Transfer and expression of small interfering RNAs in mammalian cells using lentiviral vectors

Acta Naturae

Volumn 5, Issue 17, 2013, Pages 7-18

  Lebedev, T D ^a   Spirin, P V ^a   Prassolov, V S ^a  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

Author keywords

Lentiviral vectors; RNA interference; ShRNA

Indexed keywords

LENTIVIRUS; MAMMALIA;

EID: 84887350836     PISSN: 20758251     EISSN: None     Source Type: Journal    
DOI: 10.32607/20758251-2013-5-2-7-18     Document Type: Review

References (96)

1. Meister G., Tuschl T.//Nature. 2004. V. 431. No. 7006. P. 343-349.
2. Tomari Y., Zamore P.D.//Genes Dev. 2005. V. 19. No. 5. P. 517-529.
3. Kim K., Lee Y.S., Carthew R.W.//RN A. 2007. V. 13. No. 1. P. 22-29.
4. Macrae I.J., Ma E., Zhou M., Robinson C.V., Doudna J.A.//Proc. Natl. Acad. Sci. USA. 2008. V. 105. No. 2. P. 512-517.
5. Collins R.E., Cheng X.//FEBS Lett. 2005. V. 579. No. 26. P. 5841-5849.
6. Shen B., Goodman H.M.//Science. 2004. V. 306. No. 5698. P. 997.
7. Carthew R.W., Sontheimer E.J.//Cell. 2009. V. 136. No. 4. P. 642-655.
8. Lippman Z., Martienssen R.//Nature. 2004. V. 431. No. 7006. P. 364-370.
9. Kim V.N.//Nat. Rev. Mol. Cell Biol. 2005. V. 6. No. 5. P. 376-385.
10. Bartel D.P.//Cell. 2004. V. 116. No. 2. P. 281-297.
11. Han J., Lee Y., Yeom K.H., Nam J.W., Heo I., Rhee J.K., Sohn S.Y., Cho Y., Zhang B.T., Kim V.N.//Cell. 2006. V. 125. No. 5. P. 887-901.
12. Yi R., Qin Y., Macara I.G., Cullen B.R.//Genes Dev. 2003. V. 17. No. 24. P. 3011-3016.
13. Gregory R.I., Chendrimada T.P., Cooch N., Shiekhattar R.//Cell. 2005. V. 123. No. 4. P. 631-640.
14. Lai E.C.//Nat. Genet. 2002. V. 30. No. 4. P. 363-364.
15. Wu L., Fan J., Belasco J.G.//Proc. Natl. Acad. Sci. USA. 2006. V. 103. No. 11. P. 4034-4039.
16. Agrawal N., Dasaradhi P.V., Mohmmed A., Malhotra P., Bhatnagar R.K., Mukherjee S.K.//Microbiol. Mol. Biol. Rev. 2003. V. 67. No. 4. P. 657-685.
17. Van den Haute C., Eggermont K., Nuttin B., Debyser Z., Baekelandt V.//Hum. Gene Ther. 2003. V. 14. No. 18. P. 1799-1807.
18. Cockrell A.S., Kafri T.//Mol. Biotechnol. 2007. V. 36. No. 3. P. 184-204.
19. Spirin P.V., Vil'gelm A.E., Prassolov V.S.//Mol Biol (Mosk). 2008. V. 42. No. 5. P. 913-926.
20. Pluta K., Kacprzak M.M.//Acta Biochim. Pol. 2009. V. 56. No. 4. P. 531-595.
21. Kotsopoulou E., Kim V.N., Kingsman A.J., Kingsman S.M., Mitrophanous K.A.//J. Virol. 2000. V. 74. No. 10. P. 4839-4852.
22. Kappes J.C., Wu X., Wakefield J.K.//Methods Mol. Med. 2003. V. 76. P. 449-465.
23. Aiken C.//J. Virol. 1997. V. 71. No. 8. P. 5871-5877.
24. Croyle M.A., Callahan S.M., Auricchio A., Schumer G., Linse K.D., Wilson J.M., Brunner L.J., Kobinger G.P.//J. Virol. 2004. V. 78. No. 2. P. 912-921.
25. Cronin J., Zhang X.Y., Reiser J.//Curr. Gene Ther. 2005. V. 5. No. 4. P. 387-398.
26. Bartosch B., Vitelli A., Granier C., Goujon C., Dubuisson J., Pascale S., Scarselli E., Cortese R., Nicosia A., Cosset F.L.//J. Biol. Chem. 2003. V. 278. No. 43. P. 41624-41630.
