메뉴 건너뛰기




Volumn 71, Issue 11, 1997, Pages 8698-8706

Determination of the secondary structure of and cellular protein binding to the 3'-untranslated region of the hepatitis C virus RNA genome

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BINDING AFFINITY; BINDING SITE; CONSENSUS SEQUENCE; CROSS LINKING; HEPATITIS C VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; RNA REPLICATION; RNA STRUCTURE; RNA SYNTHESIS; RNA TRANSLATION; SITE DIRECTED MUTAGENESIS; VIRUS GENOME;

EID: 0030812847     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.71.11.8698-8706.1997     Document Type: Article
Times cited : (163)

References (40)
  • 1
    • 0029166747 scopus 로고
    • Interaction of polypyrimidine tract-binding protein with the 5′ noncoding region of hepatitis C virus RNA genome and its functional requirement in internal initiation of translation
    • Ali, N., and A. Siddiqui. 1995. Interaction of polypyrimidine tract-binding protein with the 5′ noncoding region of hepatitis C virus RNA genome and its functional requirement in internal initiation of translation. J. Virol. 69: 6367-6375.
    • (1995) J. Virol. , vol.69 , pp. 6367-6375
    • Ali, N.1    Siddiqui, A.2
  • 2
    • 0026728652 scopus 로고
    • Sequence analysis of the 5′ noncoding region of hepatitis C virus
    • Bukh, J., R. H. Purcell, and R. H. Miller. 1992. Sequence analysis of the 5′ noncoding region of hepatitis C virus. Proc. Natl. Acad. Sci. USA 89:4942-4946.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 4942-4946
    • Bukh, J.1    Purcell, R.H.2    Miller, R.H.3
  • 3
    • 0028945033 scopus 로고
    • Genetic heterogeneity of hepatitis C virus: Quasispecies and genotypes
    • Bukh, J., R. H. Miller, and R. H. Purcell. 1995. Genetic heterogeneity of hepatitis C virus: quasispecies and genotypes. Semin. Liver Dis. 15:41-63.
    • (1995) Semin. Liver Dis. , vol.15 , pp. 41-63
    • Bukh, J.1    Miller, R.H.2    Purcell, R.H.3
  • 5
    • 0024509701 scopus 로고
    • Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
    • Choo, Q.-L., G. Kuo, A. J. Weiner, L. R. Overby, D. W. Bradley, and M. Houghton. 1989. Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359-362.
    • (1989) Science , vol.244 , pp. 359-362
    • Choo, Q.-L.1    Kuo, G.2    Weiner, A.J.3    Overby, L.R.4    Bradley, D.W.5    Houghton, M.6
  • 6
    • 0027256025 scopus 로고
    • The 3′ untranslated region of satellite tobacco necrosis virus RNA stimulates translation in vitro
    • Danthinne, X., J. Seurinck, F. Meulewaeter, M. van Montagu, and M. Cornelissen. 1993. The 3′ untranslated region of satellite tobacco necrosis virus RNA stimulates translation in vitro. Mol. Cell. Biol. 13:3340-3349.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 3340-3349
    • Danthinne, X.1    Seurinck, J.2    Meulewaeter, F.3    Van Montagu, M.4    Cornelissen, M.5
  • 7
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a solution extract from isolated mammalian nuclei
    • Dignam, J. D., R. M. Lebovitz, and R. G. Roeder. 1983. Accurate transcription initiation by RNA polymerase II in a solution extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1475-1489.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 8
    • 0027212498 scopus 로고
    • Solubilization and purification of enzymatically active glutathione S-transferase (pGEX) fusion proteins
    • Frangioni, J. V., and B. G. Neel. 1993. Solubilization and purification of enzymatically active glutathione S-transferase (pGEX) fusion proteins. Anal. Biochem. 210:179-187.
