-
1
-
-
0016299918
-
Structural details of a double-helix observed for DNA containing alternating purine-pyrimidine sequences
-
Arnott S., Chandrasekaran R., Hukins D. W. L., Smith P. J. C., Watts L. Structural details of a double-helix observed for DNA containing alternating purine-pyrimidine sequences. J. Mol. Biol. 88:1974;523-533.
-
(1974)
J. Mol. Biol.
, vol.88
, pp. 523-533
-
-
Arnott, S.1
Chandrasekaran, R.2
Hukins, D.W.L.3
Smith, P.J.C.4
Watts, L.5
-
2
-
-
0001425230
-
Multivariate analysis of a data matrix containing A-DNA and B-DNA dinucleoside monophosphate steps: Multidimensional Ramachandran plots for nucleic acids
-
Beckers M. L. M., Buydens L. M. C. Multivariate analysis of a data matrix containing A-DNA and B-DNA dinucleoside monophosphate steps: Multidimensional Ramachandran plots for nucleic acids. J. Comp. Chem. 19:1998;695-715.
-
(1998)
J. Comp. Chem.
, vol.19
, pp. 695-715
-
-
Beckers, M.L.M.1
Buydens, L.M.C.2
-
3
-
-
0032029586
-
Flexibility of the B-DNA backbone: Effects of loal and neighbouring sequences on pyrimidine-purine steps
-
Bertrand H. O., Haduong T., Fermandjian S., Hartmann B. Flexibility of the B-DNA backbone: effects of loal and neighbouring sequences on pyrimidine-purine steps. Nucl. Acids Res. 26:1998;1261-1267.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 1261-1267
-
-
Bertrand, H.O.1
Haduong, T.2
Fermandjian, S.3
Hartmann, B.4
-
4
-
-
0029039118
-
Sequence-dependent bending propensity of DNA as revealed by DNAse-I-parameters for trinucleotides
-
Brukner I., Sanchez R., Suck D., Pongor S. Sequence-dependent bending propensity of DNA as revealed by DNAse-I-parameters for trinucleotides. EMBO J. 14:1995;1812-1818.
-
(1995)
EMBO J.
, vol.14
, pp. 1812-1818
-
-
Brukner, I.1
Sanchez, R.2
Suck, D.3
Pongor, S.4
-
5
-
-
0020385863
-
Mechanics of sequence-dependent stacking of bases in B-DNA
-
Calladine C. R. Mechanics of sequence-dependent stacking of bases in B-DNA. J. Mol. Biol. 161:1982;343-352.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 343-352
-
-
Calladine, C.R.1
-
6
-
-
0029011701
-
A second generation force-field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell W. D., Cieplak P., Bayly C. I., Gould I. R., Merz K. M., Ferguson D. M., Spellmeyer D. C., Fox T., Caldwell J. W., Kollman P. A. A second generation force-field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 117:1995;5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
7
-
-
0032417682
-
DNA curvature and deformation in protein-DNA complexes: A step in the right direction
-
Crothers D. M. DNA curvature and deformation in protein-DNA complexes: a step in the right direction. Proc. Natl Acad. Sci. USA. 95:1998;15163-15165.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 15163-15165
-
-
Crothers, D.M.1
-
8
-
-
0026702486
-
DNA structure from A to Z
-
Dickerson R. E. DNA structure from A to Z. Methods Enzymol. 211:1992;67-111.
-
(1992)
Methods Enzymol.
, vol.211
, pp. 67-111
-
-
Dickerson, R.E.1
-
9
-
-
0032522139
-
DNA bending: The prevalence of kinkiness and the virtues of normality
-
Dickerson R. E. DNA bending: the prevalence of kinkiness and the virtues of normality. Nucl. Acids Res. 26:1998;1906-1926.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 1906-1926
-
-
Dickerson, R.E.1
-
10
-
-
0024974308
-
Definitions and nomenclature of nucleic acid structure parameters
-
Diekmann S. Definitions and nomenclature of nucleic acid structure parameters. J. Mol. Biol. 205:1989;787-791.
-
(1989)
J. Mol. Biol.
, vol.205
, pp. 787-791
-
-
Diekmann, S.1
-
11
-
-
0032530597
-
Unconventional helical phasing of repetitive DNA motifs reveals their relative beding contributions
-
Dlakic M., Harrington R. E. Unconventional helical phasing of repetitive DNA motifs reveals their relative beding contributions. Nucl. Acids Res. 26:1998;4274-4279.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 4274-4279
-
-
Dlakic, M.1
Harrington, R.E.2
-
12
-
-
0029126044
-
The assessment of the geometry of dinucleotide steps in double-helical DNA-a new local calculation scheme
-
El Hassan M. A., Calladine C. R. The assessment of the geometry of dinucleotide steps in double-helical DNA-a new local calculation scheme. J. Mol. Biol. 251:1995;648-664.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 648-664
-
-
El Hassan, M.A.1
Calladine, C.R.2
-
13
-
-
3142518260
-
Conformational characteristics of DNA: Empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps
-
El Hassan M. A., Calladine G. R. Conformational characteristics of DNA: empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps. Phil. Trans. ser. A. 355:1997a;43-100.
