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Volumn 7, Issue , 2010, Pages

Anticipating and blocking HIV-1 escape by second generation antiviral shRNAs

Author keywords

[No Author keywords available]

Indexed keywords

INTEGRASE; LENTIVIRUS VECTOR; SHORT HAIRPIN RNA; ANTI HUMAN IMMUNODEFICIENCY VIRUS AGENT; SMALL INTERFERING RNA;

EID: 77953124494     PISSN: None     EISSN: 17424690     Source Type: Journal    
DOI: 10.1186/1742-4690-7-52     Document Type: Article
Times cited : (37)

References (38)
  • 1
    • 0035912249 scopus 로고    scopus 로고
    • HIV chemotherapy
    • 10.1038/35073673, 11309630
    • Richman DD. HIV chemotherapy. Nature 2001, 410:995-1001. 10.1038/35073673, 11309630.
    • (2001) Nature , vol.410 , pp. 995-1001
    • Richman, D.D.1
  • 2
    • 4644223259 scopus 로고    scopus 로고
    • Mechanisms of gene silencing by double-stranded RNA
    • 10.1038/nature02873, 15372041
    • Meister G, Tuschl T. Mechanisms of gene silencing by double-stranded RNA. Nature 2004, 431:343-349. 10.1038/nature02873, 15372041.
    • (2004) Nature , vol.431 , pp. 343-349
    • Meister, G.1    Tuschl, T.2
  • 3
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • 10.1038/35888, 9486653
    • Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998, 391:806-811. 10.1038/35888, 9486653.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 4
    • 0034737298 scopus 로고    scopus 로고
    • RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals
    • 10.1016/S0092-8674(00)80620-0, 10778853
    • Zamore PD, Tuschl T, Sharp PA, Bartel DP. RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell 2000, 101:25-33. 10.1016/S0092-8674(00)80620-0, 10778853.
    • (2000) Cell , vol.101 , pp. 25-33
    • Zamore, P.D.1    Tuschl, T.2    Sharp, P.A.3    Bartel, D.P.4
  • 5
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • 10.1038/35078107, 11373684
    • Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 2001, 411:494-498. 10.1038/35078107, 11373684.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 6
    • 0035261255 scopus 로고    scopus 로고
    • Post-transcriptional gene silencing by double-stranded RNA
    • 10.1038/35052556, 11253050
    • Hammond SM, Caudy AA, Hannon GJ. Post-transcriptional gene silencing by double-stranded RNA. Nat Rev Genet 2001, 2:110-119. 10.1038/35052556, 11253050.
    • (2001) Nat Rev Genet , vol.2 , pp. 110-119
    • Hammond, S.M.1    Caudy, A.A.2    Hannon, G.J.3
  • 7
    • 0142124143 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 escape from RNA interference
    • 10.1128/JVI.77.21.11531-11535.2003, 229317, 14557638
    • Boden D, Pusch O, Lee F, Tucker L, Ramratnam B. Human immunodeficiency virus type 1 escape from RNA interference. J Virol 2003, 77:11531-11535. 10.1128/JVI.77.21.11531-11535.2003, 229317, 14557638.
    • (2003) J Virol , vol.77 , pp. 11531-11535
    • Boden, D.1    Pusch, O.2    Lee, F.3    Tucker, L.4    Ramratnam, B.5
  • 8
    • 1242319384 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 escapes from RNA interference-mediated inhibition
    • 10.1128/JVI.78.5.2601-2605.2004, 369246, 14963165
    • Das AT, Brummelkamp TR, Westerhout EM, Vink M, Madiredjo M, Bernards R, Berkhout B. Human immunodeficiency virus type 1 escapes from RNA interference-mediated inhibition. J Virol 2004, 78:2601-2605. 10.1128/JVI.78.5.2601-2605.2004, 369246, 14963165.
