-
1
-
-
77955437093
-
A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate
-
AMES, T. D., RODIONOV, D. A., WEINBERG, Z. & BREAKER, R. R. (2010). A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate. Chemistry and Biology 17, 681-685.
-
(2010)
Chemistry and Biology
, vol.17
, pp. 681-685
-
-
Ames, T.D.1
Rodionov, D.A.2
Weinberg, Z.3
Breaker, R.R.4
-
2
-
-
30344469912
-
PilZ domain is part of the bacterial c-di-GMP binding protein
-
AMIKAM, D. & GALPERIN, M. Y. (2006). PilZ domain is part of the bacterial c-di-GMP binding protein. Bioinformatics 22, 3-6.
-
(2006)
Bioinformatics
, vol.22
, pp. 3-6
-
-
Amikam, D.1
Galperin, M.Y.2
-
3
-
-
38649084104
-
Mechanisms of resistance to an amino acid antibiotic that targets translation
-
ATAIDE, S. F., WILSON, S. N., DANG, S., ROGERS, T. E., ROY, B., BANERJEE, R., HENKIN, T.M. & IBBA, M. (2007). Mechanisms of resistance to an amino acid antibiotic that targets translation. ACS Chemical Biology 2, 819-827.
-
(2007)
ACS Chemical Biology
, vol.2
, pp. 819-827
-
-
Ataide, S.F.1
Wilson, S.N.2
Dang, S.3
Rogers, T.E.4
Roy, B.5
Banerjee, R.6
Henkin, T.M.7
Ibba, M.8
-
4
-
-
10044239249
-
Halogen bonds in biological molecules
-
AUFFINGER, P., HAYS, F.A., WESTHOF, E. & HO, P.S. (2004). Halogen bonds in biological molecules. Proceedings of the National Academy of Sciences of the United States of America 101, 16789-16794.
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 16789-16794
-
-
Auffinger, P.1
Hays, F.A.2
Westhof, E.3
Ho, P.S.4
-
5
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
BARRANGOU, R., FREMAUX, C., DEVEAU, H., RICHARDS, M., BOYAVAL, P., MOINEAU, S., ROMERO, D. A. & HORVATH, P. (2007). CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709-1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
6
-
-
46349083026
-
The distributions, mechanisms, and structures of metabolite-binding ri-boswitches
-
BARRICK, J. E. & BREAKER, R. R. (2007). The distributions, mechanisms, and structures of metabolite-binding ri-boswitches. Genome Biology 8, R239.
-
(2007)
Genome Biology
, vol.8
-
-
Barrick, J.E.1
Breaker, R.R.2
-
7
-
-
2342511433
-
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
-
BARRICK, J. E., CORBINO, K. A., WINKLER, W. C., NAHVI, A., MANDAL, M., COLLINS, J., LEE, M., ROTH, A., SUDARSAN, N., JONA, I., WICKISER, J.K. & BREAKER, R. R. (2004). New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proceedings of the National Academy of Sciences of the United States of America 101, 6421-6426.
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 6421-6426
-
-
Barrick, J.E.1
Corbino, K.A.2
Winkler, W.C.3
Nahvi, A.4
Mandal, M.5
Collins, J.6
Lee, M.7
Roth, A.8
Sudarsan, N.9
Jona, I.10
Wickiser, J.K.11
Breaker, R.R.12
-
8
-
-
84855724406
-
Recognition of S-adenosylmethionine by riboswitches
-
BATEY, R. T. (2011). Recognition of S-adenosylmethionine by riboswitches. Wiley Interdisciplinary Reviews: RNA 2, 299-311.
-
(2011)
Wiley Interdisciplinary Reviews: RNA
, vol.2
, pp. 299-311
-
-
Batey, R.T.1
-
9
-
-
9244225713
-
Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
-
BATEY, R. T., GILBERT, S. D. & MONTANGE, R. K. (2004). Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature 432, 411-415.
-
(2004)
Nature
, vol.432
, pp. 411-415
-
-
Batey, R.T.1
Gilbert, S.D.2
Montange, R.K.3
-
10
-
-
0000412516
-
Modern metabolism as a palimpsest of the RNA world
-
BENNER, S. A., ELLINGTON, A. D. & TAUER, A. (1989). Modern metabolism as a palimpsest of the RNA world. Proceedings of the National Academy of Sciences of the United States of America 86, 7054-7058.
-
(1989)
Proceedings of the National Academy of Sciences of the United States of America
, vol.86
, pp. 7054-7058
-
-
Benner, S.A.1
Ellington, A.D.2
Tauer, A.3
-
11
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
BENNETT, B. D., KIMBALL, E. H., GAO, M., OSTERHOUT, R., VAN DIEN, S. J. & RABINOWITZ, J. D. (2009). Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nature Chemical Biology 5, 593-599.
-
(2009)
Nature Chemical Biology
, vol.5
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
Van Dien, S.J.5
Rabinowitz, J.D.6
-
12
-
-
78650391868
-
Genetics: Revealing the dark matter of the genome
-
BLAXTER, M. (2010). Genetics: revealing the dark matter of the genome. Science 330, 1758-1759.
-
(2010)
Science
, vol.330
, pp. 1758-1759
-
-
Blaxter, M.1
-
13
-
-
60349085695
-
Riboswitches: Ancient and promising genetic regulators
-
BLOUIN, S., MULHBACHER, J., PENEDO, J. C. & LAFONTAINE, D. A. (2009). Riboswitches: ancient and promising genetic regulators. Chembiochem: A European Journal of Chemical Biology 10, 400-416.
-
(2009)
Chembiochem: A European Journal of Chemical Biology
, vol.10
, pp. 400-416
-
-
Blouin, S.1
Mulhbacher, J.2
Penedo, J.C.3
Lafontaine, D.A.4
-
14
-
-
33845700514
-
Riboswitches as antibacterial drug targets
-
BLOUNT, K. F. & BREAKER, R. R. (2006). Riboswitches as antibacterial drug targets. Nature Biotechnology 24, 1558-1564.
-
(2006)
Nature Biotechnology
, vol.24
, pp. 1558-1564
-
-
Blount, K.F.1
Breaker, R.R.2
-
15
-
-
33845710324
-
Antibacterial lysine analogs that target lysine riboswitches
-
BLOUNT, K.F., WANG, J.X., LIM, J., SUDARSAN, N. & BREAKER, R. R. (2007). Antibacterial lysine analogs that target lysine riboswitches. Nature Chemical Biology 3, 44-49.