-
(1997)
Phil. Trans. Ser. a
, vol.355
, pp. 43-100
-
-
El Hassan, M.A.1
Calladine, G.R.2
-
14
-
-
33645088570
-
Curvature and torsion of infinitely repeating DNA sequences: A geometric investigation
-
El Hassan M. A., Calladine C. R. Curvature and torsion of infinitely repeating DNA sequences: a geometric investigation. Proc. Roy. Soc. Lond. ser. A. 453:1997b.
-
(1997)
Proc. Roy. Soc. Lond. Ser. a
, vol.453
-
-
El Hassan, M.A.1
Calladine, C.R.2
-
15
-
-
0032544507
-
Two distinct modes of protein-induced bending in DNA
-
El Hassan M. A., Calladine C. R. Two distinct modes of protein-induced bending in DNA. J. Mol. Biol. 282:1998;331-343.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 331-343
-
-
El Hassan, M.A.1
Calladine, C.R.2
-
16
-
-
0017587485
-
Theory of DNA melting curves
-
Fixman M., Friere J. J. Theory of DNA melting curves. Biopolymers. 16:1977;2693-2704.
-
(1977)
Biopolymers
, vol.16
, pp. 2693-2704
-
-
Fixman, M.1
Friere, J.J.2
-
17
-
-
0030576959
-
Distribution of bending propensity in DNA sequences
-
Gabrielian A., Simoncsits A., Pongor S. Distribution of bending propensity in DNA sequences. FEBS Letters. 393:1996;124-130.
-
(1996)
FEBS Letters
, vol.393
, pp. 124-130
-
-
Gabrielian, A.1
Simoncsits, A.2
Pongor, S.3
-
18
-
-
0028624664
-
Bending and curvature calculations in B-DNA
-
Goodsell D. S., Dickerson R. E. Bending and curvature calculations in B-DNA. Nucl. Acids Res. 22:1994;5497-5503.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 5497-5503
-
-
Goodsell, D.S.1
Dickerson, R.E.2
-
20
-
-
84985667623
-
Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles
-
Gotoh O., Tagashira Y. Stabilities of nearest-neighbor doublets in double-helical DNA determined by fitting calculated melting profiles to observed profiles. Biopolymers. 20:1981;1033-1042.
-
(1981)
Biopolymers
, vol.20
, pp. 1033-1042
-
-
Gotoh, O.1
Tagashira, Y.2
-
21
-
-
0027318463
-
Sequence-dependent DNA structure - The role of base stacking interaction
-
Hunter C. A. Sequence-dependent DNA structure - the role of base stacking interaction. J. Mol. Biol. 230:1993;1025-1054.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 1025-1054
-
-
Hunter, C.A.1
-
22
-
-
0030919777
-
Construction of double-helical DNA structures based on dinucleotide building blocks
-
Hunter C. A., Lu X. J. Construction of double-helical DNA structures based on dinucleotide building blocks. J. Biomol. Struct. Dynam. 14:1997a;747-756.
-
(1997)
J. Biomol. Struct. Dynam.
, vol.14
, pp. 747-756
-
-
Hunter, C.A.1
Lu, X.J.2
-
23
-
-
0031556948
-
DNA base stacking interactions - A comparison of theoretical calculations with oligonucleotide crystal structures
-
Hunter C. A., Lu X. J. DNA base stacking interactions - a comparison of theoretical calculations with oligonucleotide crystal structures. J. Mol. Biol. 265:1997b;603-619.
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 603-619
-
-
Hunter, C.A.1
Lu, X.J.2
-
26
-
-
0031592942
-
Structure and conformation of helical nucleic acids: Analysis program (SCHNAAP)
-
Lu X. J., El Hassan M. A., Hunter C. A. Structure and conformation of helical nucleic acids: analysis program (SCHNAAP). J. Mol. Biol. 273:1997;668-680.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 668-680
-
-
Lu, X.J.1
El Hassan, M.A.2
Hunter, C.A.3
-
27
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 Å resolution
-
Luger K., Mader A. W., Richmond R. K., Sargent D. F., Richmond T. J. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature. 389:1997;251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
28
-
-
0021099136
-
Conformational transitions in oriented fibers of the synthetic polynucleotide poly[d(AT)] poly[d(AT)] double helix
-
Mahendrasingam A., Rhodes N. J., Goodwin D. C., Nave C., Pigram W. J., Fuller W., Brahms J., Vergne J. Conformational transitions in oriented fibers of the synthetic polynucleotide poly[d(AT)] poly[d(AT)] double helix. Nature. 301:1983;535-537.