    • (1993) Anal. Biochem. , vol.210 , pp. 179-187
    • Frangioni, J.V.1    Neel, B.G.2
  • 9
    • 0027424014 scopus 로고
    • Three different cellular proteins bind to complementary sites on the 5′-end-positive and 3′-end-negative strands of mouse hepatitis virus RNA
    • Furuya, T., and M. M. C. Lai. 1993. Three different cellular proteins bind to complementary sites on the 5′-end-positive and 3′-end-negative strands of mouse hepatitis virus RNA. J. Virol. 67:7215-7222.
    • (1993) J. Virol. , vol.67 , pp. 7215-7222
    • Furuya, T.1    Lai, M.M.C.2
  • 10
    • 0026660025 scopus 로고
    • hnRNP I, polypyrimidine tract-binding protein: Distinct nuclear localization and association with hnRNAs
    • Ghetti, A., S. Pinol-Roma, W. M. Michael, C. Morandi, and G. Dreyfuss. 1992. hnRNP I, polypyrimidine tract-binding protein: distinct nuclear localization and association with hnRNAs. Nucleic Acids Res. 20:3671-3678.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 3671-3678
    • Ghetti, A.1    Pinol-Roma, S.2    Michael, W.M.3    Morandi, C.4    Dreyfuss, G.5
  • 11
    • 0026071871 scopus 로고
    • Characterization of the terminal regions of hepatitis C viral RNA: Identification of conserved sequences in the 5′ untranslated region and poly(A) tails at the 3′-end
    • Han, J. H., V. Shyamala, K. H. Richman, M. J. Brauer, B. Irvine, M. S. Urdea, P. Tekamp-Olson, G. Kuo, Q.-L. Choo, and M. Houghton. 1991. Characterization of the terminal regions of hepatitis C viral RNA: Identification of conserved sequences in the 5′ untranslated region and poly(A) tails at the 3′-end. Proc. Natl. Acad. Sci. USA 88:1711-1715.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 1711-1715
    • Han, J.H.1    Shyamala, V.2    Richman, K.H.3    Brauer, M.J.4    Irvine, B.5    Urdea, M.S.6    Tekamp-Olson, P.7    Kuo, G.8    Choo, Q.-L.9    Houghton, M.10
  • 12
    • 0028120914 scopus 로고
    • The cellular polypeptide p57 (pyrimidine tract-binding protein) binds to multiple sites in the poliovirus 5′ nontranslated region
    • Hellen, C. U. T., T. V. Pestova, M. Litterst, and E. Wimmer. 1994. The cellular polypeptide p57 (pyrimidine tract-binding protein) binds to multiple sites in the poliovirus 5′ nontranslated region. J. Virol. 68:941-950.
    • (1994) J. Virol. , vol.68 , pp. 941-950
    • Hellen, C.U.T.1    Pestova, T.V.2    Litterst, M.3    Wimmer, E.4
  • 13
    • 0027172207 scopus 로고
    • A cytoplasmic 57 kDa protein that is required for translation of picornavirus RNA by internal ribosomal entry is identical to the nuclear pyrimidine tract-binding protein
    • Hellen, C. U. T., G. W. Witherell, M. Schmid, S. H. Shin, T. V. Pestova, A. Gil, and E. Wimmer. 1993. A cytoplasmic 57 kDa protein that is required for translation of picornavirus RNA by internal ribosomal entry is identical to the nuclear pyrimidine tract-binding protein. Proc. Natl. Acad. Sci. USA 90:7642-7646.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7642-7646
    • Hellen, C.U.T.1    Witherell, G.W.2    Schmid, M.3    Shin, S.H.4    Pestova, T.V.5    Gil, A.6    Wimmer, E.7
  • 14
    • 0029972796 scopus 로고    scopus 로고
    • Cultivation of hepatitis C virus in primary hepatocyte culture from patients with chronic hepatitis C results in release of high titre infectious virus
    • Ho, T., J. Mukaigawa, J. Zuo, Y. Hirabayashi, K. Mitamura, and K. Yasui. 1996. Cultivation of hepatitis C virus in primary hepatocyte culture from patients with chronic hepatitis C results in release of high titre infectious virus. J. Gen. Virol. 77:1043-1054.