-
(2007)
Nature Chemical Biology
, vol.3
, pp. 44-49
-
-
Blount, K.F.1
Wang, J.X.2
Lim, J.3
Sudarsan, N.4
Breaker, R.R.5
-
16
-
-
70350340728
-
The role of dynamic conformational ensembles in biomole-cular recognition
-
BOEHR, D. D., NUSSINOV, R. & WRIGHT, P. E. (2009). The role of dynamic conformational ensembles in biomole-cular recognition. Nature Chemical Biology 5, 789-796.
-
(2009)
Nature Chemical Biology
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
17
-
-
45849095234
-
Biochemistry. How do proteins interact?
-
BOEHR, D. D. & WRIGHT, P. E. (2008). Biochemistry. How do proteins interact? Science 320, 1429-1430.
-
(2008)
Science
, vol.320
, pp. 1429-1430
-
-
Boehr, D.D.1
Wright, P.E.2
-
19
-
-
80052973462
-
Prospects for riboswitch discovery and analysis
-
BREAKER, R. R. (2011). Prospects for riboswitch discovery and analysis. Molecular Cell 43, 867-879.
-
(2011)
Molecular Cell
, vol.43
, pp. 867-879
-
-
Breaker, R.R.1
-
20
-
-
77749304812
-
Multivector fluorescence analysis of the xpt guanine riboswitch aptamer domain and the conformational role of guanine
-
BRENNER, M. D., SCANLAN, M. S., NAHAS, M. K., HA, T. & SILVERMAN, S. K. (2010). Multivector fluorescence analysis of the xpt guanine riboswitch aptamer domain and the conformational role of guanine. Biochemistry 49, 1596-1605.
-
(2010)
Biochemistry
, vol.49
, pp. 1596-1605
-
-
Brenner, M.D.1
Scanlan, M.S.2
Nahas, M.K.3
Ha, T.4
Silverman, S.K.5
-
22
-
-
77951541717
-
A NusE: NusG complex links transcription and translation
-
BURMANN, B. M., SCHWEIMER, K., LUO, X., WAHL, M. C., STITT, B. L., GOTTESMAN, M. E. & ROSCH, P. (2010). A NusE:NusG complex links transcription and translation. Science 328, 501-504.
-
(2010)
Science
, vol.328
, pp. 501-504
-
-
Burmann, B.M.1
Schweimer, K.2
Luo, X.3
Wahl, M.C.4
Stitt, B.L.5
Gottesman, M.E.6
Rosch, P.7
-
23
-
-
77952499429
-
Selecting RNA aptamers for synthetic biology: Investigating magnesium dependence and predicting binding affinity
-
CAROTHERS, J. M., GOLER, J. A., KAPOOR, Y., LARA, L. & KEASLING, J. D. (2010). Selecting RNA aptamers for synthetic biology: investigating magnesium dependence and predicting binding affinity. Nucleic Acids Research 38, 2736-2747.
-
(2010)
Nucleic Acids Research
, vol.38
, pp. 2736-2747
-
-
Carothers, J.M.1
Goler, J.A.2
Kapoor, Y.3
Lara, L.4
Keasling, J.D.5
-
24
-
-
1942489258
-
Informational complexity and functional activity of RNA structures
-
CAROTHERS, J.M., OESTREICH, S.C., DAVIS, J.H. & SZOSTAK, J. W. (2004). Informational complexity and functional activity of RNA structures. Journal of the American Chemical Society 126, 5130-5137.
-
(2004)
Journal of the American Chemical Society
, vol.126
, pp. 5130-5137
-
-
Carothers, J.M.1
Oestreich, S.C.2
Davis, J.H.3
Szostak, J.W.4
-
25
-
-
0029820625
-
Crystal structure of a group i ribozyme domain: Principles of RNA packing
-
CATE, J.H., GOODING, A. R., PODELL, E., ZHOU, K., GOLDEN, B.L., KUNDROT, C.E., CECH, T.R. & DOUDNA, J. A. (1996). Crystal structure of a group I ribozyme domain: principles of RNA packing. Science 273, 1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
26
-
-
0030894628
-
Xanthine metabolism in Bacillus subtilis: Characterization of the xpt-pbuX operon and evidence for purine-and nitrogen-controlled expression of genes involved in xanthine salvage and catabolism
-
CHRISTIANSEN, L.C., SCHOU, S., NYGAARD, P. & SAXILD, H. H. (1997). Xanthine metabolism in Bacillus subtilis: characterization of the xpt-pbuX operon and evidence for purine-and nitrogen-controlled expression of genes involved in xanthine salvage and catabolism. Journal of Bacteriology 179, 2540-2550.
-
(1997)
Journal of Bacteriology
, vol.179
, pp. 2540-2550
-
-
Christiansen, L.C.1
Schou, S.2
Nygaard, P.3
Saxild, H.H.4
-
27
-
-
0037146606
-
Breakthrough of the year. Small RNAs make big splash
-
COUZIN, J. (2002). Breakthrough of the year. Small RNAs make big splash. Science 298, 2296-2297.
-
(2002)
Science
, vol.298
, pp. 2296-2297
-
-
Couzin, J.1
-
28
-
-
0016169138
-
The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA
-
CROTHERS, D. M., COLE, P. E., HILBERS, C. W. & SHULMAN, R. G. (1974). The molecular mechanism of thermal unfolding of Escherichia coli formylmethionine transfer RNA. Journal of Molecular Biology 87, 63-88.
-
(1974)
Journal of Molecular Biology
, vol.87
, pp. 63-88
-
-
Crothers, D.M.1
Cole, P.E.2
Hilbers, C.W.3
Shulman, R.G.4
-
29
-
-
79953067257
-
Novel ligands for a purine riboswitch discovered by RNA-ligand docking
-
DALDROP, P., REYES, F. E., ROBINSON, D. A., HAMMOND, C. M., LILLEY, D. M., BATEY, R. T. & BRENK, R. (2011). Novel ligands for a purine riboswitch discovered by RNA-ligand docking. Chemistry and Biology 18, 324-335.
