메뉴 건너뛰기




Volumn 71, Issue 10, 1997, Pages 7345-7352

Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENETIC CONSERVATION; HEPATITIS C VIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA SEQUENCE; RNA SYNTHESIS; VIRUS GENE;

EID: 0030823630     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.71.10.7345-7352.1997     Document Type: Article
Times cited : (174)

References (49)
  • 1
    • 0029166747 scopus 로고
    • Interaction of polypyrimidine tract-binding protein with the 5′ noncoding region of the hepatitis C virus RNA genome and its functional requirement in internal initiation of translation
    • Ali, N., and A. Siddiqui. 1995. Interaction of polypyrimidine tract-binding protein with the 5′ noncoding region of the hepatitis C virus RNA genome and its functional requirement in internal initiation of translation. J. Virol. 69:6367-6375.
    • (1995) J. Virol. , vol.69 , pp. 6367-6375
    • Ali, N.1    Siddiqui, A.2
  • 2
    • 0028155935 scopus 로고
    • Specific RNA binding by amino-terminal peptides of alfalfa mosaic virus coat protein
    • Baer, M. L., F. Houser, L. S. Loesch-Fries, and L. Gehrke. 1994. Specific RNA binding by amino-terminal peptides of alfalfa mosaic virus coat protein. EMBO J. 13:727-735.
    • (1994) EMBO J. , vol.13 , pp. 727-735
    • Baer, M.L.1    Houser, F.2    Loesch-Fries, L.S.3    Gehrke, L.4
  • 3
    • 0028857217 scopus 로고
    • Requirements for the self-directed replication of flock house virus RNA 1
    • Ball, L. A. 1995. Requirements for the self-directed replication of flock house virus RNA 1. J. Virol 69:720-727.
    • (1995) J. Virol , vol.69 , pp. 720-727
    • Ball, L.A.1
  • 4
    • 0027273331 scopus 로고
    • Cis-acting requirements for the replication of flock house virus RNA 2
    • Ball, L. A., and Y. Li. 1993. cis-acting requirements for the replication of flock house virus RNA 2. J. Virol. 67:3544-3551.
    • (1993) J. Virol. , vol.67 , pp. 3544-3551
    • Ball, L.A.1    Li, Y.2
  • 5
    • 0029149642 scopus 로고
    • BHK cell proteins that bind to the 3′ stem-loop structure of the West Nile virus genome RNA
    • Blackwell, J. L., and M. A. Brinton. 1995. BHK cell proteins that bind to the 3′ stem-loop structure of the West Nile virus genome RNA. J. Virol. 69: 5650-5658.
    • (1995) J. Virol. , vol.69 , pp. 5650-5658
    • Blackwell, J.L.1    Brinton, M.A.2
  • 6
    • 0019320775 scopus 로고
    • Identification of a cytidine-specific ribonuclease from chicken liver
    • Boguski, M. S., P. A. Hieter, and C. C. Levy. 1980. Identification of a cytidine-specific ribonuclease from chicken liver. J. Biol. Chem. 255:2160-2163.
    • (1980) J. Biol. Chem. , vol.255 , pp. 2160-2163
    • Boguski, M.S.1    Hieter, P.A.2    Levy, C.C.3
  • 7
    • 0024232285 scopus 로고
    • Enzymatic and chemical probing of ribosomal RNA-protein interactions
    • Christiansen, J., and R. Garrett. 1988. Enzymatic and chemical probing of ribosomal RNA-protein interactions. Methods Enzymol. 164:456-468.
    • (1988) Methods Enzymol. , vol.164 , pp. 456-468
    • Christiansen, J.1    Garrett, R.2
  • 8
    • 0025221408 scopus 로고
    • The HIV-1 tat protein: An RNA sequence-specific processivity factor?
    • Cullen, B. R. 1990. The HIV-1 tat protein: an RNA sequence-specific processivity factor? Cell 63:655-657.
    • (1990) Cell , vol.63 , pp. 655-657
    • Cullen, B.R.1
  • 9
    • 0026659853 scopus 로고
    • Conservation of RNA-protein interactions among picornaviruses
    • Dildine, S. L., and B. L. Semler. 1992. Conservation of RNA-protein interactions among picornaviruses. J. Virol. 66:4364-4376.
