-
1
-
-
33947202065
-
Crystal structure of murine CstF-77: Dimeric association and implications for polyadenylation of mRNA precursors
-
Bai Y, Auperin TC, Chou CY, Chang GG, Manley JL, Tong L. 2007. Crystal structure of murine CstF-77: Dimeric association and implications for polyadenylation of mRNA precursors. Mol Cell 25: 863-875.
-
(2007)
Mol Cell
, vol.25
, pp. 863-875
-
-
Bai, Y.1
Auperin, T.C.2
Chou, C.Y.3
Chang, G.G.4
Manley, J.L.5
Tong, L.6
-
2
-
-
34347384211
-
A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons
-
Boutz PL, Stoilov P, Li Q, Lin CH, Chawla G, Ostrow K, Shiue L, AresM Jr, Black DL. 2007. A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons. Genes Dev 21: 1636-1652.
-
(2007)
Genes Dev
, vol.21
, pp. 1636-1652
-
-
Boutz, P.L.1
Stoilov, P.2
Li, Q.3
Lin, C.H.4
Chawla, G.5
Ostrow, K.6
Shiue, L.7
Ares Jr., M.8
Black, D.L.9
-
3
-
-
84857761249
-
Pre-mRNA 3′-end processing complex assembly and function
-
Chan S, Choi EA, Shi Y. 2011. Pre-mRNA 3′-end processing complex assembly and function. Wiley Interdiscip Rev RNA 2: 321-335.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 321-335
-
-
Chan, S.1
Choi, E.A.2
Shi, Y.3
-
4
-
-
0030784958
-
Mechanism and regulation of mRNA polyadenylation
-
Colgan DF, Manley JL. 1997. Mechanism and regulation of mRNA polyadenylation. Genes Dev 11: 2755-2766.
-
(1997)
Genes Dev
, vol.11
, pp. 2755-2766
-
-
Colgan, D.F.1
Manley, J.L.2
-
5
-
-
34347378276
-
PTB/nPTB switch: A post-transcriptional mechanism for programming neuronal differentiation
-
Coutinho-Mansfield GC, Xue Y, Zhang Y, Fu XD. 2007. PTB/nPTB switch: A post-transcriptional mechanism for programming neuronal differentiation. Genes Dev 21: 1573-1577.
-
(2007)
Genes Dev
, vol.21
, pp. 1573-1577
-
-
Coutinho-Mansfield, G.C.1
Xue, Y.2
Zhang, Y.3
Fu, X.D.4
-
6
-
-
38949111543
-
3′ end mRNA processing: Molecular mechanisms and implications for health and disease
-
Danckwardt S, Hentze MW, Kulozik AE. 2008. 3′ end mRNA processing: Molecular mechanisms and implications for health and disease. EMBO J 27: 482-498.
-
(2008)
EMBO J
, vol.27
, pp. 482-498
-
-
Danckwardt, S.1
Hentze, M.W.2
Kulozik, A.E.3
-
7
-
-
38049138716
-
Loss of polyadenylation protein τCstF-64 causes spermatogenic defects and male infertility
-
Dass B, Tardif S, Park JY, Tian B, Weitlauf HM, Hess RA, Carnes K, Griswold MD, Small CL, Macdonald CC. 2007. Loss of polyadenylation protein τCstF-64 causes spermatogenic defects and male infertility. Proc Natl Acad Sci 104: 20374-20379.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 20374-20379
-
-
Dass, B.1
Tardif, S.2
Park, J.Y.3
Tian, B.4
Weitlauf, H.M.5
Hess, R.A.6
Carnes, K.7
Griswold, M.D.8
Small, C.L.9
Macdonald, C.C.10
-
8
-
-
84861903786
-
A quantitative atlas of polyadenylation in five mammals
-
Derti A, Garrett-Engele P, Macisaac KD, Stevens RC, Sriram S, Chen R, Rohl CA, Johnson JM, Babak T. 2012. A quantitative atlas of polyadenylation in five mammals. Genome Res 22: 1173-1183.
