-
1
-
-
0004228157
-
DNA Repair and Mutagenesis
-
2nd edn, ASM Press, Washington, DC
-
Friedberg, E.C., Walker, G.C., Siede, W., Wood, R.D., Shchultz, R.A., and Ellenberger, T. (2005) DNA Repair and Mutagenesis, 2nd edn, ASM Press, Washington, DC.
-
(2005)
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
Wood, R.D.4
Shchultz, R.A.5
Ellenberger, T.6
-
2
-
-
0021282448
-
DNA repair protects against cutaneous and internal neoplasia: evidence from xeroderma pigmentosum
-
Kraemer, K.H., Lee, M.M., and Scotto, J. (1984) DNA repair protects against cutaneous and internal neoplasia: evidence from xeroderma pigmentosum. Carcinogenesis, 5, 511-514.
-
(1984)
Carcinogenesis
, vol.5
, pp. 511-514
-
-
Kraemer, K.H.1
Lee, M.M.2
Scotto, J.3
-
3
-
-
0023130695
-
Xeroderma pigmentosum
-
Kraemer, K.H., Lee, M.M., and Scotto, J. (1987) Xeroderma pigmentosum. Cutaneous, ocular, and neurologic abnormalities in 830 published cases. Arch. Dermatol., 123, 241-250.
-
(1987)
Cutaneous, ocular, and neurologic abnormalities in 830 published cases. Arch. Dermatol.
, vol.123
, pp. 241-250
-
-
Kraemer, K.H.1
Lee, M.M.2
Scotto, J.3
-
4
-
-
0026508774
-
Cockayne syndrome: review of 140 cases
-
Nance, M.A. and Berry, S.A. (1992) Cockayne syndrome: review of 140 cases. Am. J. Med. Genet., 42, 68-84.
-
(1992)
Am. J. Med. Genet.
, vol.42
, pp. 68-84
-
-
Nance, M.A.1
Berry, S.A.2
-
5
-
-
34247169028
-
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship
-
Kraemer, K.H., Patronas, N.J., Schiffmann, R., Brooks, B.P., Tamura, D., and DiGiovanna, J.J. (2007) Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship. Neuroscience, 145, 1388-1396.
-
(2007)
Neuroscience
, vol.145
, pp. 1388-1396
-
-
Kraemer, K.H.1
Patronas, N.J.2
Schiffmann, R.3
Brooks, B.P.4
Tamura, D.5
DiGiovanna, J.J.6
-
6
-
-
40949130371
-
Platinum resistance: the role of DNA repair pathways
-
Martin, L.P., Hamilton, T.C., and Schilder, R.J. (2008) Platinum resistance: the role of DNA repair pathways. Clin. Cancer Res., 14, 1291-1295.
-
(2008)
Clin. Cancer Res.
, vol.14
, pp. 1291-1295
-
-
Martin, L.P.1
Hamilton, T.C.2
Schilder, R.J.3
-
7
-
-
32644450616
-
Molecular mechanisms of mammalian global genome nucleotide excision repair
-
Gillet, L.C. and Scharer, O.D. (2006) Molecular mechanisms of mammalian global genome nucleotide excision repair. Chem. Rev., 106, 253-276.
-
(2006)
Chem. Rev.
, vol.106
, pp. 253-276
-
-
Gillet, L.C.1
Scharer, O.D.2
-
8
-
-
38049164275
-
Eukaryotic nucleotide excision repair: from understanding mechanisms to infl uencing biology
-
Shuck, S.C., Short, E.A., and Turchi, J.J. (2008) Eukaryotic nucleotide excision repair: from understanding mechanisms to infl uencing biology. Cell Res., 18, 64-72.
-
(2008)
Cell Res.
, vol.18
, pp. 64-72
-
-
Shuck, S.C.1
Short, E.A.2
Turchi, J.J.3
-
9
-
-
38049178545
-
Transcription-coupled nucleotide excision repair in mammalian cells: molecular mechanisms and biological effects
-
Fousteri, M. and Mullenders, L.H. (2008) Transcription-coupled nucleotide excision repair in mammalian cells: molecular mechanisms and biological effects. Cell Res., 18, 73-84.
-
(2008)
Cell Res.
, vol.18
, pp. 73-84
-
-
Fousteri, M.1
Mullenders, L.H.2
-
10
-
-
0032499719
-
Assembly, subunit composition, and footprint of human DNA repair excision nuclease
-
Wakasugi, M. and Sancar, A. (1998) Assembly, subunit composition, and footprint of human DNA repair excision nuclease. P roc. Natl. Acad. Sci. USA, 95, 6669-6674.
-
(1998)
P roc. Natl. Acad. Sci. USA
, vol.95
, pp. 6669-6674
-
-
Wakasugi, M.1
Sancar, A.2
-
11
-
-
0028948394
-
Mammalian DNA nucleotide excision repair reconstituted with purifi ed protein components
-
Aboussekhra, A., Biggerstaff, M., Shivji, M.K., Vilpo, J.A., Moncollin, V., Podust, V.N., Protic, M., Hubscher, U., Egly, J.M., and Wood, R.D. (1995) Mammalian DNA nucleotide excision repair reconstituted with purifi ed protein components. Cell, 80, 859-868.
-
(1995)
Cell
, vol.80
, pp. 859-868
-
-
Aboussekhra, A.1
Biggerstaff, M.2
Shivji, M.K.3
Vilpo, J.A.4
Moncollin, V.5
Podust, V.N.6
Protic, M.7
Hubscher, U.8
Egly, J.M.9
Wood, R.D.10
-
12
-
-
0032134423
-
Xeroderma pig mentosum group C protein complex is the initiator of global genome nucleotide excision repair
-
Sugasawa, K., Ng, J.M., Masutani, C., Iwai, S., van der Spek, P.J., Eker, A.P., Hanaoka, F., Bootsma, D., and Hoeijmakers, J.H. (1998) Xeroderma pig mentosum group C protein complex is the initiator of global genome nucleotide excision repair. Mol. Cell, 2, 223-232.
-
(1998)
Mol. Cell
, vol.2
, pp. 223-232
-
-
Sugasawa, K.1
Ng, J.M.2
Masutani, C.3
Iwai, S.4
van der Spek, P.J.5
Eker, A.P.6
Hanaoka, F.7
Bootsma, D.8
Hoeijmakers, J.H.9
-
13
-
-
0035282109
-
A multistep damage recognition mechanism for global genomic nucleotide excision repair
-
Sugasawa, K., Okamoto, T., Shimizu, Y., Masutani, C., Iwai, S., and Hanaoka, F. (2001) A multistep damage recognition mechanism for global genomic nucleotide excision repair. Genes Dev., 15, 507-521.
-
(2001)
Genes Dev.
, vol.15
, pp. 507-521
-
-
Sugasawa, K.1
Okamoto, T.2
Shimizu, Y.3
Masutani, C.4
Iwai, S.5
Hanaoka, F.6
-
14
-
-
0030732132
-
Mechanism of open complex and dual incision formation by human nucleotide excision repair factors
-
Evans, E., Moggs, J.G., Hwang, J.R., Egly, J.M., and Wood, R.D. (1997) Mechanism of open complex and dual incision formation by human nucleotide excision repair factors. EMBO J., 16, 6559-6573.
-
(1997)
EMBO J.
, vol.16
, pp. 6559-6573
-
-
Evans, E.1
Moggs, J.G.2
Hwang, J.R.3
Egly, J.M.4
Wood, R.D.5
-
15
-
-
0037150494
-
The carboxy-terminal domain of the XPC protein plays a crucial role in nucleotide excision repair through interactions with transcription factor IIH
-
Uchida, A., Sugasawa, K., Masutani, C., Dohmae, N., Araki, M., Yokoi, M., Ohkuma, Y., and Hanaoka, F. (2002) The carboxy-terminal domain of the XPC protein plays a crucial role in nucleotide excision repair through interactions with transcription factor IIH. DNA Repair, 1, 449-461.
-
(2002)
DNA Repair
, vol.1
, pp. 449-461
-
-
Uchida, A.1
Sugasawa, K.2
Masutani, C.3
Dohmae, N.4
Araki, M.5
Yokoi, M.6
Ohkuma, Y.7
Hanaoka, F.8
-
16
-
-
0034737426
-
The xeroderma pigmentosum group C protein complex XPC-HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA
-
Yokoi, M., Masutani, C., Maekawa, T., Sugasawa, K., Ohkuma, Y., and Hanaoka, F. (2000) The xeroderma pigmentosum group C protein complex XPC-HR23B plays an important role in the recruitment of transcription factor IIH to damaged DNA. J. Biol. Chem., 275, 9870-9875.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 9870-9875
-
-
Yokoi, M.1
Masutani, C.2
Maekawa, T.3
Sugasawa, K.4
Ohkuma, Y.5
Hanaoka, F.6
-
17
-
-
0141753120
-
The comings and goings of nucleotide excision repair factors on damaged DNA
-
Riedl, T., Hanaoka, F., and Egly, J.M. (2003) The comings and goings of nucleotide excision repair factors on damaged DNA. EMBO J., 22, 5293-5303.
-
(2003)
EMBO J.
, vol.22
, pp. 5293-5303
-
-
Riedl, T.1
Hanaoka, F.2
Egly, J.M.3
-
18
-
-
2442586630
-
Ordered conformational changes in damaged DNA induced by nucleotide excision repair factors
-
Tapias, A., Auriol, J., Forget, D., Enzlin, J.H., Scharer, O.D., Coin, F., Coulombe, B., and Egly, J.M. (2004) Ordered conformational changes in damaged DNA induced by nucleotide excision repair factors. J. Biol. Chem., 279, 19074-19083.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 19074-19083
-
-
Tapias, A.1
Auriol, J.2
Forget, D.3
Enzlin, J.H.4
Scharer, O.D.5
Coin, F.6
Coulombe, B.7
Egly, J.M.8
-
20
-
-
33644619706
-
Prokaryotic nucleotide excision repair: the UvrABC system
-
Truglio, J.J., Croteau, D.L., Van Houten, B., and Kisker, C. (2006) Prokaryotic nucleotide excision repair: the UvrABC system. Chem. Rev., 106, 233-252.
-
(2006)
Chem. Rev.
, vol.106
, pp. 233-252
-
-
Truglio, J.J.1
Croteau, D.L.2
Houten, V.B.3
Kisker, C.4
-
21
-
-
0027350849
-
Mechanism of action of the Escherichia coli UvrABC nuclease: clues to the damage recognition problem
-
Van Houten, B. and Snowden, A. (1993) Mechanism of action of the Escherichia coli UvrABC nuclease: clues to the damage recognition problem. Bioessays, 15, 51-59.
