Distinctive interactions of the Arabidopsis homolog of the 30 kD subunit of the cleavage and polyadenylation specificity factor (AtCPSF30) with other polyadenylation factor subunits

BMC Cell Biology

Volumn 10, Issue , 2009, Pages

  Rao, Suryadevara ^a   Dinkins, Randy D ^a,b   Hunt, Arthur G ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 160; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73; HYBRID PROTEIN; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; CPSF30 PROTEIN, ARABIDOPSIS; PROTEIN SUBUNIT;

AMINO TERMINAL SEQUENCE; ARABIDOPSIS; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL INTERACTION; CELL MEMBRANE; CELL NUCLEUS; CELLULAR DISTRIBUTION; CONTROLLED STUDY; EUKARYOTE; FLUORESCENCE; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYADENYLATION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; CYTOLOGY; GENETICS; METABOLISM; PLANT GENE; TOBACCO;

ARABIDOPSIS; EUKARYOTA; MAMMALIA;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; GENES, PLANT; MRNA CLEAVAGE AND POLYADENYLATION FACTORS; PROTEIN SUBUNITS; TOBACCO;

EID: 67749089601     PISSN: None     EISSN: 14712121     Source Type: Journal    
DOI: 10.1186/1471-2121-10-51     Document Type: Article

References (49)

