. 1996, 10:1699-1708.
-
(1996)
Genes Dev.
, vol.10
, pp. 1699-1708
-
-
Colot, H.V.1
Stutz, F.2
Rosbash, M.3
-
6
-
-
0029982647
-
The cap and the 3' splice site similarly affect polyadenylation efficiency
-
Cooke C., Alwine J.C. The cap and the 3' splice site similarly affect polyadenylation efficiency. Mol. Cell. Biol. 1996, 16:2579-2584.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 2579-2584
-
-
Cooke, C.1
Alwine, J.C.2
-
7
-
-
0027320701
-
A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation
-
Decker C.J., Parker R. A turnover pathway for both stable and unstable mRNAs in yeast: evidence for a requirement for deadenylation. Genes Dev. 1993, 7:1632-1643.
-
(1993)
Genes Dev.
, vol.7
, pp. 1632-1643
-
-
Decker, C.J.1
Parker, R.2
-
8
-
-
0033214061
-
The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif
-
Dunckley T., Parker R. The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif. EMBO J. 1999, 18:5411-5422.
-
(1999)
EMBO J.
, vol.18
, pp. 5411-5422
-
-
Dunckley, T.1
Parker, R.2
-
9
-
-
0012002485
-
Cap-dependent RNA splicing in a HeLa nuclear extract
-
Edery I., Sonenberg N. Cap-dependent RNA splicing in a HeLa nuclear extract. Proc. Natl. Acad. Sci. USA 1985, 82:7590-7594.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 7590-7594
-
-
Edery, I.1
Sonenberg, N.2
-
11
-
-
69249222799
-
Cap in hand: targeting eIF4E
-
Fischer P.M. Cap in hand: targeting eIF4E. Cell Cycle 2009, 8:2535-2541.
-
(2009)
Cell Cycle
, vol.8
, pp. 2535-2541
-
-
Fischer, P.M.1
-
12
-
-
0030711724
-
Participation of the nuclear cap binding complex in pre-mRNA 3' processing
-
Flaherty S.M., Fortes P., Izaurralde E., Mattaj I.W., Gilmartin G.M. Participation of the nuclear cap binding complex in pre-mRNA 3' processing. Proc. Natl. Acad. Sci. USA 1997, 94:11893-11898.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11893-11898
-
-
Flaherty, S.M.1
Fortes, P.2
Izaurralde, E.3
Mattaj, I.W.4
Gilmartin, G.M.5
-
13
-
-
0032827601
-
Genetic and physical interactions involving the yeast nuclear cap-binding complex
-
Fortes P., Kufel J., Fornerod M., Polycarpou-Schwarz M., Lafontaine D., Tollervey D., Mattaj I.W. Genetic and physical interactions involving the yeast nuclear cap-binding complex. Mol. Cell. Biol. 1999, 19:6543-6553.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 6543-6553
-
-
Fortes, P.1
Kufel, J.2
Fornerod, M.3
Polycarpou-Schwarz, M.4
Lafontaine, D.5
Tollervey, D.6
Mattaj, I.W.7
-
14
-
-
0034567861
-
Viral and cellular mRNA capping: past and prospects
-
Furuichi Y., Shatkin A.J. Viral and cellular mRNA capping: past and prospects. Adv. Virus Res. 2000, 55:135-184.
-
(2000)
Adv. Virus Res.
, vol.55
, pp. 135-184
-
-
Furuichi, Y.1
Shatkin, A.J.2
-
16
-
-
0024009795
-
Multiple factors are required for specific RNA cleavage at a poly(A) addition site
-
Gilmartin G.M., McDevitt M.A., Nevins J.R. Multiple factors are required for specific RNA cleavage at a poly(A) addition site. Genes Dev. 1988, 2:578-587.
-
(1988)
Genes Dev.
