메뉴 건너뛰기




Volumn 11, Issue 3, 2005, Pages 332-343

A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs

Author keywords

CrPV like; Internal ribosome entry site (IRES); RNA folding; RNA structure; Translation

Indexed keywords

INITIATION FACTOR; MAGNESIUM; RIBONUCLEASE; TRANSACTIVATOR PROTEIN;

EID: 13944276301     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.7184705     Document Type: Article
Times cited : (63)

References (43)
  • 1
    • 3042848954 scopus 로고    scopus 로고
    • Crystal structure of a self-splicing group I intron with both exons
    • Adams, P.L., Stahley, M.R., Kosek, A.B., Wang, J., and Strobel, S.A. 2004. Crystal structure of a self-splicing group I intron with both exons. Nature 430: 45-50.
    • (2004) Nature , vol.430 , pp. 45-50
    • Adams, P.L.1    Stahley, M.R.2    Kosek, A.B.3    Wang, J.4    Strobel, S.A.5
  • 4
    • 0025963132 scopus 로고
    • Visualizing the higher order folding of a catalytic RNA molecule
    • Celander, D.W. and Cech, T.R. 1991. Visualizing the higher order folding of a catalytic RNA molecule. Science 251: 401-407.
    • (1991) Science , vol.251 , pp. 401-407
    • Celander, D.W.1    Cech, T.R.2
  • 5
    • 0001762683 scopus 로고    scopus 로고
    • Picornaviruses of insects
    • (eds. L.K. Miller and A. Ball). Plenum, New York
    • Christian, P.D. and Scotti, P.D. 1998. Picornaviruses of insects. In The insect viruses (eds. L.K. Miller and A. Ball), pp. 301-336. Plenum, New York.
    • (1998) The Insect Viruses , pp. 301-336
    • Christian, P.D.1    Scotti, P.D.2
  • 7
    • 1942437439 scopus 로고    scopus 로고
    • Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts
    • Hatakeyama, Y., Shibuya, N., Nishiyama, T., and Nakashima, N. 2004. Structural variant of the intergenic internal ribosome entry site elements in dicistroviruses and computational search for their counterparts. RNA 10: 779-786.
    • (2004) RNA , vol.10 , pp. 779-786
    • Hatakeyama, Y.1    Shibuya, N.2    Nishiyama, T.3    Nakashima, N.4
  • 8
    • 0035396727 scopus 로고    scopus 로고
    • Internal ribosome entry sites in eukaryotic mRNA molecules
    • Hellen, C.U. and Sarnow, P. 2001. Internal ribosome entry sites in eukaryotic mRNA molecules. Genes & Dev. 15: 1593-1612.
    • (2001) Genes & Dev. , vol.15 , pp. 1593-1612
    • Hellen, C.U.1    Sarnow, P.2
  • 9
    • 0000091608 scopus 로고    scopus 로고
    • Pathway and mechanism of initiation of protein synthesis
    • (eds. N. Sonenberg et al.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Hershey, J.W.B. and Merrick, W.C. 2000. Pathway and mechanism of initiation of protein synthesis. In Translational control of gene expression (eds. N. Sonenberg et al.), pp. 33-88. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (2000) Translational Control of Gene Expression , pp. 33-88
    • Hershey, J.W.B.1    Merrick, W.C.2
  • 10
    • 0037073485 scopus 로고    scopus 로고
    • Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus
    • Jan, E. and Sarnow, P. 2002. Factorless ribosome assembly on the internal ribosome entry site of cricket paralysis virus. J. Mol. Biol. 324: 889-902.
    • (2002) J. Mol. Biol. , vol.324 , pp. 889-902
    • Jan, E.1    Sarnow, P.2
  • 11
    • 0035788058 scopus 로고    scopus 로고
    • Initiator Met-tRNA-independent translation mediated by an internal ribosome entry site element in cricket paralysis virus-like insect viruses
    • Jan, E., Thompson, S.R., Wilson, J.E., Pestova, T.V., Hellen, C.U., and Sarnow, P. 2001. Initiator Met-tRNA-independent translation mediated by an internal ribosome entry site element in cricket paralysis virus-like insect viruses. Cold Spring Harbor Symp. Quant. Biol. 66: 285-292.