    • (1996) J. Gen. Virol. , vol.77 , pp. 1043-1054
    • Ho, T.1    Mukaigawa, J.2    Zuo, J.3    Hirabayashi, Y.4    Mitamura, K.5    Yasui, K.6
  • 15
    • 0027229229 scopus 로고
    • Biochemical and genetic evidence for a pseudoknot structure at the 3′ terminus of the poliovirus RNA genome and its role in viral RNA amplification
    • Jacobson, S. J., D. A. M. Konings, and P. Sarnow. 1993. Biochemical and genetic evidence for a pseudoknot structure at the 3′ terminus of the poliovirus RNA genome and its role in viral RNA amplification. J. Virol 67:2961-2971.
    • (1993) J. Virol , vol.67 , pp. 2961-2971
    • Jacobson, S.J.1    Konings, D.A.M.2    Sarnow, P.3
  • 16
    • 0029397360 scopus 로고
    • Direct evidence that polypyrimidine tract binding protein (PTB) is essential for internal initiation of translation of encephalomyocarditis virus RNA
    • Kaminski, A., S. L. Hunt, J. G. Patton, and R. J. Jackson. 1995. Direct evidence that polypyrimidine tract binding protein (PTB) is essential for internal initiation of translation of encephalomyocarditis virus RNA. RNA 1:924-938.
    • (1995) RNA , vol.1 , pp. 924-938
    • Kaminski, A.1    Hunt, S.L.2    Patton, J.G.3    Jackson, R.J.4
  • 18
    • 0029938477 scopus 로고    scopus 로고
    • Identification of a highly conserved sequence element at the 3′ terminus of hepatitis C virus genome RNA
    • Kolykhalov, A. A., S. M. Feinstone, and C. M. Rice. 1996. Identification of a highly conserved sequence element at the 3′ terminus of hepatitis C virus genome RNA. J. Virol. 70:3363-3371.
    • (1996) J. Virol. , vol.70 , pp. 3363-3371
    • Kolykhalov, A.A.1    Feinstone, S.M.2    Rice, C.M.3
  • 19
    • 0027493492 scopus 로고
    • Binding of a phosphoprotein to the 3′ untranslated region of the mouse protamine 2 mRNA temporally represses its translation
    • Kwon, Y. K., and N. B. Hecht. 1993. Binding of a phosphoprotein to the 3′ untranslated region of the mouse protamine 2 mRNA temporally represses its translation. Mol. Cell. Biol. 13:6547-6557.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 6547-6557
    • Kwon, Y.K.1    Hecht, N.B.2
  • 20
    • 0027294694 scopus 로고
    • Contributions of the brome mosaic virus RNA-3 3′-nontranslated region to replication and translation
    • Lahser, F. C., L. E. Marsh, and T. C. Hall. 1993. Contributions of the brome mosaic virus RNA-3 3′-nontranslated region to replication and translation J. Virol. 67:3295-3303.
    • (1993) J. Virol. , vol.67 , pp. 3295-3303
    • Lahser, F.C.1    Marsh, L.E.2    Hall, T.C.3
  • 21
    • 0028290389 scopus 로고
    • Processing in the hepatitis C virus E2-NS2 region: Identification of p7 and two distinct E2-specific products with different C termini
    • Lin, C., B. D. Lindenbach, B. M. Pragai, D. W. McCourt, and C. M. Rice. 1994. Processing in the hepatitis C virus E2-NS2 region: identification of p7 and two distinct E2-specific products with different C termini. J. Virol. 68:5063-5073.
