-
1
-
-
0033535413
-
Repair of DNA lesions: Mechanisms and relative repair efficiencies
-
Braithwaite E, Wu X, Wang Z. Repair of DNA lesions: mechanisms and relative repair efficiencies. Mutat Res 1999; 424:207-219.
-
(1999)
Mutat Res
, vol.424
, pp. 207-219
-
-
Braithwaite, E.1
Wu, X.2
Wang, Z.3
-
3
-
-
0032716382
-
Nucleotide excision repair from E coil to man
-
Petit C, Sancar A. Nucleotide excision repair from E. coil to man. Biochimie 1999; 81: 15-25.
-
(1999)
Biochimie
, vol.81
, pp. 15-25
-
-
Petit, C.1
Sancar, A.2
-
4
-
-
0032742715
-
DNA damage recognition during necleotide excision repair in mammalian cells
-
Wood RD. DNA damage recognition during necleotide excision repair in mammalian cells. Biochimie 1999; 81:39-44.
-
(1999)
Biochimie
, vol.81
, pp. 39-44
-
-
Wood, R.D.1
-
5
-
-
0141753120
-
The comings and goings of nucleotide excision repair factors on damged DNA
-
Riedl T, Hanaoka F, Egly JM. The comings and goings of nucleotide excision repair factors on damged DNA. Embo J 2003; 22:5293-5303.
-
(2003)
Embo J
, vol.22
, pp. 5293-5303
-
-
Riedl, T.1
Hanaoka, F.2
Egly, J.M.3
-
6
-
-
0029974576
-
Nucleotide excision repair in yeast is mediated by sequential assembly of repair factors and not by a pre-assembled repairosome
-
Guzder SN, Sung P, Prakash L, Prakash S. Nucleotide excision repair in yeast is mediated by sequential assembly of repair factors and not by a pre-assembled repairosome. J Biol Chem 1996; 271:8903-8910.
-
(1996)
J Biol Chem
, vol.271
, pp. 8903-8910
-
-
Guzder, S.N.1
Sung, P.2
Prakash, L.3
Prakash, S.4
-
7
-
-
0038339144
-
A novel regulation mechanism of DNA repair by damage-induced and RAD23-dependent stabilization of xeroderma pigmentosum group C protein
-
Ng JM, Vermeulen W, van der Horst GT, Bergink S, Sugasawa K, Vrieling H, Hoeijmakers JH. A novel regulation mechanism of DNA repair by damage-induced and RAD23-dependent stabilization of xeroderma pigmentosum group C protein. Genes Dev 2003; 17:1630-1645.
-
(2003)
Genes Dev
, vol.17
, pp. 1630-1645
-
-
Ng, J.M.1
Vermeulen, W.2
van der Horst, G.T.3
Bergink, S.4
Sugasawa, K.5
Vrieling, H.6
Hoeijmakers, J.H.7
-
8
-
-
0038687698
-
Defining the function of XPC protein in psoralen and cisplatin-mediated DNA repair and mutagenesis
-
Chen Z, Xu XS, Yang J, Wang G. Defining the function of XPC protein in psoralen and cisplatin-mediated DNA repair and mutagenesis. Carcinogenesis 2003; 24:1111-1121.
-
(2003)
Carcinogenesis
, vol.24
, pp. 1111-1121
-
-
Chen, Z.1
Xu, X.S.2
Yang, J.3
Wang, G.4
-
9
-
-
0035804828
-
Diversity of the damage recognition step in the global genomic necleotide excision repair in vitro
-
Kusumoto R, Masutani C, Sugasawa K, Iwai S, Araki M, Uchida A, Mizukoshi T, Hanaoka F. Diversity of the damage recognition step in the global genomic necleotide excision repair in vitro. Mutat Res 2001; 485:219-227.
-
(2001)
Mutat Res
, vol.485
, pp. 219-227
-
-
Kusumoto, R.1
Masutani, C.2
Sugasawa, K.3
Iwai, S.4
Araki, M.5
Uchida, A.6
Mizukoshi, T.7
Hanaoka, F.8
-
10
-
-
0030688064
-
Two human homologs of Rad23 are functionally interchangeable in complex formation and stimulation of XPC repair activity
-
Sugasawa K, Ng JM, Masutani C, Maekawa T, Uchida A, van der Spek PJ, Eker AP,Rademakers S,Visser C,Aboussekhra A,Wood RD,Hanaoka F, Bootsma D, Hoeijmakers JH. Two human homologs of Rad23 are functionally interchangeable in complex formation and stimulation of XPC repair activity. Mol Cell Biol 1997; 17:6924-6931.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 6924-6931
-
-
Sugasawa, K.1
Ng, J.M.2
Masutani, C.3
Maekawa, T.4
Uchida, A.5
van der Spek, P.J.6
Eker, A.P.7
Rademakers, S.8
Visser, C.9
Aboussekhra, A.10
Wood, R.D.11
Hanaoka, F.12
Bootsma, D.13
Hoeijmakers, J.H.14
-
11
-
-
0032134423
-
Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair
-
Sugasawa K, Ng JM, Masutani C, Iwai S, van der Spek PJ, Eker AP, Hanaoka F, Bootsma D, Hoeijmakers JH. Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair. Mol Cell 1998; 2:223-232.
-
(1998)
Mol Cell
, vol.2
, pp. 223-232
-
-
Sugasawa, K.1
Ng, J.M.2
Masutani, C.3
Iwai, S.4
van der Spek, P.J.5
Eker, A.P.6
Hanaoka, F.7
Bootsma, D.8
Hoeijmakers, J.H.9
-
12
-
-
0035282109
-
-
Sugasawa K, Okamoto T, Shimizu Y, Masutani C, Iwai S, Hanaoka F. A multistep damage recognition mechanism for global genomic necleotide excision repair Genes Dev 2001; 15:507-521.
-
(2001)
A multistep damage recognition mechanism for global genomic necleotide excision repair Genes Dev
, vol.15
, pp. 507-521
-
-
Sugasawa, K.1
Okamoto, T.2
Shimizu, Y.3
Masutani, C.4
Iwai, S.5
Hanaoka, F.6
-
13
-
-
0036012799
-
A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex
-
Sugasawa K, Shimizu Y, Iwai S, Hanaoka F. A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex. DNA Repair (Amst) 2002; 1:95-107.
-
(2002)
DNA Repair (Amst)
, vol.1
, pp. 95-107
-
-
Sugasawa, K.1
Shimizu, Y.2
Iwai, S.3
Hanaoka, F.4
-
14
-
-
0141567801
-
Critical DNA damage recognition functions of XPC-hHR23B and XPA-RPA in nucleotide excision repair
-
Thoma BS, Vasquez KM. Critical DNA damage recognition functions of XPC-hHR23B and XPA-RPA in nucleotide excision repair. Mol Carcinog 2003; 38:1-13.
-
(2003)
Mol Carcinog
, vol.38
, pp. 1-13
-
-
Thoma, B.S.1
Vasquez, K.M.2
-
15
-
-
0037115936
-
Subpathways of nucleotide excision repair and their regulation
-
Hanawalt PC. Subpathways of nucleotide excision repair and their regulation. Oncogene 2002; 21:8949-8956.