-
(1993)
Bioessays
, vol.15
, pp. 51-59
-
-
Houten, V.B.1
Snowden, A.2
-
22
-
-
0029840823
-
Recognition of DNA adducts by human nucleotide excision repair
-
Gunz, D., Hess, M.T., and Naegeli, H. (1996) Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism. J. Biol. Chem., 271, 25089-25098.
-
(1996)
Evidence for a thermodynamic probing mechanism. J. Biol. Chem.
, vol.271
, pp. 25089-25098
-
-
Gunz, D.1
Hess, M.T.2
Naegeli, H.3
-
23
-
-
0032742715
-
DNA damage recognition during nucleotide excision repair in mammalian cells
-
Wood, R.D. (1999) DNA damage recognition during nucleotide excision repair in mammalian cells. Biochimie, 81, 39-44.
-
(1999)
Biochimie
, vol.81
, pp. 39-44
-
-
Wood, R.D.1
-
24
-
-
38149019888
-
A molecular basis for damage recognition in eukaryotic nucleotide excision repair
-
Scharer, O.D. (2008) A molecular basis for damage recognition in eukaryotic nucleotide excision repair. ChemBio-Chem, 9, 21-23.
-
(2008)
ChemBio-Chem
, vol.9
, pp. 21-23
-
-
Scharer, O.D.1
-
25
-
-
1842785956
-
A model for initial DNA lesion recognition by NER and MMR based on local conformational fl exibility
-
Isaacs, R.J. and Spielmann, H.P. (2004) A model for initial DNA lesion recognition by NER and MMR based on local conformational fl exibility. DNA Repair, 3, 455-464.
-
(2004)
DNA Repair
, vol.3
, pp. 455-464
-
-
Isaacs, R.J.1
Spielmann, H.P.2
-
26
-
-
35548986675
-
Dynamics of a benzo[ a ]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, fl exible bending, and greater susceptibility to nucleotide excision repair
-
Cai, Y., Patel, D.J., Geacintov, N.E., and Broyde, S. (2007) Dynamics of a benzo[ a ]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, fl exible bending, and greater susceptibility to nucleotide excision repair. J. Mol. Biol., 374, 292-305.
-
(2007)
J. Mol. Biol.
, vol.374
, pp. 292-305
-
-
Cai, Y.1
Patel, D.J.2
Geacintov, N.E.3
Broyde, S.4
-
27
-
-
0035796455
-
Double-check probing of DNA bending and unwinding by XPA-RPA: an architectural function in DNA repair
-
Missura, M., Buterin, T., Hindges, R., Hubscher, U., Kasparkova, J., Brabec, V., and Naegeli, H. (2001) Double-check probing of DNA bending and unwinding by XPA-RPA: an architectural function in DNA repair. EMBO J., 20, 3554-3564.
-
(2001)
EMBO J.
, vol.20
, pp. 3554-3564
-
-
Missura, M.1
Buterin, T.2
Hindges, R.3
Hubscher, U.4
Kasparkova, J.5
Brabec, V.6
Naegeli, H.7
-
28
-
-
33745239225
-
Ultra-violet light induced changes in DNA dynamics may enhance TT-dimer recognition
-
Blagoev, K.B., Alexandrov, B.S., Goodwin, E.H., and Bishop, A.R. (2006) Ultra-violet light induced changes in DNA dynamics may enhance TT-dimer recognition. DNA Repair, 5, 863-867.
-
(2006)
DNA Repair
, vol.5
, pp. 863-867
-
-
Blagoev, K.B.1
Alexandrov, B.S.2
Goodwin, E.H.3
Bishop, A.R.4
-
29
-
-
43149102700
-
Versatile protection from mutagenic DNA lesions conferred by bipartite recognition in nucleotide excision repair
-
Maillard, O., Camenisch, U., Blagoev, K.B., and Naegeli, H. (2008) Versatile protection from mutagenic DNA lesions conferred by bipartite recognition in nucleotide excision repair. Mutat. Res., 658, 271-286.
-
(2008)
Mutat. Res.
, vol.658
, pp. 271-286
-
-
Maillard, O.1
Camenisch, U.2
Blagoev, K.B.3
Naegeli, H.4
-
30
-
-
35548987856
-
DNA repair triggered by sensors of helical dynamics
-
Maillard, O., Camenisch, U., Clement, F.C., Blagoev, K.B., and Naegeli, H. (2007) DNA repair triggered by sensors of helical dynamics. Trends Biochem. Sci., 32, 494-499.
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 494-499
-
-
Maillard, O.1
Camenisch, U.2
Clement, F.C.3
Blagoev, K.B.4
Naegeli, H.5
-
31
-
-
33646768613
-
Poor base stacking at DNA lesions may initiate recognition by many repair proteins
-
Yang, W. (2006) Poor base stacking at DNA lesions may initiate recognition by many repair proteins. DNA Repair, 5, 654-666.
-
(2006)
DNA Repair
, vol.5
, pp. 654-666
-
-
Yang, W.1
-
32
-
-
38049110204
-
Structure and mechanism for DNA lesion recognition
-
Yang, W. (2008) Structure and mechanism for DNA lesion recognition. Cell Res., 18, 184-197.
-
(2008)
Cell Res.
, vol.18
, pp. 184-197
-
-
Yang, W.1
-
33
-
-
12644312174
-
Bipartite substrate discrimination by human nucleotide excision repair
-
Hess, M.T., Schwitter, U., Petretta, M., Giese, B., and Naegeli, H. (1997) Bipartite substrate discrimination by human nucleotide excision repair. Proc. Natl. Acad. Sci. USA, 94, 6664-6669.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6664-6669
-
-
Hess, M.T.1
Schwitter, U.2
Petretta, M.3
Giese, B.4
Naegeli, H.5
-
34
-
-
0033538572
-
Characterization of DNA recognition by the human UV-damaged DNA-binding protein
-
Fujiwara, Y., Masutani, C., Mizukoshi, T., Kondo, J., Hanaoka, F., and Iwai, S. (1999) Characterization of DNA recognition by the human UV-damaged DNA-binding protein. J. Biol. Chem., 274, 20027-20033.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 20027-20033
-
-
Fujiwara, Y.1
Masutani, C.2
Mizukoshi, T.3
Kondo, J.4
Hanaoka, F.5
Iwai, S.6
-
35
-
-
0036012799
-
A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex
-
Sugasawa, K., Shimizu, Y., Iwai, S., and Hanaoka, F. (2002) A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex. DNA Repair, 1, 95-107.
-
(2002)
DNA Repair
, vol.1
, pp. 95-107
-
-
Sugasawa, K.1
Shimizu, Y.2
Iwai, S.3
Hanaoka, F.4
-
36
-
-
75749154031
-
Dynamic two-stage mechanism of versatile DNA damage recognition by xeroderma pigmentosum group C protein
-
Clement, F.C., Camenisch, U., Fei, J., Kaczmarek, N., Mathieu, N., and Naegeli, H. (2010) Dynamic two-stage mechanism of versatile DNA damage recognition by xeroderma pigmentosum group C protein. Mutat Res., 685, 21-28.
-
(2010)
Mutat Res.
, vol.685
, pp. 21-28
-
-
Clement, F.C.1
Camenisch, U.2
Fei, J.3
Kaczmarek, N.4
Mathieu, N.5
Naegeli, H.6
-
37
-
-
34948892722
-
Recognition of DNA damage by the Rad4 nucleotide excision repair protein
-
Min, J.H. and Pavletich, N.P. (2007) Recognition of DNA damage by the Rad4 nucleotide excision repair protein. Nature, 449, 570-575.
-
(2007)
Nature
, vol.449
, pp. 570-575
-
-
Min, J.H.1
Pavletich, N.P.2
-
38
-
-
34250795081
-
The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[ a ]pyrenyl-DNA lesions
-
Mocquet, V., Kropachev, K., Kolbanovskiy, M., Kolbanovskiy, A., Tapias, A., Cai, Y., Broyde, S., Geacintov, N.E., and Egly, J.M. (2007) The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[ a ]pyrenyl-DNA lesions. EMBO J., 26, 2923-2932.
-
(2007)
EMBO J.
, vol.26
, pp. 2923-2932
-
-
Mocquet, V.1
Kropachev, K.2
Kolbanovskiy, M.3
Kolbanovskiy, A.4
Tapias, A.5
Cai, Y.6
Broyde, S.7
Geacintov, N.E.8
Egly, J.M.9
-
39
-
-
0037027367
-
Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery
-
Geacintov, N.E., Broyde, S., Buterin, T., Naegeli, H., Wu, M., Yan, S., and Patel, D.J. (2002) Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery. Biopolymers, 65, 202-210.
-
(2002)
Biopolymers
, vol.65
, pp. 202-210
-
-
Geacintov, N.E.1
Broyde, S.2
Buterin, T.3
Naegeli, H.4
Wu, M.5
Yan, S.6
Patel, D.J.7
-
40
-
-
85133747116
-
Structural aspects of polycyclic aromatic carcinogen-damaged DNA and its recognition by NER proteins
-
in DNA Damage and Recognition (W. Siede, Y.W. Kow, and P.W. Doetsch), Taylor & Francis, London
-
Geacintov, N.E., Naegeli, H., Patel, D.J., and Broyde, S. (2006) Structural aspects of polycyclic aromatic carcinogen-damaged DNA and its recognition by NER proteins, in DNA Damage and Recognition (W. Siede, Y.W. Kow, and P.W. Doetsch), Taylor & Francis, London, pp. 263-296.