-
(1983)
Nature
, vol.301
, pp. 535-537
-
-
Mahendrasingam, A.1
Rhodes, N.J.2
Goodwin, D.C.3
Nave, C.4
Pigram, W.J.5
Fuller, W.6
Brahms, J.7
Vergne, J.8
-
29
-
-
84986437005
-
Macromodel: An integrated software system for modelling organic and bioorganic molecules using molecular mechanics
-
Mohamadi F., Richards N. G. J., Guida W. C., Liskamp R., Lipton M., Caulfield C., Chang G., Hendrickson T., Still W. C. Macromodel: an integrated software system for modelling organic and bioorganic molecules using molecular mechanics. J. Comp. Chem. 11:1990;440-467.
-
(1990)
J. Comp. Chem.
, vol.11
, pp. 440-467
-
-
Mohamadi, F.1
Richards, N.G.J.2
Guida, W.C.3
Liskamp, R.4
Lipton, M.5
Caulfield, C.6
Chang, G.7
Hendrickson, T.8
Still, W.C.9
-
30
-
-
0032530555
-
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
-
Olson W. K., Gorin A. A., Lu X. J., Hock L. M., Zhurkin V. B. DNA sequence-dependent deformability deduced from protein-DNA crystal complexes. Proc. Natl Acad. Sci. USA. 95:1998;11163-11168.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 11163-11168
-
-
Olson, W.K.1
Gorin, A.A.2
Lu, X.J.3
Hock, L.M.4
Zhurkin, V.B.5
-
31
-
-
0032540859
-
Sequence-dependent DNA structure: The role of the sugar-phosphate backbone
-
Packer M. J., Hunter C. A. Sequence-dependent DNA structure: the role of the sugar-phosphate backbone. J. Mol. Biol. 280:1998;407-420.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 407-420
-
-
Packer, M.J.1
Hunter, C.A.2
-
32
-
-
0034614487
-
Sequence-dependent DNA structure: Dinucleotide conformational maps
-
Packer M. J., Dauncey M. P., Hunter C. A. Sequence-dependent DNA structure: dinucleotide conformational maps. J. Mol. Biol. 295:1999;55-70.
-
(1999)
J. Mol. Biol.
, vol.295
, pp. 55-70
-
-
Packer, M.J.1
Dauncey, M.P.2
Hunter, C.A.3
-
33
-
-
0017276138
-
Polymorphism of a synthetic DNA in solution
-
Pohl F. M. Polymorphism of a synthetic DNA in solution. Nature. 260:1976;365-366.
-
(1976)
Nature
, vol.260
, pp. 365-366
-
-
Pohl, F.M.1
-
34
-
-
0015527119
-
Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-C)
-
Pohl F. M., Jovin T. M. Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly(dG-C). J. Mol. Biol. 67:1972;375-396.
-
(1972)
J. Mol. Biol.
, vol.67
, pp. 375-396
-
-
Pohl, F.M.1
Jovin, T.M.2
-
35
-
-
0020486214
-
The C conformation is a low salt form of sodium DNA
-
Rhodes N. J., Mahendrasingam A., Pigram W. J., Fuller W., Brahms J., Vergne J., Warren R. A. J. The C conformation is a low salt form of sodium DNA. Nature. 296:1982;267-269.
-
(1982)
Nature
, vol.296
, pp. 267-269
-
-
Rhodes, N.J.1
Mahendrasingam, A.2
Pigram, W.J.3
Fuller, W.4
Brahms, J.5
Vergne, J.6
Warren, R.A.J.7
-
37
-
-
0023001414
-
Sequence periodicities in chicken nucleosome core DNA
-
Satchwell S. C., Drew H. R., Travers A. A. Sequence periodicities in chicken nucleosome core DNA. J. Mol. Biol. 191:1986;659-675.
-
(1986)
J. Mol. Biol.
, vol.191
, pp. 659-675
-
-
Satchwell, S.C.1
Drew, H.R.2
Travers, A.A.3
-
38
-
-
0004246255
-
-
New York: Benjamin-Cummings
-
Watson J., Hopkins N., Roberts J., Weiner A., Steitz J. A. Molecular Biology of the Gene. 1988;Benjamin-Cummings, New York.
-
(1988)
Molecular Biology of the Gene
-
-
Watson, J.1
Hopkins, N.2
Roberts, J.3
Weiner, A.4
Steitz, J.A.5
-
39
-
-
0021757436
-
United atom proteins and nucleic acids
-
Weiner S. J., Kollman P. A., Case D. A., Singh U. C., Ghio C., Alagona G., Profeta S., Weiner P. United atom proteins and nucleic acids. J. Am. Chem. Soc. 106:1984;765-784.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 765-784
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.A.3
Singh, U.C.4
Ghio, C.5
Alagona, G.6
Profeta, S.7
Weiner, P.8
-
40
-
-
0025966606
-
Analysis of local helix geometry in 3 B-DNA decamers and 8 dodecamers
-
Yanagi K., Privé G. G., Dickerson R. E. Analysis of local helix geometry in 3 B-DNA decamers and 8 dodecamers. J. Mol. Biol. 217:1991;201-214.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 201-214
-
-
Yanagi, K.1
Privé, G.G.2
Dickerson, R.E.3
|