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Volumn 23, Issue 6, 2013, Pages 340-354

Unmasking the information encoded as structural motifs of viral RNA genomes: A potential antiviral target

Author keywords

[No Author keywords available]

Indexed keywords

ANTISENSE OLIGONUCLEOTIDE; ANTIVIRUS AGENT; APTAMER; BENZIMIDAZOLE DERIVATIVE; GENOMIC RNA; INITIATION FACTOR 2; INITIATION FACTOR 3; INITIATION FACTOR 4A; INITIATION FACTOR 4B; INITIATION FACTOR 4G; MACROGOL; PAROMOMYCIN; PEPTIDE VACCINE; RNA INDUCED SILENCING COMPLEX; SMALL INTERFERING RNA; SPACER DNA; SYNTHETIC PEPTIDE; TRANSFER RNA; VIRUS RNA;

EID: 84887155360     PISSN: 10529276     EISSN: 10991654     Source Type: Journal    
DOI: 10.1002/rmv.1756     Document Type: Review
Times cited : (18)

References (153)
  • 1
    • 0027768233 scopus 로고
    • RNA based evolutionary optimization
    • Schuster P. RNA based evolutionary optimization. Orig Life Evol Biosph 1993; 23: 373-391.
    • (1993) Orig Life Evol Biosph , vol.23 , pp. 373-391
    • Schuster, P.1
  • 2
    • 0037108885 scopus 로고    scopus 로고
    • Error catastrophe and antiviral strategy
    • DOI: 10.1073/pnas.212514799
    • Eigen M. Error catastrophe and antiviral strategy. Proceedings of the National academy of Sciences of the USA 2002; 99: 13374-13376. DOI: 10.1073/pnas.212514799
    • (2002) Proceedings of the National academy of Sciences of the USA , vol.99 , pp. 13374-13376
    • Eigen, M.1
  • 3
    • 0033567123 scopus 로고    scopus 로고
    • Viral RNA and evolved mutational robustness
    • DOI: 10.1002/(SICI)1097-010X(19990815)285:2<119::AID-JEZ4>3.0.CO;2-D
    • Wagner A, Stadler PF. Viral RNA and evolved mutational robustness. Journal of Exposure Zoological 1999; 285: 119-127. DOI: 10.1002/(SICI)1097-010X(19990815)285:2<119::AID-JEZ4>3.0.CO;2-D
    • (1999) Journal of Exposure Zoological , vol.285 , pp. 119-127
    • Wagner, A.1    Stadler, P.F.2
  • 4
    • 0036333636 scopus 로고    scopus 로고
    • Viral RNA mutations are region specific and increased by ribavirin in a full-length hepatitis C virus replication system
    • Contreras AM, Hiasa Y, He W, et al. Viral RNA mutations are region specific and increased by ribavirin in a full-length hepatitis C virus replication system. Journal of Virology 2002; 76: 8505-8517.
    • (2002) Journal of Virology , vol.76 , pp. 8505-8517
    • Contreras, A.M.1    Hiasa, Y.2    He, W.3
  • 5
    • 78649872307 scopus 로고    scopus 로고
    • Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV
    • DOI: S0219720010005087
    • Churkin A, Cohen M, Shemer-Avni Y, et al. Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCV. Journal of Bioinformatics and Computational Biology 2010; 8: 1013-1026. DOI: S0219720010005087
    • (2010) Journal of Bioinformatics and Computational Biology , vol.8 , pp. 1013-1026
    • Churkin, A.1    Cohen, M.2    Shemer-Avni, Y.3
  • 6
    • 80051989609 scopus 로고    scopus 로고
    • Understanding the transcriptome through RNA structure
    • DOI: 10.1038/nrg3049
    • Wan Y, Kertesz M, Spitale RC, et al. Understanding the transcriptome through RNA structure. Nature Reviews Genetics 2011; 12: 641-655. DOI: 10.1038/nrg3049
    • (2011) Nature Reviews Genetics , vol.12 , pp. 641-655
    • Wan, Y.1    Kertesz, M.2    Spitale, R.C.3
  • 7
    • 71849107774 scopus 로고    scopus 로고
    • cis-Acting RNA elements in human and animal plus-strand RNA viruses
    • DOI: 10.1016/j.bbagrm.2009.09.007
    • Liu Y, Wimmer E, Paul AV. cis-Acting RNA elements in human and animal plus-strand RNA viruses. Biochemical et Biophysical Acta 2009; 1789: 495-517. DOI: 10.1016/j.bbagrm.2009.09.007
    • (2009) Biochemical et Biophysical Acta , vol.1789 , pp. 495-517
    • Liu, Y.1    Wimmer, E.2    Paul, A.V.3
  • 8
    • 33744507185 scopus 로고    scopus 로고
    • From structure to function: new insights into hepatitis C virus RNA replication
    • DOI: R500026200
    • Appel N, Schaller T, Penin F, et al. From structure to function: new insights into hepatitis C virus RNA replication. Journal Biological Chemistry 2006; 281: 9833-9836. DOI: R500026200
    • (2006) Journal Biological Chemistry , vol.281 , pp. 9833-9836
    • Appel, N.1    Schaller, T.2    Penin, F.3
  • 9
    • 59749086877 scopus 로고    scopus 로고
    • Relevance of RNA structure for the activity of picornavirus IRES elements
    • DOI: 10.1016/j.virusres.2008.07.009
    • Fernández-Miragall O, López de Quinto S, Martínez-Salas E. Relevance of RNA structure for the activity of picornavirus IRES elements. Virus Research 2009; 139: 172-182. DOI: 10.1016/j.virusres.2008.07.009
    • (2009) Virus Research , vol.139 , pp. 172-182
    • Fernández-Miragall, O.1    López de Quinto, S.2    Martínez-Salas, E.3
  • 10
    • 67349281962 scopus 로고    scopus 로고
    • RNA structure: new messages in translation, replication and disease. Workshop on the role of RNA structures in the translation of viral and cellular RNAs
    • DOI: 10.1038/embor.2009.56
    • Roberts L, Holcik M. RNA structure: new messages in translation, replication and disease. Workshop on the role of RNA structures in the translation of viral and cellular RNAs. EMBO Reports 2009; 10: 449-453. DOI: 10.1038/embor.2009.56
    • (2009) EMBO Reports , vol.10 , pp. 449-453
    • Roberts, L.1    Holcik, M.2
  • 11
    • 81755166206 scopus 로고    scopus 로고
    • Animal virus schemes for translation dominance
    • DOI: 10.1016/j.coviro.2011.10.009.
    • Reineke LC, Lloyd RE. Animal virus schemes for translation dominance. Current Opinion in Virology 2011; 1: 363-372. DOI: 10.1016/j.coviro.2011.10.009.
    • (2011) Current Opinion in Virology , vol.1 , pp. 363-372
    • Reineke, L.C.1    Lloyd, R.E.2
  • 12
    • 0002855593 scopus 로고
    • cis-Acting genomic elements and trans-acting proteins involved in the assembly of RNA viruses
    • Schlesinger S, Makino S, Linial ML. cis-Acting genomic elements and trans-acting proteins involved in the assembly of RNA viruses. Seminars in Virology 1994; 5: 39-49.
    • (1994) Seminars in Virology , vol.5 , pp. 39-49
    • Schlesinger, S.1    Makino, S.2    Linial, M.L.3
  • 13
    • 2442705213 scopus 로고    scopus 로고
    • Conserved RNA secondary structures in Flaviviridae genomes
    • Thurner C, Witwer C, Hofacker IL, et al. Conserved RNA secondary structures in Flaviviridae genomes. Journal of General Virology 2004; 85: 1113-1124.
    • (2004) Journal of General Virology , vol.85 , pp. 1113-1124
    • Thurner, C.1    Witwer, C.2    Hofacker, I.L.3
  • 14
    • 59749102174 scopus 로고    scopus 로고
    • Functional analysis of structural motifs in dicistroviruses
    • DOI: 10.1016/j.virusres.2008.06.006
    • Nakashima N, Uchiumi T. Functional analysis of structural motifs in dicistroviruses. Virus Research 2009; 139: 137-147. DOI: 10.1016/j.virusres.2008.06.006
    • (2009) Virus Research , vol.139 , pp. 137-147
    • Nakashima, N.1    Uchiumi, T.2
  • 15
    • 59749098739 scopus 로고    scopus 로고
    • The structure-function relationship of the enterovirus 3'-UTR
    • DOI: 10.1016/j.virusres.2008.07.014
    • Zoll J, Heus HA, van Kuppeveld FJ, et al. The structure-function relationship of the enterovirus 3'-UTR. Virus Research 2009; 139: 209-216. DOI: 10.1016/j.virusres.2008.07.014
    • (2009) Virus Research , vol.139 , pp. 209-216
    • Zoll, J.1    Heus, H.A.2    van Kuppeveld, F.J.3
  • 16
    • 66849089596 scopus 로고    scopus 로고
    • Toward a structural understanding of IRES RNA function
    • DOI: 10.1016/j.sbi.2009.03.005
    • Filbin ME, Kieft JS. Toward a structural understanding of IRES RNA function. Current Opinion in Structural Biology 2009; 19: 267-276. DOI: 10.1016/j.sbi.2009.03.005
    • (2009) Current Opinion in Structural Biology , vol.19 , pp. 267-276
    • Filbin, M.E.1    Kieft, J.S.2
  • 17
    • 0037073485 scopus 로고    scopus 로고
    • Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus
    • DOI: 10.1016/s0022-2836(02)01099-9
    • Jan E, Sarnow P. Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus. Journal of Molecular Biology 2002; 324: 889-902. DOI: 10.1016/s0022-2836(02)01099-9
    • (2002) Journal of Molecular Biology , vol.324 , pp. 889-902
    • Jan, E.1    Sarnow, P.2
  • 18
    • 0034682720 scopus 로고    scopus 로고
    • Initiation of protein synthesis from the A site of the ribosome
    • DOI: 10.1016/S0092-8674(00)00055-6
    • Wilson JE, Pestova TV, Hellen CU, et al. Initiation of protein synthesis from the A site of the ribosome. Cell 2000; 102: 511-520. DOI: 10.1016/S0092-8674(00)00055-6
    • (2000) Cell , vol.102 , pp. 511-520
    • Wilson, J.E.1    Pestova, T.V.2    Hellen, C.U.3
  • 19
    • 0035259873 scopus 로고    scopus 로고
    • A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation
    • Kanamori Y, Nakashima N. A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation. RNA 2001; 7: 266-274.