-
(2006)
, pp. 263-296
-
-
Geacintov, N.E.1
Naegeli, H.2
Patel, D.J.3
Broyde, S.4
-
41
-
-
0036682090
-
Relating repair susceptibility of carcinogen-damaged DNA with structural distortion and thermodynamic stability
-
Wu, M., Yan, S., Patel, D.J., Geacintov, N.E., and Broyde, S. (2002) Relating repair susceptibility of carcinogen-damaged DNA with structural distortion and thermodynamic stability. Nucleic Acids Res., 30, 3422-3432.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3422-3432
-
-
Wu, M.1
Yan, S.2
Patel, D.J.3
Geacintov, N.E.4
Broyde, S.5
-
42
-
-
0034822656
-
Stereochemical, structural, and thermodynamic origins of stability differences between stereoisomeric benzo[ a ]pyrene diol epoxide deoxyadenosine adducts in a DNA mutational hot spot sequence
-
Yan, S., Shapiro, R., Geacintov, N.E., and Broyde, S. (2001) Stereochemical, structural, and thermodynamic origins of stability differences between stereoisomeric benzo[ a ]pyrene diol epoxide deoxyadenosine adducts in a DNA mutational hot spot sequence. J. Am. Chem. Soc., 123, 7054-7066.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 7054-7066
-
-
Yan, S.1
Shapiro, R.2
Geacintov, N.E.3
Broyde, S.4
-
43
-
-
0037418535
-
Role of base sequence context in conformational equilibria and nucleotide excision repair of benzo[ a ] pyrene diol epoxide-adenine adducts
-
Yan, S., Wu, M., Buterin, T., Naegeli, H., Geacintov, N.E., and Broyde, S. (2003) Role of base sequence context in conformational equilibria and nucleotide excision repair of benzo[ a ] pyrene diol epoxide-adenine adducts. Biochemistry, 42, 2339-2354.
-
(2003)
Biochemistry
, vol.42
, pp. 2339-2354
-
-
Yan, S.1
Wu, M.2
Buterin, T.3
Naegeli, H.4
Geacintov, N.E.5
Broyde, S.6
-
44
-
-
0028931709
-
B-DNA twisting correlates with base-pair morphology
-
Gorin, A.A., Zhurkin, V.B., and Olson, W.K. (1995) B-DNA twisting correlates with base-pair morphology. J. Mol. Biol., 247, 34-48.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 34-48
-
-
Gorin, A.A.1
Zhurkin, V.B.2
Olson, W.K.3
-
45
-
-
0032530555
-
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
-
Olson, W.K., Gorin, A.A., Lu, X.J., Hock, L.M., and Zhurkin, V.B. (1998) DNA sequence-dependent deformability deduced from protein-DNA crystal complexes. P roc. Natl. Acad. Sci. USA, 95, 11163-11168.
-
(1998)
P roc. Natl. Acad. Sci. USA
, vol.95
, pp. 11163-11168
-
-
Olson, W.K.1
Gorin, A.A.2
Lu, X.J.3
Hock, L.M.4
Zhurkin, V.B.5
-
46
-
-
0024599312
-
Defi nitions and nomenclature of nucleic acid structure components
-
Dickerson, R.E. (1989) Defi nitions and nomenclature of nucleic acid structure components. Nucleic Acids Res., 17, 1797-1803.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 1797-1803
-
-
Dickerson, R.E.1
-
47
-
-
57749188239
-
Differential nucleotide excision repair susceptibility of bulky DNA adducts in different sequence contexts: hierarchies of recognition signals
-
Cai, Y., Patel, D.J., Geacintov, N.E., and Broyde, S. (2009) Differential nucleotide excision repair susceptibility of bulky DNA adducts in different sequence contexts: hierarchies of recognition signals. J. Mol. Biol., 385, 30-44.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 30-44
-
-
Cai, Y.1
Patel, D.J.2
Geacintov, N.E.3
Broyde, S.4
-
48
-
-
0036085639
-
Cancer risk assessment, indicators, and guidelines for polycyclic aromatic hydrocarbons in the ambient air
-
Bostrom, C.E., Gerde, P., Hanberg, A., Jernstrom, B., Johansson, C., Kyrklund, T., Rannug, A., Tornqvist, M., Victorin, K., and Westerholm, R. (2002) Cancer risk assessment, indicators, and guidelines for polycyclic aromatic hydrocarbons in the ambient air. Environ. H ealth Perspect., 110 (Suppl. 3), 451-488.
-
(2002)
Environ. H ealth Perspect.
, vol.110
, Issue.3 SUPPL.
, pp. 451-488
-
-
Bostrom, C.E.1
Gerde, P.2
Hanberg, A.3
Jernstrom, B.4
Johansson, C.5
Kyrklund, T.6
Rannug, A.7
Tornqvist, M.8
Victorin, K.9
Westerholm, R.10
-
49
-
-
84967592890
-
The Carcinogenic Effects of Polycyclic Aromatic Hydrocarbons
-
Imperial College Press, London
-
Luch, A. (ed.) (2005) The Carcinogenic Effects of Polycyclic Aromatic Hydrocarbons, Imperial College Press, London.
-
(2005)
-
-
Luch, A.1
-
50
-
-
0020431144
-
Induction of microsomal enzymes by foreign chemicals and carcinogenesis by polycyclic aromatic hydrocarbons: G
-
Conney, A.H. (1982) Induction of microsomal enzymes by foreign chemicals and carcinogenesis by polycyclic aromatic hydrocarbons: G. H. A. Clowes Memorial Lecture. Cancer Res., 42, 4875-4917.
-
(1982)
H. A. Clowes Memorial Lecture. Cancer Res.
, vol.42
, pp. 4875-4917
-
-
Conney, A.H.1
-
51
-
-
43449095391
-
The infl uence of diesel exhaust on polycyclic aromatic hydrocarbon-induced DNA damage, gene expression, and tumor initiation in Sencar mice in vivo
-
Courter, L.A., Luch, A., Musafia-jeknic, T., Arlt, V.M., Fischer, K., Bildfell, R., Pereira, C., Phillips, D.H., Poirier, M.C., and Baird, W.M. (2008) The infl uence of diesel exhaust on polycyclic aromatic hydrocarbon-induced DNA damage, gene expression, and tumor initiation in Sencar mice in vivo. Cancer Lett., 265, 135-147.
-
(2008)
Cancer Lett.
, vol.265
, pp. 135-147
-
-
Courter, L.A.1
Luch, A.2
Musafia-jeknic, T.3
Arlt, V.M.4
Fischer, K.5
Bildfell, R.6
Pereira, C.7
Phillips, D.H.8
Poirier, M.C.9
Baird, W.M.10
-
52
-
-
13444273224
-
Nature and nurture-lessons from chemical carcinogenesis
-
Luch, A. (2005) Nature and nurture-lessons from chemical carcinogenesis. N at. Rev. Cancer, 5, 113-125.
-
(2005)
N at. Rev. Cancer
, vol.5
, pp. 113-125
-
-
Luch, A.1
-
53
-
-
0031041812
-
NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity
-
Geacintov, N.E., Cosman, M., Hingerty, B.E., Amin, S., Broyde, S., and Patel, D.J. (1997) NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity. Chem. Res. Toxicol., 10, 111-146.
-
(1997)
Chem. Res. Toxicol.
, vol.10
, pp. 111-146
-
-
Geacintov, N.E.1
Cosman, M.2
Hingerty, B.E.3
Amin, S.4
Broyde, S.5
Patel, D.J.6
-
54
-
-
0033537638
-
Stereochemical origin of opposite orientations in DNA adducts derived from enantiomeric anti-benzo[ a ] pyrene diol epoxides with different tumorigenic potentials
-
Xie, X.M., Geacintov, N.E., and Broyde, S. (1999) Stereochemical origin of opposite orientations in DNA adducts derived from enantiomeric anti-benzo[ a ] pyrene diol epoxides with different tumorigenic potentials. Biochemistry, 38, 2956-2968.
-
(1999)
Biochemistry
, vol.38
, pp. 2956-2968
-
-
Xie, X.M.1
Geacintov, N.E.2
Broyde, S.3
-
55
-
-
0031910204
-
DNA adduct formation by polycyclic aromatic hydrocarbon dihydrodiol epoxides
-
Szeliga, J. and Dipple, A. (1998) DNA adduct formation by polycyclic aromatic hydrocarbon dihydrodiol epoxides. Chem. Res. Toxicol., 11, 1-11.
-
(1998)
Chem. Res. Toxicol.
, vol.11
, pp. 1-11
-
-
Szeliga, J.1
Dipple, A.2
-
56
-
-
0020523616
-
Fifty years of benzo[ a ]pyrene
-
Phillips, D.H. (1983) Fifty years of benzo[ a ]pyrene. Nature, 303, 468-472.
-
(1983)
Nature
, vol.303
, pp. 468-472
-
-
Phillips, D.H.1
-
57
-
-
0031831776
-
Mechanistic relationships between DNA adducts, oncogene mutations, and lung tumorigenesis in strain A mice
-
Nesnow, S., Ross, J.A., Mass, M.J., and Stoner, G.D. (1998) Mechanistic relationships between DNA adducts, oncogene mutations, and lung tumorigenesis in strain A mice. Exp. Lung Res., 24, 395-405.
-
(1998)
Exp. Lung Res.
, vol.24
, pp. 395-405
-
-
Nesnow, S.1
Ross, J.A.2
Mass, M.J.3
Stoner, G.D.4
-
58
-
-
0028967218
-
Adenomas induced by polycyclic aromatic hydrocarbons in strain A/J mouse lung correlate with time-integrated DNA adduct levels
-
Ross, J.A., Nelson, G.B., Wilson, K.H., Rabinowitz, J.R., Galati, A., Stoner, G.D., Nesnow, S., and Mass, M.J. (1995) Adenomas induced by polycyclic aromatic hydrocarbons in strain A/J mouse lung correlate with time-integrated DNA adduct levels. Cancer Res., 55, 1039-1044.
-
(1995)
Cancer Res.
, vol.55
, pp. 1039-1044
-
-
Ross, J.A.1
Nelson, G.B.2
Wilson, K.H.3
Rabinowitz, J.R.4
Galati, A.5
Stoner, G.D.6
Nesnow, S.7
Mass, M.J.8
-
59
-
-
0033535436
-
Polycyclic aromatic hydrocarbons: correlations between DNA adducts and ras oncogene mutations
-
Ross, J.A. and Nesnow, S. (1999) Polycyclic aromatic hydrocarbons: correlations between DNA adducts and ras oncogene mutations. Mutat. Res., 424, 155-166.
-
(1999)
Mutat. Res.
, vol.424
, pp. 155-166
-
-
Ross, J.A.1
Nesnow, S.2
-
60
-
-
0028887082
-
Tumorigenicity in newborn mice of fjord region and other sterically hindered diol epoxides of benzo[ g ]chrysene, dibenzo[ a, l ]pyrene (dibenzo[ def, p ] chrysene), 4H-cyclopenta[ def ]chrysene and fl uoranthene
-
Amin, S., Desai, D., Dai, W., Harvey, R.G., and Hecht, S.S. (1995) Tumorigenicity in newborn mice of fjord region and other sterically hindered diol epoxides of benzo[ g ]chrysene, dibenzo[ a, l ]pyrene (dibenzo[ def, p ] chrysene), 4H-cyclopenta[ def ]chrysene and fl uoranthene. Carcinogenesis, 16, 2813-2817.