    • (1992) J. Virol. , vol.66 , pp. 4364-4376
    • Dildine, S.L.1    Semler, B.L.2
  • 10
    • 0018120558 scopus 로고
    • 3′-terminal labelling of RNA with T4 RNA ligase
    • England, T. E., and O. C. Uhlenbeck. 1978. 3′-terminal labelling of RNA with T4 RNA ligase. Nature 275:560-561.
    • (1978) Nature , vol.275 , pp. 560-561
    • England, T.E.1    Uhlenbeck, O.C.2
  • 11
    • 0027017129 scopus 로고
    • Hepatitis C: Molecular biology, pathogenesis, epidemiology, clinical features and prevention
    • J. L. Boyer and R. K. Ockner (ed.). W. B. Saunders, Philadelphia, Pa.
    • Esteban, J. I., J. Genescá, and H. J. Alter. 1992. Hepatitis C: molecular biology, pathogenesis, epidemiology, clinical features and prevention, p. 253-282. In J. L. Boyer and R. K. Ockner (ed.), Progress in liver diseases. W. B. Saunders, Philadelphia, Pa.
    • (1992) Progress in Liver Diseases , pp. 253-282
    • Esteban, J.I.1    Genescá, J.2    Alter, H.J.3
  • 12
    • 0000357440 scopus 로고
    • Classification and nomenclature of viruses: Fifth report of the international committee on taxonomy of viruses
    • Francki, R. I. B., C. M. Fauquet, D. L. Knudson, and F. Brown. 1991. Classification and nomenclature of viruses: fifth report of the international committee on taxonomy of viruses. Arch. Virol. Suppl. 2:223.
    • (1991) Arch. Virol. Suppl. , vol.2 , pp. 223
    • Francki, R.I.B.1    Fauquet, C.M.2    Knudson, D.L.3    Brown, F.4
  • 13
    • 0027424014 scopus 로고
    • Three different cellular proteins bind to complementary sites on the 5′-end-positive and 3′-end-negative strands of mouse hepatitis virus RNA
    • Furuya, T., and M. M. C. Lai. 1993. Three different cellular proteins bind to complementary sites on the 5′-end-positive and 3′-end-negative strands of mouse hepatitis virus RNA. J. Virol. 67:7215-7222.
    • (1993) J. Virol. , vol.67 , pp. 7215-7222
    • Furuya, T.1    Lai, M.M.C.2
  • 14
    • 0029949695 scopus 로고    scopus 로고
    • Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA
    • Honda, M., E. A. Brown, and S. M. Lemon. 1996. Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA. RNA 2:955-968.
    • (1996) RNA , vol.2 , pp. 955-968
    • Honda, M.1    Brown, E.A.2    Lemon, S.M.3
  • 15
    • 0030219426 scopus 로고    scopus 로고
    • Structural requirements for initiation of translation by internal ribosome entry within genome-length hepatitis C virus RNA
    • Honda, M., L.-H. Ping, R. C. A. Rijnbrand, E. Amphlett, B. Clarke, D. Rowlands, and S. M. Lemon. 1996. Structural requirements for initiation of translation by internal ribosome entry within genome-length hepatitis C virus RNA. Virology 222:31-12.
    • (1996) Virology , vol.222 , pp. 31-112
    • Honda, M.1    Ping, L.-H.2    Rijnbrand, R.C.A.3    Amphlett, E.4    Clarke, B.5    Rowlands, D.6    Lemon, S.M.7
  • 16
    • 0000361013 scopus 로고    scopus 로고
    • Hepatitis C viruses
    • B. N. Fields, D. M. Knipe, and P. M. Howley (ed.). Raven Press, Philadelphia, Pa.
    • Houghton, M. 1996. Hepatitis C viruses, p. 1035-1058. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology. Raven Press, Philadelphia, Pa.
    • (1996) Fields Virology , pp. 1035-1058
    • Houghton, M.1
  • 17
    • 0027229229 scopus 로고
    • Biochemical and genetic evidence for a pseudoknot structure at the 3′ terminus of the poliovirus RNA genome and its role in viral RNA amplification
    • Jacobson, S. J., D. A. M. Konings, and P. Sarnow. 1993. Biochemical and genetic evidence for a pseudoknot structure at the 3′ terminus of the poliovirus RNA genome and its role in viral RNA amplification. J. Virol. 67:2961-2971.