    • (1994) J. Virol. , vol.68 , pp. 5063-5073
    • Lin, C.1    Lindenbach, B.D.2    Pragai, B.M.3    McCourt, D.W.4    Rice, C.M.5
  • 22
    • 0026093588 scopus 로고
    • The polyadenylation signal of influenza virus RNA involves a stretch of uridines followed by the RNA duplex of the panhandle structure
    • Luo, G., W. Luytjes, M. Enami, and P. Palese. 1991. The polyadenylation signal of influenza virus RNA involves a stretch of uridines followed by the RNA duplex of the panhandle structure. J. Virol. 65:2861-2867.
    • (1991) J. Virol. , vol.65 , pp. 2861-2867
    • Luo, G.1    Luytjes, W.2    Enami, M.3    Palese, P.4
  • 23
    • 0031060472 scopus 로고    scopus 로고
    • Kissing of the two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis
    • Melchers, W. J. G., J. G. J. Hoenderop, H. J. B. Slot, C. W. A. Pleij, E. V. Pilipenko, V. I. Agol, and J. M. D. Galama. 1997. Kissing of the two predominant hairpin loops in the coxsackie B virus 3′ untranslated region is the essential structural feature of the origin of replication required for negative-strand RNA synthesis. J. Virol. 71:686-696.
    • (1997) J. Virol. , vol.71 , pp. 686-696
    • Melchers, W.J.G.1    Hoenderop, J.G.J.2    Slot, H.J.B.3    Pleij, C.W.A.4    Pilipenko, E.V.5    Agol, V.I.6    Galama, J.M.D.7
  • 24
    • 0026751054 scopus 로고
    • Full-length sequence of a hepatitis C virus genome having poor homology to reported isolates: Comparative study of four distinct genotypes
    • Okamoto, H., K. Kurai, S. I. Okada, K. Yamamoto, H. Lizuka, T. Tanaka, S. Fukuda, F. Tsuda, and S. Mishiro. 1992. Full-length sequence of a hepatitis C virus genome having poor homology to reported isolates: comparative study of four distinct genotypes. Virology 188:331-341.
    • (1992) Virology , vol.188 , pp. 331-341
    • Okamoto, H.1    Kurai, K.2    Okada, S.I.3    Yamamoto, K.4    Lizuka, H.5    Tanaka, T.6    Fukuda, S.7    Tsuda, F.8    Mishiro, S.9
  • 25
    • 0025856790 scopus 로고
    • Characterization and molecular cloning of polypyrimidine tract-binding protein: A component of a complex necessary for pre-mRNA splicing
    • Patton, J. G., S. A. Mayer, P. Tempst, and B. Nadal-Ginard. 1991. Characterization and molecular cloning of polypyrimidine tract-binding protein: a component of a complex necessary for pre-mRNA splicing. Genes Dev. 5:1237-1251.
    • (1991) Genes Dev. , vol.5 , pp. 1237-1251
    • Patton, J.G.1    Mayer, S.A.2    Tempst, P.3    Nadal-Ginard, B.4
  • 26
    • 0029838843 scopus 로고    scopus 로고
    • Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: A quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions
    • Philipenko, E. V., K. V. Poperechny, S. V. Maslova, W. J. G. Melchers, H. J. B. Slot, and V. I. Agol. 1996. Cis-element, oriR, involved in the initiation of (-) strand poliovirus RNA: a quasi-globular multi-domain RNA structure maintained by tertiary ('kissing') interactions. EMBO J. 15:5428-5436.
    • (1996) EMBO J. , vol.15 , pp. 5428-5436
    • Philipenko, E.V.1    Poperechny, K.V.2    Maslova, S.V.3    Melchers, W.J.G.4    Slot, H.J.B.5    Agol, V.I.6
  • 28
    • 0021863828 scopus 로고
    • Nucleotide sequence of yellow fever virus: Implication for flavivirus gene expression and evolution
    • Rice, C. M., E. M. Lenches, S. R. Eddy, S. J. Shin, R. L. Sheets, and J. H. Strauss. 1985. Nucleotide sequence of yellow fever virus: implication for flavivirus gene expression and evolution. Science 229:726-735.