1. Proudfoot N O'Sullivan J Polyadenylation: A tail of two complexes Curr Biol 2002, 12(24):R855-857. 10.1016/S0960-9822(02)01353-2 12498707
2. Wahle E Ruegsegger U 3'-End processing of pre-mRNA in eukaryotes FEMS Microbiol Rev 1999, 23(3):277-295. 10371034
3. Zhao J Hyman L Moore C Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis Microbiol Mol Biol Rev 1999, 63(2):405-445. 98971 10357856
4. Murthy KG Manley JL The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3'-end formation Genes Dev 1995, 9(21):2672-2683. 10.1101/gad.9.21.2672 7590244
5. Beyer K Dandekar T Keller W RNA ligands selected by cleavage stimulation factor contain distinct sequence motifs that function as downstream elements in 3'-end processing of pre-mRNA J Biol Chem 1997, 272(42):26769-26779. 10.1074/jbc.272.42.26769 9334264
6. MacDonald CC Wilusz J Shenk T The 64-kilodalton subunit of the CstF polyadenylation factor binds to pre-mRNAs downstream of the cleavage site and influences cleavage site location Mol Cell Biol 1994, 14(10):6647-6654. 359194 7935383
7. Takagaki Y Manley JL RNA recognition by the human polyadenylation factor CstF Mol Cell Biol 1997, 17(7):3907-3914. 232243 9199325
8. Kuhn U Wahle E Structure and function of poly(A) binding proteins Biochim Biophys Acta 2004, 1678(2-3):67-84. 15157733
9. Barabino SM Ohnacker M Keller W Distinct roles of two Yth1p domains in 3'-end cleavage and polyadenylation of yeast pre-mRNAs Embo J 2000, 19(14):3778-3787. 313971 10899131 10.1093/emboj/19.14.3778
10. Barabino SM Hubner W Jenny A Minvielle-Sebastia L Keller W The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins Genes Dev 1997, 11(13):1703-1716. 10.1101/gad.11.13.1703 9224719
11. Bai C Tolias PP Drosophila clipper/CPSF 30K is a post-transcriptionally regulated nuclear protein that binds RNA containing GC clusters Nucleic Acids Res 1998, 26(7):1597-1604. 147443 9512528 10.1093/nar/26.7.1597
12. Bai C Tolias PP Cleavage of RNA hairpins mediated by a developmentally regulated CCCH zinc finger protein Mol Cell Biol 1996, 16(12):6661-6667. 231668 8943320
13. Addepalli B Hunt AG A novel endonuclease activity associated with the Arabidopsis ortholog of the 30-kDa subunit of cleavage and polyadenylation specificity factor Nucleic Acids Res 2007, 35(13):4453-4463. 1935010 17576667 10.1093/nar/gkm457
14. Delaney KJ Xu R Zhang J Li QQ Yun KY Falcone DL Hunt AG Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit Plant Physiol 2006, 140(4):1507-1521. 1459842 16500995 10.1104/pp.105.070672
15. Tacahashi Y Helmling S Moore CL Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor Nucleic Acids Res 2003, 31(6):1744-1752. 152867 12626716 10.1093/nar/gkg265
16. Zhang J Addepalli B Yun K-Y Hunt AG Xu R Rao S Li QQ Falcone DL A Polyadenylation Factor Subunit Implicated in Regulating Oxidative Signaling in Arabidopsis thaliana PLoS ONE 2008, 3(6):e2410. 2408970 18545667 10.1371/journal.pone.0002410
17. Addepalli B Hunt AG Redox and heavy metal effects on the biochemical activities of an Arabidopsis polyadenylation factor subunit Arch Biochem Biophys 2008, 473(1):88-95. 10.1016/j.abb.2008.02.027 18331819
18. Hunt AG Xu R Addepalli B Rao S Forbes KP Meeks LR Xing D Mo M Zhao H Bandyopadhyay A et al Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling BMC Genomics 2008, 9:220. 2391170 18479511 10.1186/ 1471-2164-9-220
19. Goodin MM Dietzgen RG Schichnes D Ruzin S Jackson AO pGD vectors: versatile tools for the expression of green and red fluorescent protein fusions in agroinfiltrated plant leaves Plant J 2002, 31(3):375-383. 10.1046/j.1365-313X.2002.01360.x 12164816
20. Dinkins RD Majee SM Nayak NR Martin D Xu Q Belcastro MP Houtz RL Beach CM Downie AB Changing transcriptional initiation sites and alternative 5′- and 3′-splice site selection of the first intron deploys Arabidopsis PROTEIN ISOASPARTYL METHYLTRANSFERASE2 variants to different subcellular compartments Plant J 2008, 55(1):1-13. 10.1111/ j.1365-313X.2008.03471.x 18318686
21. Haseloff J Siemering KR Prasher DC Hodge S Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly Proc Natl Acad Sci USA 1997, 94(6):2122-2127. 20051 9122158 10.1073/pnas.94.6.2122
22. Dinkins RD Pflipsen C Collins GB Expression and deletion analysis of an Arabidopsis SUPERMAN-like zinc finger gene Plant Sci 2003, 165:33-41. 10.1016/S0168-9452(03)00123-7
23. Deng M Bragg JN Ruzin S Schichnes D King D Goodin MM Jackson AO Role of the sonchus yellow net virus N protein in formation of nuclear viroplasms J Virol 2007, 81(10):5362-5374. 1900228 17344300 10.1128/ JVI.02349-06
24. Goodin MM Austin J Tobias R Fujita M Morales C Jackson AO Interactions and nuclear import of the N and P proteins of sonchus yellow net virus, a plant nucleorhabdovirus J Virol 2001, 75(19):9393-9406. 114507 11533202 10.1128/JVI.75.19.9393-9406.2001