27. Mazarakis N.D., Azzouz M., Rohll J.B., Ellard F.M., Wilkes F.J., Olsen A.L., Carter E.E., Barber R.D., Baban D.F., Kingsman S.M., et al.//Hum. Mol. Genet. 2001. V. 10. No. 19. P. 2109-2121.
28. Frecha C., Szécsi J., Cosset F.L., Verhoeyen E.//Curr. Gene Ther. 2008. V. 8. No. 6. P. 449-460.
29. Verhoeyen E., Cosset F.L.//J. Gene Med. 2004. V. 6. Suppl 1. P. S83-S94.
30. Mátrai J., Chuah M.K., Van den Driessche T.//Mol. Ther. 2010. V. 18. No. 3. P. 477-490.
31. Funke S., Maisner A., Mühlebach M.D., Koehl U., Grez M., Cattaneo R., Cichutek K., Buchholz C.J.//Mol. Ther. 2008. V. 16. No. 8. P. 1427-1436.
32. Maurice M., Verhoeyen E., Salmon P., Trono D., Russell S.J., Cosset F.L.//Blood. 2002. V. 99. No. 7. P. 2342-2350.
33. Verhoeyen E., Dardalhon V., Ducrey-Rundquist O., Trono D., Taylor N., Cosset F.L.//Blood. 2003. V. 101. No. 6. P. 2167-2174.
34. Verhoeyen E., Nègre D., Cosset F.L.//Methods Mol. Biol. 2008. V. 434. P. 99-112.
35. Froelich S., Ziegler L., Stroup K., Wang P.//Biotechnol. Bioeng. 2009. V. 104. No. 1. P. 206-215.
36. Lei Y., Joo K.I., Zarzar J., Wong C., Wang P.//Virol. J. 2010. V. 7. P. 35.
37. Yang L., Bailey L., Baltimore D., Wang P.//Proc. Natl. Acad. Sci. USA. 2006. V. 103. No. 31. P. 11479-11484.
38. Yang H., Joo K.I., Ziegler L., Wang P.//Pharm. Res. 2009. V. 26. No. 6. P. 1432-1445.
39. Yang L., Yang H., Rideout K., Cho T., Joo K.I., Ziegler L., Elliot A., Walls A., Yu D., Baltimore D., et al.//Nat. Biotechnol. 2008. V. 26. No. 3. P. 326-334.
40. Morizono K., Bristol G., Xie Y.M., Kung S.K., Chen I.S.//J. Virol. 2001. V. 75. No. 17. P. 8016-8020.
41. Cui Y., Kelleher E., Straley E., Fuchs E., Gorski K., Levitsky H., Borrello I., Civin C.I., Schoenberger S.P., Cheng L., et al.//Nat. Med. 2003. V. 9. No. 7. P. 952-958.
42. Gruh I., Wunderlich S., Winkler M., Schwanke K., Heinke J., Blömer U., Ruhparwar A., Rohde B., Li R.K., Haverich A., et al.//J. Gene Med. 2008. V. 10. No. 1. P. 21-32.
43. Dykxhoorn D.M., Novina C.D., Sharp P.A.//Nat. Rev. Mol. Cell. Biol. 2003. V. 4. No. 6. P. 457-467.
44. Boden D., Pusch O., Lee F., Tucker L., Shank P.R., Ramratnam B.//Nucl. Acids Res. 2003. V. 31. No. 17. P. 5033-5038.
45. Tiscornia G., Singer O., Verma I.M.//Nat. Protoc. 2006. V. 1. No. 1. P. 234-240.
46. Spirin P.V., Baskaran D., Rubtsov P.M., Zenkova M.A., Vlassov V.V., Chernolovskaya E.L., Prassolov V.S.//Acta Naturae. 2009. V. 1. No. 2. P. 86-90.
47. Spirin P.V., Nikitenko N.A., Lebedev T.D., Rubtsov P.M., Stocking C., Prassolov V.S.//Mol Biol (Mosk). 2011. V. 45. No. 6. P. 1036-1045.
48. Grimm D., Streetz K.L., Jopling C.L., Storm T.A., Pandey K., Davis C.R., Marion P., Salazar F., Kay M.A.//Nature. 2006. V. 441. No. 7092. P. 537-541.
49. Hornung V., Ellegast J., Kim S., Brzozka K., Jung A., Kato H., Poeck H., Akira S., Conzelmann K.K., Schlee M., et al.//Science. 2006. V. 314. No. 5801. P. 994-997.