-
(2002)
Oncogene
, vol.21
, pp. 8949-8956
-
-
Hanawalt, P.C.1
-
16
-
-
0026527186
-
Solution confirmation of the major adduct between the carcinogen (+)-anti-benzo[a]pyrene diol epoxide and DNA
-
Cosman M, de los Santos C, Fiala R, Hingerty BE, Singh SB, Ibanez V, Margulis LA, Live D, Geacintov NE, Broyde S. Solution confirmation of the major adduct between the carcinogen (+)-anti-benzo[a]pyrene diol epoxide and DNA. Proc Natl Acad Sci USA 1992; 89:1914-1918.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 1914-1918
-
-
Cosman, M.1
de los Santos, C.2
Fiala, R.3
Hingerty, B.E.4
Singh, S.B.5
Ibanez, V.6
Margulis, L.A.7
Live, D.8
Geacintov, N.E.9
Broyde, S.10
-
17
-
-
0026734924
-
Influence of benzo[a]pyrene diol epoxide chirality on solution confirmations of DNA covalent adducts: The (.)-trans-anti-[BP]G.C adduct structure and comparision with the (+)-trans-anti-[BP]G.C enantiomer
-
de los Santos C, Cosman M, Hingerty BE, Ibanez V, Margulis LA, Geacintov NE, Broyde S, Patel DJ. Influence of benzo[a]pyrene diol epoxide chirality on solution confirmations of DNA covalent adducts: the (.)-trans-anti-[BP]G.C adduct structure and comparision with the (+)-trans-anti-[BP]G.C enantiomer. Biochemistry 1992; 31:5245-5252.
-
(1992)
Biochemistry
, vol.31
, pp. 5245-5252
-
-
de los Santos, C.1
Cosman, M.2
Hingerty, B.E.3
Ibanez, V.4
Margulis, L.A.5
Geacintov, N.E.6
Broyde, S.7
Patel, D.J.8
-
18
-
-
0031041812
-
NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: Principles, patterns, and diversity
-
Geacintov NE, Cosman M, Hingerty BE, Amin S, Broyde S, Patel DJ. NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity. Chem Res Toxicol 1997; 10:111-146.
-
(1997)
Chem Res Toxicol
, vol.10
, pp. 111-146
-
-
Geacintov, N.E.1
Cosman, M.2
Hingerty, B.E.3
Amin, S.4
Broyde, S.5
Patel, D.J.6
-
19
-
-
0035830956
-
Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: A link to tumorigenic activity
-
Lin CH, Huang X, Kolbanovsky A, Hingerty BE, Amin S, Broyde S, Geacintov NE, Patel DJ. Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity. J Mol Biol 2001; 306:1059-1080.
-
(2001)
J Mol Biol
, vol.306
, pp. 1059-1080
-
-
Lin, C.H.1
Huang, X.2
Kolbanovsky, A.3
Hingerty, B.E.4
Amin, S.5
Broyde, S.6
Geacintov, N.E.7
Patel, D.J.8
-
20
-
-
0033578861
-
Solution cofirmation of the (+)-trans-anti-benzo[g]chrysene-dA opposite dT in a DNA duplex
-
Suri AK, Mao B, Amin S, Geacintov NE, Patel DJ. Solution cofirmation of the (+)-trans-anti-benzo[g]chrysene-dA opposite dT in a DNA duplex. J Mol Biol 1999; 292: 289-307.
-
(1999)
J Mol Biol
, vol.292
, pp. 289-307
-
-
Suri, A.K.1
Mao, B.2
Amin, S.3
Geacintov, N.E.4
Patel, D.J.5
-
21
-
-
0033578345
-
Solution structure of the (+)-cis-anti-benzo[a]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex
-
Mao B, Gu Z, Gorin A, Chen J, Hingerty BE, Amin S, Broyde S, Geacintov NE, Patel DJ. Solution structure of the (+)-cis-anti-benzo[a]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex. Biochemistry 1999; 38:10831-10842.
-
(1999)
Biochemistry
, vol.38
, pp. 10831-10842
-
-
Mao, B.1
Gu, Z.2
Gorin, A.3
Chen, J.4
Hingerty, B.E.5
Amin, S.6
Broyde, S.7
Geacintov, N.E.8
Patel, D.J.9
-
22
-
-
0028838461
-
NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N6-amino group to (+)-(7R,8S,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene: An unusual syn glycosidic torsion angle at the modified dA
-
Yeh HJ, Sayer JM, Liu X, Altieri AS, Byrd RA, Lakshman MK, Yagi H, Schurter EJ, Gorenstein DG, Jerina DM. NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N6-amino group to (+)-(7R,8S,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene: an unusual syn glycosidic torsion angle at the modified dA. Biochemistry 1995; 34:13570-13581.
-
(1995)
Biochemistry
, vol.34
, pp. 13570-13581
-
-
Yeh, H.J.1
Sayer, J.M.2
Liu, X.3
Altieri, A.S.4
Byrd, R.A.5
Lakshman, M.K.6
Yagi, H.7
Schurter, E.J.8
Gorenstein, D.G.9
Jerina, D.M.10
-
23
-
-
0028943587
-
NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10R adduct derived from trans addition of a deoxyadenosine N6-amino group to (.)-(7S,8R,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene
-
Schurter EJ, Yeh HJ, Sayer JM, Lakshman MK, Yagi H, Jerina DM, Gorenstein DG. NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10R adduct derived from trans addition of a deoxyadenosine N6-amino group to (.)-(7S,8R,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene. Biochemistry 1995; 34:1364-1375.
-
(1995)
Biochemistry
, vol.34
, pp. 1364-1375
-
-
Schurter, E.J.1
Yeh, H.J.2
Sayer, J.M.3
Lakshman, M.K.4
Yagi, H.5
Jerina, D.M.6
Gorenstein, D.G.7
-
24
-
-
0029091659
-
Nuclear magnetic resonance solution structure of an undecanucleotide duplex with a complementary thymidine base opposite a 10R adduct derived from trans addition ofa deoxyadenosine N6-amino group to (-)-(7R,8S,9R,10S)-7,8-dihydroxy-9,10-expoxy-7,8,9,10-tetrahydrobenzo[a]pyrene
-
Schurter EJ, Sayer JM, Oh-hara T, Yeh HJ, Yagi H, Luxon BA, Jerina DM, Gorenstein DG. Nuclear magnetic resonance solution structure of an undecanucleotide duplex with a complementary thymidine base opposite a 10R adduct derived from trans addition ofa deoxyadenosine N6-amino group to (-)-(7R,8S,9R,10S)-7,8-dihydroxy-9,10-expoxy-7,8,9,10-tetrahydrobenzo[a]pyrene. Biochemistry 1995; 34:9009-9020.
-
(1995)
Biochemistry
, vol.34
, pp. 9009-9020
-
-
Schurter, E.J.1
Sayer, J.M.2
Oh-hara, T.3
Yeh, H.J.4
Yagi, H.5
Luxon, B.A.6
Jerina, D.M.7
Gorenstein, D.G.8
-
25
-
-
0030886735
-
Solution structure of the minor conformer of a DNA duplex containing a dG mismatch opposite a benzo[a]pyrene diol epoxide/dA adduct: Glycosidic rotation from syn to anti at the modified deoxyadenosine
-
Schwartz JL, Rice JS, Luxon BA, Sayer JM, Xie G, Yeh HJ, Liu X, Jerina DM, Gorenstein DG. Solution structure of the minor conformer of a DNA duplex containing a dG mismatch opposite a benzo[a]pyrene diol epoxide/dA adduct: glycosidic rotation from syn to anti at the modified deoxyadenosine. Biochemistry 1997; 36:11069-11076.