    • (2001) Cold Spring Harbor Symp. Quant. Biol. , vol.66 , pp. 285-292
    • Jan, E.1    Thompson, S.R.2    Wilson, J.E.3    Pestova, T.V.4    Hellen, C.U.5    Sarnow, P.6
  • 12
    • 0346103682 scopus 로고    scopus 로고
    • Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis
    • Jan, E., Kinzy, T.G., and Sarnow, P. 2003. Divergent tRNA-like element supports initiation, elongation, and termination of protein biosynthesis. Proc. Natl. Acad. Sci. 100: 15410-15415.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 15410-15415
    • Jan, E.1    Kinzy, T.G.2    Sarnow, P.3
  • 13
    • 0035259873 scopus 로고    scopus 로고
    • A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation
    • Kanamori, Y. and Nakashima, N. 2001. A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation. RNA 7: 266-274.
    • (2001) RNA , vol.7 , pp. 266-274
    • Kanamori, Y.1    Nakashima, N.2
  • 14
    • 0033600934 scopus 로고    scopus 로고
    • The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold
    • Kieft, J.S., Zhou, K., Jubin, R., Murray, M.G., Lau, J.Y., and Doudna, J.A. 1999. The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold. J. Mol. Biol. 292: 513-529.
    • (1999) J. Mol. Biol. , vol.292 , pp. 513-529
    • Kieft, J.S.1    Zhou, K.2    Jubin, R.3    Murray, M.G.4    Lau, J.Y.5    Doudna, J.A.6
  • 15
    • 0035260658 scopus 로고    scopus 로고
    • Mechanism of ribosome recruitment by hepatitis C IRES RNA
    • Kieft, J.S., Zhou, K., Jubin, R., and Doudna, J.A. 2001. Mechanism of ribosome recruitment by hepatitis C IRES RNA. RNA 7: 194-206.
    • (2001) RNA , vol.7 , pp. 194-206
    • Kieft, J.S.1    Zhou, K.2    Jubin, R.3    Doudna, J.A.4
  • 16
    • 0033932448 scopus 로고    scopus 로고
    • An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus
    • Kolupaeva, V.G., Pestova, T.V., and Hellen, C.U. 2000a. An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus. J. Virol. 74: 6242-6250.
    • (2000) J. Virol. , vol.74 , pp. 6242-6250
    • Kolupaeva, V.G.1    Pestova, T.V.2    Hellen, C.U.3
  • 17
    • 0034542566 scopus 로고    scopus 로고
    • Ribosomal binding to the internal ribosomal entry site of classical swine fever virus
    • -. 2000b. Ribosomal binding to the internal ribosomal entry site of classical swine fever virus. RNA 6: 1791-1807.
    • (2000) RNA , vol.6 , pp. 1791-1807
  • 18
    • 0024359787 scopus 로고
    • Defining the inside and outside of a catalytic RNA molecule
    • Latham, J.A. and Cech, T.R. 1989. Defining the inside and outside of a catalytic RNA molecule. Science 245: 276-282.
    • (1989) Science , vol.245 , pp. 276-282
    • Latham, J.A.1    Cech, T.R.2
  • 19
    • 0036352357 scopus 로고    scopus 로고
    • A summary of taxonomic changes recently approved by ICTV
    • Mayo, M.A. 2002. A summary of taxonomic changes recently approved by ICTV. Arch. Virol. 147: 1655-1663.
