What is the role of RNase J in mRNA turnover?

RNA Biology

Volumn 7, Issue 3, 2010, Pages

  Condon, Ciarán ^a  

^a INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

Author keywords

5 to 3 exoribonuclease; Complex; Endoribonuclease; RNase J1; RNase J2

Indexed keywords

MESSENGER RNA; RIBONUCLEASE;

ANIMAL; BACILLUS SUBTILIS; BIOLOGICAL MODEL; ENZYME ACTIVATION; ENZYMOLOGY; GENETICS; HUMAN; METABOLISM; PHYSIOLOGY; REVIEW; RNA STABILITY;

ANIMALS; BACILLUS SUBTILIS; ENZYME ACTIVATION; HUMANS; MODELS, BIOLOGICAL; RIBONUCLEASES; RNA STABILITY; RNA, MESSENGER;

EID: 77955412028     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.7.3.11913     Document Type: Review

References (34)

1. Condon C, Putzer H, Grunberg-Manago M. Processing of the leader mRNA plays a major role in the induction of thrS expression following threonine starvation in B. subtilis. Proc Natl Acad Sci USA 1996; 93:6992-7.
2. Condon C, Putzer H, Luo D, Grunberg-Manago M. Processing of the Bacillus subtilis thrS leader mRNA is RNase E-dependent in Escherichia coli. J Mol Biol 1997; 268:235-42.
3. Britton RA, Wen T, Schaefer L, Pellegrini O, Uicker WC, Mathy N, et al. Maturation of the 5′ end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1. Mol Microbiol 2007; 63:127-38.
4. Even S, Pellegrini O, Zig L, Labas V, Vinh J, Brechemmier-Baey D, et al. Ribonucleases J1 and J2: two novel endoribonucleases in B. subtilis with functional homology to E. coli RNase E. Nucleic Acids Res 2005; 33:2141-52.
5. Hunt A, Rawlins JP, Thomaides HB, Errington J. Functional analysis of 11 putative essential genes in Bacillus subtilis. Microbiology 2006; 152:2895-907.
6. Mathy N, Benard L, Pellegrini O, Daou R, Wen T, Condon C. 5′-to-3′ exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA. Cell 2007; 129:681-92.
7. Deikus G, Condon C, Bechhofer DH. Role of Bacillus subtilis RNase J1 endonuclease and 5′-exonuclease activities in trp leader RNA turnover. J Biol Chem 2008; 283:17158-67.
8. Li de la Sierra-Gallay I, Zig L, Jamalli A, Putzer H. Structural insights into the dual activity of RNase J. Nat Struct Mol Biol 2008; 15:206-12.
9. Mathy N, Hebert A, Mervelet P, Benard L, Dorleans A, de la Sierra-Gallay IL, et al. Bacillus subtilis ribonucleases J1 and J2 form a complex with altered enzyme behaviour. Mol Microbiol 2010; 75:489-98.
10. Commichau FM, Rothe FM, Herzberg C, Wagner E, Hellwig D, Lehnik-Habrink M, et al. Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing. Mol Cell Proteomics 2009; 8:1350-60.
11. Mader U, Zig L, Kretschmer J, Homuth G, Putzer H. mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale. Mol Microbiol 2008; 70:183-96.
12. Daou-Chabo R, Mathy N, Benard L, Condon C. Ribosomes initiating translation of the hbs mRNA protect it from 5′-to-3′ exoribonucleolytic degradation by RNase J1. Mol Microbiol 2009; 71:1538-50.
13. Collins JA, Irnov I, Baker S, Winkler WC. Mechanism of mRNA destabilization by the glmS ribozyme. Genes Dev 2007; 21:3356-68.
14. Condon C. RNA processing and degradation in Bacillus subtilis. Microbiol Mol Biol Rev 2003; 67:157-74.
15. Joyce SA, Dreyfus M. In the absence of translation, RNase E can bypass 5′ mRNA stabilizers in Escherichia coli. J Mol Biol 1998; 282:241-54.
16. Sandler P, Weisblum B. Erythromycin-induced ribosome stall in the ermA leader: a barricade to 5′-to-3′ nucleolytic cleavage of the ermA transcript. J Bacteriol 1989; 171:6680-8.
17. DiMari JF, Bechhofer DH. Initiation of mRNA decay in Bacillus subtilis. Mol Microbiol 1993; 7:705-17.
18. Hue KK, Cohen SD, Bechhofer DH. A polypurine sequence that acts as a 5′ mRNA stabilizer in Bacillus subtilis. J Bacteriol 1995; 177:3465-71.
19. Agaisse H, Lereclus D. STAB-SD: a Shine-Dalgarno sequence in the 5' untranslated region is a determinant of mRNA stability. Mol Microbiol 1996; 20:633-43.
20. Yao S, Bechhofer DH. Processing and stability of inducibly expressed rpsO mRNA derivatives in Bacillus subtilis. J Bacteriol 2009; 191:5680-9.
21. Drider D, DiChiara JM, Wei J, Sharp JS, Bechhofer DH. Endonuclease cleavage of messenger RNA in Bacillus subtilis. Mol Microbiol 2002; 43:1319-29.
22. Yao S, Blaustein JB, Bechhofer DH. Erythromycin-induced ribosome stalling and RNase J1-mediated mRNA processing in Bacillus subtilis. Mol Microbiol 2008; 69:1439-49.
23. Yao S, Sharp JS, Bechhofer DH. Bacillus subtilis RNase J1 endonuclease and 5′ exonuclease activities in the turnover of .ermC mRNA. Rna 2009; 15:2331-9.
24. Deana A, Celesnik H, Belasco JG. The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal. Nature 2008; 451:355-8.
25. Deikus G, Babitzke P, Bechhofer DH. Recycling of a regulatory protein by degradation of the RNA to which it binds. Proc Natl Acad Sci USA 2004; 101:2747-51.
26. Deikus G, Bechhofer DH. Bacillus subtilis trp Leader RNA: RNase J1 endonuclease cleavage specificity and PNPase processing. J Biol Chem 2009; 284:26394-401.
27. Yao S, Blaustein JB, Bechhofer DH. Processing of Bacillus subtilis small cytoplasmic RNA: evidence for an additional endonuclease cleavage site. Nucleic Acids Res 2007; 35:4464-73.
28. Bugrysheva JV, Scott JR. The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes. Mol Microbiol 2010; 75:731-43.
29. Madhugiri R, Evguenieva-Hackenberg E. RNase J is involved in the 5′-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti. FEBS Lett 2009; 583:2339-42.
30. Redko Y, Condon C. Maturation of 23S rRNA in B. subtilis in the absence of Mini-III. J Bacteriol 2010; 192:356-9.
31. Hasenohrl D, Lombo T, Kaberdin V, Londei P, Blasi U. Translation initiation factor a/eIF2(-gamma) counteracts 5′ to 3′ mRNA decay in the archaeon Sulfolobus solfataricus. Proc Natl Acad Sci USA 2008; 105:2146-50.
32. Yang XC, Sullivan KD, Marzluff WF, Dominski Z. Studies of the 5′ exonuclease and endonuclease activities of CPSF-73 in histone pre-mRNA processing. Mol Cell Biol 2009; 29:31-42.
33. Daou-Chabo R, Condon C. RNase J1 endonuclease activity as a probe of RNA secondary structure. RNA 2009; 15:1417-25.
34. Shahbabian K, Jamalli A, Zig L, Putzer H. RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J 2009; 28:3523-33.