    • (2001) RNA , vol.7 , pp. 266-274
    • Kanamori, Y.1    Nakashima, N.2
  • 20
    • 13944276301 scopus 로고    scopus 로고
    • A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs
    • DOI: 10.1261/rna.7184705
    • Costantino D, Kieft JS. A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs. RNA 2005; 11: 332-343. DOI: 10.1261/rna.7184705
    • (2005) RNA , vol.11 , pp. 332-343
    • Costantino, D.1    Kieft, J.S.2
  • 21
    • 33845335508 scopus 로고    scopus 로고
    • Structural basis for ribosome recruitment and manipulation by a viral IRES RNA
    • DOI: 10.1126/science.1133281
    • Pfingsten JS, Costantino DA, Kieft JS. Structural basis for ribosome recruitment and manipulation by a viral IRES RNA. Science 2006; 314: 1450-1454. DOI: 10.1126/science.1133281
    • (2006) Science , vol.314 , pp. 1450-1454
    • Pfingsten, J.S.1    Costantino, D.A.2    Kieft, J.S.3
  • 22
    • 34247185278 scopus 로고    scopus 로고
    • Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site
    • DOI: 10.1074/jbc.M610887200
    • Yamamoto H, Nakashima N, Ikeda Y, et al. Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site. Journal of Biological Chemistry 2007; 282: 7770-7776. DOI: 10.1074/jbc.M610887200
    • (2007) Journal of Biological Chemistry , vol.282 , pp. 7770-7776
    • Yamamoto, H.1    Nakashima, N.2    Ikeda, Y.3
  • 24
    • 0028844509 scopus 로고
    • Unique features of internal initiation of hepatitis C virus RNA translation
    • Reynolds JE, Kaminski A, Kettinen HJ, et al. Unique features of internal initiation of hepatitis C virus RNA translation. EMBO Journal 1995; 14: 6010-6020.
    • (1995) EMBO Journal , vol.14 , pp. 6010-6020
    • Reynolds, J.E.1    Kaminski, A.2    Kettinen, H.J.3
  • 25
    • 0034469927 scopus 로고    scopus 로고
    • Core protein-coding sequence, but not core protein, modulates the efficiency of cap-independent translation directed by the internal ribosome entry site of hepatitis C virus
    • Wang TH, Rijnbrand RC, Lemon SM. Core protein-coding sequence, but not core protein, modulates the efficiency of cap-independent translation directed by the internal ribosome entry site of hepatitis C virus. Journal of Virology 2000; 74: 11, 347-11, 358.
    • (2000) Journal of Virology , vol.74 , pp. 11347-11358
    • Wang, T.H.1    Rijnbrand, R.C.2    Lemon, S.M.3
  • 26
    • 0033600934 scopus 로고    scopus 로고
    • The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold
    • Kieft JS, Zhou K, Jubin R, et al. The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold. Journal of Molecular Biology 1999; 292: 513-529.
    • (1999) Journal of Molecular Biology , vol.292 , pp. 513-529
    • Kieft, J.S.1    Zhou, K.2    Jubin, R.3
  • 27
    • 0029949695 scopus 로고    scopus 로고
    • Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA
    • Honda M, Brown EA, Lemon SM. Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA. RNA 1996; 2: 955-968.
    • (1996) RNA , vol.2 , pp. 955-968
    • Honda, M.1    Brown, E.A.2    Lemon, S.M.3
  • 28
    • 77955097370 scopus 로고    scopus 로고
    • Waghray S, Doudna JA. The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit
    • DOI: 10.1261/rna.2197210
    • Berry KE, Waghray S, Doudna JA. Waghray S, Doudna JA. The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit. RNA 2010; 16: 1559-1569. DOI: 10.1261/rna.2197210
    • (2010) RNA , vol.16 , pp. 1559-1569
    • Berry, K.E.1    Waghray, S.2    Doudna, J.A.3
  • 29
    • 0035831269 scopus 로고    scopus 로고
    • Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit
    • Spahn CM, Kieft JS, Grassucci RA, et al. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit. Science 2001; 291: 1959-1962.
    • (2001) Science , vol.291 , pp. 1959-1962
    • Spahn, C.M.1    Kieft, J.S.2    Grassucci, R.A.3
  • 30
    • 33845623845 scopus 로고    scopus 로고
    • Structural and mechanistic insights into hepatitis C viral translation initiation
    • Fraser CS, Doudna JA. Structural and mechanistic insights into hepatitis C viral translation initiation. Nature Reviews Microbiology 2007; 5: 29-38.
    • (2007) Nature Reviews Microbiology , vol.5 , pp. 29-38
    • Fraser, C.S.1    Doudna, J.A.2
  • 31
    • 49449093122 scopus 로고    scopus 로고
    • Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2
    • Terenin IM, Dmitriev SE, Andreev DE, et al. Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2. Nature Structural and Molecular Biology 2008; 15: 836-841.
    • (2008) Nature Structural and Molecular Biology , vol.15 , pp. 836-841
    • Terenin, I.M.1    Dmitriev, S.E.2    Andreev, D.E.3
  • 32
    • 10744229009 scopus 로고    scopus 로고
    • Structural organization of a viral IRES depends on the integrity of the GNRA motif
    • Fernández-Miragall O, Martínez-Salas E. Structural organization of a viral IRES depends on the integrity of the GNRA motif. RNA 2003; 9: 1333-1344.
    • (2003) RNA , vol.9 , pp. 1333-1344
    • Fernández-Miragall, O.1    Martínez-Salas, E.2
  • 33
    • 36248972579 scopus 로고    scopus 로고
    • In vivo footprint of a picornavirus internal ribosome entry site reveals differences in accessibility to specific RNA structural elements
    • Fernández-Miragall O, Martínez-Salas E. In vivo footprint of a picornavirus internal ribosome entry site reveals differences in accessibility to specific RNA structural elements. Journal of General Virology 2007; 88: 3053-3062.
    • (2007) Journal of General Virology , vol.88 , pp. 3053-3062
    • Fernández-Miragall, O.1    Martínez-Salas, E.2
  • 34
    • 80455168337 scopus 로고    scopus 로고
    • Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation
    • DOI: 10.1093/nar/gkr560
    • Fernández N, Fernández-Miragall O, Ramajo J, et al. Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation. Nucleic Acids Research 2011; 39: 8572-8585. DOI: 10.1093/nar/gkr560
    • (2011) Nucleic Acids Research , vol.39 , pp. 8572-8585
    • Fernández, N.1    Fernández-Miragall, O.2    Ramajo, J.3
  • 35
    • 78650261546 scopus 로고    scopus 로고
    • Structural analysis provides insights into the modular organization of picornavirus IRES
    • DOI: S0042-6822(10)00649-5
    • Fernández N, García-Sacristán A, Ramajo J, et al. Structural analysis provides insights into the modular organization of picornavirus IRES. Virology 2011; 409: 251-261. DOI: S0042-6822(10)00649-5
    • (2011) Virology , vol.409 , pp. 251-261
    • Fernández, N.1    García-Sacristán, A.2    Ramajo, J.3
  • 36
    • 0033623486 scopus 로고    scopus 로고
    • Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo
    • López de Quinto S, Martínez-Salas E. Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo. RNA 2000; 6: 1380-1392.
    • (2000) RNA , vol.6 , pp. 1380-1392
    • López de Quinto, S.1    Martínez-Salas, E.2
  • 37
    • 0034852292 scopus 로고    scopus 로고
    • IRES interaction with translation initiation factors: functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII
    • López de Quinto S, Lafuente E, Martínez-Salas E. IRES interaction with translation initiation factors: functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII. RNA 2001; 7: 1213-1226.
    • (2001) RNA , vol.7 , pp. 1213-1226
    • López de Quinto, S.1    Lafuente, E.2    Martínez-Salas, E.3
  • 38
    • 0025668193 scopus 로고
    • Cap-independent translation of picornavirus RNAs: structure and function of the internal ribosomal entry site
    • Jang SK, Pestova TV, Hellen CU, et al. Cap-independent translation of picornavirus RNAs: structure and function of the internal ribosomal entry site. Enzyme 1990; 44: 292-309.