-
(1995)
Carcinogenesis
, vol.16
, pp. 2813-2817
-
-
Amin, S.1
Desai, D.2
Dai, W.3
Harvey, R.G.4
Hecht, S.S.5
-
61
-
-
0029142955
-
Mammary carcinogenicity in female CD rats of fjord region diol epoxides of benzo[ c ] phenanthrene, benzo[ g ]chrysene and dibenzo[ a, l ]pyrene
-
Amin, S., Krzeminski, J., Rivenson, A., Kurtzke, C., Hecht, S.S., and El-Bayoumy, K. (1995) Mammary carcinogenicity in female CD rats of fjord region diol epoxides of benzo[ c ] phenanthrene, benzo[ g ]chrysene and dibenzo[ a, l ]pyrene. Carcinogenesis, 16, 1971-1974.
-
(1995)
Carcinogenesis
, vol.16
, pp. 1971-1974
-
-
Amin, S.1
Krzeminski, J.2
Rivenson, A.3
Kurtzke, C.4
Hecht, S.S.5
El-bayoumy, K.6
-
62
-
-
0028104989
-
Contrasting incidence of ras mutations in rat mammary and mouse skin tumors induced by anti-benzo[ c ]phenanthrene-3,4-diol-1,2-epoxide
-
Ronai, Z.A., Gradia, S., el-Bayoumy, K., Amin, S., and Hecht, S.S. (1994) Contrasting incidence of ras mutations in rat mammary and mouse skin tumors induced by anti-benzo[ c ]phenanthrene-3,4-diol-1,2-epoxide. Carcinogenesis, 15, 2113-2116.
-
(1994)
Carcinogenesis
, vol.15
, pp. 2113-2116
-
-
Ronai, Z.A.1
Gradia, S.2
El-bayoumy, K.3
Amin, S.4
Hecht, S.S.5
-
63
-
-
0027955178
-
Potent mammary carcinogenicity in female CD rats of a fjord region diol-epoxide of benzo[ c ]phenanthrene compared to a bay region diol-epoxide of benzo[ a ] pyrene
-
Hecht, S.S., el-Bayoumy, K., Rivenson, A., and Amin, S. (1994) Potent mammary carcinogenicity in female CD rats of a fjord region diol-epoxide of benzo[ c ]phenanthrene compared to a bay region diol-epoxide of benzo[ a ] pyrene. Cancer Res., 54, 21-24.
-
(1994)
Cancer Res.
, vol.54
, pp. 21-24
-
-
Hecht, S.S.1
El-bayoumy, K.2
Rivenson, A.3
Amin, S.4
-
64
-
-
0026002897
-
Comparative dose-response tumorigenicity studies of dibenzo[ a, l ]pyrene versus 7,12-dimethylbenz[ a ]anthracene, benzo[ a ]pyrene and two dibenzo[ a, l ] pyrene dihydrodiols in mouse skin and rat mammary gland
-
Cavalieri, E.L., Higginbotham, S., Rama Krishna, N.V., Devanesan, P.D., Todorovic, R., Rogan, E.G., and Salmasi, S. (1991) Comparative dose-response tumorigenicity studies of dibenzo[ a, l ]pyrene versus 7,12-dimethylbenz[ a ]anthracene, benzo[ a ]pyrene and two dibenzo[ a, l ] pyrene dihydrodiols in mouse skin and rat mammary gland. Carcinogenesis, 12, 1939-1944.
-
(1991)
Carcinogenesis
, vol.12
, pp. 1939-1944
-
-
Cavalieri, E.L.1
Higginbotham, S.2
Rama Krishna, N.V.3
Devanesan, P.D.4
Todorovic, R.5
Rogan, E.G.6
Salmasi, S.7
-
65
-
-
84967546681
-
Metabolic activation and detoxifi cation of polycyclic aromatic hydrocarbons
-
in The Carcinogenic Effects of Polycyclic Aromatic Hydrocarbons (ed. A. Luch), Imperial College Press, London
-
Luch, A. and Baird, W.M. (2005) Metabolic activation and detoxifi cation of polycyclic aromatic hydrocarbons, in The Carcinogenic Effects of Polycyclic Aromatic Hydrocarbons (ed. A. Luch), Imperial College Press, London, pp. 19-96.
-
(2005)
, pp. 19-96
-
-
Luch, A.1
Baird, W.M.2
-
66
-
-
0024442239
-
DNA adducts from carcinogenic and noncarcinogenic enantiomers of benzo[ a ]pyrene dihydrodiol epoxide
-
Cheng, S.C., Hilton, B.D., Roman, J.M., and Dipple, A. (1989) DNA adducts from carcinogenic and noncarcinogenic enantiomers of benzo[ a ]pyrene dihydrodiol epoxide. Chem. Res. Toxicol., 2, 334-340.
-
(1989)
Chem. Res. Toxicol.
, vol.2
, pp. 334-340
-
-
Cheng, S.C.1
Hilton, B.D.2
Roman, J.M.3
Dipple, A.4
-
67
-
-
0018137343
-
Binding of benzo[ a ]pyrene 7,8-diol-9,10-epoxides to DNA, RNA, and protein of mouse skin occurs with high stereoselectivity
-
Koreeda, M., Moore, P.D., Wislocki, P.G., Levin, W., Yagi, H., and Jerina, D.M. (1978) Binding of benzo[ a ]pyrene 7,8-diol-9,10-epoxides to DNA, RNA, and protein of mouse skin occurs with high stereoselectivity. Science, 199, 778-781.
-
(1978)
Science
, vol.199
, pp. 778-781
-
-
Koreeda, M.1
Moore, P.D.2
Wislocki, P.G.3
Levin, W.4
Yagi, H.5
Jerina, D.M.6
-
68
-
-
84888688288
-
Benzo[a]pyrene diol epoxides as intermediates in nucleic acid binding in vitro and in vivo
-
Weinstein, I.B., Jeffrey, A.M., Jennette, K.W., Blobstein, S.H., Harvey, R.G., Harris, C., Autrup, H., Kasai, H., and Nakanishi, K. (1976) Benzo[ a ]pyrene diol epoxides as intermediates in nucleic acid binding in vitro and in vivo. Carcinogenesis, 5, 1421-1430.
-
(1976)
Carcinogenesis
, vol.5
, pp. 1421-1430
-
-
Weinstein, I.B.1
Jeffrey, A.M.2
Jennette, K.W.3
Blobstein, S.H.4
Harvey, R.G.5
Harris, C.6
Autrup, H.7
Kasai, H.8
Nakanishi, K.9
-
69
-
-
0031687879
-
Dibenzo[a, l]pyrene (dibenzo[def, p]chrysene): fjord-region distortions
-
Katz, A.K., Carrell, H.L., and Glusker, J.P. (1998) Dibenzo[ a, l ]pyrene (dibenzo[ def, p ]chrysene): fjord-region distortions. Carcinogenesis, 19, 1641-1648.
-
(1998)
Carcinogenesis
, vol.19
, pp. 1641-1648
-
-
Katz, A.K.1
Carrell, H.L.2
Glusker, J.P.3
-
70
-
-
0023236470
-
Optically active benzo[ c ] phenanthrene diol epoxides bind extensively to adenine in DNA
-
Dipple, A., Pigott, M.A., Agarwal, S.K., Yagi, H., Sayer, J.M., and Jerina, D.M. (1987) Optically active benzo[ c ] phenanthrene diol epoxides bind extensively to adenine in DNA. Nature, 327, 535-536.
-
(1987)
Nature
, vol.327
, pp. 535-536
-
-
Dipple, A.1
Pigott, M.A.2
Agarwal, S.K.3
Yagi, H.4
Sayer, J.M.5
Jerina, D.M.6
-
71
-
-
0029608787
-
Stereoselective activation of dibenzo[a, l]pyrene to (-)-anti (11 R,12 S,13 S,14 R)-and (+)-syn (11 S,12 R,13 S,14 R)-11,12-diol-13,14-epoxides which bind extensively to deoxyadenosine residues of DNA in the human mammary carcinoma cell line MCF-7
-
Ralston, S.L., Seidel, A., Luch, A., Platt, K.L., and Baird, W.M. (1995) Stereoselective activation of dibenzo[ a, l ]pyrene to (-)-anti (11 R,12 S,13 S,14 R)-and (+)-syn (11 S,12 R,13 S,14 R)-11,12-diol-13,14-epoxides which bind extensively to deoxyadenosine residues of DNA in the human mammary carcinoma cell line MCF-7. Carcinogenesis, 16, 2899-2907.
-
(1995)
Carcinogenesis
, vol.16
, pp. 2899-2907
-
-
Ralston, S.L.1
Seidel, A.2
Luch, A.3
Platt, K.L.4
Baird, W.M.5
-
72
-
-
0031831862
-
Structure, conformations, and repair of DNA adducts from dibenzo[ a, l ]pyrene: 32 P-postlabeling and fl uorescence studies
-
Jankowiak, R., Ariese, F., Hewer, A., Luch, A., Zamzow, D., Hughes, N.C., Phillips, D., Seidel, A., Platt, K.L., Oesch, F., et al. (1998) Structure, conformations, and repair of DNA adducts from dibenzo[ a, l ]pyrene: 32 P-postlabeling and fl uorescence studies. Chem. Res. Toxicol, 11, 674-685.
-
(1998)
Chem. Res. Toxicol
, vol.11
, pp. 674-685
-
-
Jankowiak, R.1
Ariese, F.2
Hewer, A.3
Luch, A.4
Zamzow, D.5
Hughes, N.C.6
Phillips, D.7
Seidel, A.8
Platt, K.L.9
Oesch, F.10
-
73
-
-
0031416521
-
Comparison of the morphological transforming activities of dibenzo[ a, l ]pyrene and benzo[ a ]pyrene in C3H10T1/2CL8 cells and characterization of the dibenzo[ a, l ]pyrene-DNA adducts
-
Nesnow, S., Davis, C., Nelson, G., Ross, J.A., Allison, J., Adams, L., and King, L.C. (1997) Comparison of the morphological transforming activities of dibenzo[ a, l ]pyrene and benzo[ a ]pyrene in C3H10T1/2CL8 cells and characterization of the dibenzo[ a, l ]pyrene-DNA adducts. Carcinogenesis, 18, 1973-1978.