    • (1985) Science , vol.229 , pp. 726-735
    • Rice, C.M.1    Lenches, E.M.2    Eddy, S.R.3    Shin, S.J.4    Sheets, R.L.5    Strauss, J.H.6
  • 31
    • 0029055472 scopus 로고
    • Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins
    • Singh, R., J. Valcárcel, and M. R. Green. 1995. Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science 268:1173-1176.
    • (1995) Science , vol.268 , pp. 1173-1176
    • Singh, R.1    Valcárcel, J.2    Green, M.R.3
  • 32
    • 0029927642 scopus 로고    scopus 로고
    • Structure of the 3′ terminus of the hepatitis C virus genome
    • Tanaka, T., N. Kato, M.-J. Cho, K. Sugiyama, and K. Shimotohno. 1996. Structure of the 3′ terminus of the hepatitis C virus genome. J. Virol. 70:3307-3312.
    • (1996) J. Virol. , vol.70 , pp. 3307-3312
    • Tanaka, T.1    Kato, N.2    Cho, M.-J.3    Sugiyama, K.4    Shimotohno, K.5
  • 33
    • 0028122443 scopus 로고
    • Extent of terminal complementarity modulates the balance between transcription and replication of vesicular stomatitis virus RNA
    • Wertz, G. W., S. Whelan, A. LeGrone, and L. A. Ball. 1994. Extent of terminal complementarity modulates the balance between transcription and replication of vesicular stomatitis virus RNA. Proc. Natl. Acad. Sci. USA 91:8587-8591.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 8587-8591
    • Wertz, G.W.1    Whelan, S.2    LeGrone, A.3    Ball, L.A.4
  • 34
    • 0027265810 scopus 로고
    • Interaction of polypyrimidine tract binding protein with the encephalomyocarditis virus mRNA internal ribosomal entry site
    • Witherell, G. W., A. Gil, and E. Wimmer. 1993. Interaction of polypyrimidine tract binding protein with the encephalomyocarditis virus mRNA internal ribosomal entry site. Biochemistry 32:8268-8275.
    • (1993) Biochemistry , vol.32 , pp. 8268-8275
    • Witherell, G.W.1    Gil, A.2    Wimmer, E.3
  • 35
    • 0029417218 scopus 로고
    • Cis-acting elements of the encephalomyocarditis virus internal ribosomal entry site
    • Witherell, G. W., C. S. Schultz-Witherell, and E. Wimmer. 1995. Cis-acting elements of the encephalomyocarditis virus internal ribosomal entry site. Virology 214:660-663.
    • (1995) Virology , vol.214 , pp. 660-663
    • Witherell, G.W.1    Schultz-Witherell, C.S.2    Wimmer, E.3
  • 36
    • 0028355459 scopus 로고
    • Encephalomyocarditis virus internal ribosomal entry site RNA-protein interactions
    • Witherell, G. W., and E. Wimmer. 1994. Encephalomyocarditis virus internal ribosomal entry site RNA-protein interactions. J. Virol. 68:3183-3192.
    • (1994) J. Virol. , vol.68 , pp. 3183-3192
    • Witherell, G.W.1    Wimmer, E.2
  • 37
    • 0026580201 scopus 로고
    • Sequence and structure of the catalytic RNA of hepatitis delta virus genomic RNA
    • Wu, H.-N., Y. J. Wang, C.-F. Hung, H.-J. Lee, and M. M. C. Lai. 1992. Sequence and structure of the catalytic RNA of hepatitis delta virus genomic RNA. J. Mol. Biol. 223:233-245.
    • (1992) J. Mol. Biol. , vol.223 , pp. 233-245
    • Wu, H.-N.1    Wang, Y.J.2    Hung, C.-F.3    Lee, H.-J.4    Lai, M.M.C.5
  • 40
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamic and auxiliary information
    • Zuker, M., and P. Stiegler. 1981. Optimal computer folding of large RNA sequences using thermodynamic and auxiliary information. Nucleic Acids Res. 9:133-148.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.