    • (1990) Enzyme , vol.44 , pp. 292-309
    • Jang, S.K.1    Pestova, T.V.2    Hellen, C.U.3
  • 39
    • 0034663980 scopus 로고    scopus 로고
    • A cell cycle-dependent protein serves as a template-specific translation initiation factor
    • Pilipenko EV, Pestova TV, Kolupaeva VG, et al. A cell cycle-dependent protein serves as a template-specific translation initiation factor. Genes & Development 2000; 14: 2028-2045.
    • (2000) Genes & Development , vol.14 , pp. 2028-2045
    • Pilipenko, E.V.1    Pestova, T.V.2    Kolupaeva, V.G.3
  • 40
    • 0037219005 scopus 로고    scopus 로고
    • Eukaryotic initiation factors 4G and 4A mediate conformational changes downstream of the initiation codon of the encephalomyocarditis virus internal ribosomal entry site
    • Kolupaeva VG, Lomakin IB, Pestova TV, et al. Eukaryotic initiation factors 4G and 4A mediate conformational changes downstream of the initiation codon of the encephalomyocarditis virus internal ribosomal entry site. Molecular and Cellular Biology 2003; 23: 687-698.
    • (2003) Molecular and Cellular Biology , vol.23 , pp. 687-698
    • Kolupaeva, V.G.1    Lomakin, I.B.2    Pestova, T.V.3
  • 41
    • 28344442948 scopus 로고    scopus 로고
    • Evidence for an RNA chaperone function of polypyrimidine tract-binding protein in picornavirus translation
    • DOI: 10.1261/rna.7430405
    • Song Y, Tzima E, Ochs K, et al. Evidence for an RNA chaperone function of polypyrimidine tract-binding protein in picornavirus translation. RNA 2005; 11: 1809-1824. DOI: 10.1261/rna.7430405
    • (2005) RNA , vol.11 , pp. 1809-1824
    • Song, Y.1    Tzima, E.2    Ochs, K.3
  • 42
    • 0037378576 scopus 로고    scopus 로고
    • The leader of human immunodeficiency virus type 1 genomic RNA harbors an internal ribosome entry segment that is active during the G2/M phase of the cell cycle
    • Brasey A, Lopez-Lastra M, Ohlmann T, et al. The leader of human immunodeficiency virus type 1 genomic RNA harbors an internal ribosome entry segment that is active during the G2/M phase of the cell cycle. Journal of Virology 2003; 77: 3939-3949.
    • (2003) Journal of Virology , vol.77 , pp. 3939-3949
    • Brasey, A.1    Lopez-Lastra, M.2    Ohlmann, T.3
  • 43
    • 41149153280 scopus 로고    scopus 로고
    • A dormant internal ribosome entry site controls translation of feline immunodeficiency virus
    • DOI: 10.1128/JVI.02038-07
    • Camerini V, Decimo D, Balvay L, et al. A dormant internal ribosome entry site controls translation of feline immunodeficiency virus. Journal of Virology 2008; 82: 3574-3583. DOI: 10.1128/JVI.02038-07
    • (2008) Journal of Virology , vol.82 , pp. 3574-3583
    • Camerini, V.1    Decimo, D.2    Balvay, L.3
  • 44
    • 0034749543 scopus 로고    scopus 로고
    • The human immunodeficiency virus type 1 gag gene encodes an internal ribosome entry site
    • DOI: 10.1128/JVI.75.1.181-191.2001
    • Buck CB, Shen X, Egan MA, et al. The human immunodeficiency virus type 1 gag gene encodes an internal ribosome entry site. Journal of Virology 2001; 75: 181-191. DOI: 10.1128/JVI.75.1.181-191.2001
    • (2001) Journal of Virology , vol.75 , pp. 181-191
    • Buck, C.B.1    Shen, X.2    Egan, M.A.3
  • 45
    • 21744452846 scopus 로고    scopus 로고
    • The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation
    • DOI: 10.1021/bi0502588
    • Abbink TE, Ooms M, Haasnoot PC, et al. The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation. Biochemistry 2005; 44: 9058-9066. DOI: 10.1021/bi0502588
    • (2005) Biochemistry , vol.44 , pp. 9058-9066
    • Abbink, T.E.1    Ooms, M.2    Haasnoot, P.C.3
  • 46
    • 0038176532 scopus 로고    scopus 로고
    • A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon
    • DOI: 10.1074/jbc.M210291200
    • Abbink TE, Berkhout B. A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon. Journal of Biological Chemistry 2003; 278: 11, 601-11, 611. DOI: 10.1074/jbc.M210291200
    • (2003) Journal of Biological Chemistry , vol.278 , pp. 11601-11611
    • Abbink, T.E.1    Berkhout, B.2
  • 47
    • 33646797101 scopus 로고    scopus 로고
    • End-to-end communication in the modulation of translation by mammalian RNA viruses
    • Edgil D, Harris E. End-to-end communication in the modulation of translation by mammalian RNA viruses. Virus Research 2006; 119: 43-51.
    • (2006) Virus Research , vol.119 , pp. 43-51
    • Edgil, D.1    Harris, E.2
  • 48
    • 0026572608 scopus 로고
    • Towards identification of cis-acting elements involved in the replication of enterovirus and rhinovirus RNAs: a proposal for the existence of tRNA-like terminal structures
    • Pilipenko EV, Maslova SV, Sinyakov AN, et al. Towards identification of cis-acting elements involved in the replication of enterovirus and rhinovirus RNAs: a proposal for the existence of tRNA-like terminal structures. Nucleic Acids Research 1992; 20: 1739-1745.
    • (1992) Nucleic Acids Research , vol.20 , pp. 1739-1745
    • Pilipenko, E.V.1    Maslova, S.V.2    Sinyakov, A.N.3
  • 49
    • 0027133067 scopus 로고
    • Genetics of poliovirus
    • DOI: 10.1146/annurev.ge.27.120193.002033
    • Wimmer E, Hellen CU, Cao X. Genetics of poliovirus. Annual Review of Genetics 1993; 27: 353-436. DOI: 10.1146/annurev.ge.27.120193.002033
    • (1993) Annual Review of Genetics , vol.27 , pp. 353-436
    • Wimmer, E.1    Hellen, C.U.2    Cao, X.3
  • 50
    • 0027229229 scopus 로고
    • Biochemical and genetic evidence for a pseudoknot structure at the 3' terminus of the poliovirus RNA genome and its role in viral RNA amplification
    • Jacobson SJ, Konings DA, Sarnow P. Biochemical and genetic evidence for a pseudoknot structure at the 3' terminus of the poliovirus RNA genome and its role in viral RNA amplification. Journal of Virology 1993; 67: 2961-2971.
    • (1993) Journal of Virology , vol.67 , pp. 2961-2971
    • Jacobson, S.J.1    Konings, D.A.2    Sarnow, P.3
  • 51
    • 0033555905 scopus 로고    scopus 로고
    • Structural requirements of the higher order RNA kissing element in the enteroviral 3'UTR
    • DOI: 10.1093/nar/27.2.485
    • Wang J, Bakkers JM, Galama JM, et al. Structural requirements of the higher order RNA kissing element in the enteroviral 3'UTR. Nucleic Acids Research 1999; 27: 485-490. DOI: 10.1093/nar/27.2.485
    • (1999) Nucleic Acids Research , vol.27 , pp. 485-490
    • Wang, J.1    Bakkers, J.M.2    Galama, J.M.3
  • 52
    • 0033942925 scopus 로고    scopus 로고
    • Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR
    • Melchers WJ, Bakkers JM, Bruins Slot HJ, et al. Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR. RNA 2000; 6: 976-987.
    • (2000) RNA , vol.6 , pp. 976-987
    • Melchers, W.J.1    Bakkers, J.M.2    Bruins Slot, H.J.3
  • 53
    • 33644608727 scopus 로고    scopus 로고
    • Structural and functional integrity of the coxsackievirus B3 oriR: spacing between coaxial RNA helices
    • DOI: 10.1099/vir.0.81558-0
    • van Ooij MJ, Glaudemans DH, Heus HA, et al. Structural and functional integrity of the coxsackievirus B3 oriR: spacing between coaxial RNA helices. Journal of General Virology 2006; 87: 689-695. DOI: 10.1099/vir.0.81558-0
    • (2006) Journal of General Virology , vol.87 , pp. 689-695
    • van Ooij, M.J.1    Glaudemans, D.H.2    Heus, H.A.3
  • 54
    • 64049103834 scopus 로고    scopus 로고
    • Attenuated foot-and-mouth disease virus RNA carrying a deletion in the 3' noncoding region can elicit immunity in swine
    • DOI: 10.1128/JVI.01836-08
    • Rodriguez Pulido M, Sobrino F, Borrego B, et al. Attenuated foot-and-mouth disease virus RNA carrying a deletion in the 3' noncoding region can elicit immunity in swine. Journal of Virology 2009; 83: 3475-3485. DOI: 10.1128/JVI.01836-08
    • (2009) Journal of Virology , vol.83 , pp. 3475-3485
    • Rodriguez Pulido, M.1    Sobrino, F.2    Borrego, B.3
  • 55
    • 33749069918 scopus 로고    scopus 로고
    • The 3' end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5' end region
    • Serrano P, Pulido MR, Saiz M, et al. The 3' end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5' end region. Journal of General Virology 2006; 87: 3013-3022.