, vol.2
, pp. 578-587
-
-
Gilmartin, G.M.1
McDevitt, M.A.2
Nevins, J.R.3
-
17
-
-
0032834055
-
EIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation
-
Gingras A.C., Raught B., Sonenberg N. eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation. Annu. Rev. Biochem. 1999, 68:913-963.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 913-963
-
-
Gingras, A.C.1
Raught, B.2
Sonenberg, N.3
-
19
-
-
0022332463
-
Poly(A) site cleavage in a HeLa nuclear extract is dependent on downstream sequences
-
Hart R.P., McDevitt M.A., Nevins J.R. Poly(A) site cleavage in a HeLa nuclear extract is dependent on downstream sequences. Cell 1985, 43:677-683.
-
(1985)
Cell
, vol.43
, pp. 677-683
-
-
Hart, R.P.1
McDevitt, M.A.2
Nevins, J.R.3
-
20
-
-
0027214097
-
Yeast cells lacking 5'->3' exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5' cap structure
-
Hsu C.L., Stevens A. Yeast cells lacking 5'->3' exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5' cap structure. Mol. Cell. Biol. 1993, 13:4826-4835.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 4826-4835
-
-
Hsu, C.L.1
Stevens, A.2
-
21
-
-
0024729178
-
Effect of the cap structure on pre-mRNA splicing in Xenopus oocyte nuclei
-
Inoue K., Ohno M., Sakamoto H., Shimura Y. Effect of the cap structure on pre-mRNA splicing in Xenopus oocyte nuclei. Genes Dev. 1989, 3:1472-1479.
-
(1989)
Genes Dev.
, vol.3
, pp. 1472-1479
-
-
Inoue, K.1
Ohno, M.2
Sakamoto, H.3
Shimura, Y.4
-
22
-
-
0027969151
-
A nuclear cap binding protein complex involved in pre-mRNA splicing
-
Izaurralde E., Lewis J., McGuigan C., Jankowska M., Darzynkiewicz E., Mattaj I.W. A nuclear cap binding protein complex involved in pre-mRNA splicing. Cell 1994, 78:657-668.
-
(1994)
Cell
, vol.78
, pp. 657-668
-
-
Izaurralde, E.1
Lewis, J.2
McGuigan, C.3
Jankowska, M.4
Darzynkiewicz, E.5
Mattaj, I.W.6
-
23
-
-
0028983915
-
A cap-binding protein complex mediating U snRNA export
-
Izaurralde E., Lewis J., Gamberi C., Jarmolowski A., McGuigan C., Mattaj I.W. A cap-binding protein complex mediating U snRNA export. Nature 1995, 376:709-712.
-
(1995)
Nature
, vol.376
, pp. 709-712
-
-
Izaurralde, E.1
Lewis, J.2
Gamberi, C.3
Jarmolowski, A.4
McGuigan, C.5
Mattaj, I.W.6
-
24
-
-
33751541451
-
Identification of an mRNA-decapping regulator implicated in X-linked mental retardation
-
Jiao X., Wang Z., Kiledjian M. Identification of an mRNA-decapping regulator implicated in X-linked mental retardation. Mol. Cell 2006, 24:713-722.
-
(2006)
Mol. Cell
, vol.24
, pp. 713-722
-
-
Jiao, X.1
Wang, Z.2
Kiledjian, M.3
-
25
-
-
77957340903
-
Identification of a quality-control mechanism for mRNA 5'-end capping
-
Jiao X., Xiang S., Oh C., Martin C.E., Tong L., Kiledjian M. Identification of a quality-control mechanism for mRNA 5'-end capping. Nature 2010, 467:608-611.
-
(2010)
Nature
, vol.467
, pp. 608-611
-
-
Jiao, X.1
Xiang, S.2
Oh, C.3
Martin, C.E.4
Tong, L.5
Kiledjian, M.6
-
26
-
-
0021747202
-
Recognition of cap structure in splicing in vitro of mRNA precursors
-
Konarska M.M., Padgett R.A., Sharp P.A. Recognition of cap structure in splicing in vitro of mRNA precursors. Cell 1984, 38:731-736.