    • (2004) J Virol , vol.78 , pp. 2601-2605
    • Das, A.T.1    Brummelkamp, T.R.2    Westerhout, E.M.3    Vink, M.4    Madiredjo, M.5    Bernards, R.6    Berkhout, B.7
  • 9
    • 36849042601 scopus 로고    scopus 로고
    • RNA interference against viruses: strike and counterstrike
    • 10.1038/nbt1369, 18066040
    • Haasnoot J, Westerhout EM, Berkhout B. RNA interference against viruses: strike and counterstrike. Nat Biotechnol 2007, 25:1435-1443. 10.1038/nbt1369, 18066040.
    • (2007) Nat Biotechnol , vol.25 , pp. 1435-1443
    • Haasnoot, J.1    Westerhout, E.M.2    Berkhout, B.3
  • 10
    • 33746210111 scopus 로고    scopus 로고
    • Effective suppression of human immunodeficiency virus type 1 through a combination of short- or long-hairpin RNAs targeting essential sequences for retroviral integration
    • 10.1128/JVI.00078-06, 1563699, 16840344
    • Nishitsuji H, Kohara M, Kannagi M, Masuda T. Effective suppression of human immunodeficiency virus type 1 through a combination of short- or long-hairpin RNAs targeting essential sequences for retroviral integration. J Virol 2006, 80:7658-7666. 10.1128/JVI.00078-06, 1563699, 16840344.
    • (2006) J Virol , vol.80 , pp. 7658-7666
    • Nishitsuji, H.1    Kohara, M.2    Kannagi, M.3    Masuda, T.4
  • 11
    • 33751001588 scopus 로고    scopus 로고
    • Silencing of HIV-1 with RNA interference: a multiple shRNA approach
    • 10.1016/j.ymthe.2006.07.007, 16959541
    • Ter Brake O, Konstantinova P, Ceylan M, Berkhout B. Silencing of HIV-1 with RNA interference: a multiple shRNA approach. Mol Ther 2006, 14:883-892. 10.1016/j.ymthe.2006.07.007, 16959541.
    • (2006) Mol Ther , vol.14 , pp. 883-892
    • Ter Brake, O.1    Konstantinova, P.2    Ceylan, M.3    Berkhout, B.4
  • 12
    • 30344474936 scopus 로고    scopus 로고
    • Sequence homology required by human immunodeficiency virus type 1 to escape from short interfering RNAs
    • 10.1128/JVI.80.2.571-577.2006, 1346856, 16378959
    • Sabariegos R, Gimenez-Barcons M, Tapia N, Clotet B, Martinez MA. Sequence homology required by human immunodeficiency virus type 1 to escape from short interfering RNAs. J Virol 2006, 80:571-577. 10.1128/JVI.80.2.571-577.2006, 1346856, 16378959.
    • (2006) J Virol , vol.80 , pp. 571-577
    • Sabariegos, R.1    Gimenez-Barcons, M.2    Tapia, N.3    Clotet, B.4    Martinez, M.A.5
  • 13
    • 0036721314 scopus 로고    scopus 로고
    • Potent and specific inhibition of human immunodeficiency virus type 1 replication by RNA interference
    • 10.1128/JVI.76.18.9225-9231.2002, 136455, 12186906
    • Coburn GA, Cullen BR. Potent and specific inhibition of human immunodeficiency virus type 1 replication by RNA interference. J Virol 2002, 76:9225-9231. 10.1128/JVI.76.18.9225-9231.2002, 136455, 12186906.
    • (2002) J Virol , vol.76 , pp. 9225-9231
    • Coburn, G.A.1    Cullen, B.R.2
  • 14
  • 15
    • 70349448020 scopus 로고    scopus 로고
    • Development of an RNAi-based gene therapy against HIV-1
    • Cambridge: RSC Publishing, Kurreck J
    • Ter Brake O, Berkhout B. Development of an RNAi-based gene therapy against HIV-1. Therapeutic Oligonucleotides 2008, 296-311. Cambridge: RSC Publishing, Kurreck J.