-
(2011)
Chemistry and Biology
, vol.18
, pp. 324-335
-
-
Daldrop, P.1
Reyes, F.E.2
Robinson, D.A.3
Hammond, C.M.4
Lilley, D.M.5
Batey, R.T.6
Brenk, R.7
-
30
-
-
70350107533
-
Three-way RNA junctions with remote tertiary contacts: A recurrent and highly versatile fold
-
DE LA PENA, M., DUFOUR, D. & GALLEGO, J. (2009). Three-way RNA junctions with remote tertiary contacts: a recurrent and highly versatile fold. RNA 15, 1949-1964.
-
(2009)
RNA
, vol.15
, pp. 1949-1964
-
-
De La Pena, M.1
Dufour, D.2
Gallego, J.3
-
31
-
-
77957935381
-
CRISPR/Cas system and its role in phage-bacteria interactions
-
DEVEAU, H., GARNEAU, J. E. & MOINEAU, S. (2010). CRISPR/Cas system and its role in phage-bacteria interactions. Annual Review of Microbiology 64, 475-493.
-
(2010)
Annual Review of Microbiology
, vol.64
, pp. 475-493
-
-
Deveau, H.1
Garneau, J.E.2
Moineau, S.3
-
32
-
-
77649260489
-
Reengineering orthogonally selective riboswitches
-
DIXON, N., DUNCAN, J. N., GEERLINGS, T., DUNSTAN, M. S., MCCARTHY, J. E., LEYS, D. & MICKLEFIELD, J. (2010). Reengineering orthogonally selective riboswitches. Proceedings of the National Academy of Sciences of the United States of America 107, 2830-2835.
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 2830-2835
-
-
Dixon, N.1
Duncan, J.N.2
Geerlings, T.3
Dunstan, M.S.4
McCarthy, J.E.5
Leys, D.6
Micklefield, J.7
-
33
-
-
0035073865
-
A universal mode of helix packing in RNA
-
DOHERTY, E. A., BATEY, R. T., MASQUIDA, B. & DOUDNA, J. A. (2001). A universal mode of helix packing in RNA. Nature Structural Biology 8, 339-343.
-
(2001)
Nature Structural Biology
, vol.8
, pp. 339-343
-
-
Doherty, E.A.1
Batey, R.T.2
Masquida, B.3
Doudna, J.A.4
-
34
-
-
58149138753
-
A structural basis for the recognition of 2k-deoxyguanosine by the purine riboswitch
-
EDWARDS, A. L. & BATEY, R. T. (2009). A structural basis for the recognition of 2k-deoxyguanosine by the purine riboswitch. Journal of Molecular Biology 385, 938-948.
-
(2009)
Journal of Molecular Biology
, vol.385
, pp. 938-948
-
-
Edwards, A.L.1
Batey, R.T.2
-
35
-
-
84863405959
-
Unraveling the structural complexity in a single-stranded RNA tail: Implications for efficient ligand binding in the prequeuosine riboswitch
-
EICHHORN, C.D., FENG, J., SUDDALA, K.C., WALTER, N. G., BROOKS, C. L. III & AL-HASHIMI, H. M. (2012). Unraveling the structural complexity in a single-stranded RNA tail: implications for efficient ligand binding in the prequeuosine riboswitch. Nucleic Acids Research 40, 1345-1355.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 1345-1355
-
-
Eichhorn, C.D.1
Feng, J.2
Suddala, K.C.3
Walter, N.G.4
Brooks III, C.L.5
Al-Hashimi, H.M.6
-
36
-
-
35048838732
-
Ligand-directed dynamics of adenine riboswitch conformers
-
ESKANDARI, S., PRYCHYNA, O., LEUNG, J., AVDIC, D. & O'NEILL, M. A. (2007). Ligand-directed dynamics of adenine riboswitch conformers. Journal of the American Chemical Society 129, 11308-11309.
-
(2007)
Journal of the American Chemical Society
, vol.129
, pp. 11308-11309
-
-
Eskandari, S.1
Prychyna, O.2
Leung, J.3
Avdic, D.4
O'Neill, M.A.5
-
37
-
-
49249128839
-
The corrin moiety of coenzyme B12 is the determinant for switching the btuB riboswitch of E. coli
-
GALLO, S., OBERHUBER, M., SIGEL, R. K. & KRAUTLER, B. (2008). The corrin moiety of coenzyme B12 is the determinant for switching the btuB riboswitch of E. coli. Chembiochem: A European Journal of Chemical Biology 9, 1408-1414.
-
(2008)
Chembiochem: A European Journal of Chemical Biology
, vol.9
, pp. 1408-1414
-
-
Gallo, S.1
Oberhuber, M.2
Sigel, R.K.3
Krautler, B.4
-
38
-
-
72149126118
-
A switch in time: Detailing the life of a riboswitch
-
GARST, A. D. & BATEY, R. T. (2009). A switch in time: detailing the life of a riboswitch. Biochimica et Biophysica Acta 1789, 584-591.
-
(2009)
Biochimica et Biophysica Acta
, vol.1789
, pp. 584-591
-
-
Garst, A.D.1
Batey, R.T.2
-
39
-
-
53049094260
-
Crystal structure of the lysine riboswitch regulatory mRNA element
-
GARST, A. D., HEROUX, A., RAMBO, R. P. & BATEY, R. T. (2008). Crystal structure of the lysine riboswitch regulatory mRNA element. Journal of Biological Chemistry 283, 22347-22351.
-
(2008)
Journal of Biological Chemistry
, vol.283
, pp. 22347-22351
-
-
Garst, A.D.1
Heroux, A.2
Rambo, R.P.3
Batey, R.T.4
-
40
-
-
51949099863
-
Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA
-
GHERGHE, C. M., SHAJANI, Z., WILKINSON, K. A., VARANI, G. & WEEKS, K. M. (2008). Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA. Journal of the American Chemical Society 130, 12244-12245.
-
(2008)
Journal of the American Chemical Society
, vol.130
, pp. 12244-12245
-
-
Gherghe, C.M.1
Shajani, Z.2
Wilkinson, K.A.3
Varani, G.4
Weeks, K.M.5
-
41
-
-
58449134534
-
Small silencing RNAs: An expanding universe. Nature Reviews
-
GHILDIYAL, M. & ZAMORE, P. D. (2009). Small silencing RNAs: an expanding universe. Nature Reviews. Genetics 10, 94-108.