    • (1993) J. Virol. , vol.67 , pp. 2961-2971
    • Jacobson, S.J.1    Konings, D.A.M.2    Sarnow, P.3
  • 18
    • 0345005029 scopus 로고
    • Improved predictions of secondary structures for RNA
    • Jaeger, J. A., D. H. Turner, and M. Zuker. 1989. Improved predictions of secondary structures for RNA. Proc. Natl. Acad. Sci. USA 86:7706-7710.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 7706-7710
    • Jaeger, J.A.1    Turner, D.H.2    Zuker, M.3
  • 19
    • 0002627304 scopus 로고
    • Control of human immunodeficiency virus gene expression by the RNA-binding proteins tat and rev
    • K. Nagai and I. W. Mattaj (ed.). IRL Press, Oxford, England
    • Karn J., M. J. Gait, M. J. Churcher, D. A. Mann, I. Mikaélian, and C. Pritchard. 1994. Control of human immunodeficiency virus gene expression by the RNA-binding proteins tat and rev, p. 192-220. In K. Nagai and I. W. Mattaj (ed.), RNA-protein interactions. IRL Press, Oxford, England.
    • (1994) RNA-protein Interactions , pp. 192-220
    • Karn, J.1    Gait, M.J.2    Churcher, M.J.3    Mann, D.A.4    Mikaélian, I.5    Pritchard, C.6
  • 21
    • 0029938477 scopus 로고    scopus 로고
    • Identification of a highly conserved sequence element at the 3′ terminus of hepatitis C virus genome RNA
    • Kolykhalov, A. A., S. M. Feinstone, and C. M. Rice. 1996. Identification of a highly conserved sequence element at the 3′ terminus of hepatitis C virus genome RNA. J. Virol. 70:3363-3371.
    • (1996) J. Virol. , vol.70 , pp. 3363-3371
    • Kolykhalov, A.A.1    Feinstone, S.M.2    Rice, C.M.3
  • 22
    • 0027518528 scopus 로고
    • Cell proteins bind to sites within the 3′ noncoding region and the positive-strand leader sequence of measles virus RNA
    • Leopardi, R., V. Hukkanen, R. Vainionpää, and A. A. Salmi. 1993. Cell proteins bind to sites within the 3′ noncoding region and the positive-strand leader sequence of measles virus RNA. J. Virol. 67:785-790.
    • (1993) J. Virol. , vol.67 , pp. 785-790
    • Leopardi, R.1    Hukkanen, V.2    Vainionpää, R.3    Salmi, A.A.4
  • 23
    • 0022973884 scopus 로고
    • On the recognition of helical RNA by cobra venom VI nuclease
    • Lowman, H. B., and D. E. Draper. 1986. On the recognition of helical RNA by cobra venom VI nuclease. J. Biol. Chem. 261:5396-5403.
    • (1986) J. Biol. Chem. , vol.261 , pp. 5396-5403
    • Lowman, H.B.1    Draper, D.E.2
  • 24
    • 0027315727 scopus 로고
    • RNA recognition: A family matter?
    • Mattaj, I. W. 1993. RNA recognition: a family matter? Cell 73:837-840.
    • (1993) Cell , vol.73 , pp. 837-840
    • Mattaj, I.W.1
  • 25
    • 0031060472 scopus 로고    scopus 로고
    • Kissing of the two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis
    • Melchers, W. J. G., J. G. J. Hoenderop, H. J. Bruins Slot, C. W. A. Pleij, E. V. Pilipenko, V. I. Agol, and J. M. D. Galama. 1997. Kissing of the two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis. J. Virol. 71:686-696.
    • (1997) J. Virol. , vol.71 , pp. 686-696
    • Melchers, W.J.G.1    Hoenderop, J.G.J.2    Bruins Slot, H.J.3    Pleij, C.W.A.4    Pilipenko, E.V.5    Agol, V.I.6    Galama, J.M.D.7
  • 26
    • 0025930801 scopus 로고
    • Specific binding of host cell proteins to the 3′-terminal stem-loop structure of rubella virus negative-strand RNA
    • Nakhasi, H. L., X.-Q. Cao, T. A. Rouault, and T.-Y. Liu. 1991. Specific binding of host cell proteins to the 3′-terminal stem-loop structure of rubella virus negative-strand RNA. J. Virol. 65:5961-5967.
    • (1991) J. Virol. , vol.65 , pp. 5961-5967
    • Nakhasi, H.L.1    Cao, X.-Q.2    Rouault, T.A.3    Liu, T.-Y.4
  • 27
    • 0025352499 scopus 로고
    • Specific high-affinity binding of host cell proteins to the 3′ region of rubella virus RNA
    • Nakhasi, H. L., T. A. Rouault, D. J. Haile, T.-Y. Liu, and R. D. Klausner. 1990. Specific high-affinity binding of host cell proteins to the 3′ region of rubella virus RNA. New Biol. 2:255-264.