-
(1997)
Biochemistry
, vol.36
, pp. 11069-11076
-
-
Schwartz, J.L.1
Rice, J.S.2
Luxon, B.A.3
Sayer, J.M.4
Xie, G.5
Yeh, H.J.6
Liu, X.7
Jerina, D.M.8
Gorenstein, D.G.9
-
26
-
-
0034700268
-
NMR evidence for syn-anti interconversion of a trans opened (10R)-dA adduct of benzo[a]pyrene (7S,8R)-diol (9R,10S)-epoxide in a DNA duplex
-
Volk DE, Rice JS, Luxon BA, Yeh HJ, Liang C, Xie G, Sayer JM, Jerina DM, Gorenstein DG. NMR evidence for syn-anti interconversion of a trans opened (10R)-dA adduct of benzo[a]pyrene (7S,8R)-diol (9R,10S)-epoxide in a DNA duplex. Biochemistry 2000; 39:14040-14053.
-
(2000)
Biochemistry
, vol.39
, pp. 14040-14053
-
-
Volk, D.E.1
Rice, J.S.2
Luxon, B.A.3
Yeh, H.J.4
Liang, C.5
Xie, G.6
Sayer, J.M.7
Jerina, D.M.8
Gorenstein, D.G.9
-
27
-
-
0035918576
-
Solution structure of a trans-opened (10S)-dA adduct of (+)-(7S,8R,9S,10R,)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a fully complementary DNA duplex: Evidence for a mojor syn confirmation
-
Pradhan P, Tirumala S, Liu X, Sayer JM, Jerina DM, Yeh HJ. Solution structure of a trans-opened (10S)-dA adduct of (+)-(7S,8R,9S,10R,)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a fully complementary DNA duplex:evidence for a mojor syn confirmation. Biochemistry 2001; 40:5870-5881.
-
(2001)
Biochemistry
, vol.40
, pp. 5870-5881
-
-
Pradhan, P.1
Tirumala, S.2
Liu, X.3
Sayer, J.M.4
Jerina, D.M.5
Yeh, H.J.6
-
28
-
-
12244283733
-
Solution structure of a cis-opened (10R)-N6-deoxyadenosine adduct of (9S,10R)-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA duplex
-
Volk DE, Thiviyanathan V, Rice JS, Luxon BA, Shah JH, Yagi H, Sayer JM, Yeh HJ, Jerina DM, Gorenstein DG. Solution structure of a cis-opened (10R)-N6-deoxyadenosine adduct of (9S,10R)-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a DNA duplex. Biochemistry 2003; 42:1410-1420.
-
(2003)
Biochemistry
, vol.42
, pp. 1410-1420
-
-
Volk, D.E.1
Thiviyanathan, V.2
Rice, J.S.3
Luxon, B.A.4
Shah, J.H.5
Yagi, H.6
Sayer, J.M.7
Yeh, H.J.8
Jerina, D.M.9
Gorenstein, D.G.10
-
29
-
-
0029989672
-
Adduction of the human N-ras codon 61 sequence with (-)-(7S,8R,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene: Structural refinement of the intercalated SRSR(61,2) (-)-(7S,8R,9S,10R)-N6[10-(7,8,9,10- terahydrobenzo[a]pyreny1)]-2'-deoxyadenosy1 adduct from 1H NMR
-
Zegar IS, Kim SJ, Johansen TN, Horton PJ, Harris CM, Harris TM, Stone MP. Adduction of the human N-ras codon 61 sequence with (-)-(7S,8R,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene: structural refinement of the intercalated SRSR(61,2) (-)-(7S,8R,9S,10R)-N6[10-(7,8,9,10- terahydrobenzo[a]pyreny1)]-2'-deoxyadenosy1 adduct from 1H NMR. Biochemistry 1996; 35:6212-6224.
-
(1996)
Biochemistry
, vol.35
, pp. 6212-6224
-
-
Zegar, I.S.1
Kim, S.J.2
Johansen, T.N.3
Horton, P.J.4
Harris, C.M.5
Harris, T.M.6
Stone, M.P.7
-
30
-
-
0032564393
-
Multiple conformations of an intercalated (-)-(7S,8R,9S, 10R)-N6-[10-(7,8,9,10-tetrahydrobenzo[a]pyreny1)]-2'-deoxyadenosy1 adduct in the N-ras codon 61 sequence
-
Zegar IS, Chary P, Jabil RJ, Tamura PJ, Johansen TN, Lloyd RS, Harris CM, Harris TM, Stone MP. Multiple conformations of an intercalated (-)-(7S,8R,9S, 10R)-N6-[10-(7,8,9,10-tetrahydrobenzo[a]pyreny1)]-2'-deoxyadenosy1 adduct in the N-ras codon 61 sequence. Biochemistry 1998; 37:16516-16528.
-
(1998)
Biochemistry
, vol.37
, pp. 16516-16528
-
-
Zegar, I.S.1
Chary, P.2
Jabil, R.J.3
Tamura, P.J.4
Johansen, T.N.5
Lloyd, R.S.6
Harris, C.M.7
Harris, T.M.8
Stone, M.P.9
-
31
-
-
0037418565
-
Minor groove orientation for the (1S,2R,3S,4R)-N2-[1-(1,2,3,4-tetrahydro-2,3,4-trihydroxybenz[a]anthraceny1)]-2'-deoxyguanosy1 adduct in the N-ras codon 12 sequence
-
Kim HY, Wilkinson AS, Harris CM, Harris TM, Stone MP. Minor groove orientation for the (1S,2R,3S,4R)-N2-[1-(1,2,3,4-tetrahydro-2,3,4-trihydroxybenz[a]anthraceny1)]-2'-deoxyguanosy1 adduct in the N-ras codon 12 sequence. Biochemistry 2003; 42: 2328-2338.
-
(2003)
Biochemistry
, vol.42
, pp. 2328-2338
-
-
Kim, H.Y.1
Wilkinson, A.S.2
Harris, C.M.3
Harris, T.M.4
Stone, M.P.5
-
33
-
-
0028859115
-
Synthesis and characterization of covalent adducts derived from the binding of benzo[a]-pyrene diol expoxide to a -GGG- sequence in a deoxyoligonucleotide
-
Mao B, Xu J, Li B, Margulis LA, Smirnov S, Ya NQ, Courtney SH, Geacintov NE. Synthesis and characterization of covalent adducts derived from the binding of benzo[a]-pyrene diol expoxide to a -GGG- sequence in a deoxyoligonucleotide. Carcinogenesis 1995; 16:357-365.
-
(1995)
Carcinogenesis
, vol.16
, pp. 357-365
-
-
Mao, B.1
Xu, J.2
Li, B.3
Margulis, L.A.4
Smirnov, S.5
Ya, N.Q.6
Courtney, S.H.7
Geacintov, N.E.8
-
34
-
-
0028927764
-
Direct synthesis and characterization of site-specific adenosy1 adducts derived from the binding of a 3,4-dihydroxy-1,2-epoxybenzo[c]phenanthrene stereoisomer to an 11-mer oligodeoxyribonucleotide
-
Laryea A, Cosman M, Lin JM, Liu T, Agarwal R, Smirnov S, Amin S, Harvey RG, Dipple A, Geacintov NE. Direct synthesis and characterization of site-specific adenosy1 adducts derived from the binding of a 3,4-dihydroxy-1,2-epoxybenzo[c]phenanthrene stereoisomer to an 11-mer oligodeoxyribonucleotide. Chem Res Toxicol 1995; 8:444-454.