-
(2012)
Genome Res
, vol.22
, pp. 1173-1183
-
-
Derti, A.1
Garrett-Engele, P.2
Macisaac, K.D.3
Stevens, R.C.4
Sriram, S.5
Chen, R.6
Rohl, C.A.7
Johnson, J.M.8
Babak, T.9
-
9
-
-
80052979140
-
Mechanisms and consequences of alternative polyadenylation
-
Di Giammartino DC, Nishida K, Manley JL. 2011. Mechanisms and consequences of alternative polyadenylation. Mol Cell 43: 853-866.
-
(2011)
Mol Cell
, vol.43
, pp. 853-866
-
-
Di Giammartino, D.C.1
Nishida, K.2
Manley, J.L.3
-
10
-
-
84861302942
-
Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing
-
Dittmar KA, Jiang P, Park JW, Amirikian K, Wan J, Shen S, Xing Y, Carstens RP. 2012. Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing. Mol Cell Biol 32: 1468-1482.
-
(2012)
Mol Cell Biol
, vol.32
, pp. 1468-1482
-
-
Dittmar, K.A.1
Jiang, P.2
Park, J.W.3
Amirikian, K.4
Wan, J.5
Shen, S.6
Xing, Y.7
Carstens, R.P.8
-
11
-
-
32244447613
-
The mRNA encoding τCstF-64 is expressed ubiquitously in mouse tissues
-
Huber Z, Monarez RR, Dass B, MacDonald CC. 2005. The mRNA encoding τCstF-64 is expressed ubiquitously in mouse tissues. Ann N Y Acad Sci 1061: 163-172.
-
(2005)
Ann N Y Acad Sci
, vol.1061
, pp. 163-172
-
-
Huber, Z.1
Monarez, R.R.2
Dass, B.3
MacDonald, C.C.4
-
12
-
-
84860317107
-
The poly (A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites
-
Jenal M, Elkon R, Loayza-Puch F, van Haaften G, Kühn U, Menzies FM, Oude Vrielink JA, Bos AJ, Drost J, Rooijers K, et al. 2012. The poly (A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites. Cell 149: 538-553.
-
(2012)
Cell
, vol.149
, pp. 538-553
-
-
Jenal, M.1
Elkon, R.2
Loayza-Puch, F.3
Van Haaften, G.4
Kühn, U.5
Menzies, F.M.6
Oude Vrielink, J.A.7
Bos, A.J.8
Drost, J.9
Rooijers, K.10
-
13
-
-
66049104920
-
Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
-
Ji Z, Lee JY, Pan Z, Jiang B, Tian B. 2009. Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. Proc Natl Acad Sci 106: 7028-7033.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 7028-7033
-
-
Ji, Z.1
Lee, J.Y.2
Pan, Z.3
Jiang, B.4
Tian, B.5
-
14
-
-
33845675377
-
Knockdown of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3′-UTRs
-
Kubo T, Wada T, Yamaguchi Y, Shimizu A, Handa H. 2006. Knockdown of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3′-UTRs. Nucleic Acids Res 34: 6264-6271.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6264-6271
-
-
Kubo, T.1
Wada, T.2
Yamaguchi, Y.3
Shimizu, A.4
Handa, H.5
-
15
-
-
84868159213
-
The τCstF-64 polyadenylation protein controls genome expression in testis
-
Li W, Yeh HJ, Shankarling GS, Ji Z, Tian B, MacDonald CC. 2012. The τCstF-64 polyadenylation protein controls genome expression in testis. PLoS One 7: e48373.
-
(2012)
PLoS One
, vol.7
-
-
Li, W.1
Yeh, H.J.2
Shankarling, G.S.3
Ji, Z.4
Tian, B.5
MacDonald, C.C.6
-
16
-
-
84864020005
-
Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain
-
Licatalosi DD, Yano M, Fak JJ, Mele A, Grabinski SE, Zhang C, Darnell RB. 2012. Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain. Genes Dev 26: 1626-1642.
-
(2012)
Genes Dev
, vol.26
, pp. 1626-1642
-
-
Licatalosi, D.D.1
Yano, M.2
Fak, J.J.3
Mele, A.4
Grabinski, S.E.5
Zhang, C.6
Darnell, R.B.7
-
17
-
-
79954991435
-
Tissue-specific mechanisms of alternative polyadenylation: Testis, brain, and beyond
-
MacDonald CC, McMahon KW. 2010. Tissue-specific mechanisms of alternative polyadenylation: Testis, brain, and beyond. Wiley Interdiscip Rev RNA 1: 494-501.