-
(1984)
Cell
, vol.38
, pp. 731-736
-
-
Konarska, M.M.1
Padgett, R.A.2
Sharp, P.A.3
-
27
-
-
79959546459
-
Cap-binding protein complex links pre-mRNA capping to transcription elongation and alternative splicing through positive transcription elongation factor b (P-TEFb)
-
Lenasi T., Peterlin B.M., Barboric M. Cap-binding protein complex links pre-mRNA capping to transcription elongation and alternative splicing through positive transcription elongation factor b (P-TEFb). J. Biol. Chem. 2011, 286:22758-22768.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 22758-22768
-
-
Lenasi, T.1
Peterlin, B.M.2
Barboric, M.3
-
28
-
-
0029737855
-
A nuclear cap-binding complex facilitates association of U1 snRNP with the cap-proximal 5' splice site
-
Lewis J.D., Izaurralde E., Jarmolowski A., McGuigan C., Mattaj I.W. A nuclear cap-binding complex facilitates association of U1 snRNP with the cap-proximal 5' splice site. Genes Dev. 1996, 10:1683-1698.
-
(1996)
Genes Dev.
, vol.10
, pp. 1683-1698
-
-
Lewis, J.D.1
Izaurralde, E.2
Jarmolowski, A.3
McGuigan, C.4
Mattaj, I.W.5
-
29
-
-
79951518632
-
Differential utilization of decapping enzymes in mammalian mRNA decay pathways
-
Li Y., Song M., Kiledjian M. Differential utilization of decapping enzymes in mammalian mRNA decay pathways. RNA 2011, 17:419-428.
-
(2011)
RNA
, vol.17
, pp. 419-428
-
-
Li, Y.1
Song, M.2
Kiledjian, M.3
-
30
-
-
32544441936
-
Decapping the message: a beginning or an end
-
Liu H., Kiledjian M. Decapping the message: a beginning or an end. Biochem. Soc. Trans. 2006, 34:35-38.
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 35-38
-
-
Liu, H.1
Kiledjian, M.2
-
31
-
-
0036888905
-
Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay
-
Lykke-Andersen J. Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay. Mol. Cell. Biol. 2002, 22:8114-8121.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 8114-8121
-
-
Lykke-Andersen, J.1
-
32
-
-
0030728936
-
Cocrystal structure of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP
-
Marcotrigiano J., Gingras A.C., Sonenberg N., Burley S.K. Cocrystal structure of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell 1997, 89:951-961.
-
(1997)
Cell
, vol.89
, pp. 951-961
-
-
Marcotrigiano, J.1
Gingras, A.C.2
Sonenberg, N.3
Burley, S.K.4
-
33
-
-
0030826444
-
Structure of translation factor eIF4E bound to m7GDP and interaction with 4E-binding protein
-
Matsuo H., Li H., McGuire A.M., Fletcher C.M., Gingras A.C., Sonenberg N., Wagner G. Structure of translation factor eIF4E bound to m7GDP and interaction with 4E-binding protein. Nat. Struct. Biol. 1997, 4:717-724.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 717-724
-
-
Matsuo, H.1
Li, H.2
McGuire, A.M.3
Fletcher, C.M.4
Gingras, A.C.5
Sonenberg, N.6
Wagner, G.7
-
34
-
-
0037107401
-
Large-scale induced fit recognition of an m(7)GpppG cap analogue by the human nuclear cap-binding complex
-
Mazza C., Segref A., Mattaj I.W., Cusack S. Large-scale induced fit recognition of an m(7)GpppG cap analogue by the human nuclear cap-binding complex. EMBO J. 2002, 21:5548-5557.
-
(2002)
EMBO J.
, vol.21
, pp. 5548-5557
-
-
Mazza, C.1
Segref, A.2
Mattaj, I.W.3
Cusack, S.4
-
35
-
-
2442466927
-
Cap-dependent and cap-independent translation in eukaryotic systems
-
Merrick W.C. Cap-dependent and cap-independent translation in eukaryotic systems. Gene 2004, 332:1-11.
-
(2004)
Gene
, vol.332
, pp. 1-11
-
-
Merrick, W.C.1
-
36
-
-
7444272009
-
Messenger RNA turnover in eukaryotes: pathways and enzymes
-
Meyer S., Temme C., Wahle E. Messenger RNA turnover in eukaryotes: pathways and enzymes. Crit. Rev. Biochem. Mol. Biol. 2004, 39:197-216.
-
(2004)
Crit. Rev. Biochem. Mol. Biol.