-
(1997)
Carcinogenesis
, vol.18
, pp. 1973-1978
-
-
Nesnow, S.1
Davis, C.2
Nelson, G.3
Ross, J.A.4
Allison, J.5
Adams, L.6
King, L.C.7
-
74
-
-
0032911496
-
Tumor-initiating activity of the (+)-(S, S)-and (-)-(R, R)-enantiomers of trans-11,12-dihydroxy-11,12-dihydrodibenzo[ a, l ]pyrene in mouse skin
-
Luch, A., Friesel, H., Seidel, A., and Platt, K.L. (1999) Tumor-initiating activity of the (+)-(S, S)-and (-)-(R, R)-enantiomers of trans-11,12-dihydroxy-11,12-dihydrodibenzo[ a, l ]pyrene in mouse skin. Cancer Lett., 136, 119-128.
-
(1999)
Cancer Lett.
, vol.136
, pp. 119-128
-
-
Luch, A.1
Friesel, H.2
Seidel, A.3
Platt, K.L.4
-
75
-
-
63249099610
-
On the impact of the molecule structure in chemical carcinogenesis
-
Luch, A. (2009) On the impact of the molecule structure in chemical carcinogenesis. EXS, 99, 151-179.
-
(2009)
EXS
, vol.99
, pp. 151-179
-
-
Luch, A.1
-
76
-
-
0037223697
-
Mutations induced by (-)-anti-11 R,12 S-dihydrodiol 13 S,14 R-epoxide of dibenzo[ a, l ]pyrene in the coding region of the hypoxanthine phosphoribosyltransferase (Hprt) gene in Chinese hamster V79 cells
-
Mahadevan, B., Dashwood, W.M., Luch, A., Pecaj, A., Doehmer, J., Seidel, A., Pereira, C., and Baird, W.M. (2003) Mutations induced by (-)-anti-11 R,12 S-dihydrodiol 13 S,14 R-epoxide of dibenzo[ a, l ]pyrene in the coding region of the hypoxanthine phosphoribosyltransferase (Hprt) gene in Chinese hamster V79 cells. Environ. Mol. Mutagen., 41, 131-139.
-
(2003)
Environ. Mol. Mutagen.
, vol.41
, pp. 131-139
-
-
Mahadevan, B.1
Dashwood, W.M.2
Luch, A.3
Pecaj, A.4
Doehmer, J.5
Seidel, A.6
Pereira, C.7
Baird, W.M.8
-
77
-
-
5644278860
-
DNA damage, repair, and mutation induction by (+)-syn and (-)-anti-dibenzo[ a, l ]pyrene-11,12-diol-13,14-epoxides in mouse cells
-
Yoon, J.H., Besaratinia, A., Feng, Z., Tang, M.S., Amin, S., Luch, A., and Pfeifer, G.P. (2004) DNA damage, repair, and mutation induction by (+)-syn and (-)-anti-dibenzo[ a, l ]pyrene-11,12-diol-13,14-epoxides in mouse cells. Cancer Res., 64, 7321-7328.
-
(2004)
Cancer Res.
, vol.64
, pp. 7321-7328
-
-
Yoon, J.H.1
Besaratinia, A.2
Feng, Z.3
Tang, M.S.4
Amin, S.5
Luch, A.6
Pfeifer, G.P.7
-
78
-
-
60849122212
-
The sequence dependence of human nucleotide excision repair effi ciencies of benzo[ a ] pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions
-
Kropachev, K., Kolbanovskii, M., Cai, Y., Rodriguez, F., Kolbanovskii, A., Liu, Y., Zhang, L., Amin, S., Patel, D., Broyde, S., et al. (2009) The sequence dependence of human nucleotide excision repair effi ciencies of benzo[ a ] pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions. J. Mol. Biol., 386, 1193-1203.
-
(2009)
J. Mol. Biol.
, vol.386
, pp. 1193-1203
-
-
Kropachev, K.1
Kolbanovskii, M.2
Cai, Y.3
Rodriguez, F.4
Kolbanovskii, A.5
Liu, Y.6
Zhang, L.7
Amin, S.8
Patel, D.9
Broyde, S.10
-
79
-
-
34247213435
-
Exocyclic amino groups of fl anking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[ a ]pyrenyl-guanine lesions in a GG mutation hotspot context
-
Rodríguez, F.A., Cai, Y., Lin, C., Tang, Y., Kolbanovskiy, A., Amin, S., Patel, D.J., Broyde, S., and Geacintov, N.E. (2007) Exocyclic amino groups of fl anking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[ a ]pyrenyl-guanine lesions in a GG mutation hotspot context. Nucleic Acids Res., 35, 1555-1568.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1555-1568
-
-
Rodríguez, F.A.1
Cai, Y.2
Lin, C.3
Tang, Y.4
Kolbanovskiy, A.5
Amin, S.6
Patel, D.J.7
Broyde, S.8
Geacintov, N.E.9
-
80
-
-
0036174219
-
Synthesis and characterization of site-specifi c and stereoisomeric fjord dibenzo[ a, l ]pyrene diol epoxide-N 6)-adenine adducts: unusual thermal stabilization of modifi ed DNA duplexes
-
Ruan, Q., Kolbanovskiy, A., Zhuang, P., Chen, J., Krzeminski, J., Amin, S., and Geacintov, N.E. (2002) Synthesis and characterization of site-specifi c and stereoisomeric fjord dibenzo[ a, l ]pyrene diol epoxide-N 6)-adenine adducts: unusual thermal stabilization of modifi ed DNA duplexes. Chem. Res. Toxicol., 15, 249-261.
-
(2002)
Chem. Res. Toxicol.
, vol.15
, pp. 249-261
-
-
Ruan, Q.1
Kolbanovskiy, A.2
Zhuang, P.3
Chen, J.4
Krzeminski, J.5
Amin, S.6
Geacintov, N.E.7
-
81
-
-
0030031220
-
Base sequence-dependent bends in site-specifi c benzo[ a ]pyrene diol epoxide-modifi ed oligonucleotide duplexes
-
Liu, T., Xu, J., Tsao, H., Li, B., Xu, R., Yang, C., Amin, S., Moriya, M., and Geacintov, N.E. (1996) Base sequence-dependent bends in site-specifi c benzo[ a ]pyrene diol epoxide-modifi ed oligonucleotide duplexes. Chem. Res. Toxicol., 9, 255-261.
-
(1996)
Chem. Res. Toxicol.
, vol.9
, pp. 255-261
-
-
Liu, T.1
Xu, J.2
Tsao, H.3
Li, B.4
Xu, R.5
Yang, C.6
Amin, S.7
Moriya, M.8
Geacintov, N.E.9
-
82
-
-
0032492642
-
Sequence dependence and characteristics of bends induced by site-specifi c polynuclear aromatic carcinogen-deoxyguanosine lesions in oligonucleotides
-
Tsao, H., Mao, B., Zhuang, P., Xu, R., Amin, S., and Geacintov, N.E. (1998) Sequence dependence and characteristics of bends induced by site-specifi c polynuclear aromatic carcinogen-deoxyguanosine lesions in oligonucleotides. Biochemistry, 37, 4993-5000.
-
(1998)
Biochemistry
, vol.37
, pp. 4993-5000
-
-
Tsao, H.1
Mao, B.2
Zhuang, P.3
Xu, R.4
Amin, S.5
Geacintov, N.E.6
-
83
-
-
0027215240
-
Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: intercalation of the covalently attached benzo[ a ] pyrenyl ring into the helix and displacement of the modifi ed deoxyguanosine
-
Cosman, M., de los Santos, C., Fiala, R., Hingerty, B.E., Ibanez, V., Luna, E., Harvey, R., Geacintov, N.E., Broyde, S., and Patel, D.J. (1993) Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: intercalation of the covalently attached benzo[ a ] pyrenyl ring into the helix and displacement of the modifi ed deoxyguanosine. Biochemistry, 32, 4145-4155.
-
(1993)
Biochemistry
, vol.32
, pp. 4145-4155
-
-
Cosman, M.1
De Los, S.C.2
Fiala, R.3
Hingerty, B.E.4
Ibanez, V.5
Luna, E.6
Harvey, R.7
Geacintov, N.E.8
Broyde, S.9
Patel, D.J.10
-
84
-
-
0026527186
-
Solution conformation of the major adduct between the carcinogen (+)-anti-benzo[ a ]pyrene diol epoxide and DNA
-
Cosman, M., de los Santos, C., Fiala, R., Hingerty, B.E., Singh, S.B., Ibanez, V., Margulis, L.A., Live, D., Geacintov, N.E., Broyde, S., et al. (1992) Solution conformation of the major adduct between the carcinogen (+)-anti-benzo[ a ]pyrene diol epoxide and DNA. Proc. Natl. Acad. Sci. USA, 89, 1914-1918.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 1914-1918
-
-
Cosman, M.1
De Los, S.C.2
Fiala, R.3
Hingerty, B.E.4
Singh, S.B.5
Ibanez, V.6
Margulis, L.A.7
Live, D.8
Geacintov, N.E.9
Broyde, S.10
-
85
-
-
0027525482
-
Solution conformation of the (+)-trans-anti-[BPh]dA adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[ c ]phenanthrene to the 5 ′-side of the adduct site without disruption of the modifi ed base pair
-
Cosman, M., Fiala, R., Hingerty, B.E., Laryea, A., Lee, H., Harvey, R.G., Amin, S., Geacintov, N.E., Broyde, S., and Patel, D. (1993) Solution conformation of the (+)-trans-anti-[BPh]dA adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[ c ]phenanthrene to the 5 ′-side of the adduct site without disruption of the modifi ed base pair. Biochemistry, 32, 12488-12497.
-
(1993)
Biochemistry
, vol.32
, pp. 12488-12497
-
-
Cosman, M.1
Fiala, R.2
Hingerty, B.E.3
Laryea, A.4
Lee, H.5
Harvey, R.G.6
Amin, S.7
Geacintov, N.E.8
Broyde, S.9
Patel, D.10
-
86
-
-
0028988423
-
Solution conformation of the (-)-trans-anti-benzo[ c ]phenanthrene-dA ([BPh]dA) adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[ c ]phenanthrenyl ring to the 3 ′-side of the adduct site and comparison with the (+)-trans-anti-[BPh]dA opposite dT stereoisomer
-
Cosman, M., Laryea, A., Fiala, R., Hingerty, B.E., Amin, S., Geacintov, N.E., Broyde, S., and Patel, D.J. (1995) Solution conformation of the (-)-trans-anti-benzo[ c ]phenanthrene-dA ([BPh]dA) adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[ c ]phenanthrenyl ring to the 3 ′-side of the adduct site and comparison with the (+)-trans-anti-[BPh]dA opposite dT stereoisomer. Biochemistry, 34, 1295-1307.