-
(2010)
Wiley Interdiscip Rev RNA
, vol.1
, pp. 494-501
-
-
MacDonald, C.C.1
McMahon, K.W.2
-
18
-
-
84863093884
-
Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor I in the regulation of 3′ UTR length
-
Martin G, Gruber AR, Keller W, Zavolan M. 2012. Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor I in the regulation of 3′ UTR length. Cell Rep 1: 753-763.
-
(2012)
Cell Rep
, vol.1
, pp. 753-763
-
-
Martin, G.1
Gruber, A.R.2
Keller, W.3
Zavolan, M.4
-
19
-
-
68749113985
-
Widespread shortening of 3′UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
-
Mayr C, Bartel DP. 2009. Widespread shortening of 3′UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 138: 673-684.
-
(2009)
Cell
, vol.138
, pp. 673-684
-
-
Mayr, C.1
Bartel, D.P.2
-
20
-
-
33846861519
-
Polyadenylation proteins CstF-64 and τCstF-64 exhibit differential binding affinities for RNA polymers
-
Monarez RR, MacDonald CC, Dass B. 2007. Polyadenylation proteins CstF-64 and τCstF-64 exhibit differential binding affinities for RNA polymers. Biochem J 401: 651-658.
-
(2007)
Biochem J
, vol.401
, pp. 651-658
-
-
Monarez, R.R.1
MacDonald, C.C.2
Dass, B.3
-
21
-
-
80052447253
-
Ending the message: Poly(A) signals then and now
-
Proudfoot NJ. 2011. Ending the message: Poly(A) signals then and now. Genes Dev 25: 1770 -1782.
-
(2011)
Genes Dev
, vol.25
, pp. 1770-1782
-
-
Proudfoot, N.J.1
-
22
-
-
33847327963
-
The C-terminal domains of vertebrate CstF-64 and its yeast orthologue Rna15 form a new structure critical for mRNA 3′-end processing
-
Qu X, Perez-Canadillas JM, Agrawal S, De Baecke J, Cheng H, Varani G, Moore C. 2007. The C-terminal domains of vertebrate CstF-64 and its yeast orthologue Rna15 form a new structure critical for mRNA 3′-end processing. J Biol Chem 282: 2101-2115.
-
(2007)
J Biol Chem
, vol.282
, pp. 2101-2115
-
-
Qu, X.1
Perez-Canadillas, J.M.2
Agrawal, S.3
De Baecke, J.4
Cheng, H.5
Varani, G.6
Moore, C.7
-
23
-
-
78651105864
-
Interactions of CstF-64, CstF-77, and symplekin: Implications on localisation and function
-
Ruepp MD, Schweingruber C, Kleinschmidt N, Schümperli D. 2010. Interactions of CstF-64, CstF-77, and symplekin: Implications on localisation and function. Mol Biol Cell 22: 91-104.
-
(2010)
Mol Biol Cell
, vol.22
, pp. 91-104
-
-
Ruepp, M.D.1
Schweingruber, C.2
Kleinschmidt, N.3
Schümperli, D.4
-
24
-
-
79953014914
-
Complex and dynamic landscape of RNA polyadenylation revealed by PASSeq
-
Shepard PJ, Choi E, Lu J, Flanagan LA, Hertel KJ, Shi Y. 2011. Complex and dynamic landscape of RNA polyadenylation revealed by PASSeq. RNA 17: 761-772.
-
(2011)
RNA
, vol.17
, pp. 761-772
-
-
Shepard, P.J.1
Choi, E.2
Lu, J.3
Flanagan, L.A.4
Hertel, K.J.5
Shi, Y.6
-
25
-
-
84869765539
-
Alternative polyadenylation: New insights from global analyses
-
Shi Y. 2012. Alternative polyadenylation: New insights from global analyses. RNA 18: 2105-2117.