-
(1995)
Chem Res Toxicol
, vol.8
, pp. 444-454
-
-
Laryea, A.1
Cosman, M.2
Lin, J.M.3
Liu, T.4
Agarwal, R.5
Smirnov, S.6
Amin, S.7
Harvey, R.G.8
Dipple, A.9
Geacintov, N.E.10
-
35
-
-
0036174219
-
Synthesis and characterization of site-specific and stereoisomeric fjord dibenzo[a,1]pyrene diol epoxide-N(6)-adenine adducts: Unusual thermal stabilization of modified DNA duplexes
-
Ruan Q, Kolbanovskiy A, Zhuang P, Chen J, Krzeminski J, Amin S, Geacintov NE. Synthesis and characterization of site-specific and stereoisomeric fjord dibenzo[a,1]pyrene diol epoxide-N(6)-adenine adducts: unusual thermal stabilization of modified DNA duplexes. Chem Res Toxicol 2002; 15:249-261.
-
(2002)
Chem Res Toxicol
, vol.15
, pp. 249-261
-
-
Ruan, Q.1
Kolbanovskiy, A.2
Zhuang, P.3
Chen, J.4
Krzeminski, J.5
Amin, S.6
Geacintov, N.E.7
-
36
-
-
0033259105
-
Total synthesis, mass spectrometric sequencing, and stabilities of oligonucleotide duplexes with single trans-anti-BDPE-N6-dA lesions in N-ras codon 61 and other sequence contexts
-
Krzeminski J, Ni JS, Zhuang P, Luneva N, Amin S, Geacintov NE. Total synthesis, mass spectrometric sequencing, and stabilities of oligonucleotide duplexes with single trans-anti-BDPE-N6-dA lesions in N-ras codon 61 and other sequence contexts. Polycycl Arom Compd 1999; 17:1-10.
-
(1999)
Polycycl Arom Compd
, vol.17
, pp. 1-10
-
-
Krzeminski, J.1
Ni, J.S.2
Zhuang, P.3
Luneva, N.4
Amin, S.5
Geacintov, N.E.6
-
37
-
-
0001207698
-
Thermal stabilities of benzo[a]pyrene diol epoxide-modified oligonucleotide duplexes. Effects of mismatched complementary strands and bulges. Struct Biol State of the Art
-
Ya N-Q, Smirnov S, Cosman M, Bhanot S, Ibanez V, Geacintov NE. Thermal stabilities of benzo[a]pyrene diol epoxide-modified oligonucleotide duplexes. Effects of mismatched complementary strands and bulges. Struct Biol State of the Art, Proc on Conversation Discip Biomol Stereodyn, 8th, 1994; 2:349-366.
-
(1994)
Proc on Conversation Discip Biomol Stereodyn, 8th
, vol.2
, pp. 349-366
-
-
Ya, N.-Q.1
Smirnov, S.2
Cosman, M.3
Bhanot, S.4
Ibanez, V.5
Geacintov, N.E.6
-
38
-
-
0037027367
-
Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery
-
Geacintov NE, Broyde S, Buterin T, Naegeli H, Wu M, Yan SX, Patel DJ. Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery. Biopolymers 2002; 65:202-210.
-
(2002)
Biopolymers
, vol.65
, pp. 202-210
-
-
Geacintov, N.E.1
Broyde, S.2
Buterin, T.3
Naegeli, H.4
Wu, M.5
Yan, S.X.6
Patel, D.J.7
-
39
-
-
0034521981
-
Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models
-
Kollman PA, Massova I, Reyes C, Kuhn B, Huo S, Chong L, Lee M, Lee T, Duan Y, Wang W, Donini O, Cieplak P, Srinivasan J, Case DA, Cheatham TE. Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res 2000; 33:889-897.
-
(2000)
Acc Chem Res
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
Donini, O.11
Cieplak, P.12
Srinivasan, J.13
Case, D.A.14
Cheatham, T.E.15
-
40
-
-
0032054952
-
Simulations of the molecular dynamics of nucleic acids
-
Auffinger P, Westnof E. Simulations of the molecular dynamics of nucleic acids. Curr Opin Struct Biol 1998; 8:27-36.
-
(1998)
Curr Opin Struct Biol
, vol.8
, pp. 27-36
-
-
Auffinger, P.1
Westnof, E.2
-
41
-
-
14244271476
-
Molecular dynamics simulation of nucleic acids: Successes, limitations, and promise
-
Cheatham TE, Young MA. Molecular dynamics simulation of nucleic acids: successes, limitations, and promise. Biopolymers 2001; 56:232-256.
-
(2001)
Biopolymers
, vol.56
, pp. 232-256
-
-
Cheatham, T.E.1
Young, M.A.2
-
42
-
-
0036682090
-
Relating repair susceptibility of carcinogen-damaged DNA with structural distortion and thermodynamic stability
-
Wu M, Yan S, Patel DJ, Geacintov NE, Broyde S. Relating repair susceptibility of carcinogen-damaged DNA with structural distortion and thermodynamic stability. Nucleic Acids Res 2002; 30:3422-3432.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3422-3432
-
-
Wu, M.1
Yan, S.2
Patel, D.J.3
Geacintov, N.E.4
Broyde, S.5
-
43
-
-
0037418535
-
Role of Base Sequence Context in Conformational Equilibria and Nucleotide Excision Repair ofBenzo[a]pyrene Diol Epoxide-Adenine Adducts
-
Yan S, Wu M, Buterin T, Naegeli H, Geacintov NE, Broyde S. Role of Base Sequence Context in Conformational Equilibria and Nucleotide Excision Repair ofBenzo[a]pyrene Diol Epoxide-Adenine Adducts. Biochemistry 2003; 42:2339-2354.
-
(2003)
Biochemistry
, vol.42
, pp. 2339-2354
-
-
Yan, S.1
Wu, M.2
Buterin, T.3
Naegeli, H.4
Geacintov, N.E.5
Broyde, S.6
-
44
-
-
0037380917
-
Simulating structural and thermodynamic properties of carcinogen-damaged DNA
-
Yan S, Wu M, Patel DJ, Geacintov NE, Broyde S. Simulating structural and thermodynamic properties of carcinogen-damaged DNA. Biophys J 2003; 84:2137-2148.
-
(2003)
Biophys J
, vol.84
, pp. 2137-2148
-
-
Yan, S.1
Wu, M.2
Patel, D.J.3
Geacintov, N.E.4
Broyde, S.5
-
45
-
-
0034822656
-
Stereochemical, structural and thermodynamic origins of stability differences between stereoisomeric benzo[a]pyrene diol epoxide deoxyadenosine adducts in a DNA mutational hot spot sequence
-
Yan S, Shapiro R, Geacintov NE, Broyde S. Stereochemical, structural and thermodynamic origins of stability differences between stereoisomeric benzo[a]pyrene diol epoxide deoxyadenosine adducts in a DNA mutational hot spot sequence. J Am Chem Soc 2001; 123:7054-7066.
-
(2001)
J Am Chem Soc
, vol.123
, pp. 7054-7066
-
-
Yan, S.1
Shapiro, R.2
Geacintov, N.E.3
Broyde, S.4
-
46
-
-
0032561318
-
Stereoselectivity of human nuecleotide excision repair promoted by defective hybridization
-
Hess MT, Naegeli H, Capobianco M. Stereoselectivity of human nuecleotide excision repair promoted by defective hybridization. J Biol Chem 1998; 273:27867-27872.