-
(1995)
Biochemistry
, vol.34
, pp. 1295-1307
-
-
Cosman, M.1
Laryea, A.2
Fiala, R.3
Hingerty, B.E.4
Amin, S.5
Geacintov, N.E.6
Broyde, S.7
Patel, D.J.8
-
87
-
-
0026734924
-
Infl uence of benzo[ a ] pyrene diol epoxide chirality on solution conformations of DNA covalent adducts: the (-)-trans-anti-[BP]G · C adduct structure and comparison with the (+)-trans-anti-[BP]G · C enantiomer
-
de los Santos, C., Cosman, M., Hingerty, B.E., Ibanez, V., Margulis, L.A., Geacintov, N.E., Broyde, S., and Patel, D.J. (1992) Infl uence of benzo[ a ] pyrene diol epoxide chirality on solution conformations of DNA covalent adducts: the (-)-trans-anti-[BP]G · C adduct structure and comparison with the (+)-trans-anti-[BP]G · C enantiomer. Biochemistry, 31, 5245-5252.
-
(1992)
Biochemistry
, vol.31
, pp. 5245-5252
-
-
De Los, S.C.1
Cosman, M.2
Hingerty, B.E.3
Ibanez, V.4
Margulis, L.A.5
Geacintov, N.E.6
Broyde, S.7
Patel, D.J.8
-
88
-
-
0035830956
-
Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity
-
Lin, C.H., Huang, X., Kolbanovskii, A., Hingerty, B.E., Amin, S., Broyde, S., Geacintov, N.E., and Patel, D.J. (2001) Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity. J. Mol. Biol., 306, 1059-1080.
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 1059-1080
-
-
Lin, C.H.1
Huang, X.2
Kolbanovskii, A.3
Hingerty, B.E.4
Amin, S.5
Broyde, S.6
Geacintov, N.E.7
Patel, D.J.8
-
89
-
-
0033578861
-
Solution conformation of the (+)-trans-anti-benzo[ g ]chrysene-dA adduct opposite dT in a DNA duplex
-
Suri, A.K., Mao, B., Amin, S., Geacintov, N.E., and Patel, D.J. (1999) Solution conformation of the (+)-trans-anti-benzo[ g ]chrysene-dA adduct opposite dT in a DNA duplex. J. Mol. Biol., 292, 289-307.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 289-307
-
-
Suri, A.K.1
Mao, B.2
Amin, S.3
Geacintov, N.E.4
Patel, D.J.5
-
90
-
-
34247186195
-
AMBER 9
-
University of California, San Francisco, CA
-
Case, D.A., Darden, T.A., Cheatham, I.T.E., Simmerling, C.L., Wang, J., Duke, R.E., Luo, R., Crowley, M., Walker, R., Zhang, W., et al. (2008) AMBER 9, University of California, San Francisco, CA.
-
(2008)
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, I.T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Crowley, M.8
Walker, R.9
Zhang, W.10
-
91
-
-
0034521981
-
Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models
-
Kollman, P.A., Massova, I., Reyes, C., Kuhn, B., Huo, S., Chong, L., Lee, M., Lee, T., Duan, Y., Wang, W., et al. (2000) Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc. Chem. Res., 33, 889-897.
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
-
92
-
-
0033578345
-
Solution structure of the (+)-cis-anti-benzo[ a ]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex
-
Mao, B., Gu, Z., Gorin, A., Chen, J., Hingerty, B.E., Amin, S., Broyde, S., Geacintov, N.E., and Patel, D.J. (1999) Solution structure of the (+)-cis-anti-benzo[ a ]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex. Biochemistry, 38, 10831-10842.
-
(1999)
Biochemistry
, vol.38
, pp. 10831-10842
-
-
Mao, B.1
Gu, Z.2
Gorin, A.3
Chen, J.4
Hingerty, B.E.5
Amin, S.6
Broyde, S.7
Geacintov, N.E.8
Patel, D.J.9
-
93
-
-
33644626078
-
NMR structures of damaged DNA
-
Lukin, M. and de Los Santos, C. (2006) NMR structures of damaged DNA. Chem. Rev., 106, 607-686.
-
(2006)
Chem. Rev.
, vol.106
, pp. 607-686
-
-
Lukin, M.1
De Los, S.C.2
-
94
-
-
0028838461
-
NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N 6-amino group to (+)-(7 R,8 S,9 S,10 R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ] pyrene: an unusual syn glycosidic torsion angle at the modifi ed dA
-
Yeh, H.J., Sayer, J.M., Liu, X., Altieri, A.S., Byrd, R.A., Lakshman, M.K., Yagi, H., Schurter, E.J., Gorenstein, D.G., and Jerina, D.M. (1995) NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N 6-amino group to (+)-(7 R,8 S,9 S,10 R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ] pyrene: an unusual syn glycosidic torsion angle at the modifi ed dA. Biochemistry, 34, 13570-13581.
-
(1995)
Biochemistry
, vol.34
, pp. 13570-13581
-
-
Yeh, H.J.1
Sayer, J.M.2
Liu, X.3
Altieri, A.S.4
Byrd, R.A.5
Lakshman, M.K.6
Yagi, H.7
Schurter, E.J.8
Gorenstein, D.G.9
Jerina, D.M.10
-
95
-
-
0028943587
-
NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10 R adduct derived from trans addition of a deoxyadenosine N 6-amino group to (-)-(7 S,8 R,9 R,10 S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ]pyrene
-
Schurter, E.J., Yeh, H.J., Sayer, J.M., Lakshman, M.K., Yagi, H., Jerina, D.M., and Gorenstein, D.G. (1995) NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10 R adduct derived from trans addition of a deoxyadenosine N 6-amino group to (-)-(7 S,8 R,9 R,10 S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ]pyrene. Biochemistry, 34, 1364-1375.
-
(1995)
Biochemistry
, vol.34
, pp. 1364-1375
-
-
Schurter, E.J.1
Yeh, H.J.2
Sayer, J.M.3
Lakshman, M.K.4
Yagi, H.5
Jerina, D.M.6
Gorenstein, D.G.7
-
96
-
-
0029091659
-
Nuclear magnetic resonance solution structure of an undecanucleotide duplex with a complementary thymidine base opposite a 10 R adduct derived from trans addition of a deoxyadenosine N 6-amino group to (-)-(7 R,8 S,9 R,10 S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ]pyrene
-
Schurter, E.J., Sayer, J.M., Oh-hara, T., Yeh, H.J., Yagi, H., Luxon, B.A., Jerina, D.M., and Gorenstein, D.G. (1995) Nuclear magnetic resonance solution structure of an undecanucleotide duplex with a complementary thymidine base opposite a 10 R adduct derived from trans addition of a deoxyadenosine N 6-amino group to (-)-(7 R,8 S,9 R,10 S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ]pyrene. Biochemistry, 34, 9009-9020.
-
(1995)
Biochemistry
, vol.34
, pp. 9009-9020
-
-
Schurter, E.J.1
Sayer, J.M.2
Oh-hara, T.3
Yeh, H.J.4
Yagi, H.5
Luxon, B.A.6
Jerina, D.M.7
Gorenstein, D.G.8
-
97
-
-
0034700268
-
NMR evidence for syn-anti interconversion of a trans opened (10 R)-dA adduct of benzo[ a ]pyrene (7 S,8 R)-diol (9 R,10 S)-epoxide in a DNA duplex
-
Volk, D.E., Rice, J.S., Luxon, B.A., Yeh, H.J., Liang, C., Xie, G., Sayer, J.M., Jerina, D.M., and Gorenstein, D.G. (2000) NMR evidence for syn-anti interconversion of a trans opened (10 R)-dA adduct of benzo[ a ]pyrene (7 S,8 R)-diol (9 R,10 S)-epoxide in a DNA duplex. Biochemistry, 39, 14040-14053.
-
(2000)
Biochemistry
, vol.39
, pp. 14040-14053
-
-
Volk, D.E.1
Rice, J.S.2
Luxon, B.A.3
Yeh, H.J.4
Liang, C.5
Xie, G.6
Sayer, J.M.7
Jerina, D.M.8
Gorenstein, D.G.9
-
98
-
-
0029989672
-
Adduction of the human N-ras codon 61 sequence with (-)-(7 S,8 R,9 R,10 S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ] pyrene: structural refi nement of the intercalated SRSR (61,2) (-)-(7 S,8 R,9 S, 10 R)-N 6-[10-(7,8,9,10-tetrahydrobenzo[ a ] pyrenyl)]-2 ′-deoxyadenosyl adduct from1 H NMR
-
Zegar, I.S., Kim, S.J., Johansen, T.N., Horton, P.J., Harris, C.M., Harris, T.M., and Stone, M.P. (1996) Adduction of the human N-ras codon 61 sequence with (-)-(7 S,8 R,9 R,10 S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ] pyrene: structural refi nement of the intercalated SRSR (61,2) (-)-(7 S,8 R,9 S, 10 R)-N 6-[10-(7,8,9,10-tetrahydrobenzo[ a ] pyrenyl)]-2 ′-deoxyadenosyl adduct from1 H NMR. Biochemistry, 35, 6212-6224.
-
(1996)
Biochemistry
, vol.35
, pp. 6212-6224
-
-
Zegar, I.S.1
Kim, S.J.2
Johansen, T.N.3
Horton, P.J.4
Harris, C.M.5
Harris, T.M.6
Stone, M.P.7
-
99
-
-
0032817450
-
Origins of conformational differences between cis and trans DNA adducts derived from enantiomeric anti-benzo[ a ]pyrene diol epoxides
-
Xie, X.M., Geacintov, N.E., and Broyde, S. (1999) Origins of conformational differences between cis and trans DNA adducts derived from enantiomeric anti-benzo[ a ]pyrene diol epoxides. Chem. Res. Toxicol., 12, 597-609.
-
(1999)
Chem. Res. Toxicol.
, vol.12
, pp. 597-609
-
-
Xie, X.M.1
Geacintov, N.E.2
Broyde, S.3
-
100
-
-
0029952630
-
Major groove (S)-α-(N 6-adenyl)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequence: conformations of the S (61,2) and S (61,3) sequence isomers from 1 H NMR
-
Feng, B., Voehler, M., Zhou, L., Passarelli, M., Harris, C.M., Harris, T.M., and Stone, M.P. (1996) Major groove (S)-α-(N 6-adenyl)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequence: conformations of the S (61,2) and S (61,3) sequence isomers from 1 H NMR. Biochemistry, 35, 7316-7329.