    • (2006) Journal of General Virology , vol.87 , pp. 3013-3022
    • Serrano, P.1    Pulido, M.R.2    Saiz, M.3
  • 56
    • 0029927642 scopus 로고    scopus 로고
    • Structure of the 3' terminus of the hepatitis C virus genome
    • Tanaka T, Kato N, Cho MJ, et al. Structure of the 3' terminus of the hepatitis C virus genome. Journal of Virology 1996; 70: 3307-3312.
    • (1996) Journal of Virology , vol.70 , pp. 3307-3312
    • Tanaka, T.1    Kato, N.2    Cho, M.J.3
  • 57
    • 0030823630 scopus 로고    scopus 로고
    • Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA
    • Blight KJ, Rice CM. Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA. Journal of Virology 1997; 71: 7345-7352.
    • (1997) Journal of Virology , vol.71 , pp. 7345-7352
    • Blight, K.J.1    Rice, C.M.2
  • 58
    • 0029938477 scopus 로고    scopus 로고
    • Rice CM. Identification of a highly conserved sequence element at the 3' terminus of hepatitis C virus genome RNA
    • Kolykhalov AA, Feinstone SM, Rice CM. Rice CM. Identification of a highly conserved sequence element at the 3' terminus of hepatitis C virus genome RNA. Journal of Virology 1996; 70: 3363-3371.
    • (1996) Journal of Virology , vol.70 , pp. 3363-3371
    • Kolykhalov, A.A.1    Feinstone, S.M.2    Rice, C.M.3
  • 60
    • 0033920304 scopus 로고    scopus 로고
    • Hepatitis C virus-encoded enzymatic activities and conserved RNA elements in the 3' nontranslated region are essential for virus replication in vivo
    • Kolykhalov AA, Mihalik K, Feinstone SM, et al. Hepatitis C virus-encoded enzymatic activities and conserved RNA elements in the 3' nontranslated region are essential for virus replication in vivo. Journal of Virology 2000; 74: 2046-2051.
    • (2000) Journal of Virology , vol.74 , pp. 2046-2051
    • Kolykhalov, A.A.1    Mihalik, K.2    Feinstone, S.M.3
  • 61
    • 0036094885 scopus 로고    scopus 로고
    • Genetic analysis of sequences in the 3' nontranslated region of hepatitis C virus that are important for RNA replication
    • Friebe P, Bartenschlager R. Genetic analysis of sequences in the 3' nontranslated region of hepatitis C virus that are important for RNA replication. Journal of Virology 2002; 76: 5326-5338.
    • (2002) Journal of Virology , vol.76 , pp. 5326-5338
    • Friebe, P.1    Bartenschlager, R.2
  • 62
    • 0037372808 scopus 로고    scopus 로고
    • Structure-function analysis of the 3' stem-loop of hepatitis C virus genomic RNA and its role in viral RNA replication
    • Yi M, Lemon SM. Structure-function analysis of the 3' stem-loop of hepatitis C virus genomic RNA and its role in viral RNA replication. RNA 2003; 9: 331-345.
    • (2003) RNA , vol.9 , pp. 331-345
    • Yi, M.1    Lemon, S.M.2
  • 63
    • 0037332361 scopus 로고    scopus 로고
    • 3' nontranslated RNA signals required for replication of hepatitis C virus RNA
    • Yi M, Lemon SM. 3' nontranslated RNA signals required for replication of hepatitis C virus RNA. Journal of Virology 2003; 77: 3557-3568.
    • (2003) Journal of Virology , vol.77 , pp. 3557-3568
    • Yi, M.1    Lemon, S.M.2
  • 64
    • 37349012884 scopus 로고    scopus 로고
    • 3' RNA elements in hepatitis C virus replication: kissing partners and long poly(U)
    • DOI: JVI.01796-07[pii]10.1128/JVI.01796-07
    • You S, Rice CM. 3' RNA elements in hepatitis C virus replication: kissing partners and long poly(U). Journal of Virology 2008; 82: 184-195. DOI: JVI.01796-07[pii]10.1128/JVI.01796-07
    • (2008) Journal of Virology , vol.82 , pp. 184-195
    • You, S.1    Rice, C.M.2
  • 65
    • 0035138086 scopus 로고    scopus 로고
    • Specific interaction of hepatitis C virus protease/helicase NS3 with the 3'-terminal sequences of viral positive- and negative-strand RNA
    • Banerjee R, Dasgupta A. Specific interaction of hepatitis C virus protease/helicase NS3 with the 3'-terminal sequences of viral positive- and negative-strand RNA. Journal of Virology 2001; 75: 1708-1721.
    • (2001) Journal of Virology , vol.75 , pp. 1708-1721
    • Banerjee, R.1    Dasgupta, A.2
  • 66
    • 0030812847 scopus 로고    scopus 로고
    • Determination of the secondary structure of and cellular protein binding to the 3'-untranslated region of the hepatitis C virus RNA genome
    • Ito T, Lai MM. Determination of the secondary structure of and cellular protein binding to the 3'-untranslated region of the hepatitis C virus RNA genome. Journal of Virology 1997; 71: 8698-8706.
    • (1997) Journal of Virology , vol.71 , pp. 8698-8706
    • Ito, T.1    Lai, M.M.2
  • 67
    • 0033616526 scopus 로고    scopus 로고
    • Cellular proteins bind to the poly(U) tract of the 3' untranslated region of hepatitis C virus RNA genome
    • Luo G. Cellular proteins bind to the poly(U) tract of the 3' untranslated region of hepatitis C virus RNA genome. Virology 1999; 256: 105-118.
    • (1999) Virology , vol.256 , pp. 105-118
    • Luo, G.1
  • 68
    • 1642616993 scopus 로고    scopus 로고
    • The La protein from human liver cells interacts specifically with the U-rich region in the hepatitis C virus 3' untranslated region
    • Spangberg K, Goobar-Larsson L, Wahren-Herlenius M, et al. The La protein from human liver cells interacts specifically with the U-rich region in the hepatitis C virus 3' untranslated region. Journal of Human Virology 1999; 2: 296-307.
    • (1999) Journal of Human Virology , vol.2 , pp. 296-307
    • Spangberg, K.1    Goobar-Larsson, L.2    Wahren-Herlenius, M.3
  • 69
    • 0035152913 scopus 로고    scopus 로고
    • Hepatitis C virus 3'X region interacts with human ribosomal proteins
    • Wood J, Frederickson RM, Fields S, et al. Hepatitis C virus 3'X region interacts with human ribosomal proteins. Journal of Virology 2001; 75: 1348-1358.
    • (2001) Journal of Virology , vol.75 , pp. 1348-1358
    • Wood, J.1    Frederickson, R.M.2    Fields, S.3
  • 70
    • 28844437809 scopus 로고    scopus 로고
    • The polypyrimidine tract-binding protein (PTB) is required for efficient replication of hepatitis C virus (HCV) RNA
    • Chang KS, Luo G. The polypyrimidine tract-binding protein (PTB) is required for efficient replication of hepatitis C virus (HCV) RNA. Virus Research 2006; 115: 1-8.
    • (2006) Virus Research , vol.115 , pp. 1-8
    • Chang, K.S.1    Luo, G.2
  • 71
    • 10644226734 scopus 로고    scopus 로고
    • Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication
    • Friebe P, Boudet J, Simorre JP, et al. Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication. Journal of Virology 2005; 79: 380-392.
    • (2005) Journal of Virology , vol.79 , pp. 380-392
    • Friebe, P.1    Boudet, J.2    Simorre, J.P.3
  • 72
    • 50949115626 scopus 로고    scopus 로고
    • A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B
    • Diviney S, Tuplin A, Struthers M, et al. A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. Journal of Virology 2008; 82: 9008-9022.
    • (2008) Journal of Virology , vol.82 , pp. 9008-9022
    • Diviney, S.1    Tuplin, A.2    Struthers, M.3
  • 73
    • 0022472318 scopus 로고
    • The 3'-nucleotides of flavivirus genomic RNA form a conserved secondary structure
    • Brinton MA, Fernandez AV, Dispoto JH. The 3'-nucleotides of flavivirus genomic RNA form a conserved secondary structure. Virology 1986; 153: 113-121.
    • (1986) Virology , vol.153 , pp. 113-121
    • Brinton, M.A.1    Fernandez, A.V.2    Dispoto, J.H.3
  • 74
    • 35348822495 scopus 로고    scopus 로고
    • Interaction between the cellular protein eEF1A and the 3'-terminal stem-loop of West Nile virus genomic RNA facilitates viral minus-strand RNA synthesis
    • DOI: 10.1128/JVI.00531-07
    • Davis WG, Blackwell JL, Shi PY, et al. Interaction between the cellular protein eEF1A and the 3'-terminal stem-loop of West Nile virus genomic RNA facilitates viral minus-strand RNA synthesis. Journal of Virology 2007; 81: 10, 172-10, 187. DOI: 10.1128/JVI.00531-07
    • (2007) Journal of Virology , vol.81 , pp. 10172-10187
    • Davis, W.G.1    Blackwell, J.L.2    Shi, P.Y.3
  • 75
    • 79954505991 scopus 로고    scopus 로고
    • RNA-RNA and RNA-protein interactions in coronavirus replication and transcription
    • DOI: 10.4161/rna.8.2.14991
    • Sola I, Mateos-Gomez PA, Almazan F, et al. RNA-RNA and RNA-protein interactions in coronavirus replication and transcription. RNA Biology 2011; 8: 237-248. DOI: 10.4161/rna.8.2.14991
    • (2011) RNA Biology , vol.8 , pp. 237-248
    • Sola, I.1    Mateos-Gomez, P.A.2    Almazan, F.3
  • 76
    • 0030768788 scopus 로고    scopus 로고
    • A bulged stem-loop structure in the 3' untranslated region of the genome of the coronavirus mouse hepatitis virus is essential for replication
    • Hsue B, Masters PS. A bulged stem-loop structure in the 3' untranslated region of the genome of the coronavirus mouse hepatitis virus is essential for replication. Journal of Virology 1997; 71: 7567-7578.