    • (1990) New Biol. , vol.2 , pp. 255-264
    • Nakhasi, H.L.1    Rouault, T.A.2    Haile, D.J.3    Liu, T.-Y.4    Klausner, R.D.5
  • 28
    • 0028068073 scopus 로고
    • Cis-acting signals and trans-acting factors involved in influenza virus RNA synthesis
    • O'Neill, R. E., and P. Palese. 1994. Cis-acting signals and trans-acting factors involved in influenza virus RNA synthesis. Infect. Agents Dis. 3:77-84.
    • (1994) Infect. Agents Dis. , vol.3 , pp. 77-84
    • O'Neill, R.E.1    Palese, P.2
  • 29
    • 0027255003 scopus 로고
    • Multiple binding sites for cellular proteins in the 3′ end of Sindbis alphavirus minus-sense RNA
    • Pardigon, N., E. Lenches, and J. H. Strauss. 1993. Multiple binding sites for cellular proteins in the 3′ end of Sindbis alphavirus minus-sense RNA. J. Virol. 67:5003-5011.
    • (1993) J. Virol. , vol.67 , pp. 5003-5011
    • Pardigon, N.1    Lenches, E.2    Strauss, J.H.3
  • 30
    • 0030060397 scopus 로고    scopus 로고
    • Mosquito homolog of the La autoantigen binds to Sindbis virus RNA
    • Pardigon, N., and J. H. Strauss. 1996. Mosquito homolog of the La autoantigen binds to Sindbis virus RNA. J. Virol. 70:1173-1181.
    • (1996) J. Virol. , vol.70 , pp. 1173-1181
    • Pardigon, N.1    Strauss, J.H.2
  • 31
    • 0028850828 scopus 로고
    • The termini of VSV DI particle RNAs are sufficient to signal RNA encapsidation, replication, and budding to generate infectious particles
    • Pattnaik, A. K., L. A. Ball, A. LeGrone, and G. W. Wertz. 1995. The termini of VSV DI particle RNAs are sufficient to signal RNA encapsidation, replication, and budding to generate infectious particles. Virology 206:760-764.
    • (1995) Virology , vol.206 , pp. 760-764
    • Pattnaik, A.K.1    Ball, L.A.2    LeGrone, A.3    Wertz, G.W.4
  • 32
    • 0029838843 scopus 로고    scopus 로고
    • Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: A quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions
    • Pilipenko, E. V., K. V. Poperechny, S. V. Maslova, W. J. G. Melchers, H. J. Bruins Slot, and V. I. Agol. 1996. Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: a quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions. EMBO J. 15:5428-5436.
    • (1996) EMBO J. , vol.15 , pp. 5428-5436
    • Pilipenko, E.V.1    Poperechny, K.V.2    Maslova, S.V.3    Melchers, W.J.G.4    Bruins Slot, H.J.5    Agol, V.I.6
  • 33
    • 0027332585 scopus 로고
    • 5′ sequences of rubella virus RNA stimulate translation of chimeric RNAs and specifically interact with two host-encoded proteins
    • Pogue, G. P., X. Q. Cao, N. K. Singh, and H. L. Nakhasi. 1993. 5′ sequences of rubella virus RNA stimulate translation of chimeric RNAs and specifically interact with two host-encoded proteins. J. Virol. 67:7106-7117.
    • (1993) J. Virol. , vol.67 , pp. 7106-7117
    • Pogue, G.P.1    Cao, X.Q.2    Singh, N.K.3    Nakhasi, H.L.4
  • 34
    • 0001424128 scopus 로고    scopus 로고
    • Flaviviridae: The viruses and their replication
    • B. N. Fields, D. M. Knipe, and P. M. Howley (ed.). Raven Press, Philadelphia, Pa.
    • Rice, C. M. 1996. Flaviviridae: the viruses and their replication, p. 931-960. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology. Raven Press, Philadelphia, Pa.
    • (1996) Fields Virology , pp. 931-960
    • Rice, C.M.1
  • 36
    • 9444225980 scopus 로고    scopus 로고
    • Cell proteins bind specifically to West Nile virus minus-strand 3′ stem-loop RNA
    • Shi, P.-Y., W. Li, and M. A. Brinton. 1996. Cell proteins bind specifically to West Nile virus minus-strand 3′ stem-loop RNA. J. Virol 70:6278-6287.