    • (2002) Arch. Virol. , vol.147 , pp. 1655-1663
    • Mayo, M.A.1
  • 20
    • 0037349339 scopus 로고    scopus 로고
    • The Apaf-1 internal ribosome entry segment attains the correct structural conformation for function via interactions with PTB and unr
    • Mitchell, S.A., Spriggs, K.A., Coldwell, M.J., Jackson, R.J., and Willis, A.E. 2003. The Apaf-1 internal ribosome entry segment attains the correct structural conformation for function via interactions with PTB and unr. Mol. Cell 11: 757-771.
    • (2003) Mol. Cell , vol.11 , pp. 757-771
    • Mitchell, S.A.1    Spriggs, K.A.2    Coldwell, M.J.3    Jackson, R.J.4    Willis, A.E.5
  • 21
    • 0027173193 scopus 로고
    • An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme
    • Murphy, F.L. and Cech, T.R. 1993. An independently folding domain of RNA tertiary structure within the Tetrahymena ribozyme. Biochemistry 32: 5291-5300.
    • (1993) Biochemistry , vol.32 , pp. 5291-5300
    • Murphy, F.L.1    Cech, T.R.2
  • 22
    • 0027985820 scopus 로고
    • Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme
    • Murphy, F.L., Wang, Y.H., Griffith, J.D., and Cech, T.R. 1994. Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme. Science 265: 1709-1712.
    • (1994) Science , vol.265 , pp. 1709-1712
    • Murphy, F.L.1    Wang, Y.H.2    Griffith, J.D.3    Cech, T.R.4
  • 23
    • 0038750886 scopus 로고    scopus 로고
    • Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes
    • Nishiyama, T., Yamamoto, H., Shibuya, N., Hatakeyama, Y., Hachimori, A., Uchiumi, T., and Nakashima, N. 2003. Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes. Nucleic Acids Res. 31: 2434-2442.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2434-2442
    • Nishiyama, T.1    Yamamoto, H.2    Shibuya, N.3    Hatakeyama, Y.4    Hachimori, A.5    Uchiumi, T.6    Nakashima, N.7
  • 24
    • 0028945859 scopus 로고
    • Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P
    • Pan, T. 1995. Higher order folding and domain analysis of the ribozyme from Bacillus subtilis ribonuclease P. Biochemistry 34: 902-909.
    • (1995) Biochemistry , vol.34 , pp. 902-909
    • Pan, T.1
  • 25
    • 0037439060 scopus 로고    scopus 로고
    • Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA
    • Pestova, T.V. and Hellen, C.U. 2003. Translation elongation after assembly of ribosomes on the Cricket paralysis virus internal ribosomal entry site without initiation factors or initiator tRNA. Genes & Dev. 17: 181-186.
    • (2003) Genes & Dev. , vol.17 , pp. 181-186
    • Pestova, T.V.1    Hellen, C.U.2
  • 26
    • 0031905698 scopus 로고    scopus 로고
    • A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs
    • Pestova, T.V., Shatsky, I.N., Fletcher, S.P., Jackson, R.J., and Hellen, C.U.T. 1998. A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs. Genes & Dev. 12:
    • (1998) Genes & Dev. , vol.12
    • Pestova, T.V.1    Shatsky, I.N.2    Fletcher, S.P.3    Jackson, R.J.4    Hellen, C.U.T.5
  • 28
    • 13944271964 scopus 로고    scopus 로고
    • Position of the CrPV IRES on the 40S subunit and factor dependence of IRES/80S ribosome assembly
    • Pestova, T.V., Lomakin, I.B., and Hellen, C.U. 2004. Position of the CrPV IRES on the 40S subunit and factor dependence of IRES/80S ribosome assembly. EMBO Rep. 5: 906-913. 67-83.
    • (2004) EMBO Rep. , vol.5 , pp. 906-913
    • Pestova, T.V.1    Lomakin, I.B.2    Hellen, C.U.3
  • 29
    • 0031036440 scopus 로고    scopus 로고
    • An improved function for fitting sedimentation velocity data for low-molecular-weight solutes
    • Philo, J.S. 1997. An improved function for fitting sedimentation velocity data for low-molecular-weight solutes. Biophys. J. 72: 435-444.