-
(1998)
J Biol Chem
, vol.273
, pp. 27867-27872
-
-
Hess, M.T.1
Naegeli, H.2
Capobianco, M.3
-
47
-
-
12644312174
-
Bipartite substrate discrimination by human nucleotide excision repair
-
Hess MT, Schwitter U, Petretta M, Giese B, Naegeli H. Bipartite substrate discrimination by human nucleotide excision repair. Proc Natl Acad Sci USA 1997; 94:6664-6669.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 6664-6669
-
-
Hess, M.T.1
Schwitter, U.2
Petretta, M.3
Giese, B.4
Naegeli, H.5
-
48
-
-
0033065080
-
Recognition of non-hybridizing base pairs during nucleotide excision repair of DNA
-
Buschta-Hedayat N, Buterin T, Hess MT, Missura M, Naegeli H. Recognition of non-hybridizing base pairs during nucleotide excision repair of DNA. Proc Natl Acad Sci USA 1999; 96:6090-6095.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 6090-6095
-
-
Buschta-Hedayat, N.1
Buterin, T.2
Hess, M.T.3
Missura, M.4
Naegeli, H.5
-
49
-
-
0020431144
-
Induction of microsomal enzymes by foreign chemicals and carcinogenesis by polycyclic aromatic hydrocarbons: G.H.A. Clowes Memorial Lecture
-
Conney AH. Induction of microsomal enzymes by foreign chemicals and carcinogenesis by polycyclic aromatic hydrocarbons: G.H.A. Clowes Memorial Lecture. Cancer Res 1982; 42:4875-917.
-
(1982)
Cancer Res
, vol.42
, pp. 4875-4917
-
-
Conney, A.H.1
-
50
-
-
0031910204
-
DNA adduct formation by polycyclic aromatic hydrocarbon dihydrodiol epoxides
-
Szeliga J, Dipple A. DNA adduct formation by polycyclic aromatic hydrocarbon dihydrodiol epoxides. Chem Res Toxicol 1998; 11:1-11.
-
(1998)
Chem Res Toxicol
, vol.11
, pp. 1-11
-
-
Szeliga, J.1
Dipple, A.2
-
51
-
-
0028071555
-
Mutations in the p53 tumor suppressor gene: Clues to cancer etiology and molecular pathogenesis
-
Greenblatt MS, Bennett WP, Hollstein M, Harris CC. Mutations in the p53 tumor suppressor gene: clues to cancer etiology and molecular pathogenesis. Cancer Res 1994; 54:4855-4878.
-
(1994)
Cancer Res
, vol.54
, pp. 4855-4878
-
-
Greenblatt, M.S.1
Bennett, W.P.2
Hollstein, M.3
Harris, C.C.4
-
52
-
-
0035477426
-
Methylated CpG dinucleotides are the preferential targets for G-to-T transversion mutations induced by benzo[a]pyrene diol epoxide in mammalian cells: Similarities with the p53 mutation spectrum in smoking-associated lung cancers
-
Yoon JH, Smith LE, Feng Z, Tang M, Lee CS, Pfeifer GP. Methylated CpG dinucleotides are the preferential targets for G-to-T transversion mutations induced by benzo[a]pyrene diol epoxide in mammalian cells: similarities with the p53 mutation spectrum in smoking-associated lung cancers. Cancer Res 2001; 61:7110-7117.
-
(2001)
Cancer Res
, vol.61
, pp. 7110-7117
-
-
Yoon, J.H.1
Smith, L.E.2
Feng, Z.3
Tang, M.4
Lee, C.S.5
Pfeifer, G.P.6
-
53
-
-
0037152628
-
Tobacco smoke carcinogens, DNA damage and p53 mutations in smoking-associated cancers
-
Pfeifer GP, Denissenko MF, Olivier M, Tretyakova N, Hecht SS, Hainaut P. Tobacco smoke carcinogens, DNA damage and p53 mutations in smoking-associated cancers. Oncogene 2002; 21:7435-7451.
-
(2002)
Oncogene
, vol.21
, pp. 7435-7451
-
-
Pfeifer, G.P.1
Denissenko, M.F.2
Olivier, M.3
Tretyakova, N.4
Hecht, S.S.5
Hainaut, P.6
-
54
-
-
0032832051
-
Cancer initiation by polycyclic aromatic hydrocarbons results from formation of stable DNA adducts rather than apurinic sites
-
Melendez-Colon VJ, Luch A, Seidel A, Baird WM. Cancer initiation by polycyclic aromatic hydrocarbons results from formation of stable DNA adducts rather than apurinic sites. Carcinogenesis 1999; 20:1885-1891.
-
(1999)
Carcinogenesis
, vol.20
, pp. 1885-1891
-
-
Melendez-Colon, V.J.1
Luch, A.2
Seidel, A.3
Baird, W.M.4
-
55
-
-
0032565541
-
Polycyclic aromatic hydrocarbon-DNA adducts in humans: Relevance as biomarkers for exposure and cancer risk
-
Kriek E, Rojas M, Alexandrov K, Bartsch H. Polycyclic aromatic hydrocarbon-DNA adducts in humans: relevance as biomarkers for exposure and cancer risk. Mutat Res 1998; 400:215-231.
-
(1998)
Mutat Res
, vol.400
, pp. 215-231
-
-
Kriek, E.1
Rojas, M.2
Alexandrov, K.3
Bartsch, H.4
-
56
-
-
0034679057
-
Targeting of lung cancer mutational hotspots by polycyclic aromatic hydrocarbons
-
Smith LE, Denissenko MF, Bennett WP, Li H, Amin S, Tang M, Pfeifer GP. Targeting of lung cancer mutational hotspots by polycyclic aromatic hydrocarbons. J Natl Cancer Inst 2000; 92:803-811.
-
(2000)
J Natl Cancer Inst
, vol.92
, pp. 803-811
-
-
Smith, L.E.1
Denissenko, M.F.2
Bennett, W.P.3
Li, H.4
Amin, S.5
Tang, M.6
Pfeifer, G.P.7
-
57
-
-
0033535436
-
Polycyclic aromatic hydrocarbons: Correlations between DNA adducts and ras oncogene mutations
-
Ross JA, Nesnow S. Polycyclic aromatic hydrocarbons: correlations between DNA adducts and ras oncogene mutations. Mutat Res 1999; 424:155-166.
-
(1999)
Mutat Res
, vol.424
, pp. 155-166
-
-
Ross, J.A.1
Nesnow, S.2
-
58
-
-
0030657472
-
Base pair conformation-dependent excision of benzo[a]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes
-
Hess MT, Gunz D, Luneva N, Geacintov NE, Naegeli H. Base pair conformation-dependent excision of benzo[a]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes. Mol Cell Biol 1997; 17:7069-7076.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 7069-7076
-
-
Hess, M.T.1
Gunz, D.2
Luneva, N.3
Geacintov, N.E.4
Naegeli, H.5
-
59
-
-
0034029834
-
Unrepaired fjord region polycyclic aromatic hydrocarbon-DNA adducts in ras codon 61 mutational hot spots
-
Buterin T, Hess MT, Luneva NP, Geacintov NE, Amin S, Kroth H, Seidel A, Naegeli H. Unrepaired fjord region polycyclic aromatic hydrocarbon-DNA adducts in ras codon 61 mutational hot spots. Cancer Res 2000; 60:1849-1856.