    • (1997) Journal of Virology , vol.71 , pp. 7567-7578
    • Hsue, B.1    Masters, P.S.2
  • 77
    • 0033927571 scopus 로고    scopus 로고
    • Masters PS. Characterization of an essential RNA secondary structure in the 3' untranslated region of the murine coronavirus genome
    • Hsue B, Hartshorne T, Masters PS. Masters PS. Characterization of an essential RNA secondary structure in the 3' untranslated region of the murine coronavirus genome. Journal of Virology 2000; 74: 6911-6921.
    • (2000) Journal of Virology , vol.74 , pp. 6911-6921
    • Hsue, B.1    Hartshorne, T.2    Masters, P.S.3
  • 78
    • 0032827591 scopus 로고    scopus 로고
    • A phylogenetically conserved hairpin-type 3' untranslated region pseudoknot functions in coronavirus RNA replication
    • Williams GD, Chang RY, Brian DA. A phylogenetically conserved hairpin-type 3' untranslated region pseudoknot functions in coronavirus RNA replication. Journal of Virology 1999; 73: 8349-8355.
    • (1999) Journal of Virology , vol.73 , pp. 8349-8355
    • Williams, G.D.1    Chang, R.Y.2    Brian, D.A.3
  • 79
    • 33846503830 scopus 로고    scopus 로고
    • A hypervariable region within the 3' cis-acting element of the murine coronavirus genome is nonessential for RNA synthesis but affects pathogenesis
    • DOI: 10.1128/JVI.00803-06
    • Goebel SJ, Miller TB, Bennett CJ, et al. A hypervariable region within the 3' cis-acting element of the murine coronavirus genome is nonessential for RNA synthesis but affects pathogenesis. Journal of Virology 2007; 81: 1274-1287. DOI: 10.1128/JVI.00803-06
    • (2007) Journal of Virology , vol.81 , pp. 1274-1287
    • Goebel, S.J.1    Miller, T.B.2    Bennett, C.J.3
  • 80
    • 0035064591 scopus 로고    scopus 로고
    • Evolutionarily conserved RNA secondary structures in coding and non-coding sequences at the 3' end of the hepatitis G virus/GB-virus C genome
    • Cuceanu NM, Tuplin A, Simmonds P. Evolutionarily conserved RNA secondary structures in coding and non-coding sequences at the 3' end of the hepatitis G virus/GB-virus C genome. Journal of General Virology 2001; 82: 713-722.
    • (2001) Journal of General Virology , vol.82 , pp. 713-722
    • Cuceanu, N.M.1    Tuplin, A.2    Simmonds, P.3
  • 81
    • 0036269759 scopus 로고    scopus 로고
    • Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus
    • Tuplin A, Wood J, Evans DJ, et al. Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus. RNA 2002; 8: 824-841.
    • (2002) RNA , vol.8 , pp. 824-841
    • Tuplin, A.1    Wood, J.2    Evans, D.J.3
  • 82
    • 43349101238 scopus 로고    scopus 로고
    • Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses
    • DOI: 10.1093/nar/gkn096
    • Simmonds P, Karakasiliotis I, Bailey D, et al. Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses. Nucleic Acids Research 2008; 36: 2530-2546. DOI: 10.1093/nar/gkn096
    • (2008) Nucleic Acids Research , vol.36 , pp. 2530-2546
    • Simmonds, P.1    Karakasiliotis, I.2    Bailey, D.3
  • 83
    • 57049152936 scopus 로고    scopus 로고
    • Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene
    • DOI: 10.1261/rna.1252608
    • Wang Q, Barr I, Guo F, et al. Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene. RNA 2008; 14: 2478-2488. DOI: 10.1261/rna.1252608
    • (2008) RNA , vol.14 , pp. 2478-2488
    • Wang, Q.1    Barr, I.2    Guo, F.3
  • 84
    • 77249124868 scopus 로고    scopus 로고
    • Phylogenetic prediction of cis-acting elements: a CRE-like sequence in Norovirus genome?
    • DOI: 10.1186/1756-0500-2-176
    • Victoria M, Colina R, Miagostovich MP, et al. Phylogenetic prediction of cis-acting elements: a CRE-like sequence in Norovirus genome?. BMC Research Notes 2009; 2: 176. DOI: 10.1186/1756-0500-2-176
    • (2009) BMC Research Notes , vol.2 , pp. 176
    • Victoria, M.1    Colina, R.2    Miagostovich, M.P.3
  • 85
    • 79956225207 scopus 로고    scopus 로고
    • Identification of potential conserved RNA secondary structure throughout influenza A coding regions
    • DOI: 10.1261/rna.2619511
    • Moss WN, Priore SF, Turner DH. Identification of potential conserved RNA secondary structure throughout influenza A coding regions. RNA 2011; 17: 991-1011. DOI: 10.1261/rna.2619511
    • (2011) RNA , vol.17 , pp. 991-1011
    • Moss, W.N.1    Priore, S.F.2    Turner, D.H.3
  • 86
    • 84878526763 scopus 로고    scopus 로고
    • Novel cis-acting element within the capsid-coding region enhances flavivirus viral-RNA replication by regulating genome cyclization
    • DOI: 10.1128/JVI.00243-13
    • Liu ZY, Li XF, Jiang T, et al. Novel cis-acting element within the capsid-coding region enhances flavivirus viral-RNA replication by regulating genome cyclization. Journal of Virology 2013; 87: 6804-6818. DOI: 10.1128/JVI.00243-13
    • (2013) Journal of Virology , vol.87 , pp. 6804-6818
    • Liu, Z.Y.1    Li, X.F.2    Jiang, T.3
  • 87
    • 0031762554 scopus 로고    scopus 로고
    • The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication
    • McKnight KL, Lemon SM. The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication. RNA 1998; 4: 1569-1584.
    • (1998) RNA , vol.4 , pp. 1569-1584
    • McKnight, K.L.1    Lemon, S.M.2
  • 89
    • 0034003829 scopus 로고    scopus 로고
    • Identification of a cis-acting replication element within the poliovirus coding region
    • Goodfellow I, Chaudhry Y, Richardson A, et al. Identification of a cis-acting replication element within the poliovirus coding region. Journal of Virology 2000; 74: 4590-4600.
    • (2000) Journal of Virology , vol.74 , pp. 4590-4600
    • Goodfellow, I.1    Chaudhry, Y.2    Richardson, A.3
  • 90
    • 0033766003 scopus 로고    scopus 로고
    • Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg
    • Paul AV, Rieder E, Kim DW, et al. Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg. Journal of Virology 2000; 74: 10, 359-10, 370.
    • (2000) Journal of Virology , vol.74 , pp. 10359-10370
    • Paul, A.V.1    Rieder, E.2    Kim, D.W.3
  • 91
    • 52649121446 scopus 로고    scopus 로고
    • m of the initiating nucleoside triphosphate for viral RNA replication
    • DOI: 10.1128/JVI.00427-08
    • m of the initiating nucleoside triphosphate for viral RNA replication. Journal of Virology 2008; 82: 9400-9408. DOI: 10.1128/JVI.00427-08
    • (2008) Journal of Virology , vol.82 , pp. 9400-9408
    • Steil, B.P.1    Barton, D.J.2
  • 92
    • 0347634413 scopus 로고    scopus 로고
    • A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication
    • You S, Stump DD, Branch AD, et al. A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication. Journal of Virology 2004; 78: 1352-1366.
    • (2004) Journal of Virology , vol.78 , pp. 1352-1366
    • You, S.1    Stump, D.D.2    Branch, A.D.3
  • 93
    • 4644328613 scopus 로고    scopus 로고
    • cis-Acting RNA signals in the NS5B C-terminal coding sequence of the hepatitis C virus genome
    • Lee H, Shin H, Wimmer E, et al. cis-Acting RNA signals in the NS5B C-terminal coding sequence of the hepatitis C virus genome. Journal of Virology 2004; 78: 10, 865-10, 877.
    • (2004) Journal of Virology , vol.78 , pp. 10865-10877
    • Lee, H.1    Shin, H.2    Wimmer, E.3
  • 94
    • 84864951957 scopus 로고    scopus 로고
    • A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication
    • DOI: 10.1093/nar/gks370
    • Tuplin A, Struthers M, Simmonds P, et al. A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication. Nucleic Acids Research 2012; 40: 6908-6921. DOI: 10.1093/nar/gks370
    • (2012) Nucleic Acids Research , vol.40 , pp. 6908-6921
    • Tuplin, A.1    Struthers, M.2    Simmonds, P.3
  • 95
    • 84879298640 scopus 로고    scopus 로고
    • Direct evidence for RNA-RNA interactions at the 3' end of the Hepatitis C virus genome using surface plasmon resonance
    • DOI: 10.1261/rna.037606.112
    • Palau W, Masante C, Ventura M, et al. Direct evidence for RNA-RNA interactions at the 3' end of the Hepatitis C virus genome using surface plasmon resonance. RNA 2013; 19: 982-991. DOI: 10.1261/rna.037606.112
    • (2013) RNA , vol.19 , pp. 982-991
    • Palau, W.1    Masante, C.2    Ventura, M.3
  • 96
    • 84876387453 scopus 로고    scopus 로고
    • Hepatitis C virus RNA: molecular switches mediated by long-range RNA-RNA interactions?