    • (2008) Therapeutic Oligonucleotides , pp. 296-311
    • Ter Brake, O.1    Berkhout, B.2
  • 16
    • 13844320402 scopus 로고    scopus 로고
    • HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome
    • 10.1093/nar/gki220, 548362, 15687388
    • Westerhout EM, Ooms M, Vink M, Das AT, Berkhout B. HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome. Nucleic Acids Res 2005, 33:796-804. 10.1093/nar/gki220, 548362, 15687388.
    • (2005) Nucleic Acids Res , vol.33 , pp. 796-804
    • Westerhout, E.M.1    Ooms, M.2    Vink, M.3    Das, A.T.4    Berkhout, B.5
  • 17
    • 40149092147 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 escape is restricted when conserved genome sequences are targeted by RNA interference
    • 10.1128/JVI.02035-07, 2258968, 18077712
    • von Eije KJ, Ter Brake O, Berkhout B. Human immunodeficiency virus type 1 escape is restricted when conserved genome sequences are targeted by RNA interference. J Virol 2008, 82:2895-2903. 10.1128/JVI.02035-07, 2258968, 18077712.
    • (2008) J Virol , vol.82 , pp. 2895-2903
    • von Eije, K.J.1    Ter Brake, O.2    Berkhout, B.3
  • 18
    • 39849108343 scopus 로고    scopus 로고
    • Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition
    • 10.1038/sj.mt.6300382, 18180777
    • Ter Brake O, 't Hooft K, Liu YP, Centlivre M, von Eije KJ, Berkhout B. Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition. Mol Ther 2008, 16:557-564. 10.1038/sj.mt.6300382, 18180777.
    • (2008) Mol Ther , vol.16 , pp. 557-564
    • Ter Brake, O.1    't Hooft, K.2    Liu, Y.P.3    Centlivre, M.4    von Eije, K.J.5    Berkhout, B.6
  • 19
    • 0027946446 scopus 로고
    • Hypermutagenesis of RNA using human immunodeficiency virus type 1 reverse transcriptase and biased dNTP concentrations
    • 10.1073/pnas.91.25.11787, 45320, 7527543
    • Martinez MA, Vartanian JP, Wain-Hobson S. Hypermutagenesis of RNA using human immunodeficiency virus type 1 reverse transcriptase and biased dNTP concentrations. Proc Natl Acad Sci USA 1994, 91:11787-11791. 10.1073/pnas.91.25.11787, 45320, 7527543.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11787-11791
    • Martinez, M.A.1    Vartanian, J.P.2    Wain-Hobson, S.3
  • 22
    • 48449083017 scopus 로고    scopus 로고
    • HIV-1 drug resistance mutations: an updated framework for the second decade of HAART
    • 2547476, 18615118
    • Shafer RW, Schapiro JM. HIV-1 drug resistance mutations: an updated framework for the second decade of HAART. AIDS Rev 2008, 10:67-84. 2547476, 18615118.
    • (2008) AIDS Rev , vol.10 , pp. 67-84
    • Shafer, R.W.1    Schapiro, J.M.2
  • 23
    • 70349887777 scopus 로고    scopus 로고
    • Combinatorial RNAi against HIV-1 using extended short hairpin RNAs
    • 10.1038/mt.2009.176, 2835024, 19672247
    • Liu YP, von Eije KJ, Schopman NC, Westerink JT, Brake O, Haasnoot J, Berkhout B. Combinatorial RNAi against HIV-1 using extended short hairpin RNAs. Mol Ther 2009, 17:1712-1723. 10.1038/mt.2009.176, 2835024, 19672247.
    • (2009) Mol Ther , vol.17 , pp. 1712-1723
    • Liu, Y.P.1    von Eije, K.J.2    Schopman, N.C.3    Westerink, J.T.4    Brake, O.5    Haasnoot, J.6    Berkhout, B.7
  • 24
    • 34247278567 scopus 로고    scopus 로고
    • Combinatorial RNAi: a winning strategy for the race against evolving targets?