, vol.39
, pp. 197-216
-
-
Meyer, S.1
Temme, C.2
Wahle, E.3
-
37
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 1997, 276:307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
38
-
-
0017224213
-
Capping of eucaryotic mRNAs
-
Shatkin A.J. Capping of eucaryotic mRNAs. Cell 1976, 9:645-653.
-
(1976)
Cell
, vol.9
, pp. 645-653
-
-
Shatkin, A.J.1
-
39
-
-
70350090140
-
Real-time fluorescence detection of exoribonucleases
-
Sinturel F., Pellegrini O., Xiang S., Tong L., Condon C., Bénard L. Real-time fluorescence detection of exoribonucleases. RNA 2009, 15:2057-2062.
-
(2009)
RNA
, vol.15
, pp. 2057-2062
-
-
Sinturel, F.1
Pellegrini, O.2
Xiang, S.3
Tong, L.4
Condon, C.5
Bénard, L.6
-
40
-
-
78149426485
-
Multiple mRNA decapping enzymes in mammalian cells
-
Song M.G., Li Y., Kiledjian M. Multiple mRNA decapping enzymes in mammalian cells. Mol. Cell 2010, 40:423-432.
-
(2010)
Mol. Cell
, vol.40
, pp. 423-432
-
-
Song, M.G.1
Li, Y.2
Kiledjian, M.3
-
41
-
-
0034677202
-
Identification of an erythroid-enriched endoribonuclease activity involved in specific mRNA cleavage
-
Wang Z., Kiledjian M. Identification of an erythroid-enriched endoribonuclease activity involved in specific mRNA cleavage. EMBO J. 2000, 19:295-305.
-
(2000)
EMBO J.
, vol.19
, pp. 295-305
-
-
Wang, Z.1
Kiledjian, M.2
-
42
-
-
0036792078
-
The hDcp2 protein is a mammalian mRNA decapping enzyme
-
Wang Z., Jiao X., Carr-Schmid A., Kiledjian M. The hDcp2 protein is a mammalian mRNA decapping enzyme. Proc. Natl. Acad. Sci. USA 2002, 99:12663-12668.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12663-12668
-
-
Wang, Z.1
Jiao, X.2
Carr-Schmid, A.3
Kiledjian, M.4
-
43
-
-
64749111945
-
Structure and function of the 5'->3' exoribonuclease Rat1 and its activating partner Rai1
-
Xiang S., Cooper-Morgan A., Jiao X., Kiledjian M., Manley J.L., Tong L. Structure and function of the 5'->3' exoribonuclease Rat1 and its activating partner Rai1. Nature 2009, 458:784-788.
-
(2009)
Nature
, vol.458
, pp. 784-788
-
-
Xiang, S.1
Cooper-Morgan, A.2
Jiao, X.3
Kiledjian, M.4
Manley, J.L.5
Tong, L.6
-
44
-
-
0034073993
-
Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p
-
Xue Y., Bai X., Lee I., Kallstrom G., Ho J., Brown J., Stevens A., Johnson A.W. Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p. Mol. Cell. Biol. 2000, 20:4006-4015.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 4006-4015
-
-
Xue, Y.1
Bai, X.2
Lee, I.3
Kallstrom, G.4
Ho, J.5
Brown, J.6
Stevens, A.7
Johnson, A.W.8
-
45
-
-
79951678159
-
Nucleases: diversity of structure, function and mechanism
-
Yang W. Nucleases: diversity of structure, function and mechanism. Q. Rev. Biophys. 2011, 44:1-93.
-
(2011)
Q. Rev. Biophys.
, vol.44
, pp. 1-93
-
-
Yang, W.1
-
46
-
-
84860390478
-
Unraveling regulation and new components of human P-bodies through a protein interaction framework and experimental validation
-
Zheng D., Chen C.Y., Shyu A.B. Unraveling regulation and new components of human P-bodies through a protein interaction framework and experimental validation. RNA 2011, 17:1619-1634.
-
(2011)
RNA
, vol.17
, pp. 1619-1634
-
-
Zheng, D.1
Chen, C.Y.2
Shyu, A.B.3
|