-
(2009)
Genetics
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
42
-
-
36248982074
-
Mutational analysis of the purine ribo-switch aptamer domain
-
GILBERT, S.D., LOVE, C.E., EDWARDS, A.L. & BATEY, R. T. (2007). Mutational analysis of the purine ribo-switch aptamer domain. Biochemistry 46, 13297-13309.
-
(2007)
Biochemistry
, vol.46
, pp. 13297-13309
-
-
Gilbert, S.D.1
Love, C.E.2
Edwards, A.L.3
Batey, R.T.4
-
43
-
-
33750712046
-
Modified pyrimidines specifically bind the purine riboswitch
-
GILBERT, S. D., MEDIATORE, S. J. & BATEY, R. T. (2006a). Modified pyrimidines specifically bind the purine riboswitch. Journal of the American Chemical Society 128, 14214-14215.
-
(2006)
Journal of the American Chemical Society
, vol.128
, pp. 14214-14215
-
-
Gilbert, S.D.1
Mediatore, S.J.2
Batey, R.T.3
-
44
-
-
38849197858
-
Structure of the SAM-II riboswitch bound to S-adenosylmethionine
-
GILBERT, S. D., RAMBO, R.P., VAN TYNE, D. & BATEY, R. T. (2008). Structure of the SAM-II riboswitch bound to S-adenosylmethionine. Nature Structural and Molecular Biology 15, 177-182.
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, pp. 177-182
-
-
Gilbert, S.D.1
Rambo, R.P.2
Van Tyne, D.3
Batey, R.T.4
-
45
-
-
66349133602
-
Adaptive ligand binding by the purine riboswitch in the recognition of guanine and adenine analogs
-
GILBERT, S.D., REYES, F.E., EDWARDS, A.L. & BATEY, R. T. (2009). Adaptive ligand binding by the purine riboswitch in the recognition of guanine and adenine analogs. Structure 17, 857-868.
-
(2009)
Structure
, vol.17
, pp. 857-868
-
-
Gilbert, S.D.1
Reyes, F.E.2
Edwards, A.L.3
Batey, R.T.4
-
46
-
-
33646768226
-
Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch apta-mer domain
-
GILBERT, S.D., STODDARD, C. D., WISE, S. J. & BATEY, R. T. (2006b). Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch apta-mer domain. Journal of Molecular Biology 359, 754-768.
-
(2006)
Journal of Molecular Biology
, vol.359
, pp. 754-768
-
-
Gilbert, S.D.1
Stoddard, C.D.2
Wise, S.J.3
Batey, R.T.4
-
47
-
-
1642458421
-
The kink-turn motif in RNA is dimorphic, and metal ion-dependent
-
GOODY, T. A., MELCHER, S. E., NORMAN, D. G. & LILLEY, D. M. (2004). The kink-turn motif in RNA is dimorphic, and metal ion-dependent. RNA 10, 254-264.
-
(2004)
RNA
, vol.10
, pp. 254-264
-
-
Goody, T.A.1
Melcher, S.E.2
Norman, D.G.3
Lilley, D.M.4
-
48
-
-
38849204944
-
Direct observation of hierarchical folding in single riboswitch aptamers
-
GREENLEAF, W., FRIEDA, K., FOSTER, D., WOODSIDE, M. & BLOCK, S. (2008a). Direct observation of hierarchical folding in single riboswitch aptamers. Science 319, 630.
-
(2008)
Science
, vol.319
, pp. 630
-
-
Greenleaf, W.1
Frieda, K.2
Foster, D.3
Woodside, M.4
Block, S.5
-
49
-
-
38849204944
-
Direct observation of hierarchical folding in single riboswitch aptamers
-
GREENLEAF, W.J., FRIEDA, K.L., FOSTER, D.A., WOODSIDE, M. T. & BLOCK, S. M. (2008b). Direct observation of hierarchical folding in single riboswitch aptamers. Science 319, 630-633.
-
(2008)
Science
, vol.319
, pp. 630-633
-
-
Greenleaf, W.J.1
Frieda, K.L.2
Foster, D.A.3
Woodside, M.T.4
Block, S.M.5
-
50
-
-
78449267911
-
RNAs: Regulators of bacterial virulence
-
GRIPENLAND, J., NETTERLING, S., LOH, E., TIENSUU, T., TOLEDO-ARANA, A. & JOHANSSON, J. (2010). RNAs: regulators of bacterial virulence. Nature Reviews. Microbiology 8, 857-866.
-
(2010)
Nature Reviews. Microbiology
, vol.8
, pp. 857-866
-
-
Gripenland, J.1
Netterling, S.2
Loh, E.3
Tiensuu, T.4
Toledo-Arana, A.5
Johansson, J.6
-
51
-
-
79956072525
-
Conformational capture of the SAM-II riboswitch
-
HALLER, A., RIEDER, U., AIGNER, M., BLANCHARD, S. C. & MICURA, R. (2011a). Conformational capture of the SAM-II riboswitch. Nature Chemical Biology 7, 393-400.
-
(2011)
Nature Chemical Biology
, vol.7
, pp. 393-400
-
-
Haller, A.1
Rieder, U.2
Aigner, M.3
Blanchard, S.C.4
Micura, R.5
-
52
-
-
80052982281
-
The dynamic nature of RNA as key to understanding ribo-switch mechanisms
-
HALLER, A., SOULIERE, M. F. & MICURA, R. (2011b). The dynamic nature of RNA as key to understanding ribo-switch mechanisms. Accounts of Chemical Research 44, 1339-1348.
-
(2011)
Accounts of Chemical Research
, vol.44
, pp. 1339-1348
-
-
Haller, A.1
Souliere, M.F.2
Micura, R.3
-
53
-
-
63049137897
-
Principles of c-di-GMP signalling in bacteria
-
HENGGE, R. (2009). Principles of c-di-GMP signalling in bacteria. Nature Reviews Microbiology 7, 263-273.
-
(2009)
Nature Reviews Microbiology
, vol.7
, pp. 263-273
-
-
Hengge, R.1
-
54
-
-
38949114262
-
Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot
-
HEPPELL, B. & LAFONTAINE, D. A. (2008). Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot. Biochemistry 47, 1490-1499.