    • Grimm D, Kay MA. Combinatorial RNAi: a winning strategy for the race against evolving targets?. Mol Ther 2007, 15:878-888.
    • (2007) Mol Ther , vol.15 , pp. 878-888
    • Grimm, D.1    Kay, M.A.2
  • 25
    • 0242331285 scopus 로고    scopus 로고
    • Inhibition of hepatitis B virus replication by stably expressed shRNA
    • 10.1016/j.bbrc.2003.10.009, 14592428
    • Chen Y, Du D, Wu J, Chan CP, Tan Y, Kung HF, He ML. Inhibition of hepatitis B virus replication by stably expressed shRNA. Biochem Biophys Res Commun 2003, 311:398-404. 10.1016/j.bbrc.2003.10.009, 14592428.
    • (2003) Biochem Biophys Res Commun , vol.311 , pp. 398-404
    • Chen, Y.1    Du, D.2    Wu, J.3    Chan, C.P.4    Tan, Y.5    Kung, H.F.6    He, M.L.7
  • 27
    • 44449149276 scopus 로고    scopus 로고
    • Analysis of siRNA specificity on targets with double-nucleotide mismatches
    • 10.1093/nar/gkn190, 2248766, 17962301
    • Dahlgren C, Zhang HY, Du Q, Grahn M, Norstedt G, Wahlestedt C, Liang Z. Analysis of siRNA specificity on targets with double-nucleotide mismatches. Nucleic Acids Res 2008, 36:1-7. 10.1093/nar/gkn190, 2248766, 17962301.
    • (2008) Nucleic Acids Res , vol.36 , pp. 1-7
    • Dahlgren, C.1    Zhang, H.Y.2    Du, Q.3    Grahn, M.4    Norstedt, G.5    Wahlestedt, C.6    Liang, Z.7
  • 28
    • 15044358407 scopus 로고    scopus 로고
    • A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites
    • 10.1093/nar/gki312, 1069010, 15781493
    • Du Q, Thonberg H, Wang J, Wahlestedt C, Liang Z. A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites. Nucleic Acids Res 2005, 33:1671-1677. 10.1093/nar/gki312, 1069010, 15781493.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1671-1677
    • Du, Q.1    Thonberg, H.2    Wang, J.3    Wahlestedt, C.4    Liang, Z.5
  • 30
    • 56349155978 scopus 로고    scopus 로고
    • Engineering and optimization of the miR-106b cluster for ectopic expression of multiplexed anti-HIV RNAs
    • 10.1038/gt.2008.147, 18800151
    • Aagaard LA, Zhang J, von Eije KJ, Li H, Saetrom P, Amarzguioui M, Rossi JJ. Engineering and optimization of the miR-106b cluster for ectopic expression of multiplexed anti-HIV RNAs. Gene Ther 2008, 15:1536-1549. 10.1038/gt.2008.147, 18800151.
    • (2008) Gene Ther , vol.15 , pp. 1536-1549
    • Aagaard, L.A.1    Zhang, J.2    von Eije, K.J.3    Li, H.4    Saetrom, P.5    Amarzguioui, M.6    Rossi, J.J.7
  • 31
    • 44349178186 scopus 로고    scopus 로고
    • Expressed anti-HBV primary microRNA shuttles inhibit viral replication efficiently in vitro and in vivo
    • 10.1038/mt.2008.82, 18431360
    • Ely A, Naidoo T, Mufamadi S, Crowther C, Arbuthnot P. Expressed anti-HBV primary microRNA shuttles inhibit viral replication efficiently in vitro and in vivo. Mol Ther 2008, 16:1105-1112. 10.1038/mt.2008.82, 18431360.