    • DOI: 10.1093/nar/gks1318
    • Shetty S, Stefanovic S, Mihailescu MR. Hepatitis C virus RNA: molecular switches mediated by long-range RNA-RNA interactions? Nucleic Acids Research 2013; 41: 2526-2540. DOI: 10.1093/nar/gks1318
    • (2013) Nucleic Acids Research , vol.41 , pp. 2526-2540
    • Shetty, S.1    Stefanovic, S.2    Mihailescu, M.R.3
  • 97
    • 69049116216 scopus 로고    scopus 로고
    • A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome
    • Romero-López C, Berzal-Herranz A. A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome. RNA 2009; 15: 1740-1752.
    • (2009) RNA , vol.15 , pp. 1740-1752
    • Romero-López, C.1    Berzal-Herranz, A.2
  • 98
    • 84856235423 scopus 로고    scopus 로고
    • The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation
    • DOI: 10.1007/s00018-011-0729-z
    • Romero-López C, Berzal-Herranz A. The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation. Cellular and Molecular Life Sciences 2012; 69: 103-113. DOI: 10.1007/s00018-011-0729-z
    • (2012) Cellular and Molecular Life Sciences , vol.69 , pp. 103-113
    • Romero-López, C.1    Berzal-Herranz, A.2
  • 99
    • 84871192094 scopus 로고    scopus 로고
    • The folding of the hepatitis C virus internal ribosome entry site depends on the 3'-end of the viral genome
    • DOI: 10.1093/nar/gks927
    • Romero-López C, Barroso-delJesus A, García-Sacristán A, et al. The folding of the hepatitis C virus internal ribosome entry site depends on the 3'-end of the viral genome. Nucleic Acids Research 2012; 40: 11, 697-11, 713. DOI: 10.1093/nar/gks927
    • (2012) Nucleic Acids Research , vol.40 , pp. 11697-11713
    • Romero-López, C.1    Barroso-delJesus, A.2    García-Sacristán, A.3
  • 100
    • 0035989013 scopus 로고    scopus 로고
    • Determinants of hepatitis C translational initiation in vitro, in cultured cells and mice
    • McCaffrey AP, Ohashi K, Meuse L, et al. Determinants of hepatitis C translational initiation in vitro, in cultured cells and mice. Molecular Therapy 2002; 5: 676-684.
    • (2002) Molecular Therapy , vol.5 , pp. 676-684
    • McCaffrey, A.P.1    Ohashi, K.2    Meuse, L.3
  • 101
    • 33644869671 scopus 로고    scopus 로고
    • The hepatitis C virus 3'-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase
    • Bradrick SS, Walters RW, Gromeier M. The hepatitis C virus 3'-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase. Nucleic Acids Research 2006; 34: 1293-1303.
    • (2006) Nucleic Acids Research , vol.34 , pp. 1293-1303
    • Bradrick, S.S.1    Walters, R.W.2    Gromeier, M.3
  • 102
    • 33751203577 scopus 로고    scopus 로고
    • The hepatitis C virus RNA 3'-untranslated region strongly enhances translation directed by the internal ribosome entry site
    • Song Y, Friebe P, Tzima E, et al. The hepatitis C virus RNA 3'-untranslated region strongly enhances translation directed by the internal ribosome entry site. Journal of Virology 2006; 80: 11, 579-11, 588.
    • (2006) Journal of Virology , vol.80 , pp. 11579-11588
    • Song, Y.1    Friebe, P.2    Tzima, E.3
  • 103
    • 48249130096 scopus 로고    scopus 로고
    • Hepatitis C virus internal ribosome entry site-mediated translation is stimulated by cis-acting RNA elements and trans-acting viral factors
    • Lourenco S, Costa F, Debarges B, et al. Hepatitis C virus internal ribosome entry site-mediated translation is stimulated by cis-acting RNA elements and trans-acting viral factors. FEBS Journal 2008; 275: 4179-4197.
    • (2008) FEBS Journal , vol.275 , pp. 4179-4197
    • Lourenco, S.1    Costa, F.2    Debarges, B.3
  • 104
    • 0023645817 scopus 로고
    • Conserved elements in the 3' untranslated region of flavivirus RNAs and potential cyclization sequences
    • DOI: 10.1016/0022-2836(87)90455-4
    • Hahn CS, Hahn YS, Rice CM, et al. Conserved elements in the 3' untranslated region of flavivirus RNAs and potential cyclization sequences. Journal of Molecular Biology 1987; 198: 33-41. DOI: 10.1016/0022-2836(87)90455-4
    • (1987) Journal of Molecular Biology , vol.198 , pp. 33-41
    • Hahn, C.S.1    Hahn, Y.S.2    Rice, C.M.3
  • 105
    • 18744362727 scopus 로고    scopus 로고
    • Long-range RNA-RNA interactions circularize the dengue virus genome
    • DOI: 10.1128/JVI.79.11.6631-6643.2005
    • Alvarez DE, Lodeiro MF, Luduena SJ, et al. Long-range RNA-RNA interactions circularize the dengue virus genome. Journal of Virology 2005; 79: 6631-6643. DOI: 10.1128/JVI.79.11.6631-6643.2005
    • (2005) Journal of Virology , vol.79 , pp. 6631-6643
    • Alvarez, D.E.1    Lodeiro, M.F.2    Luduena, S.J.3
  • 106
    • 77952736780 scopus 로고    scopus 로고
    • Interplay of RNA elements in the dengue virus 5' and 3' ends required for viral RNA replication
    • DOI: 10.1128/JVI.02042-09
    • Friebe P, Harris E. Interplay of RNA elements in the dengue virus 5' and 3' ends required for viral RNA replication. Journal of Virology 2010; 84: 6103-6118. DOI: 10.1128/JVI.02042-09
    • (2010) Journal of Virology , vol.84 , pp. 6103-6118
    • Friebe, P.1    Harris, E.2
  • 107
    • 0029118922 scopus 로고
    • Controlled, targeted, intracellular expression of ribozymes: progress and problems
    • Rossi JJ. Controlled, targeted, intracellular expression of ribozymes: progress and problems. Trends in Biotechnology 1995; 13: 301-306.
    • (1995) Trends in Biotechnology , vol.13 , pp. 301-306
    • Rossi, J.J.1
  • 108
    • 61549117889 scopus 로고    scopus 로고
    • Nucleic acids-based therapeutics in the battle against pathogenic viruses
    • DOI: 10.1007/978-3-540-79086-0_9
    • Haasnoot J, Berkhout B. Nucleic acids-based therapeutics in the battle against pathogenic viruses. Handbook of Experimental Pharmacology 2009: 243-263. DOI: 10.1007/978-3-540-79086-0_9
    • (2009) Handbook of Experimental Pharmacology , pp. 243-263
    • Haasnoot, J.1    Berkhout, B.2
  • 109
    • 0032700656 scopus 로고    scopus 로고
    • Molecular mechanisms of action of antisense drugs
    • Crooke ST. Molecular mechanisms of action of antisense drugs. Biochimica et Biophysica Acta 1999; 1489: 31-44.
    • (1999) Biochimica et Biophysica Acta , vol.1489 , pp. 31-44
    • Crooke, S.T.1
  • 110
    • 0037044192 scopus 로고    scopus 로고
    • 2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription
    • DOI: 10.1021/bi025974d
    • Darfeuille F, Arzumanov A, Gait MJ, et al. 2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription. Biochemistry 2002; 41: 12, 186-12, 192. DOI: 10.1021/bi025974d
    • (2002) Biochemistry , vol.41 , pp. 12186-12192
    • Darfeuille, F.1    Arzumanov, A.2    Gait, M.J.3
  • 111
    • 28844476544 scopus 로고    scopus 로고
    • A phase I trial of an antisense inhibitor of hepatitis C virus (ISIS 14803), administered to chronic hepatitis C patients
    • McHutchison JG, Patel K, Pockros P, et al. A phase I trial of an antisense inhibitor of hepatitis C virus (ISIS 14803), administered to chronic hepatitis C patients. Journal of Hepatology 2006; 44: 88-96.
    • (2006) Journal of Hepatology , vol.44 , pp. 88-96
    • McHutchison, J.G.1    Patel, K.2    Pockros, P.3
  • 112
    • 20644442897 scopus 로고    scopus 로고
    • Inhibition of HIV-1 replication by RNA targeted against the LTR region
    • Puerta-Fernández E, Barroso-delJesus A, Romero-López C, et al. Inhibition of HIV-1 replication by RNA targeted against the LTR region. AIDS 2005; 19: 863-870.