    • (1996) J. Virol , vol.70 , pp. 6278-6287
    • Shi, P.-Y.1    Li, W.2    Brinton, M.A.3
  • 38
    • 0028606112 scopus 로고
    • Identification of calreticulin as a rubella virus RNA binding protein
    • Singh, N. K., C. D. Atreya, and H. L. Nakhasi. 1994. Identification of calreticulin as a rubella virus RNA binding protein. Proc. Natl. Acad. Sci. USA 91:12770-12774.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 12770-12774
    • Singh, N.K.1    Atreya, C.D.2    Nakhasi, H.L.3
  • 39
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • Stern, S., D. Moazed, and H. F. Noller. 1988. Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol. 164:481-489.
    • (1988) Methods Enzymol. , vol.164 , pp. 481-489
    • Stern, S.1    Moazed, D.2    Noller, H.F.3
  • 41
    • 0028088152 scopus 로고
    • The alphaviruses: Gene expression, replication, evolution
    • Strauss, J. H., and E. G. Strauss. 1994. The alphaviruses: gene expression, replication, evolution. Microbiol. Rev. 58:491-562.
    • (1994) Microbiol. Rev. , vol.58 , pp. 491-562
    • Strauss, J.H.1    Strauss, E.G.2
  • 42
    • 0028785460 scopus 로고
    • A novel sequence found at the 3′ terminus of hepatitis C virus genome
    • Tanaka, T., N. Kato, M.-J. Cho, and K. Shimotohno. 1995. A novel sequence found at the 3′ terminus of hepatitis C virus genome. Biochem. Biophys. Res. Commun. 215:744-749.
    • (1995) Biochem. Biophys. Res. Commun. , vol.215 , pp. 744-749
    • Tanaka, T.1    Kato, N.2    Cho, M.-J.3    Shimotohno, K.4
  • 43
    • 0029927642 scopus 로고    scopus 로고
    • Structure of the 3′ terminus of the hepatitis C virus genome
    • Tanaka, T., N. Kato, M.-J. Cho, K. Sugiyama, and K. Shimotohno. 1996. Structure of the 3′ terminus of the hepatitis C virus genome. J. Virol. 70: 3307-3312.
    • (1996) J. Virol. , vol.70 , pp. 3307-3312
    • Tanaka, T.1    Kato, N.2    Cho, M.-J.3    Sugiyama, K.4    Shimotohno, K.5
  • 44
    • 0029060743 scopus 로고
    • RNA-protein interactions directed by the 3′ end of human rhinovirus genomic RNA
    • Todd, S., J. H. C. Nguyen, and B. L. Semler. 1995. RNA-protein interactions directed by the 3′ end of human rhinovirus genomic RNA. J. Virol. 69:3605-3614.
    • (1995) J. Virol. , vol.69 , pp. 3605-3614
    • Todd, S.1    Nguyen, J.H.C.2    Semler, B.L.3
  • 45
    • 0029117158 scopus 로고
    • Cleavage of tRNA with imidazole and spermine imidazole constructs: A new approach for probing RNA structure
    • Vlassov, V. V., G. Zuber, B. Felden, J.-P. Behr, and R. Giegé. 1995. Cleavage of tRNA with imidazole and spermine imidazole constructs: a new approach for probing RNA structure. Nucleic Acids Res. 23:3161-3167.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3161-3167
    • Vlassov, V.V.1    Zuber, G.2    Felden, B.3    Behr, J.-P.4    Giegé, R.5
  • 46
    • 0029331431 scopus 로고
    • An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5′ noncoding region
    • Wang, C., S.-Y. Le, N. Ali, and A. Siddiqui. 1995. An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5′ noncoding region. RNA 1:526-537.
    • (1995) RNA , vol.1 , pp. 526-537
    • Wang, C.1    Le, S.-Y.2    Ali, N.3    Siddiqui, A.4
  • 47
    • 0029143143 scopus 로고
    • Structure and function of the hepatitis C virus internal ribosome entry site
    • Wang, C., and A. Siddiqui. 1995. Structure and function of the hepatitis C virus internal ribosome entry site. Curr. Top. Microbiol. Immunol. 203:99-115.
    • (1995) Curr. Top. Microbiol. Immunol. , vol.203 , pp. 99-115
    • Wang, C.1    Siddiqui, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.