-
(2012)
RNA
, vol.18
, pp. 2105-2117
-
-
Shi, Y.1
-
26
-
-
59649122202
-
Molecular architecture of the human premRNA 3′ processing complex
-
Shi Y, Di Giammartino DC, Taylor D, Sarkeshik A, Rice WJ, Yates JR III, Frank J, Manley JL. 2009. Molecular architecture of the human premRNA 3′ processing complex. Mol Cell 33: 365-376.
-
(2009)
Mol Cell
, vol.33
, pp. 365-376
-
-
Shi, Y.1
Di Giammartino, D.C.2
Taylor, D.3
Sarkeshik, A.4
Rice, W.J.5
Yates III, J.R.6
Frank, J.7
Manley, J.L.8
-
27
-
-
84861179159
-
Global patterns of tissue-specific alternative polyadenylation in Drosophila
-
Smibert P, Miura P, Westholm JO, Shenker S, May G, Duff MO, Zhang D, Eads BD, Carlson J, Brown JB, et al. 2012. Global patterns of tissue-specific alternative polyadenylation in Drosophila. Cell Rep 1: 277-289.
-
(2012)
Cell Rep
, vol.1
, pp. 277-289
-
-
Smibert, P.1
Miura, P.2
Westholm, J.O.3
Shenker, S.4
May, G.5
Duff, M.O.6
Zhang, D.7
Eads, B.D.8
Carlson, J.9
Brown, J.B.10
-
28
-
-
0030920331
-
RNA recognition by the human polyadenylation factor CstF
-
Takagaki Y, Manley JL. 1997. RNA recognition by the human polyadenylation factor CstF. Mol Cell Biol 17: 3907-3914.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 3907-3914
-
-
Takagaki, Y.1
Manley, J.L.2
-
29
-
-
0033984159
-
Complex protein interactions within the human polyadenylation machinery identify a novel component
-
Takagaki Y, Manley JL. 2000. Complex protein interactions within the human polyadenylation machinery identify a novel component. Mol Cell Biol 20: 1515-1525.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 1515-1525
-
-
Takagaki, Y.1
Manley, J.L.2
-
30
-
-
0030606286
-
The polyadenylation factor CstF-64 regulates alternative processing of IgM heavy chain pre-mRNA during B cell differentiation
-
Takagaki Y, Seipelt RL, Peterson ML, Manley JL. 1996. The polyadenylation factor CstF-64 regulates alternative processing of IgM heavy chain pre-mRNA during B cell differentiation. Cell 87: 941-952.
-
(1996)
Cell
, vol.87
, pp. 941-952
-
-
Takagaki, Y.1
Seipelt, R.L.2
Peterson, M.L.3
Manley, J.L.4
-
31
-
-
84878151459
-
Alternative cleavage and polyadenylation: The long and short of it
-
Tian B, Manley JL. 2013. Alternative cleavage and polyadenylation: The long and short of it. Trends Biochem Sci 38: 312-320.
-
(2013)
Trends Biochem Sci
, vol.38
, pp. 312-320
-
-
Tian, B.1
Manley, J.L.2
-
32
-
-
0033536040
-
Two distinct forms of the 64,000 Mr protein of the cleavage stimulation factor are expressed in mouse male germ cells
-
Wallace AM, Dass B, Ravnik SE, Tonk V, Jenkins NA, Gilbert DJ, Copeland NG, MacDonald CC. 1999. Two distinct forms of the 64,000 Mr protein of the cleavage stimulation factor are expressed in mouse male germ cells. Proc Natl Acad Sci 96: 6763-6768.
-
(1999)
Proc Natl Acad Sci
, vol.96
, pp. 6763-6768
-
-
Wallace, A.M.1
Dass, B.2
Ravnik, S.E.3
Tonk, V.4
Jenkins, N.A.5
Gilbert, D.J.6
Copeland, N.G.7
MacDonald, C.C.8
-
33
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. 2008. Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
34
-
-
84869228761
-
Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation
-
Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y. 2012. Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation. Proc Natl Acad Sci 109: 18773-18778.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 18773-18778
-
-
Yao, C.1
Biesinger, J.2
Wan, J.3
Weng, L.4
Xing, Y.5
Xie, X.6
Shi, Y.7
-
35
-
-
0033059981
-
Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
Zhao J, Hyman L, Moore C. 1999. Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiol Mol Biol Rev 63: 405-445.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.3
|