-
(2008)
Biochemistry
, vol.47
, pp. 1490-1499
-
-
Heppell, B.1
Lafontaine, D.A.2
-
55
-
-
48249125095
-
Structural principles from large RNAs
-
HOLBROOK, S. R. (2008). Structural principles from large RNAs. Annual Review of Biophysics 37, 445-464.
-
(2008)
Annual Review of Biophysics
, vol.37
, pp. 445-464
-
-
Holbrook, S.R.1
-
56
-
-
80052602449
-
Long-range pseudoknot interactions dictate the regulatory response in the tetra-hydrofolate riboswitch
-
HUANG, L., ISHIBE-MURAKAMI, S., PATEL, D.J. & SERGANOV, A. (2011). Long-range pseudoknot interactions dictate the regulatory response in the tetra-hydrofolate riboswitch. Proceedings of the National Academy of Sciences of the United States of America 108, 14801-14806.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 14801-14806
-
-
Huang, L.1
Ishibe-Murakami, S.2
Patel, D.J.3
Serganov, A.4
-
57
-
-
78649970557
-
Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch
-
HUANG, L., SERGANOV, A. & PATEL, D. J. (2010). Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch. Molecular Cell 40, 774-786.
-
(2010)
Molecular Cell
, vol.40
, pp. 774-786
-
-
Huang, L.1
Serganov, A.2
Patel, D.J.3
-
58
-
-
0344874269
-
Evolution of apta-mers with a new specificity and new secondary structures from an ATP aptamer
-
HUANG, Z. & SZOSTAK, J. W. (2003). Evolution of apta-mers with a new specificity and new secondary structures from an ATP aptamer. RNA 9, 1456-1463.
-
(2003)
RNA
, vol.9
, pp. 1456-1463
-
-
Huang, Z.1
Szostak, J.W.2
-
60
-
-
33646582649
-
RNA synthetic biology
-
ISAACS, F. J., DWYER, D. J. & COLLINS, J. J. (2006). RNA synthetic biology. Nature Biotechnology 24, 545-554.
-
(2006)
Nature Biotechnology
, vol.24
, pp. 545-554
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Collins, J.J.3
-
61
-
-
77951688391
-
Heterogeneity and dynamics of the ligand recognition mode in purine-sensing riboswitches
-
JAIN, N., ZHAO, L., LIU, J.D. & XIA, T. (2010). Heterogeneity and dynamics of the ligand recognition mode in purine-sensing riboswitches. Biochemistry 49, 3703-3714.
-
(2010)
Biochemistry
, vol.49
, pp. 3703-3714
-
-
Jain, N.1
Zhao, L.2
Liu, J.D.3
Xia, T.4
-
62
-
-
79960114180
-
Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation
-
JENKINS, J. L., KRUCINSKA, J., MCCARTY, R. M., BANDARIAN, V. & WEDEKIND, J. E. (2011). Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation. Journal of Biological Chemistry 286, 24626-24637.
-
(2011)
Journal of Biological Chemistry
, vol.286
, pp. 24626-24637
-
-
Jenkins, J.L.1
Krucinska, J.2
McCarty, R.M.3
Bandarian, V.4
Wedekind, J.E.5
-
63
-
-
0042890402
-
Definition of a second Bacillus subtilis pur regulon comprising the pur and xpt-pbuX operons plus pbu G, nupG (yxjA), and pbuE (ydhL)
-
JOHANSEN, L. E., NYGAARD, P., LASSEN, C., AGERSO, Y. & SAXILD, H. H. (2003). Definition of a second Bacillus subtilis pur regulon comprising the pur and xpt-pbuX operons plus pbu G, nupG (yxjA), and pbuE (ydhL). Journal of Bacteriology 185, 5200-5209.
-
(2003)
Journal of Bacteriology
, vol.185
, pp. 5200-5209
-
-
Johansen, L.E.1
Nygaard, P.2
Lassen, C.3
Agerso, Y.4
Saxild, H.H.5
-
64
-
-
62549154008
-
Structural insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the antic-odon of tRNA
-
KANG, M., PETERSON, R. & FEIGON, J. (2009). Structural insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the antic-odon of tRNA. Molecular Cell 33, 784-790.
-
(2009)
Molecular Cell
, vol.33
, pp. 784-790
-
-
Kang, M.1
Peterson, R.2
Feigon, J.3
-
65
-
-
73449116019
-
Design and antimicrobial action of purine analogues that bind Guanine ri-boswitches
-
KIM, J. N., BLOUNT, K. F., PUSKARZ, I., LIM, J., LINK, K. H. & BREAKER, R. R. (2009). Design and antimicrobial action of purine analogues that bind Guanine ri-boswitches. ACS Chemical Biology 4, 915-927.
-
(2009)
ACS Chemical Biology
, vol.4
, pp. 915-927
-
-
Kim, J.N.1
Blount, K.F.2
Puskarz, I.3
Lim, J.4
Link, K.H.5
Breaker, R.R.6
-
66
-
-
36048942754
-
Guanine riboswitch variants from Mesoplasma florum selectively recognize 2k-deoxyguanosine
-
KIM, J. N., ROTH, A. & BREAKER, R. R. (2007). Guanine riboswitch variants from Mesoplasma florum selectively recognize 2k-deoxyguanosine. Proceedings of the National Academy of Sciences of the United States of America 104, 16092-16097.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 16092-16097
-
-
Kim, J.N.1
Roth, A.2
Breaker, R.R.3
-
67
-
-
62049086072
-
Cocrystal structure of a class i preQ1 riboswitch reveals a pseudoknot recognizing an essential hyper-modified nucleobase
-
KLEIN, D.J., EDWARDS, T. E. & FERRE-D'AMARE, A. R. (2009). Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hyper-modified nucleobase. Nature Structural and Molecular Biology 16, 343-344.
-
(2009)
Nature Structural and Molecular Biology
, vol.16
, pp. 343-344
-
-
Klein, D.J.1
Edwards, T.E.2
Ferre-D'Amare, A.R.3
-
68
-
-
33748325570
-
Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
-
KLEIN, D. J. & FERRE-D'AMARE, A. R. (2006). Structural basis of glmS ribozyme activation by glucosamine-6-phosphate. Science 313, 1752-1756.