    • (2005) AIDS , vol.19 , pp. 863-870
    • Puerta-Fernández, E.1    Barroso-delJesus, A.2    Romero-López, C.3
  • 113
    • 33845927994 scopus 로고    scopus 로고
    • Inhibition of infectious human immunodeficiency virus type 1 virions via lentiviral vector encoded short antisense RNAs
    • DOI: 10.1089/oli.2006.16.287
    • Gu S, Ji J, Kim JD, et al. Inhibition of infectious human immunodeficiency virus type 1 virions via lentiviral vector encoded short antisense RNAs. Oligonucleotides 2006; 16: 287-295. DOI: 10.1089/oli.2006.16.287
    • (2006) Oligonucleotides , vol.16 , pp. 287-295
    • Gu, S.1    Ji, J.2    Kim, J.D.3
  • 115
    • 84866950355 scopus 로고    scopus 로고
    • RNA interference for viral infections
    • DOI: CDT-EPUB-20120528-25
    • Blake SJ, Bokhari FF, McMillan NA. RNA interference for viral infections. Current Drug Targets 2012; 13: 1411-1420. DOI: CDT-EPUB-20120528-25
    • (2012) Current Drug Targets , vol.13 , pp. 1411-1420
    • Blake, S.J.1    Bokhari, F.F.2    McMillan, N.A.3
  • 116
    • 13744250159 scopus 로고    scopus 로고
    • Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality
    • DOI: 10.1093/nar/gki193
    • Elmen J, Thonberg H, Ljungberg K, et al. Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality. Nucleic Acids Research 2005; 33: 439-447. DOI: 10.1093/nar/gki193
    • (2005) Nucleic Acids Research , vol.33 , pp. 439-447
    • Elmen, J.1    Thonberg, H.2    Ljungberg, K.3
  • 117
    • 0142124143 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 escape from RNA interference
    • Boden D, Pusch O, Lee F, et al. Human immunodeficiency virus type 1 escape from RNA interference. Journal of Virology 2003; 77: 11, 531-11, 535.
    • (2003) Journal of Virology , vol.77 , pp. 11531-11535
    • Boden, D.1    Pusch, O.2    Lee, F.3
  • 118
    • 77953124494 scopus 로고    scopus 로고
    • Anticipating and blocking HIV-1 escape by second generation antiviral shRNAs
    • DOI: 10.1186/1742-4690-7-52
    • Schopman NC, ter Brake O, Berkhout B. Anticipating and blocking HIV-1 escape by second generation antiviral shRNAs. Retrovirology 2010; 7: 52. DOI: 10.1186/1742-4690-7-52
    • (2010) Retrovirology , vol.7 , pp. 52
    • Schopman, N.C.1    ter Brake, O.2    Berkhout, B.3
  • 119
    • 84867068265 scopus 로고    scopus 로고
    • Inhibition of hepatitis C virus replication by intracellular delivery of multiple siRNAs by nanosomes
    • DOI: 10.1038/mt.2012.107
    • Chandra PK, Kundu AK, Hazari S, et al. Inhibition of hepatitis C virus replication by intracellular delivery of multiple siRNAs by nanosomes. Molecular Therapy 2012; 20: 1724-1736. DOI: 10.1038/mt.2012.107
    • (2012) Molecular Therapy , vol.20 , pp. 1724-1736
    • Chandra, P.K.1    Kundu, A.K.2    Hazari, S.3
  • 120
    • 55849144769 scopus 로고    scopus 로고
    • Sustained delivery of siRNAs targeting viral infection by cell-degradable multilayered polyelectrolyte films
    • DOI: 10.1073/pnas.0800156105
    • Dimitrova M, Affolter C, Meyer F, et al. Sustained delivery of siRNAs targeting viral infection by cell-degradable multilayered polyelectrolyte films. Proceedings of the National Academy of Sciences of the United States of America 2008; 105: 16, 320-16, 325. DOI: 10.1073/pnas.0800156105
    • (2008) Proceedings of the National Academy of Sciences of the United States of America , vol.105 , pp. 16320-16325
    • Dimitrova, M.1    Affolter, C.2    Meyer, F.3
  • 121
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington AD, Szostak JW. In vitro selection of RNA molecules that bind specific ligands. Nature 1990; 346: 818-822.
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 122
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk C, Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 1990; 249: 505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 123
    • 77954966575 scopus 로고    scopus 로고
    • In vitro and ex vivo selection procedures for identifying potentially therapeutic DNA and RNA molecules
    • Marton S, Reyes-Darias JA, Sánchez-Luque FJ, et al. In vitro and ex vivo selection procedures for identifying potentially therapeutic DNA and RNA molecules. Molecules 2010; 15: 4610-4638.
    • (2010) Molecules , vol.15 , pp. 4610-4638
    • Marton, S.1    Reyes-Darias, J.A.2    Sánchez-Luque, F.J.3
  • 124
    • 0032795088 scopus 로고    scopus 로고
    • In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1
    • Ducongé F, Toulmé JJ. In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1. RNA 1999; 5: 1605-1614.
    • (1999) RNA , vol.5 , pp. 1605-1614
    • Ducongé, F.1    Toulmé, J.J.2
  • 125
    • 0034741675 scopus 로고    scopus 로고
    • RNA and N3'->P5' kissing aptamers targeted to the trans-activation responsive (TAR) RNA of the human immunodeficiency virus-1
    • Darfeuille F, Cazenave C, Gryaznov S, et al. RNA and N3'->P5' kissing aptamers targeted to the trans-activation responsive (TAR) RNA of the human immunodeficiency virus-1. Nucleosides, Nucleotides & Nucleic Acids 2001; 20: 441-449.
    • (2001) Nucleosides, Nucleotides & Nucleic Acids , vol.20 , pp. 441-449
    • Darfeuille, F.1    Cazenave, C.2    Gryaznov, S.3
  • 127
    • 0242317674 scopus 로고    scopus 로고
    • Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer
    • Beaurain F, Di Primo C, Toulmé JJ, et al. Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer. Nucleic Acids Research 2003; 31: 4275-4284.
    • (2003) Nucleic Acids Research , vol.31 , pp. 4275-4284
    • Beaurain, F.1    Di Primo, C.2    Toulmé, J.J.3
  • 128
    • 32244445202 scopus 로고    scopus 로고
    • Bimodal loop-loop interactions increase the affinity of RNA aptamers for HIV-1 RNA structures
    • Boucard D, Toulmé JJ, Di Primo C. Bimodal loop-loop interactions increase the affinity of RNA aptamers for HIV-1 RNA structures. Biochemistry 2006; 45: 1518-1524.
    • (2006) Biochemistry , vol.45 , pp. 1518-1524
    • Boucard, D.1    Toulmé, J.J.2    Di Primo, C.3
  • 129
    • 35649014422 scopus 로고    scopus 로고
    • NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer
    • Lebars I, Richard T, Di Primo C, et al. NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer. Nucleic Acids Research 2007; 35: 6103-6114.
    • (2007) Nucleic Acids Research , vol.35 , pp. 6103-6114
    • Lebars, I.1    Richard, T.2    Di Primo, C.3
  • 130
    • 0037035556 scopus 로고    scopus 로고
    • Apical loop-internal loop interactions: a new RNA-RNA recognition motif identified through in vitro selection against RNA hairpins of the hepatitis C virus mRNA
    • Aldaz-Carroll L, Tallet B, Dausse E, et al. Apical loop-internal loop interactions: a new RNA-RNA recognition motif identified through in vitro selection against RNA hairpins of the hepatitis C virus mRNA. Biochemistry 2002; 41: 5883-5893.
    • (2002) Biochemistry , vol.41 , pp. 5883-5893
    • Aldaz-Carroll, L.1    Tallet, B.2    Dausse, E.3
  • 131
    • 0037368588 scopus 로고    scopus 로고
    • RNA aptamers targeted to domain II of hepatitis C virus IRES that bind to its apical loop region
    • Kikuchi K, Umehara T, Fukuda K, et al. RNA aptamers targeted to domain II of hepatitis C virus IRES that bind to its apical loop region. Journal of biochemistry (Tokyo) 2003; 133: 263-270.
    • (2003) Journal of biochemistry (Tokyo) , vol.133 , pp. 263-270
    • Kikuchi, K.1    Umehara, T.2    Fukuda, K.3
  • 132
    • 0037440001 scopus 로고    scopus 로고
    • Antisense oligonucleotides targeted to the domain IIId of the hepatitis C virus IRES compete with 40S ribosomal subunit binding and prevent in vitro translation
    • Tallet-López B, Aldaz-Carroll L, Chabas S, et al. Antisense oligonucleotides targeted to the domain IIId of the hepatitis C virus IRES compete with 40S ribosomal subunit binding and prevent in vitro translation. Nucleic Acids Research 2003; 31: 734-742.
    • (2003) Nucleic Acids Research , vol.31 , pp. 734-742
    • Tallet-López, B.1    Aldaz-Carroll, L.2    Chabas, S.3
  • 133
    • 13844306367 scopus 로고    scopus 로고
    • A hepatitis C virus (HCV) internal ribosome entry site (IRES) domain III-IV-targeted aptamer inhibits translation by binding to an apical loop of domain IIId
    • Kikuchi K, Umehara T, Fukuda K, et al. A hepatitis C virus (HCV) internal ribosome entry site (IRES) domain III-IV-targeted aptamer inhibits translation by binding to an apical loop of domain IIId. Nucleic Acids Research 2005; 33: 683-692.