    • (2008) Mol Ther , vol.16 , pp. 1105-1112
    • Ely, A.1    Naidoo, T.2    Mufamadi, S.3    Crowther, C.4    Arbuthnot, P.5
  • 32
    • 70350653829 scopus 로고    scopus 로고
    • RNAi-mediated inhibition of HIV-1 by targeting partially complementary viral sequences
    • 10.1093/nar/gkp644, 2764431, 19656954
    • Liu YP, Gruber J, Haasnoot J, Konstantinova P, Berkhout B. RNAi-mediated inhibition of HIV-1 by targeting partially complementary viral sequences. Nucleic Acids Res 2009, 37:6194-6204. 10.1093/nar/gkp644, 2764431, 19656954.
    • (2009) Nucleic Acids Res , vol.37 , pp. 6194-6204
    • Liu, Y.P.1    Gruber, J.2    Haasnoot, J.3    Konstantinova, P.4    Berkhout, B.5
  • 33
    • 19344370167 scopus 로고    scopus 로고
    • Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing
    • 10.1016/j.immuni.2005.03.010, 15894278
    • Bennasser Y, Le SY, Benkirane M, Jeang KT. Evidence that HIV-1 encodes an siRNA and a suppressor of RNA silencing. Immunity 2005, 22:607-619. 10.1016/j.immuni.2005.03.010, 15894278.
    • (2005) Immunity , vol.22 , pp. 607-619
    • Bennasser, Y.1    Le, S.Y.2    Benkirane, M.3    Jeang, K.T.4
  • 34
    • 58849125280 scopus 로고    scopus 로고
    • HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1
    • 10.1073/pnas.0806822106, 2626750, 19122141
    • Qian S, Zhong X, Yu L, Ding B, de Haan P, Boris-Lawrie K. HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1. Proc Natl Acad Sci USA 2009, 106:605-610. 10.1073/pnas.0806822106, 2626750, 19122141.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 605-610
    • Qian, S.1    Zhong, X.2    Yu, L.3    Ding, B.4    de Haan, P.5    Boris-Lawrie, K.6
  • 35
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • 10.1126/science.1068999, 11910072
    • Brummelkamp TR, Bernards R, Agami R. A system for stable expression of short interfering RNAs in mammalian cells. Science 2002, 296:550-553. 10.1126/science.1068999, 11910072.
    • (2002) Science , vol.296 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 36
    • 0036116344 scopus 로고    scopus 로고
    • Lentiviral vectors for efficient transduction of isolated primary quiescent hepatocytes
    • 10.1016/S0168-8278(01)00308-7, 11943415
    • Seppen J, Rijnberg M, Cooreman MP, Oude Elferink RP. Lentiviral vectors for efficient transduction of isolated primary quiescent hepatocytes. J Hepatol 2002, 36:459-465. 10.1016/S0168-8278(01)00308-7, 11943415.
    • (2002) J Hepatol , vol.36 , pp. 459-465
    • Seppen, J.1    Rijnberg, M.2    Cooreman, M.P.3    Oude Elferink, R.P.4
  • 37
    • 0026318224 scopus 로고
    • Changes in growth properties on passage in tissue culture of viruses derived from infectious molecular clones of HIV-1LAI, HIV-1MAL, and HIV-1ELI
    • Peden K, Emerman M, Montagnier L. Changes in growth properties on passage in tissue culture of viruses derived from infectious molecular clones of HIV-1LAI, HIV-1MAL, and HIV-1ELI. Virol 1991, 185:661-672.
    • (1991) Virol , vol.185 , pp. 661-672
    • Peden, K.1    Emerman, M.2    Montagnier, L.3
  • 38
    • 33646847926 scopus 로고    scopus 로고
    • Hairpin-induced tRNA-mediated (HITME) recombination in HIV-1
    • 10.1093/nar/gkl226, 1456326, 16670429
    • Konstantinova P, de Haan P, Das AT, Berkhout B. Hairpin-induced tRNA-mediated (HITME) recombination in HIV-1. Nucleic Acids Res 2006, 34:2206-2218. 10.1093/nar/gkl226, 1456326, 16670429.
    • (2006) Nucleic Acids Res , vol.34 , pp. 2206-2218
    • Konstantinova, P.1    de Haan, P.2    Das, A.T.3    Berkhout, B.4


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