-
(2006)
Science
, vol.313
, pp. 1752-1756
-
-
Klein, D.J.1
Ferre-D'Amare, A.R.2
-
69
-
-
0035423087
-
The kink-turn: A new RNA secondary structure motif
-
KLEIN, D. J., SCHMEING, T. M., MOORE, P. B. & STEITZ, T. A. (2001). The kink-turn: a new RNA secondary structure motif. EMBO Journal 20, 4214-4221.
-
(2001)
EMBO Journal
, vol.20
, pp. 4214-4221
-
-
Klein, D.J.1
Schmeing, T.M.2
Moore, P.B.3
Steitz, T.A.4
-
70
-
-
71449123530
-
Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
-
KULSHINA, N., BAIRD, N.J. & FERRE-D'AMARE, A.R. (2009). Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nature Structural and Molecular Biology 16, 1212-1217.
-
(2009)
Nature Structural and Molecular Biology
, vol.16
, pp. 1212-1217
-
-
Kulshina, N.1
Baird, N.J.2
Ferre-D'Amare, A.R.3
-
71
-
-
0024041531
-
Cis-acting sites in the transcript of the Bacillus subtilis trp operon regulate expression of the operon
-
KURODA, M. I., HENNER, D. & YANOFSKY, C. (1988). cis-acting sites in the transcript of the Bacillus subtilis trp operon regulate expression of the operon. Journal of Bacteriology 170, 3080-3088.
-
(1988)
Journal of Bacteriology
, vol.170
, pp. 3080-3088
-
-
Kuroda, M.I.1
Henner, D.2
Yanofsky, C.3
-
72
-
-
77955630859
-
An allosteric self-splicing ribo-zyme triggered by a bacterial second messenger
-
LEE, E. R., BAKER, J. L., WEINBERG, Z., SUDARSAN, N. & BREAKER, R. R. (2010a). An allosteric self-splicing ribo-zyme triggered by a bacterial second messenger. Science 329, 845-848.
-
(2010)
Science
, vol.329
, pp. 845-848
-
-
Lee, E.R.1
Baker, J.L.2
Weinberg, Z.3
Sudarsan, N.4
Breaker, R.R.5
-
73
-
-
85011936077
-
Roseoflavin is a natural antibacterial compound that binds to FMN riboswitches and regulates gene expression
-
LEE, E.R., BLOUNT, K. F. & BREAKER, R.R. (2009). Roseoflavin is a natural antibacterial compound that binds to FMN riboswitches and regulates gene expression. RNA Biology 6, 187-194.
-
(2009)
RNA Biology
, vol.6
, pp. 187-194
-
-
Lee, E.R.1
Blount, K.F.2
Breaker, R.R.3
-
74
-
-
77952700860
-
Real-time multidimensional NMR follows RNA folding with second resolution
-
LEE, M. K., GAL, M., FRYDMAN, L. & VARANI, G. (2010b). Real-time multidimensional NMR follows RNA folding with second resolution. Proceedings of the National Academy of Sciences of the United States of America 107, 9192-9197.
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 9192-9197
-
-
Lee, M.K.1
Gal, M.2
Frydman, L.3
Varani, G.4
-
75
-
-
79851499341
-
Comparative study between transcrip-tionally-and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms
-
LEMAY, J.F., DESNOYERS, G., BLOUIN, S., HEPPELL, B., BASTET, L., ST-PIERRE, P., MASSE, E. & LAFONTAINE, D. A. (2011). Comparative study between transcrip-tionally-and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms. PLoS Genetics 7, e1001278.
-
(2011)
PLoS Genetics
, vol.7
-
-
Lemay, J.F.1
Desnoyers, G.2
Blouin, S.3
Heppell, B.4
Bastet, L.5
St-Pierre, P.6
Masse, E.7
Lafontaine, D.A.8
-
76
-
-
33847308180
-
Core requirements of the adenine riboswitch aptamer for ligand binding
-
LEMAY, J. F. & LAFONTAINE, D. A. (2007). Core requirements of the adenine riboswitch aptamer for ligand binding. RNA 13, 339-350.
-
(2007)
RNA
, vol.13
, pp. 339-350
-
-
Lemay, J.F.1
Lafontaine, D.A.2
-
77
-
-
33747345020
-
Folding of the adenine ribo-switch
-
LEMAY, J. F., PENEDO, J. C., TREMBLAY, R., LILLEY, D. M. & LAFONTAINE, D. A. (2006). Folding of the adenine ribo-switch. Chemistry and Biology 13, 857-868.
-
(2006)
Chemistry and Biology
, vol.13
, pp. 857-868
-
-
Lemay, J.F.1
Penedo, J.C.2
Tremblay, R.3
Lilley, D.M.4
Lafontaine, D.A.5
-
78
-
-
33744807172
-
The building blocks and motifs of RNA architecture
-
LEONTIS, N. B., LESCOUTE, A. & WESTHOF, E. (2006). The building blocks and motifs of RNA architecture. Current Opinion in Structural Biology 16, 279-287.
-
(2006)
Current Opinion in Structural Biology
, vol.16
, pp. 279-287
-
-
Leontis, N.B.1
Lescoute, A.2
Westhof, E.3
-
79
-
-
0032300804
-
Conserved geometrical base-pairing patterns in RNA
-
LEONTIS, N. B. & WESTHOF, E. (1998). Conserved geometrical base-pairing patterns in RNA. Quarterly Reviews of Biophysics 31, 399-455.
-
(1998)
Quarterly Reviews of Biophysics
, vol.31
, pp. 399-455
-
-
Leontis, N.B.1
Westhof, E.2
-
80
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
LEONTIS, N. B. & WESTHOF, E. (2001). Geometric nomenclature and classification of RNA base pairs. RNA 7, 499-512.
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
81
-
-
84865243362
-
Riboswitch structure in the ligand-free state. Wiley interdisciplinary reviews
-
LIBERMAN, J. A. & WEDEKIND, J. E. (2012). Riboswitch structure in the ligand-free state. Wiley interdisciplinary reviews. RNA 3, 369-384.