-
(1996)
Biochemistry
, vol.35
, pp. 7316-7329
-
-
Feng, B.1
Voehler, M.2
Zhou, L.3
Passarelli, M.4
Harris, C.M.5
Harris, T.M.6
Stone, M.P.7
-
101
-
-
0026002638
-
Structures of the (+)-and (-)-trans-7,8-dihydroxy-anti-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ] pyrene adducts to guanine-N 2 in a duplex dodecamer
-
Singh, S.B., Hingerty, B.E., Singh, U.C., Greenberg, J.P., Geacintov, N.E., and Broyde, S. (1991) Structures of the (+)-and (-)-trans-7,8-dihydroxy-anti-9,10-epoxy-7,8,9,10-tetrahydrobenzo[ a ] pyrene adducts to guanine-N 2 in a duplex dodecamer. Cancer Res., 51, 3482-3492.
-
(1991)
Cancer Res.
, vol.51
, pp. 3482-3492
-
-
Singh, S.B.1
Hingerty, B.E.2
Singh, U.C.3
Greenberg, J.P.4
Geacintov, N.E.5
Broyde, S.6
-
102
-
-
0029764542
-
Solution conformation of the (-)-cis-anti-benzo[ a ] pyrenyl-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring into the helix with base displacement of the modifi ed deoxyguanosine into the major groove
-
Cosman, M., Hingerty, B.E., Luneva, N., Amin, S., Geacintov, N.E., Broyde, S., and Patel, D.J. (1996) Solution conformation of the (-)-cis-anti-benzo[ a ] pyrenyl-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring into the helix with base displacement of the modifi ed deoxyguanosine into the major groove. Biochemistry, 35, 9850-9863.
-
(1996)
Biochemistry
, vol.35
, pp. 9850-9863
-
-
Cosman, M.1
Hingerty, B.E.2
Luneva, N.3
Amin, S.4
Geacintov, N.E.5
Broyde, S.6
Patel, D.J.7
-
103
-
-
0030009945
-
Differential hydration thermodynamics of stereoisomeric DNA-benzo[ a ]pyrene adducts derived from diol epoxide enantiomers with different tumorigenic potentials
-
Marky, L.A., Rentzeperis, D., Luneva, N.P., Cosman, M., Geacintoy, N.E., and Kupke, D.W. (1996) Differential hydration thermodynamics of stereoisomeric DNA-benzo[ a ]pyrene adducts derived from diol epoxide enantiomers with different tumorigenic potentials. J. Am. Chem. Soc., 118, 3804-3810.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 3804-3810
-
-
Marky, L.A.1
Rentzeperis, D.2
Luneva, N.P.3
Cosman, M.4
Geacintoy, N.E.5
Kupke, D.W.6
-
104
-
-
0032499633
-
Effect of mismatched complementary strands and 5 ′-change in sequence context on the thermodynamics and structure of benzo[ a ]pyrene-modifi ed oligonucleotides
-
Arghavani, M.B., SantaLucia, J., Jr., and Romano, L.J. (1998) Effect of mismatched complementary strands and 5 ′-change in sequence context on the thermodynamics and structure of benzo[ a ]pyrene-modifi ed oligonucleotides. Biochemistry, 37, 8575-8583.
-
(1998)
Biochemistry
, vol.37
, pp. 8575-8583
-
-
Arghavani, M.B.1
SantaLucia Jr, J.2
Romano, L.J.3
-
105
-
-
0023406843
-
Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves
-
Marky, L.A. and Breslauer, K.J. (1987) Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves. Biopolymers, 26, 1601-1620.
-
(1987)
Biopolymers
, vol.26
, pp. 1601-1620
-
-
Marky, L.A.1
Breslauer, K.J.2
-
106
-
-
0032564393
-
Multiple conformations of an intercalated (-)-(7 S,8 R,9 S,10 R)-N 6-[10-(7,8,9,10-tetrahydrobenzo[ a ]pyrenyl)]-2 ′-deoxyadenosyl adduct in the N-ras codon 61 sequence
-
Zegar, I.S., Chary, P., Jabil, R.J., Tamura, P.J., Johansen, T.N., Lloyd, R.S., Harris, C.M., Harris, T.M., and Stone, M.P. (1998) Multiple conformations of an intercalated (-)-(7 S,8 R,9 S,10 R)-N 6-[10-(7,8,9,10-tetrahydrobenzo[ a ]pyrenyl)]-2 ′-deoxyadenosyl adduct in the N-ras codon 61 sequence. Biochemistry, 37, 16516-16528.
-
(1998)
Biochemistry
, vol.37
, pp. 16516-16528
-
-
Zegar, I.S.1
Chary, P.2
Jabil, R.J.3
Tamura, P.J.4
Johansen, T.N.5
Lloyd, R.S.6
Harris, C.M.7
Harris, T.M.8
Stone, M.P.9
-
107
-
-
0030657472
-
Base pair conformation-dependent excision of benzo[ a ]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes
-
Hess, M.T., Gunz, D., Luneva, N., Geacintov, N.E., and Naegeli, H. (1997) Base pair conformation-dependent excision of benzo[ a ]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes. Mol. Cell. Biol., 17, 7069-7076.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 7069-7076
-
-
Hess, M.T.1
Gunz, D.2
Luneva, N.3
Geacintov, N.E.4
Naegeli, H.5
-
108
-
-
0004228157
-
DNA Repair and Mutagenesis
-
ASM Press, Washington, DC
-
Friedberg, E.C., Walker, G.C., and Siede, W. (1995) DNA Repair and Mutagenesis, ASM Press, Washington, DC.
-
(1995)
-
-
Friedberg, E.C.1
Walker, G.C.2
Siede, W.3
-
109
-
-
0027505049
-
Repair by human cell extracts of single (6-4) and cyclobutane thymine-thymine photoproducts in DNA
-
Szymkowski, D.E., Lawrence, C.W., and Wood, R.D. (1993) Repair by human cell extracts of single (6-4) and cyclobutane thymine-thymine photoproducts in DNA. Proc. Natl. Acad. Sci. USA, 90, 9823-9827.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 9823-9827
-
-
Szymkowski, D.E.1
Lawrence, C.W.2
Wood, R.D.3
-
110
-
-
0038573011
-
Frequency and spectrum of mutations produced by a single cis-syn thymine-thymine cyclobutane dimer in a single-stranded vector
-
Banerjee, S.K., Christensen, R.B., Lawrence, C.W., and LeClerc, J.E. (1988) Frequency and spectrum of mutations produced by a single cis-syn thymine-thymine cyclobutane dimer in a single-stranded vector. Proc. Natl. Acad. Sci. USA, 85, 8141-8145.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 8141-8145
-
-
Banerjee, S.K.1
Christensen, R.B.2
Lawrence, C.W.3
LeClerc, J.E.4
-
111
-
-
23944515285
-
DNA quality control by conformational readout on the undamaged strand of the double helix
-
Buterin, T., Meyer, C., Giese, B., and Naegeli, H. (2005) DNA quality control by conformational readout on the undamaged strand of the double helix. Chem. Biol., 12, 913-922.
-
(2005)
Chem. Biol.
, vol.12
, pp. 913-922
-
-
Buterin, T.1
Meyer, C.2
Giese, B.3
Naegeli, H.4
-
112
-
-
0028117721
-
Solution conformation of the (+)-cis-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[ a ]pyrene into the helix with base displacement of the modifi ed deoxyguanosine into the minor groove
-
Cosman, M., Fiala, R., Hingerty, B.E., Amin, S., Geacintov, N.E., Broyde, S., and Patel, D.J. (1994) Solution conformation of the (+)-cis-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[ a ]pyrene into the helix with base displacement of the modifi ed deoxyguanosine into the minor groove. Biochemistry, 33, 11518-11527.
-
(1994)
Biochemistry
, vol.33
, pp. 11518-11527
-
-
Cosman, M.1
Fiala, R.2
Hingerty, B.E.3
Amin, S.4
Geacintov, N.E.5
Broyde, S.6
Patel, D.J.7
-
113
-
-
0034029834
-
Unrepaired fjord region polycyclic aromatic hydrocarbon-DNA adducts in ras codon 61 mutational hot spots
-
Buterin, T., Hess, M.T., Luneva, N., Geacintov, N.E., Amin, S., Kroth, H., Seidel, A., and Naegeli, H. (2000) Unrepaired fjord region polycyclic aromatic hydrocarbon-DNA adducts in ras codon 61 mutational hot spots. Cancer Res., 60, 1849-1856.
-
(2000)
Cancer Res.
, vol.60
, pp. 1849-1856
-
-
Buterin, T.1
Hess, M.T.2
Luneva, N.3
Geacintov, N.E.4
Amin, S.5
Kroth, H.6
Seidel, A.7
Naegeli, H.8
-
114
-
-
0030886735
-
Solution structure of the minor conformer of a DNA duplex containing a dG mismatch opposite a benzo[ a ] pyrene diol epoxide/dA adduct: glycosidic rotation from syn to anti at the modifi ed deoxyadenosine
-
Schwartz, J.L., Rice, J.S., Luxon, B.A., Sayer, J.M., Xie, G., Yeh, H.J., Liu, X., Jerina, D.M., and Gorenstein, D.G. (1997) Solution structure of the minor conformer of a DNA duplex containing a dG mismatch opposite a benzo[ a ] pyrene diol epoxide/dA adduct: glycosidic rotation from syn to anti at the modifi ed deoxyadenosine. Biochemistry, 36, 11069-11076.
-
(1997)
Biochemistry
, vol.36
, pp. 11069-11076
-
-
Schwartz, J.L.1
Rice, J.S.2
Luxon, B.A.3
Sayer, J.M.4
Xie, G.5
Yeh, H.J.6
Liu, X.7
Jerina, D.M.8
Gorenstein, D.G.9
-
115
-
-
0028927764
-
Direct synthesis and characterization of site-specifi c adenosyl adducts derived from the binding of a 3,4-dihydroxy-1,2-epoxybenzo[ c ] phenanthrene stereoisomer to an 11-mer oligodeoxyribonucleotide
-
Laryea, A., Cosman, M., Lin, J.M., Liu, T., Agarwal, R., Smirnov, S., Amin, S., Harvey, R.G., Dipple, A., and Geacintov, N.E. (1995) Direct synthesis and characterization of site-specifi c adenosyl adducts derived from the binding of a 3,4-dihydroxy-1,2-epoxybenzo[ c ] phenanthrene stereoisomer to an 11-mer oligodeoxyribonucleotide. Chem. Res. Toxicol., 8, 444-454.