-
(2000)
Cancer Res
, vol.60
, pp. 1849-1856
-
-
Buterin, T.1
Hess, M.T.2
Luneva, N.P.3
Geacintov, N.E.4
Amin, S.5
Kroth, H.6
Seidel, A.7
Naegeli, H.8
-
60
-
-
0030087999
-
Site-specific DNA substrates for human excision repair: Comparision between deoxyribose and base adducts
-
Hess MT, Schwitter U, Petretta M, Giese B, Naegeli H. Site-specific DNA substrates for human excision repair: comparision between deoxyribose and base adducts. Chem Biol 1996; 3:121-128.
-
(1996)
Chem Biol
, vol.3
, pp. 121-128
-
-
Hess, M.T.1
Schwitter, U.2
Petretta, M.3
Giese, B.4
Naegeli, H.5
-
61
-
-
84862802048
-
-
CA: University of Calfornia
-
Case DA, Darden TA, Cheatham TE, Simmerling CL, Wang J, Duke RE, Luo R, Merz KM, Wang B, Pearlman DA, Crowley M, Brozell S, Tsui V, Gohlke H, Mongan J, Cui G, Beroza P, Schafmeister C, Caldwell JW, Ross WS, Kollman P. AMBER San Fransisco, CA: University of Calfornia, 2004.
-
(2004)
AMBER San Fransisco
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Merz, K.M.8
Wang, B.9
Pearlman, D.A.10
Crowley, M.11
Brozell, S.12
Tsui, V.13
Gohlke, H.14
Mongan, J.15
Cui, G.16
Beroza, P.17
Schafmeister, C.18
Caldwell, J.W.19
Ross, W.S.20
Kollman, P.21
more..
-
62
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids and organic molecules
-
Cornell W, Cieplak P, Bayly CI, Gould IR, Merz KM Jr, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW and Kollman PA. A second generation force field for the simulation of proteins, nucleic acids and organic molecules. J Am Chem Soc 1995; 117:5179-5197.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
63
-
-
0032922174
-
A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat
-
Cheatham TE, Cieplak P, Kollman PA. A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat. J Biomol Struct Dynam 1999:16:845-862.
-
(1999)
J Biomol Struct Dynam
, vol.16
, pp. 845-862
-
-
Cheatham, T.E.1
Cieplak, P.2
Kollman, P.A.3
-
64
-
-
0032560959
-
Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate-DNA helices
-
Srinivasan J, Cheatham TE, Cieplak P, Kollman PA, Case DA. Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate-DNA helices. J Am Chem Soc 1998; 120:9401-9409.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 9401-9409
-
-
Srinivasan, J.1
Cheatham, T.E.2
Cieplak, P.3
Kollman, P.A.4
Case, D.A.5
-
65
-
-
0032556243
-
Free energy analysis of the conformational preferences of A and B forms of DNA in solution
-
Jayaram B, Sprous D, Young MA, Bereridge DL. Free energy analysis of the conformational preferences of A and B forms of DNA in solution. J Am Chem Soc 1998; 120: 10629-10633.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 10629-10633
-
-
Jayaram, B.1
Sprous, D.2
Young, M.A.3
Bereridge, D.L.4
-
66
-
-
0031788539
-
Molecular dynamics and continumm solvent studies of the stability of poly-G-polyC and polyA-polyT DNA duplexes in solution
-
Cheatham TE, Srinivasan J, Case DA, Kollman PA. Molecular dynamics and continumm solvent studies of the stability of poly-G-polyC and polyA-polyT DNA duplexes in solution. J Biomol Struct Dyn 1998; 16:265-280.
-
(1998)
J Biomol Struct Dyn
, vol.16
, pp. 265-280
-
-
Cheatham, T.E.1
Srinivasan, J.2
Case, D.A.3
Kollman, P.A.4
-
67
-
-
0035861989
-
Unrestrained 5 ns molecular dynamics simulation of a cisplatin-DNA 1,2-GG adduct provides a rationale for the NMR features and reveals increased conformational flexibility at the platinum binding site
-
Elizondo-Riojas M-A, Kozelka J. Unrestrained 5 ns molecular dynamics simulation of a cisplatin-DNA 1,2-GG adduct provides a rationale for the NMR features and reveals increased conformational flexibility at the platinum binding site. J Mol Biol 2001; 314:1227-1243.
-
(2001)
J Mol Biol
, vol.314
, pp. 1227-1243
-
-
Elizondo-Riojas, M.-A.1
Kozelka, J.2
-
68
-
-
0030745348
-
Unrestrained molecular dynamics of photoda-maged DNA in aqueous solution
-
Spector TI, Cheatham TE, Kollman PA. Unrestrained molecular dynamics of photoda-maged DNA in aqueous solution. J Am Chem Soc 1997; 119:7095-7104.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 7095-7104
-
-
Spector, T.I.1
Cheatham, T.E.2
Kollman, P.A.3
-
69
-
-
0032817450
-
Origins of conformational differences between cis and trans DNA adducts derived from enantiomeric anti-benzo[a]pyrene diol epoxides
-
Xie XM, Geacintov NE, Broyde S. Origins of conformational differences between cis and trans DNA adducts derived from enantiomeric anti-benzo[a]pyrene diol epoxides. Chem Res Toxicol 1999; 12:597-609.
-
(1999)
Chem Res Toxicol
, vol.12
, pp. 597-609
-
-
Xie, X.M.1
Geacintov, N.E.2
Broyde, S.3
-
70
-
-
0033537638
-
Stereochemical origin of opposite orientations in DNA adducts derived from enantiomeric anti-benzo[a]pyrene diol epoxides with different tumorigenic potentials
-
Xie XM, Geacintov NE, Broyde S. Stereochemical origin of opposite orientations in DNA adducts derived from enantiomeric anti-benzo[a]pyrene diol epoxides with different tumorigenic potentials. Biochemistry 1999; 38:2956-2968.
-
(1999)
Biochemistry
, vol.38
, pp. 2956-2968
-
-
Xie, X.M.1
Geacintov, N.E.2
Broyde, S.3
-
71
-
-
0033796107
-
Conformational determines of structures in stereoisomeric cis-opened anti-benzo[a]pyrene diol epoxide adducts to adenine in DNA
-
Tan J, Geacintov NE, Broyde S. Conformational determines of structures in stereoisomeric cis-opened anti-benzo[a]pyrene diol epoxide adducts to adenine in DNA. Chem Res Toxicol 2000; 13:811-822.
-
(2000)
Chem Res Toxicol
, vol.13
, pp. 811-822
-
-
Tan, J.1
Geacintov, N.E.2
Broyde, S.3
-
72
-
-
0034607407
-
Principles governing conformations in stereoisomeric adducts of bay region benzo[a]pyrene diol epoxides to adenine in DNA: Steric and hydrophobic effects are dominant
-
Tan J, Geacintov NE, Broyde S. Principles governing conformations in stereoisomeric adducts of bay region benzo[a]pyrene diol epoxides to adenine in DNA: Steric and hydrophobic effects are dominant. J Am Chem Soc 2000; 122:3021-3032.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 3021-3032
-
-
Tan, J.1
Geacintov, N.E.2
Broyde, S.3
-
73
-
-
0027215240
-
Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: Intercalation of the covalently attached benzo[a]pyreny1 ring into the helix and displacement of the modified deoxyguanosine
-
Cosman M, de los Santos C, Fiala R, Hingerty BE, Ibanez V, Luna E, Harvey R, Geacintov NE, Broyde S, Patel DJ. Solution conformation of the (+)-cis-anti-[BP]dG adduct in a DNA duplex: intercalation of the covalently attached benzo[a]pyreny1 ring into the helix and displacement of the modified deoxyguanosine. Biochemistry 1993; 32:4145-4155.