25. Parker R Sheth U P bodies and the control of mRNA translation and degradation Mol Cell 2007, 25(5):635-646. 10.1016/j.molcel.2007.02.011 17349952
26. Eulalio A Behm-Ansmant I Izaurralde E P bodies: At the crossroads of post-transcriptional pathways Nat Rev Mol Cell Biol 2007, 8(1):9-22. 10.1038/nrm2080 17183357
27. Gunawardana D Cheng HC Gayler KR Identification of functional domains in Arabidopsis thaliana mRNA decapping enzyme (AtDcp2) Nucleic Acids Res 2008, 36(1):203-216. 2248764 18025047 10.1093/nar/gkm1002
28. Iwasaki S Takeda A Motose H Watanabe Y Characterization of Arabidopsis decapping proteins AtDCP1 and AtDCP2, which are essential for post-embryonic development FEBS Lett 2007, 581(13):2455-2459. 10.1016/ j.febslet.2007.04.051 17485080
29. Xu J Yang JY Niu QW Chua NH Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development Plant Cell 2006, 18(12):3386-3398. 1785416 17158604 10.1105/tpc.106.047605
30. Xu R Zhao H Dinkins RD Cheng X Carberry G Li QQ The 73 kD subunit of the cleavage and polyadenylation specificity factor (CPSF) complex affects reproductive development in Arabidopsis Plant Mol Biol 2006, 61(4-5):799-815. 10.1007/s11103-006-0051-6 16897494
31. Forbes KP Addepalli B Hunt AG An Arabidopsis Fip1 homolog interacts with RNA and provides conceptual links with a number of other polyadenylation factor subunits J Biol Chem 2006, 281(1):176-186. 10.1074/jbc.M510964200 16282318
32. Xu R Ye X Quinn Li Q AtCPSF73-II gene encoding an Arabidopsis homolog of CPSF 73 kDa subunit is critical for early embryo development Gene 2004, 324:35-45. 10.1016/j.gene.2003.09.025 14693369
33. Huang H Bader JS Precision and recall estimates for two-hybrid screens Bioinformatics 2009, 25(3):372-378. 2639075 19091773 10.1093/ bioinformatics/btn640
34. Huang H Jedynak BM Bader JS Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps PLoS Comput Biol 2007, 3(11):e214. 2082503 18039026 10.1371/ journal.pcbi.0030214
35. Nemeroff ME Barabino SM Li Y Keller W Krug RM Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3'end formation of cellular pre-mRNAs Mol Cell 1998, 1(7):991-1000. 10.1016/S1097-2765(00)80099-4 9651582
36. Twu KY Kuo RL Marklund J Krug RM The H5N1 influenza virus NS genes selected after 1998 enhance virus replication in mammalian cells J Virol 2007, 81(15):8112-8121. 1951328 17522219 10.1128/JVI.00006-07
37. Twu KY Noah DL Rao P Kuo RL Krug RM The CPSF30 binding site on the NS1A protein of influenza A virus is a potential antiviral target J Virol 2006, 80(8):3957-3965. 1440456 16571812 10.1128/JVI.80.8.3957-3965.2006
38. Kaufmann I Martin G Friedlein A Langen H Keller W Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase EMBO J 2004, 23(3):616-626. 1271804 14749727 10.1038/ sj.emboj.7600070
39. Helmling S Zhelkovsky A Moore CL Fip1 regulates the activity of Poly(A) polymerase through multiple interactions Mol Cell Biol 2001, 21(6):2026-2037. 86804 11238938 10.1128/MCB.21.6.2026-2037.2001
40. Malhotra JD Kaufman RJ The endoplasmic reticulum and the unfolded protein response Semin Cell Dev Biol 2007, 18(6):716-731. 10.1016/ j.semcdb.2007.09.003 18023214
41. Schroder M Endoplasmic reticulum stress responses Cell Mol Life Sci 2008, 65(6):862-894. 10.1007/s00018-007-7383-5 18038217
42. Sitia R Molteni SN Stress, protein (mis)folding, and signaling: The redox connection Sci STKE 2004, 2004(239):pE27. 10.1126/stke.2392004pe27 15226511
43. Ron D Walter P Signal integration in the endoplasmic reticulum unfolded protein response Nat Rev Mol Cell Biol 2007, 8(7):519-529. 10.1038/ nrm2199 17565364
44. Goodin MM Chakrabarty R Banerjee R Yelton S Debolt S New gateways to discovery Plant Physiol 2007, 145(4):1100-1109. 2151732 18056860 10.1104/ pp.107.106641
45. Dickson KS Bilger A Ballantyne S Wickens MP The cleavage and polyadenylation specificity factor in Xenopus laevis oocytes is a cytoplasmic factor involved in regulated polyadenylation Mol Cell Biol 1999, 19(8):5707-5717. 84422 10409759
46. Curtis MD Grossniklaus U A Gateway Cloning Vector Set for High-Throughput Functional Analysis of Genes in Planta Plant Physiol 2003, 133(2):462-469. 523872 14555774 10.1104/pp.103.027979
47. Chakrabarty R Banerjee R Chung SM Farman M Citovsky V Hogenhout SA Tzfira T Goodin M PSITE vectors for stable integration or transient expression of autofluorescent protein fusions in plants: Probing Nicotiana benthamiana-virus interactions Mol Plant Microbe Interact 2007, 20(7):740-750. 10.1094/MPMI-20-7-0740 17601162
48. Dinkins RD Reddy MSS Meurer CA Redmond CT Collins GB Recent advances in soybean transformation Applied Genetics of Leguminosae Biotechnology Secaucus, NJ: Springer Science + Business Media Jaiwal PK, Singh RP 2004:3-21.
49. Meadows MG Potrykus I Hoechst 33258 as a vital stain for plant cell protoplasts Plant Cell Reports 1981, 1(2):77-79. 10.1007/BF00269279