    • (1997) Biophys. J. , vol.72 , pp. 435-444
    • Philo, J.S.1
  • 30
    • 0037369073 scopus 로고    scopus 로고
    • Viral internal ribosome entry site elements: Novel ribosome-RNA complexes and roles in viral pathogenesis
    • Sarnow, P. 2003. Viral internal ribosome entry site elements: Novel ribosome-RNA complexes and roles in viral pathogenesis. J. Virol. 77: 2801-2806.
    • (2003) J. Virol. , vol.77 , pp. 2801-2806
    • Sarnow, P.1
  • 31
    • 0032927056 scopus 로고    scopus 로고
    • Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro
    • Sasaki, J. and Nakashima, N. 1999. Translation initiation at the CUU codon is mediated by the internal ribosome entry site of an insect picorna-like virus in vitro. J. Virol. 73: 1219-1226.
    • (1999) J. Virol. , vol.73 , pp. 1219-1226
    • Sasaki, J.1    Nakashima, N.2
  • 32
    • 0034652349 scopus 로고    scopus 로고
    • Methionine-independent initiation of translation in the capsid protein of an insect RNA virus
    • -. 2000. Methionine-independent initiation of translation in the capsid protein of an insect RNA virus. Proc. Natl Acad. Sci. 97: 1512-1515.
    • (2000) Proc. Natl Acad. Sci. , vol.97 , pp. 1512-1515
  • 33
    • 0242331742 scopus 로고    scopus 로고
    • Conditional rather than absolute requirements of the capsid coding sequence for initiation of methionine-independent translation in Plautia stali intestine virus
    • Shibuya, N., Nishiyama, T., Kanamori, Y., Saito, H., and Nakashima, N. 2003. Conditional rather than absolute requirements of the capsid coding sequence for initiation of methionine-independent translation in Plautia stali intestine virus. J. Virol. 77: 12002-12010.
    • (2003) J. Virol. , vol.77 , pp. 12002-12010
    • Shibuya, N.1    Nishiyama, T.2    Kanamori, Y.3    Saito, H.4    Nakashima, N.5
  • 34
    • 0031901132 scopus 로고    scopus 로고
    • Specific interaction of eukaryotic translation initiation factor 3 with the 5′ nontranslated regions of hepatitis C virus and classical swine fever virus RNAs
    • Sizova, D.V., Kolupaeva, V.G., Pestova, T.V., Shatsky, I.N., and Hellen, C.U.T. 1998. Specific interaction of eukaryotic translation initiation factor 3 with the 5′ nontranslated regions of hepatitis C virus and classical swine fever virus RNAs. J. Virol. 72: 4775-4782.
    • (1998) J. Virol. , vol.72 , pp. 4775-4782
    • Sizova, D.V.1    Kolupaeva, V.G.2    Pestova, T.V.3    Shatsky, I.N.4    Hellen, C.U.T.5
  • 35
    • 0035831269 scopus 로고    scopus 로고
    • Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit
    • Spahn, C.M., Kieft, J.S., Grassucci, R.A., Penczek, P.A., Zhou, K., Doudna, J.A., and Frank, J. 2001. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit. Science 291: 1959-1962.
    • (2001) Science , vol.291 , pp. 1959-1962
    • Spahn, C.M.1    Kieft, J.S.2    Grassucci, R.A.3    Penczek, P.A.4    Zhou, K.5    Doudna, J.A.6    Frank, J.7
  • 36
    • 4644247805 scopus 로고    scopus 로고
    • Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: The IRES functions as an RNA-based translation factor
    • Spahn, C.M., Jan, E., Mulder, A., Grassucci, R.A., Sarnow, P., and Frank, J. 2004. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: The IRES functions as an RNA-based translation factor. Cell 118: 465-475.