-
(1993)
Biochemistry
, vol.32
, pp. 4145-4155
-
-
Cosman, M.1
de los Santos, C.2
Fiala, R.3
Hingerty, B.E.4
Ibanez, V.5
Luna, E.6
Harvey, R.7
Geacintov, N.E.8
Broyde, S.9
Patel, D.J.10
-
74
-
-
0029764542
-
Solution conformation of the (-)-cis-anti-benzo[a]pyreny1-dG adduct opposite dC in a DNA duplex: Intercalation of the covalently attached BP ring in to the helix with base displacement of the modified deoxyguanosine into the major groove
-
Cosman M, Hingerty BE, Luneva NP, Amin S, Geacintov NE, Broyde S, Patel DJ. Solution conformation of the (-)-cis-anti-benzo[a]pyreny1-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring in to the helix with base displacement of the modified deoxyguanosine into the major groove. Biochemistry 1996; 35:9850-9863.
-
(1996)
Biochemistry
, vol.35
, pp. 9850-9863
-
-
Cosman, M.1
Hingerty, B.E.2
Luneva, N.P.3
Amin, S.4
Geacintov, N.E.5
Broyde, S.6
Patel, D.J.7
-
75
-
-
0027525482
-
Solution conformation of the (+)-trans-anti-[BPh]dA adduct opposite dT in a DNA duplex: Intercalation of the covalently attached benzo[c]phenanthrene to the 5'-side of the adduct site without disruption of the modified base pair
-
Cosman M, Fiala R, Hingerty BE, Laryea A, Lee H, Harvey RG, Amin S, Geacintov NE, Broyde S, Patel DJ. Solution conformation of the (+)-trans-anti-[BPh]dA adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[c]phenanthrene to the 5'-side of the adduct site without disruption of the modified base pair. Biochemistry 1993; 32:12488-12497.
-
(1993)
Biochemistry
, vol.32
, pp. 12488-12497
-
-
Cosman, M.1
Fiala, R.2
Hingerty, B.E.3
Laryea, A.4
Lee, H.5
Harvey, R.G.6
Amin, S.7
Geacintov, N.E.8
Broyde, S.9
Patel, D.J.10
-
76
-
-
0028988423
-
Solution conformation of the (-)-trans-anti-benzo[c]phenanthrene-dA ([BPh]dA) adduct opposite dT in a DNA duplex: Intercalation of the covalently attached benzo[c]phenanthreny1 ring to the 3'-side of the adduct site and comparison with the (+)-trans-anti-[BPh]dA opposite dT stereoisomer
-
Cosman M, Laryea A, Fiala R, Hingerty BE, Amin S, Geacintov NE, Broyde S, Patel DJ. Solution conformation of the (-)-trans-anti-benzo[c]phenanthrene-dA ([BPh]dA) adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[c]phenanthreny1 ring to the 3'-side of the adduct site and comparison with the (+)-trans-anti-[BPh]dA opposite dT stereoisomer. Biochemistry 1995; 34:1295-1307.
-
(1995)
Biochemistry
, vol.34
, pp. 1295-1307
-
-
Cosman, M.1
Laryea, A.2
Fiala, R.3
Hingerty, B.E.4
Amin, S.5
Geacintov, N.E.6
Broyde, S.7
Patel, D.J.8
-
77
-
-
0028874944
-
Major groove (R)-alpha-(N6-adeny1)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequence: Conformations of the R(61,2) and R (61,3) sequence isomers from 1H NMR
-
Feng B, Zhou L, Passarelli M, Harris CM, Harris TM, Stone MP. Major groove (R)-alpha-(N6-adeny1)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequence: conformations of the R(61,2) and R (61,3) sequence isomers from 1H NMR. Biochemistry 1995; 34:14021-14036.
-
(1995)
Biochemistry
, vol.34
, pp. 14021-14036
-
-
Feng, B.1
Zhou, L.2
Passarelli, M.3
Harris, C.M.4
Harris, T.M.5
Stone, M.P.6
-
78
-
-
0029952630
-
Major groove (S)-alpha-(N6-adeny1)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequences: Conformations of the S(61,2) and S(61,3) sequence isomers from I H NMR
-
Feng B, Voehler M, Zhou L, Passarelli M, Harris CM, Harris TM, Stone MP. Major groove (S)-alpha-(N6-adeny1)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequences: conformations of the S(61,2) and S(61,3) sequence isomers from I H NMR. Biochemistry 1996; 35:7316-7329.
-
(1996)
Biochemistry
, vol.35
, pp. 7316-7329
-
-
Feng, B.1
Voehler, M.2
Zhou, L.3
Passarelli, M.4
Harris, C.M.5
Harris, T.M.6
Stone, M.P.7
-
79
-
-
15344346375
-
Coformational searches elucidate effects of stereochemistry on structures of deoxyadenosine covalently bound to tumorigenic metabolites of benzo[c]phenanthrene
-
Wu M, Yan X, Tan J, Patel DJ, Geacintov NE, Broyde S. Coformational searches elucidate effects of stereochemistry on structures of deoxyadenosine covalently bound to tumorigenic metabolites of benzo[c]phenanthrene. Frontier in Bioscience 2004; 9: 2807-2818.
-
(2004)
Frontier in Bioscience
, vol.9
, pp. 2807-2818
-
-
Wu, M.1
Yan, X.2
Tan, J.3
Patel, D.J.4
Geacintov, N.E.5
Broyde, S.6
-
80
-
-
0027457947
-
Structural characterization of an N-acety1-2 aminofluorene (AAF) modified DNA oligomer by NMR,energy minimization, and molecular dynamics
-
O'Handley SF, Sanford DG, Xu R, Lester CC, Hingerty BE, Broyde S, Krugh TR. Structural characterization of an N-acety1-2 aminofluorene (AAF) modified DNA oligomer by NMR,energy minimization, and molecular dynamics. Biochemistry 1993; 32: 2481-2497.
-
(1993)
Biochemistry
, vol.32
, pp. 2481-2497
-
-
O'Handley, S.F.1
Sanford, D.G.2
Xu, R.3
Lester, C.C.4
Hingerty, B.E.5
Broyde, S.6
Krugh, T.R.7
-
81
-
-
0023406843
-
Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves
-
Marky LA, Breslauer KJ. Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves. Biopolymers 1987; 26:1601-1620.
-
(1987)
Biopolymers
, vol.26
, pp. 1601-1620
-
-
Marky, L.A.1
Breslauer, K.J.2
-
82
-
-
0030009945
-
Differential hydration thermodynamics of stereoisomeric DNA-Benzo[a]pyrene adducts derived from diol epoxide enantiomers with different tumorigenic potentials
-
Marky LA, Rentzeperis D, Luneva NP, Cosman M, Geacintov NE, Kupke DW. Differential hydration thermodynamics of stereoisomeric DNA-Benzo[a]pyrene adducts derived from diol epoxide enantiomers with different tumorigenic potentials. J Am Chem Soc 1996; 118:3804-3810.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 3804-3810
-
-
Marky, L.A.1
Rentzeperis, D.2
Luneva, N.P.3
Cosman, M.4
Geacintov, N.E.5
Kupke, D.W.6
-
83
-
-
0029840823
-
Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism
-
Gunz D, Hess MT, Naegeli H. Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism. J Biol Chem 1996; 271:25089-25098.