50. Pichlmair A., Schulz O., Tan C.P., Naslund T.I., Liljestrom P., Weber F., Reis e Sousa C.//Science. 2006. V. 314. No. 5801. P. 997-1001.
51. Kenworthy R., Lambert D., Yang F., Wang N., Chen Z., Zhu H., Zhu F., Liu C., Li K., Tang H.//Nucl. Acids Res. 2009. V. 37. No. 19. P. 6587-6599.
52. Scherer L.J., Frank R., Rossi J.J.//Nucl. Acids Res. 2007. V. 35. No. 8. P. 2620-2628.
53. Ehsani A., Saetrom P., Zhang J., Alluin J., Li H., Snøve O. Jr., Aagaard L., Rossi J.J.//Mol. Ther. 2010. V. 18. No. 4. P. 796-802.
54. An D.S., Qin F.X., Auyeung V.C., Mao S.H., Kung S.K., Baltimore D., Chen I.S.//Mol. Ther. 2006. V. 14. No. 4. P. 494-504.
55. Gupta S., Maitra R., Young D., Gupta A., Sen S.//Am. J. Physiol. Heart Circ. Physiol. 2009. V. 297. No. 2. P. 627-636.
56. Bot I., Guo J., van Eck M., van Santbrink P.J., Groot P.H., Hildebrand R.B., Seppen J., van Berkel T.J., Biessen E.A.//Blood. 2005. V. 106. No. 4. P. 1147-1153.
57. Eren-Koçak E., Turner C.A., Watson S.J., Akil H.//Biol. Psychiatry. 2011. V. 69. No. 6. P. 534-540.
58. Mäkinen P.I., Koponen J.K., Kärkkäinen A.M., Malm T.M., Pulkkinen K.H., Koistinaho J., Turunen M.P., Ylä-Herttuala S.//J. Gene Med. 2006. V. 8. No. 4. P. 433-441.
59. Manjunath N., Wu H., Subramanya S., Shankar P.//Adv. Drug Deliv. Rev. 2009. V. 61. No. 9. P. 732-745.
60. McBride J.L., Boudreau R.L., Harper S.Q., Staber P.D., Monteys A.M., Martins I., Gilmore B.L., Burstein H., Peluso R.W., Polisky B., et al.//Proc. Natl. Acad. Sci. USA. 2008. V. 105. No. 15. P. 5868-5873.
61. Zeng Y., Wagner E.J., Cullen B.R.//Mol. Cell. 2002. V. 9. No. 6. P. 1327-1333.
62. Amendola M., Passerini L., Pucci F., Gentner B., Bacchetta R., Naldini L.//Mol. Ther. 2009. V. 17. No. 6. P. 1039-1052.
63. Chung K.H., Hart C.C., Al-Bassam S., Avery A., Taylor J., Patel P.D., Vojtek A.B., Turner D.L.//Nucl. Acids Res. 2006. V. 34. No. 7. P. 53.
64. Sano M., Li H., Nakanishi M., Rossi J.J.//Mol. Ther. 2008. V. 16. No. 1. P. 170-177.
65. Watanabe T., Sudoh M., Miyagishi M., Akashi H., Arai M., Inoue K., Taira K., Yoshiba M., Kohara M.//Gene Ther. 2006. V. 13. No. 11. P. 883-892.
66. Weinberg M.S., Ely A., Barichievy S., Crowther C., Mufamadi S., Carmona S., Arbuthnot P.//Mol. Ther. 2007. V. 15. No. 3. P. 534-541.
67. Brake O., Hooft K.T., Liu Y.P., Centlivre M., von Eije K.J., Berkhout B.//Mol. Ther. 2008. V. 16. No. 3. P. 557-564.
68. Gou D., Weng T., Wang Y., Wang Z., Zhang H., Gao L., Chen Z., Wang P., Liu L.//J. Gene Med. 2007. V. 9. No. 9. P. 751-763.
69. Liu Y.P., Haasnoot J., ter Brake O., Berkhout B., Konstantinova P.//Nucl. Acids Res. 2008. V. 36. No. 9. P. 2811-2824.
70. Ashfaq U.A., Yousaf M.Z., Aslam M., Ejaz R., Jahan S., Ullah O.//Virol. J. 2011. V. 8. P. 276.
71. Morris K.V., Rossi J.J.//3 2006. V. 13. No. 6. P. 553-558.
72. Zheng Z.M., Tang S., Tao M.//Ann. N.Y. Acad. Sci. 2005. V. 1058. P. 105-118.
73. ter Brake O., Berkhout B.//J. Gene Med. 2007. V. 9. No. 9. P. 743-750.