-
(2012)
RNA
, vol.3
, pp. 369-384
-
-
Liberman, J.A.1
Wedekind, J.E.2
-
82
-
-
44449150695
-
The dynamic structural basis of differential enhancement of conforma-tional stability by 5k-and 3k-dangling ends in RNA
-
LIU, J. D., ZHAO, L. & XIA, T. (2008). The dynamic structural basis of differential enhancement of conforma-tional stability by 5k-and 3k-dangling ends in RNA. Biochemistry 47, 5962-5975.
-
(2008)
Biochemistry
, vol.47
, pp. 5962-5975
-
-
Liu, J.D.1
Zhao, L.2
Xia, T.3
-
83
-
-
33645999355
-
S-adenosylmethionine: Jack of all trades and master of everything?
-
LOENEN, W. A. (2006). S-adenosylmethionine: jack of all trades and master of everything? Biochemical Society Transactions 34, 330-333.
-
(2006)
Biochemical Society Transactions
, vol.34
, pp. 330-333
-
-
Loenen, W.A.1
-
84
-
-
79958048297
-
Dynamic ensemble view of the con-formational landscape of HIV-1 TAR RNA and allosteric recognition
-
LU, J., KADAKKUZHA, B. M., ZHAO, L., FAN, M., QI, X. & XIA, T. (2011). Dynamic ensemble view of the con-formational landscape of HIV-1 TAR RNA and allosteric recognition. Biochemistry 50, 5042-5057.
-
(2011)
Biochemistry
, vol.50
, pp. 5042-5057
-
-
Lu, J.1
Kadakkuzha, B.M.2
Zhao, L.3
Fan, M.4
Qi, X.5
Xia, T.6
-
85
-
-
77649169870
-
MRNA secondary structures fold sequentially but exchange rapidly in vivo
-
MAHEN, E. M., WATSON, P. Y., COTTRELL, J. W. & FEDOR, M. J. (2010). mRNA secondary structures fold sequentially but exchange rapidly in vivo. PLoS Biology 8, e1000307.
-
(2010)
PLoS Biology
, vol.8
-
-
Mahen, E.M.1
Watson, P.Y.2
Cottrell, J.W.3
Fedor, M.J.4
-
86
-
-
0038210214
-
Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
-
MANDAL, M., BOESE, B., BARRICK, J. E., WINKLER, W. C. & BREAKER, R. R. (2003). Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell 113, 577-586.
-
(2003)
Cell
, vol.113
, pp. 577-586
-
-
Mandal, M.1
Boese, B.2
Barrick, J.E.3
Winkler, W.C.4
Breaker, R.R.5
-
87
-
-
0842334528
-
Adenine ri-boswitches and gene activation by disruption of a transcription terminator
-
MANDAL, M. & BREAKER, R. R. (2004a). Adenine ri-boswitches and gene activation by disruption of a transcription terminator. Nature Structural and Molecular Biology 11, 29-35.
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, pp. 29-35
-
-
Mandal, M.1
Breaker, R.R.2
-
89
-
-
0037453069
-
Transcription termination control of the S box system: Direct measurement of S-adenosylmethionine by the leader RNA
-
MCDANIEL, B.A., GRUNDY, F.J., ARTSIMOVITCH, I. & HENKIN, T. M. (2003). Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA. Proceedings of the National Academy of Sciences of the United States of America 100, 3083-3088.
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, pp. 3083-3088
-
-
McDaniel, B.A.1
Grundy, F.J.2
Artsimovitch, I.3
Henkin, T.M.4
-
90
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by selective 2k-hydroxyl acylation and primer extension (SHAPE)
-
MERINO, E.J., WILKINSON, K.A., COUGHLAN, J.L. & WEEKS, K. M. (2005). RNA structure analysis at single nucleotide resolution by selective 2k-hydroxyl acylation and primer extension (SHAPE). Journal of the American Chemical Society 127, 4223-4231.
-
(2005)
Journal of the American Chemical Society
, vol.127
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
91
-
-
41649108068
-
Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria
-
MEYER, M. M., ROTH, A., CHERVIN, S. M., GARCIA, G. A. & BREAKER, R. R. (2008). Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria. RNA 14, 685-695.
-
(2008)
RNA
, vol.14
, pp. 685-695
-
-
Meyer, M.M.1
Roth, A.2
Chervin, S.M.3
Garcia, G.A.4
Breaker, R.R.5
-
92
-
-
18744396047
-
Sensing small molecules by nascent RNA: A mechanism to control transcription in bacteria
-
MIRONOV, A. S., GUSAROV, I., RAFIKOV, R., LOPEZ, L. E., SHATALIN, K., KRENEVA, R.A., PERUMOV, D.A. & NUDLER, E. (2002). Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria. Cell 111, 747-756.
-
(2002)
Cell
, vol.111
, pp. 747-756
-
-
Mironov, A.S.1
Gusarov, I.2
Rafikov, R.3
Lopez, L.E.4
Shatalin, K.5
Kreneva, R.A.6
Perumov, D.A.7
Nudler, E.8
-
93
-
-
33745628336
-
Structure of the S-adenosylmethionine riboswitch regulatory mRNA element
-
MONTANGE, R. K. & BATEY, R. T. (2006). Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature 441, 1172-1175.
-
(2006)
Nature
, vol.441
, pp. 1172-1175
-
-
Montange, R.K.1
Batey, R.T.2
-
94
-
-
2342475659
-
Molecular basis of box C/D RNA-protein interactions; Cocrystal structure of archaeal L7Ae and a box C/D RNA
-
MOORE, T., ZHANG, Y., FENLEY, M. O. & LI, H. (2004). Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA. Structure 12, 807-818.
-
(2004)
Structure
, vol.12
, pp. 807-818
-
-
Moore, T.1
Zhang, Y.2
Fenley, M.O.3
Li, H.4
-
95
-
-
77954079519
-
Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways
-
MULHBACHER, J., BROUILLETTE, E., ALLARD, M., FORTIER, L. C., MALOUIN, F. & LAFONTAINE, D. A. (2010). Novel riboswitch ligand analogs as selective inhibitors of guanine-related metabolic pathways. PLoS Pathogens 6, e1000865.