-
(1996)
J Biol Chem
, vol.271
, pp. 25089-25098
-
-
Gunz, D.1
Hess, M.T.2
Naegeli, H.3
-
84
-
-
0035662786
-
Cyclohexene ring and Fjord region twist inversion in stereoisomeric DNA adducts of enantiomeric benzo[c]phenanthrene diol epoxides
-
Wu M, Yan S, Patel DJ, Geacintov NE, Broyde S. Cyclohexene ring and Fjord region twist inversion in stereoisomeric DNA adducts of enantiomeric benzo[c]phenanthrene diol epoxides. Chem Res Toxicol 2001; 14:1629-1642.
-
(2001)
Chem Res Toxicol
, vol.14
, pp. 1629-1642
-
-
Wu, M.1
Yan, S.2
Patel, D.J.3
Geacintov, N.E.4
Broyde, S.5
-
85
-
-
0024394912
-
Prediction of DNA structure from sequence: A build-up technique
-
Hingerty BE, Figueroa S, Hayden TL, Broyde S. Prediction of DNA structure from sequence: a build-up technique. Biopolymers 1989; 28:1195-1222.
-
(1989)
Biopolymers
, vol.28
, pp. 1195-1222
-
-
Hingerty, B.E.1
Figueroa, S.2
Hayden, T.L.3
Broyde, S.4
-
87
-
-
0002676376
-
The structure of overcrowded compounds. Part VII. Out-of-plane deformation in benzo[c]phenanthrene and 1,12-dimethy1-benzo[c]phenanthrene
-
Hirschfeld FL. The structure of overcrowded compounds. Part VII. Out-of-plane deformation in benzo[c]phenanthrene and 1,12-dimethy1-benzo[c]phenanthrene. J Chem Soc 1963; 11:2126-2135.
-
(1963)
J Chem Soc
, vol.11
, pp. 2126-2135
-
-
Hirschfeld, F.L.1
-
88
-
-
0031687879
-
Dibenzo[a,1]pyrene (dibenzo[def,p]chrysene): Fjord-region distortions
-
Kaufman-Katz A, Carrell HL, Glusker JP. Dibenzo[a,1]pyrene (dibenzo[def,p]chrysene): fjord-region distortions. Carcinogenesis 1998; 19:1641-1648.
-
(1998)
Carcinogenesis
, vol.19
, pp. 1641-1648
-
-
Kaufman-Katz, A.1
Carrell, H.L.2
Glusker, J.P.3
-
89
-
-
85133813398
-
Structural and thermodynamic studies of dibenso[a,1]pyrene diol epoxide DNA adducts. American Association for Cancer Research
-
Washington, D.C
-
Guo J, Geacintov NE, Broyde S. Structural and thermodynamic studies of dibenso[a,1]pyrene diol epoxide DNA adducts. American Association for Cancer Research, Proceedings of the 94th Annual Meeting, Washington, D.C., 2003; 44:450.
-
(2003)
Proceedings of the 94th Annual Meeting
, vol.44
, pp. 450
-
-
Guo, J.1
Geacintov, N.E.2
Broyde, S.3
-
90
-
-
0026002897
-
Comparative dose-response tumorigenicity studies of dibenz[a,1]pyrene versus 7,12-dimethylbenzanthracene, benzo[a]pyrene and two dibenzo [a,1]pyrene dihydrodiols in mouse skin and rat mammary gland
-
Cavalieri EL, Higginbotham S, RamaKrishna NVS, Devanesan PD, Todorovic R, Rogan EG, Salmasi S. Comparative dose-response tumorigenicity studies of dibenz[a,1]pyrene versus 7,12-dimethylbenzanthracene, benzo[a]pyrene and two dibenzo [a,1]pyrene dihydrodiols in mouse skin and rat mammary gland. Carcinogenesis 1991; 12:1939-1944.
-
(1991)
Carcinogenesis
, vol.12
, pp. 1939-1944
-
-
Cavalieri, E.L.1
Higginbotham, S.2
RamaKrishna, N.V.S.3
Devanesan, P.D.4
Todorovic, R.5
Rogan, E.G.6
Salmasi, S.7
-
91
-
-
0029142955
-
Mammary carcinogenicity in female CD rate of fjord region diol epoxides of benzo[c]phenanthrene, benzo[g]chrysene and dibenzo[a]pyrene
-
Amin S, Krzeminski J, Rivenson A, Kurtzke C, Hecht SS, El-Bayoumi K. Mammary carcinogenicity in female CD rate of fjord region diol epoxides of benzo[c]phenanthrene, benzo[g]chrysene and dibenzo[a]pyrene. Carcinogenesis 1995; 16:1971-1974.
-
(1995)
Carcinogenesis
, vol.16
, pp. 1971-1974
-
-
Amin, S.1
Krzeminski, J.2
Rivenson, A.3
Kurtzke, C.4
Hecht, S.S.5
El-Bayoumi, K.6
-
92
-
-
0027374020
-
Tumor initiating activity on mouse skin of bay region diol epoxides of 5,6-dimethylchrysene and benzo[c]phenanthrene
-
Amin S, Desai D, Hecht SS. Tumor initiating activity on mouse skin of bay region diol epoxides of 5,6-dimethylchrysene and benzo[c]phenanthrene. Carcinogenesis 1993; 14: 2033-2037.
-
(1993)
Carcinogenesis
, vol.14
, pp. 2033-2037
-
-
Amin, S.1
Desai, D.2
Hecht, S.S.3
-
93
-
-
0028887082
-
Tumorigenicity in newborn mice of fjord region and other sterically hindered diol epoxides of benzo[g]chrysene, dibenzo[a,1]pyrene(dibenzo[def,p]chrysene), 4H-cycloppenta[def]chrysene, and fluoranthere
-
Amin S, Desai D, Dai W, Harvey RG, Hecht SS. Tumorigenicity in newborn mice of fjord region and other sterically hindered diol epoxides of benzo[g]chrysene, dibenzo[a,1]pyrene(dibenzo[def,p]chrysene), 4H-cycloppenta[def]chrysene, and fluoranthere. Carcinogenesis 1995; 16:2813-2817.
-
(1995)
Carcinogenesis
, vol.16
, pp. 2813-2817
-
-
Amin, S.1
Desai, D.2
Dai, W.3
Harvey, R.G.4
Hecht, S.S.5
-
94
-
-
0027955178
-
Potent mammary carcinogenicity in female CD rats of a fjord region diol epoxide to benzo[c]phenanthrene compared to a bay region diol-epoxide of benzo[a]pyrene
-
Hecht SS, El-Bayoumi K, Rivenson A, Amin S. Potent mammary carcinogenicity in female CD rats of a fjord region diol epoxide to benzo[c]phenanthrene compared to a bay region diol-epoxide of benzo[a]pyrene. Cancer Res 1994; 54:21-24.
-
(1994)
Cancer Res
, vol.54
, pp. 21-24
-
-
Hecht, S.S.1
El-Bayoumi, K.2
Rivenson, A.3
Amin, S.4
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