    • (2005) Nucleic Acids Research , vol.33 , pp. 683-692
    • Kikuchi, K.1    Umehara, T.2    Fukuda, K.3
  • 134
    • 84872130283 scopus 로고    scopus 로고
    • RNA aptamer-mediated interference of HCV replication by targeting the CRE-5BSL3.2 domain
    • DOI: 10.1111/j.1365-2893.2012.01629.x
    • Marton S, Romero-López C, Berzal-Herranz A. RNA aptamer-mediated interference of HCV replication by targeting the CRE-5BSL3.2 domain. Journal of Viral Hepatitis 2013; 20: 103-112. DOI: 10.1111/j.1365-2893.2012.01629.x
    • (2013) Journal of Viral Hepatitis , vol.20 , pp. 103-112
    • Marton, S.1    Romero-López, C.2    Berzal-Herranz, A.3
  • 136
    • 33846840878 scopus 로고    scopus 로고
    • Aptamers in the virologists' toolkit
    • DOI: 88/2/351
    • James W. Aptamers in the virologists' toolkit. Journal of General Virology 2007; 88: 351-364. DOI: 88/2/351
    • (2007) Journal of General Virology , vol.88 , pp. 351-364
    • James, W.1
  • 137
    • 14944361287 scopus 로고    scopus 로고
    • Interfering with hepatitis C virus IRES activity using RNA molecules identified by a novel in vitro selection method
    • Romero-López C, Barroso-delJesus A, Puerta-Fernáandez E, et al. Interfering with hepatitis C virus IRES activity using RNA molecules identified by a novel in vitro selection method. Biological Chemistry 2005; 386: 183-190.
    • (2005) Biological Chemistry , vol.386 , pp. 183-190
    • Romero-López, C.1    Barroso-delJesus, A.2    Puerta-Fernáandez, E.3
  • 138
    • 38549175237 scopus 로고    scopus 로고
    • Inhibition of hepatitis C virus internal ribosome entry site-mediated translation by an RNA targeting the conserved IIIf domain
    • Romero-López C, Díaz-González R, Berzal-Herranz A. Inhibition of hepatitis C virus internal ribosome entry site-mediated translation by an RNA targeting the conserved IIIf domain. Cellular and Molecular Life Sciences 2007; 64: 2994-3006.
    • (2007) Cellular and Molecular Life Sciences , vol.64 , pp. 2994-3006
    • Romero-López, C.1    Díaz-González, R.2    Berzal-Herranz, A.3
  • 139
    • 48349105059 scopus 로고    scopus 로고
    • Novel dual inhibitory function aptamer-siRNA delivery system for HIV-1 therapy
    • DOI: 10.1038/mt.200892
    • Zhou J, Li H, Li S, et al. Novel dual inhibitory function aptamer-siRNA delivery system for HIV-1 therapy. Molecular Therapy 2008; 16: 1481-1489. DOI: 10.1038/mt.200892
    • (2008) Molecular Therapy , vol.16 , pp. 1481-1489
    • Zhou, J.1    Li, H.2    Li, S.3
  • 140
    • 67649224061 scopus 로고    scopus 로고
    • Increased inhibitory ability of conjugated RNA aptamers against the HCV IRES
    • DOI: S0006-291X(09)01118-8
    • Kikuchi K, Umehara T, Nishikawa F, et al. Increased inhibitory ability of conjugated RNA aptamers against the HCV IRES. Biochemical and Biophysical Research Communications 2009; 386: 118-123. DOI: S0006-291X(09)01118-8
    • (2009) Biochemical and Biophysical Research Communications , vol.386 , pp. 118-123
    • Kikuchi, K.1    Umehara, T.2    Nishikawa, F.3
  • 142
    • 84860278185 scopus 로고    scopus 로고
    • An engineered inhibitor RNA that efficiently interferes with hepatitis C virus translation and replication
    • DOI: 10.1016/j.antiviral.2012.02.015
    • Romero-López C, Berzal-Herranz B, Gomez J, et al. An engineered inhibitor RNA that efficiently interferes with hepatitis C virus translation and replication. Antiviral Research 2012; 94: 131-138. DOI: 10.1016/j.antiviral.2012.02.015
    • (2012) Antiviral Research , vol.94 , pp. 131-138
    • Romero-López, C.1    Berzal-Herranz, B.2    Gomez, J.3
  • 143
    • 80052230213 scopus 로고    scopus 로고
    • Improving the stability of aptamers by chemical modification
    • DOI: BSP/CMC/E-Pub/2011/ 310
    • Wang RE, Wu H, Niu Y, et al. Improving the stability of aptamers by chemical modification. Current Medicinal Chemistry 2011; 18: 4126-4138. DOI: BSP/CMC/E-Pub/2011/ 310
    • (2011) Current Medicinal Chemistry , vol.18 , pp. 4126-4138
    • Wang, R.E.1    Wu, H.2    Niu, Y.3
  • 144
    • 17644399512 scopus 로고    scopus 로고
    • Pharmacokinetics and biodistribution of novel aptamer compositions
    • Healy JM, Lewis SD, Kurz M, et al. Pharmacokinetics and biodistribution of novel aptamer compositions. Pharmaceutical Research 2004; 21: 2234-2246.
    • (2004) Pharmaceutical Research , vol.21 , pp. 2234-2246
    • Healy, J.M.1    Lewis, S.D.2    Kurz, M.3
  • 145
    • 0034699519 scopus 로고    scopus 로고
    • Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
    • DOI: 10.1038/35030019.
    • Carter AP, Clemons WM, Brodersen DE, et al. Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics. Nature 2000; 407: 340-348. DOI: 10.1038/35030019.
    • (2000) Nature , vol.407 , pp. 340-348
    • Carter, A.P.1    Clemons, W.M.2    Brodersen, D.E.3
  • 146
    • 0034886697 scopus 로고    scopus 로고
    • Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site
    • DOI: S0969212601006293
    • Vicens Q, Westhof E. Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site. Structure 2001; 9: 647-658. DOI: S0969212601006293
    • (2001) Structure , vol.9 , pp. 647-658
    • Vicens, Q.1    Westhof, E.2
  • 147
    • 0037462818 scopus 로고    scopus 로고
    • HIV-1 RNA dimerization initiation site is structurally similar to the ribosomal A site and binds aminoglycoside antibiotics
    • DOI: 10.1074/jbc.M205726200
    • Ennifar E, Paillart JC, Marquet R, et al. HIV-1 RNA dimerization initiation site is structurally similar to the ribosomal A site and binds aminoglycoside antibiotics. Journal of Biological Chemistry 2003; 278: 2723-2730. DOI: 10.1074/jbc.M205726200
    • (2003) Journal of Biological Chemistry , vol.278 , pp. 2723-2730
    • Ennifar, E.1    Paillart, J.C.2    Marquet, R.3
  • 148
    • 33646829647 scopus 로고    scopus 로고
    • Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell
    • DOI: 10.1093/nar/gkl317
    • Ennifar E, Paillart JC, Bodlenner A, et al. Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell. Nucleic Acids Research 2006; 34: 2328-2339. DOI: 10.1093/nar/gkl317
    • (2006) Nucleic Acids Research , vol.34 , pp. 2328-2339
    • Ennifar, E.1    Paillart, J.C.2    Bodlenner, A.3
  • 149
    • 84862195096 scopus 로고    scopus 로고
    • A proposal for a new HIV-1 DLS structural model
    • DOI: 10.1093/nar/gks156
    • Sakuragi J, Ode H, Sakuragi S, et al. A proposal for a new HIV-1 DLS structural model. Nucleic Acids Research 2012; 40: 5012-5022. DOI: 10.1093/nar/gks156
    • (2012) Nucleic Acids Research , vol.40 , pp. 5012-5022
    • Sakuragi, J.1    Ode, H.2    Sakuragi, S.3
  • 151
    • 84862966024 scopus 로고    scopus 로고
    • Toward targeting RNA structure: branched peptides as cell-permeable ligands to TAR RNA
    • DOI: 10.1021/cb200181v
    • Bryson DI, Zhang W, McLendon PM, et al. Toward targeting RNA structure: branched peptides as cell-permeable ligands to TAR RNA. ACS Chemical Biology 2012; 7: 210-217. DOI: 10.1021/cb200181v
    • (2012) ACS Chemical Biology , vol.7 , pp. 210-217
    • Bryson, D.I.1    Zhang, W.2    McLendon, P.M.3
  • 152
    • 70350347488 scopus 로고    scopus 로고
    • Conformational inhibition of the hepatitis C virus internal ribosome entry site RNA
    • DOI: 10.1038/nchembio.217
    • Parsons J, Castaldi MP, Dutta S, et al. Conformational inhibition of the hepatitis C virus internal ribosome entry site RNA. Nature Chemical Biology 2009; 5: 823-825. DOI: 10.1038/nchembio.217
    • (2009) Nature Chemical Biology , vol.5 , pp. 823-825
    • Parsons, J.1    Castaldi, M.P.2    Dutta, S.3
  • 153
    • 84859454654 scopus 로고    scopus 로고
    • Structure of a hepatitis C virus RNA domain in complex with a translation inhibitor reveals a binding mode reminiscent of riboswitches
    • DOI: 10.1073/pnas.1118699109
    • Dibrov SM, Ding K, Brunn ND, et al. Structure of a hepatitis C virus RNA domain in complex with a translation inhibitor reveals a binding mode reminiscent of riboswitches. Proceedings of the National Academy of Sciences of the United States of America 2012; 109: 5223-5228. DOI: 10.1073/pnas.1118699109
    • (2012) Proceedings of the National Academy of Sciences of the United States of America , vol.109 , pp. 5223-5228
    • Dibrov, S.M.1    Ding, K.2    Brunn, N.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.