-
(1995)
Chem. Res. Toxicol.
, vol.8
, pp. 444-454
-
-
Laryea, A.1
Cosman, M.2
Lin, J.M.3
Liu, T.4
Agarwal, R.5
Smirnov, S.6
Amin, S.7
Harvey, R.G.8
Dipple, A.9
Geacintov, N.E.10
-
116
-
-
0034614487
-
Sequence-dependent DNA structure: tetranucleotide conformational maps
-
Packer, M.J., Dauncey, M.P., and Hunter, C.A. (2000) Sequence-dependent DNA structure: tetranucleotide conformational maps. J. Mol. Biol., 295, 85-103.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 85-103
-
-
Packer, M.J.1
Dauncey, M.P.2
Hunter, C.A.3
-
117
-
-
0034614483
-
Sequence-dependent DNA structure: dinucleotide conformational maps
-
Packer, M.J., Dauncey, M.P., and Hunter, C.A. (2000) Sequence-dependent DNA structure: dinucleotide conformational maps. J. Mol. Biol., 295, 71-83.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 71-83
-
-
Packer, M.J.1
Dauncey, M.P.2
Hunter, C.A.3
-
118
-
-
0020385863
-
Mechanics of sequence-dependent stacking of bases in B-DNA
-
Calladine, C.R. (1982) Mechanics of sequence-dependent stacking of bases in B-DNA. J. Mol. Biol., 161, 343-352.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 343-352
-
-
Calladine, C.R.1
-
119
-
-
0027159020
-
CA runs increase DNA fl exibility in the complex of lambda Cro protein with the OR3 site
-
Lyubchenko, Y.L., Shlyakhtenko, L.S., Appella, E., and Harrington, R.E. (1993) CA runs increase DNA fl exibility in the complex of lambda Cro protein with the OR3 site. Biochemistry, 32, 4121-4127.
-
(1993)
Biochemistry
, vol.32
, pp. 4121-4127
-
-
Lyubchenko, Y.L.1
Shlyakhtenko, L.S.2
Appella, E.3
Harrington, R.E.4
-
120
-
-
0029006896
-
Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes
-
Young, M.A., Ravishanker, G., Beveridge, D.L., and Berman, H.M. (1995) Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes. Biophys. J., 68, 2454-2468.
-
(1995)
Biophys. J.
, vol.68
, pp. 2454-2468
-
-
Young, M.A.1
Ravishanker, G.2
Beveridge, D.L.3
Berman, H.M.4
-
121
-
-
0024974069
-
Sequence dependence of DNA conformational fl exibility
-
Sarai, A., Mazur, J., Nussinov, R., and Jernigan, R.L. (1989) Sequence dependence of DNA conformational fl exibility. Biochemistry, 28, 7842-7849.
-
(1989)
Biochemistry
, vol.28
, pp. 7842-7849
-
-
Sarai, A.1
Mazur, J.2
Nussinov, R.3
Jernigan, R.L.4
-
122
-
-
0026089491
-
Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles
-
Bolshoy, A., McNamara, P., Harrington, R.E., and Trifonov, E.N. (1991) Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles. Proc. Natl. Acad. Sci. USA, 88, 2312-2316.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 2312-2316
-
-
Bolshoy, A.1
McNamara, P.2
Harrington, R.E.3
Trifonov, E.N.4
-
123
-
-
0035807049
-
Base sequence effects in bending induced by bulky carcinogen-DNA adducts: experimental and computational analysis
-
Ruan, Q., Zhuang, P., Li, S., Perlow, R., Srinivasan, A.R., Lu, X.J., Broyde, S., Olson, W.K., and Geacintov, N.E. (2001) Base sequence effects in bending induced by bulky carcinogen-DNA adducts: experimental and computational analysis. Biochemistry, 40, 10458-10472.
-
(2001)
Biochemistry
, vol.40
, pp. 10458-10472
-
-
Ruan, Q.1
Zhuang, P.2
Li, S.3
Perlow, R.4
Srinivasan, A.R.5
Lu, X.J.6
Broyde, S.7
Olson, W.K.8
Geacintov, N.E.9
-
124
-
-
34250177258
-
Sequence context-and temperature-dependent nucleotide excision repair of a benzo[ a ]pyrene diol epoxide-guanine DNA adduct catalyzed by thermophilic UvrABC proteins
-
Ruan, Q., Liu, T., Kolbanovskiy, A., Liu, Y., Ren, J., Skorvaga, M., Zou, Y., Lader, J., Malkani, B., Amin, S., et al. (2007) Sequence context-and temperature-dependent nucleotide excision repair of a benzo[ a ]pyrene diol epoxide-guanine DNA adduct catalyzed by thermophilic UvrABC proteins. Biochemistry, 46, 7006-7015.
-
(2007)
Biochemistry
, vol.46
, pp. 7006-7015
-
-
Ruan, Q.1
Liu, T.2
Kolbanovskiy, A.3
Liu, Y.4
Ren, J.5
Skorvaga, M.6
Zou, Y.7
Lader, J.8
Malkani, B.9
Amin, S.10
-
125
-
-
0001550068
-
Predicting DNA duplex stability from the base sequence
-
Breslauer, K.J., Frank, R., Blocker, H., and Marky, L.A. (1986) Predicting DNA duplex stability from the base sequence. Proc. Natl. Acad. Sci. USA, 83, 3746-3750.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 3746-3750
-
-
Breslauer, K.J.1
Frank, R.2
Blocker, H.3
Marky, L.A.4
-
126
-
-
0029968822
-
Improved nearest-neighbor parameters for predicting DNA duplex stability
-
SantaLucia, J., Jr., Allawi, H.T., and Seneviratne, P.A. (1996) Improved nearest-neighbor parameters for predicting DNA duplex stability. Biochemistry, 35, 3555-3562.
-
(1996)
Biochemistry
, vol.35
, pp. 3555-3562
-
-
SantaLucia Jr, J.1
Allawi, H.T.2
Seneviratne, P.A.3
-
127
-
-
0032512426
-
Bending and circularization of site-specifi c and stereoisomeric carcinogen-DNA adducts
-
Xu, R., Mao, B., Amin, S., and Geacintov, N.E. (1998) Bending and circularization of site-specifi c and stereoisomeric carcinogen-DNA adducts. Biochemistry, 37, 769-778.
-
(1998)
Biochemistry
, vol.37
, pp. 769-778
-
-
Xu, R.1
Mao, B.2
Amin, S.3
Geacintov, N.E.4
-
128
-
-
0028790549
-
Conformational studies of the (+)-trans, (-)-trans, (+)-cis, and (-)-cis adducts of anti-benzo[ a ]pyrene diolepoxide to N 2-dG in duplex oligonucleotides using polyacrylamide gel electrophoresis and low-temperature fl uorescence spectroscopy
-
Suh, M., Ariese, F., Small, G.J., Jankowiak, R., Liu, T.M., and Geacintov, N.E. (1995) Conformational studies of the (+)-trans, (-)-trans, (+)-cis, and (-)-cis adducts of anti-benzo[ a ]pyrene diolepoxide to N 2-dG in duplex oligonucleotides using polyacrylamide gel electrophoresis and low-temperature fl uorescence spectroscopy. Biophys. Chem., 56, 281-296.
-
(1995)
Biophys. Chem.
, vol.56
, pp. 281-296
-
-
Suh, M.1
Ariese, F.2
Small, G.J.3
Jankowiak, R.4
Liu, T.M.5
Geacintov, N.E.6
-
129
-
-
60849113756
-
Nuclear magnetic resonance solution structure of covalent polycyclic aromatic carcinogen-DNA adducts: infl uence of base sequence context and carcinogen topology
-
New York University, New York
-
Rodríguez, F.A. (2007) Nuclear magnetic resonance solution structure of covalent polycyclic aromatic carcinogen-DNA adducts: infl uence of base sequence context and carcinogen topology. PhD Thesis. New York University, New York.
-
(2007)
PhD Thesis
-
-
Rodríguez, F.A.1
-
130
-
-
0032522139
-
DNA bending: the prevalence of kinkiness and the virtues of normality
-
Dickerson, R.E. (1998) DNA bending: the prevalence of kinkiness and the virtues of normality. Nucleic Acids Res., 26, 1906-1926.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1906-1926
-
-
Dickerson, R.E.1
-
131
-
-
84888713755
-
Studies of characteristics of DNA-polynuclear aromatic carcinogen adducts at atomic and molecular resolution levels
-
New York University, New York
-
Xu, R. (1994) Studies of characteristics of DNA-polynuclear aromatic carcinogen adducts at atomic and molecular resolution levels. PhD Thesis. New York University, New York.
-
(1994)
PhD Thesis
-
-
Xu, R.1
-
132
-
-
33744948123
-
Structural basis for DNA recognition and processing by UvrB
-
Truglio, J.J., Karakas, E., Rhau, B., Wang, H., Della Vecchia, M.J., Van Houten, B., and Kisker, C. (2006) Structural basis for DNA recognition and processing by UvrB. Nat. Struct. Mol. Biol., 13, 360-364.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 360-364
-
-
Truglio, J.J.1
Karakas, E.2
Rhau, B.3
Wang, H.4
Della Vecchia, M.J.5
Houten, V.B.6
Kisker, C.7
-
133
-
-
70349774465
-
Exploring damage recognition models in prokaryotic nucleotide excision repair with a benzo[ a ]pyrene-derived lesion in UvrB
-
Jia, L., Kropachev, K., Ding, S., Van Houten, B., Geacintov, N.E., and Broyde, S. (2009) Exploring damage recognition models in prokaryotic nucleotide excision repair with a benzo[ a ]pyrene-derived lesion in UvrB. Biochemistry, 48, 8948-8957.
-
(2009)
Biochemistry
, vol.48
, pp. 8948-8957
-
-
Jia, L.1
Kropachev, K.2
Ding, S.3
Houten, V.B.4
Geacintov, N.E.5
Broyde, S.6
-
134
-
-
0242396923
-
Nucleic Acid Res.
-
Lu, X.-J. and Olson, W.K. (2003) Nucleic Acid Res., 31, 5108-5121.
-
(2003)
, vol.31
, pp. 5108-5121
-
-
Lu, X.-J.1
Olson, W.K.2
-
135
-
-
84888755132
-
Journal of Molecular Biology
-
in press
-
Cai et al. (2010) Journal of Molecular Biology, in press.
-
(2010)
-
-
Cai et, al.1
|