74. Samson M., Libert F., Doranz B.J., Rucker J., Liesnard C., Farber C.M., Saragosti S., Lapoumeroulie C., Cognaux J., Forceille C., et al.//Nature. 1996. V. 382. No. 6593. P. 722-725.
75. Anderson J., Akkina R.//Gene Ther. 2007. V. 14. No. 17. P. 1287-1297.
76. Qin X.F., An D.S., Chen I.S., Baltimore D.//Proc. Natl. Acad. Sci. USA. 2003. V. 100. No. 1. P. 183-188.
77. Lee M.T., Coburn G.A., McClure M.O., Cullen B.R.//J. Virol. 2003. V. 77. No. 22. P. 11964-11972.
78. Butticaz C., CiuffiA., Muñoz M., Thomas J., Bridge A., Pebernard S., Iggo R., Meylan P., Telenti A.//Antivir. Ther. 2003. V. 8. No. 5. P. 373-377.
79. Brass A.L., Dykxhoorn D.M., Benita Y., Yan N., Engelman A., Xavier R.J., Lieberman J., Elledge S.J.//Science. 2008. V. 319. No. 5865. P. 921-926.
80. Anderson J., Akkina R.//Retrovirology. 2005. V. 2. P. 53.
81. Banerjea A., Li M.J., Bauer G., Remling L., Lee N.S., Rossi J., Akkina R.//Mol. Ther. 2003. V. 8. No. 1. P. 62-71.
82. An D.S., Donahue R.E., Kamata M., Poon B., Metzger M., Mao S.H., Bonifacino A., Krouse A.E., Darlix J.L., Baltimore D., et al.//Proc. Natl. Acad. Sci. USA. 2007. V. 104. No. 32. P. 13110-13115.
83. Li M.J., Kim J., Li S., Zaia J., Yee J.K., Anderson J., Akkina R., Rossi J.J.//Mol. Ther. 2005. V. 12. No. 5. P. 900-909.
84. Tiemann K., Rossi J.J.//EMBO Mol. Med. 2009. V. 1. No. 3. P. 142-151.
85. Anderson J., Li M.J., Palmer B., Remling L., Li S., Yam P., Yee J.K., Rossi J., Zaia J., Akkina R.//Mol. Ther. 2007. V. 15. No. 6. P. 1182-1188.
86. Senzer N., Barve M., Kuhn J., Melnyk A., Beitsch P., Lazar M., Lifshitz S., Magee M., Oh J., Mill S.W., et al.//Mol. Ther. 2012. V. 20. No. 3. P. 679-686.
87. Zhang B., Pan X., Cobb G.P., Anderson T.A.//Dev. Biol. 2007. V. 302. No. 1. P. 1-12.
88. Li C., Feng Y., Coukos G., Zhang L.//AAPS J. 2009. V. 11. No. 4. P. 747-757.
89. Yu F., Yao H., Zhu P., Zhang X., Pan Q., Gong C., Huang Y., Hu X., Su F., Lieberman J., et al.//Cell. 2007. V. 131. No. 6. P. 1109-1123.
90. Cimmino A., Calin G.A., Fabbri M., Iorio M.V., Ferracin M., Shimizu M., Wojcik S.E., Aqeilan R.I., Zupo S., Dono M., et al.//Proc. Natl. Acad. Sci. USA. 2005. V. 102. No. 39. P. 13944-13949.
91. Kota J., Chivukula R.R., O'Donnell K.A., Wentzel E.A., Montgomery C.L., Hwang H.W., Chang T.C., Vivekanandan P., Torbenson M., Clark K.R., et al.//Cell. 2009. V. 137. No. 6. P. 1005-1017.
92. Kumar M.S., Erkeland S.J., Pester R.E., Chen C.Y., Ebert M.S., Sharp P.A., Jacks T.//Proc. Natl. Acad. Sci. USA. 2008. V. 105. No. 10. P. 3903-3908.
93. DiGiusto D.L., Krishnan A., Li L., Li H., Li S., Rao A., Mi S., Yam P., Stinson S., Kalos M., et al.//Sci. Transl. Med. 2010. V. 2. No. 36. P. 36-43.
94. Yoshino S., Hara T., Weng J.S., Takahashi Y., Seiki M., Sakamoto T.//PLoS One. 2012. V. 7. No. 4. P. 35590.
95. Palchaudhuri R., Hergenrother P.J.//ACS Chem. Biol. 2011. V. 6. No. 1. P. 21-33.
96. Mitkevich V.A., Petrushanko I.Y., Spirin P.V., Fedorova T.V., Kretova O.V., Tchurikov N.A., Prassolov V.S., Ilinskaya O.N., Makarov A.A.//Cell Cycle. 2011. V. 10. No. 23. P. 4090-4097.