    • (2004) Cell , vol.118 , pp. 465-475
    • Spahn, C.M.1    Jan, E.2    Mulder, A.3    Grassucci, R.A.4    Sarnow, P.5    Frank, J.6
  • 37
    • 2342633872 scopus 로고    scopus 로고
    • Cellular internal ribosome entry segments: Structures, trans-acting factors and regulation of gene expression
    • Stoneley, M. and Willis, A.E. 2004. Cellular internal ribosome entry segments: Structures, trans-acting factors and regulation of gene expression. Oncogene 23: 3200-3207.
    • (2004) Oncogene , vol.23 , pp. 3200-3207
    • Stoneley, M.1    Willis, A.E.2
  • 38
    • 0036894697 scopus 로고    scopus 로고
    • Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme
    • Takamoto, K., He, Q., Morris, S., Chance, M.R., and Brenowitz, M. 2002. Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme. Nat. Struct. Biol. 9: 928-933.
    • (2002) Nat. Struct. Biol. , vol.9 , pp. 928-933
    • Takamoto, K.1    He, Q.2    Morris, S.3    Chance, M.R.4    Brenowitz, M.5
  • 39
    • 0035818467 scopus 로고    scopus 로고
    • Internal initiation in Saccharomyces cerevisiae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element
    • Thompson, S.R., Gulyas, K.D., and Sarnow, P. 2001. Internal initiation in Saccharomyces cerevisiae mediated by an initiator tRNA/eIF2-independent internal ribosome entry site element. Proc. Natl. Acad. Sci. 98: 12972-12977.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 12972-12977
    • Thompson, S.R.1    Gulyas, K.D.2    Sarnow, P.3
  • 40
    • 0034764497 scopus 로고    scopus 로고
    • Irresistible IRES. Attracting the translation machinery to internal ribosome entry sites
    • Vagner, S., Galy, B., and Pyronnet, S. 2001. Irresistible IRES. Attracting the translation machinery to internal ribosome entry sites. EMBO Rep. 2: 893-898.
    • (2001) EMBO Rep. , vol.2 , pp. 893-898
    • Vagner, S.1    Galy, B.2    Pyronnet, S.3
  • 41
    • 0034682720 scopus 로고    scopus 로고
    • Initiation of protein synthesis from the A site of the ribosome
    • Wilson, J.E., Pestova, T.V., Hellen, C.U., and Sarnow, P. 2000a. Initiation of protein synthesis from the A site of the ribosome. Cell 102: 511-520.
    • (2000) Cell , vol.102 , pp. 511-520
    • Wilson, J.E.1    Pestova, T.V.2    Hellen, C.U.3    Sarnow, P.4
  • 42
    • 0033920258 scopus 로고    scopus 로고
    • Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites
    • Wilson, J.E., Powell, M.J., Hoover, S.E., and Sarnow, P. 2000b. Naturally occurring dicistronic cricket paralysis virus RNA is regulated by two internal ribosome entry sites. Mol. Cell Biol. 20: 4990-4999.
    • (2000) Mol. Cell Biol. , vol.20 , pp. 4990-4999
    • Wilson, J.E.1    Powell, M.J.2    Hoover, S.E.3    Sarnow, P.4
  • 43
    • 0038064178 scopus 로고    scopus 로고
    • The zipper model of translational control: A small upstream ORF is the switch that controls structural remodeling of an mRNA leader
    • Yaman, I., Fernandez, J., Liu, H., Caprara, M., Komar, A.A., Koromilas, A.E., Zhou, L., Snider, M.D., Scheuner, D., Kaufman, R.J., et al. 2003. The zipper model of translational control: A small upstream ORF is the switch that controls structural remodeling of an mRNA leader. Cell 113: 519-531.
    • (2003) Cell , vol.113 , pp. 519-531
    • Yaman, I.1    Fernandez, J.2    Liu, H.3    Caprara, M.4    Komar, A.A.5    Koromilas, A.E.6    Zhou, L.7    Snider, M.D.8    Scheuner, D.9    Kaufman, R.J.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.