-
(2010)
PLoS Pathogens
, vol.6
-
-
Mulhbacher, J.1
Brouillette, E.2
Allard, M.3
Fortier, L.C.4
Malouin, F.5
Lafontaine, D.A.6
-
96
-
-
34548726217
-
Ligand recognition determinants of guanine riboswitches
-
MULHBACHER, J. & LAFONTAINE, D. A. (2007). Ligand recognition determinants of guanine riboswitches. Nucleic Acids Research 35, 5568-5580.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 5568-5580
-
-
Mulhbacher, J.1
Lafontaine, D.A.2
-
97
-
-
0028301674
-
GAAA tetraloop and conserved bulge stabilize tertiary structure of a group i intron domain
-
MURPHY, F. L. & CECH, T. R. (1994). GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain. Journal of Molecular Biology 236, 49-63.
-
(1994)
Journal of Molecular Biology
, vol.236
, pp. 49-63
-
-
Murphy, F.L.1
Cech, T.R.2
-
98
-
-
0036753365
-
Genetic control by a metabolite binding mRNA
-
NAHVI, A., SUDARSAN, N., EBERT, M. S., ZOU, X., BROWN, K. L. & BREAKER, R. R. (2002). Genetic control by a metabolite binding mRNA. Chemistry and Biology 9, 1043.
-
(2002)
Chemistry and Biology
, vol.9
, pp. 1043
-
-
Nahvi, A.1
Sudarsan, N.2
Ebert, M.S.3
Zou, X.4
Brown, K.L.5
Breaker, R.R.6
-
99
-
-
44449087047
-
Single-molecule force spectroscopy: Optical tweezers, magnetic tweezers and atomic force microscopy
-
NEUMAN, K. C. & NAGY, A. (2008). Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy. Nature Methods 5, 491-505.
-
(2008)
Nature Methods
, vol.5
, pp. 491-505
-
-
Neuman, K.C.1
Nagy, A.2
-
100
-
-
80053216036
-
Single-molecule force spec-troscopy of the add adenine riboswitch relates folding to regulatory mechanism
-
NEUPANE, K., YU, H., FOSTER, D.A., WANG, F. & WOODSIDE, M. T. (2011). Single-molecule force spec-troscopy of the add adenine riboswitch relates folding to regulatory mechanism. Nucleic Acids Research 39, 7677-7687.
-
(2011)
Nucleic Acids Research
, vol.39
, pp. 7677-7687
-
-
Neupane, K.1
Yu, H.2
Foster, D.A.3
Wang, F.4
Woodside, M.T.5
-
101
-
-
0035942248
-
RNA tertiary interactions in the large ribosomal subunit: The A-minor motif
-
NISSEN, P., IPPOLITO, J.A., BAN, N., MOORE, P.B. & STEITZ, T. A. (2001). RNA tertiary interactions in the large ribosomal subunit: the A-minor motif. Proceedings of the National Academy of Sciences of the United States of America 98, 4899-4903.
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, pp. 4899-4903
-
-
Nissen, P.1
Ippolito, J.A.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
102
-
-
33846898497
-
Interplay of 'induced fit' and preorganization in the ligand induced folding of the aptamer domain of the guanine binding riboswitch
-
NOESKE, J., BUCK, J., FURTIG, B., NASIRI, H. R., SCHWALBE, H. & WOHNERT, J. (2007). Interplay of 'induced fit' and preorganization in the ligand induced folding of the aptamer domain of the guanine binding riboswitch. Nucleic Acids Research 35, 572-583.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 572-583
-
-
Noeske, J.1
Buck, J.2
Furtig, B.3
Nasiri, H.R.4
Schwalbe, H.5
Wohnert, J.6
-
103
-
-
13444271576
-
An intermolecular base triple as the basis of ligand specificity and affinity in the guanine-and adenine-sensing riboswitch RNAs
-
NOESKE, J., RICHTER, C., GRUNDL, M. A., NASIRI, H. R., SCHWALBE, H. & WOHNERT, J. (2005). An intermolecular base triple as the basis of ligand specificity and affinity in the guanine-and adenine-sensing riboswitch RNAs. Proceedings of the National Academy of Sciences of the United States of America 102, 1372-1377.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 1372-1377
-
-
Noeske, J.1
Richter, C.2
Grundl, M.A.3
Nasiri, H.R.4
Schwalbe, H.5
Wohnert, J.6
-
104
-
-
0037117533
-
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
-
OMER, A. D., ZIESCHE, S., EBHARDT, H. & DENNIS, P. P. (2002). In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proceedings of the National Academy of Sciences of the United States of America 99, 5289-5294.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 5289-5294
-
-
Omer, A.D.1
Ziesche, S.2
Ebhardt, H.3
Dennis, P.P.4
-
105
-
-
67650474303
-
The RFN riboswitch of Bacillus subtilis is a target for the antibiotic roseoflavin produced by Streptomyces davawensis
-
OTT, E., STOLZ, J., LEHMANN, M. & MACK, M. (2009). The RFN riboswitch of Bacillus subtilis is a target for the antibiotic roseoflavin produced by Streptomyces davawensis. RNA Biology 6, 276-280.
-
(2009)
RNA Biology
, vol.6
, pp. 276-280
-
-
Ott, E.1
Stolz, J.2
Lehmann, M.3
MacK, M.4
-
106
-
-
36248984806
-
Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined induced fit mechanism
-
OTTINK, O. M., RAMPERSAD, S. M., TESSARI, M., ZAMAN, G. J., HEUS, H. A. & WIJMENGA, S. S. (2007). Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined induced fit mechanism. RNA 13, 2202-2212.
-
(2007)
RNA
, vol.13
, pp. 2202-2212
-
-
Ottink, O.M.1
Rampersad, S.M.2
Tessari, M.3
Zaman, G.J.4
Heus, H.A.5
Wijmenga, S.S.6
-
108
-
-
79960395328
-
Bacterial transcription terminators: The RNA 3k-end chronicles
-
PETERS, J. M., VANGELOFF, A. D. & LANDICK, R. (2011). Bacterial transcription terminators: the RNA 3k-end chronicles. Journal of Molecular Biology 412, 793-813.
-
(2011)
Journal of Molecular Biology
, vol.412
, pp. 793-813
-
-
Peters, J.M.1
Vangeloff, A.D.2
Landick, R.3
-
109
-
-
80052967464
-
Structural principles of nucleoside selectivity in a 2k-deoxyguanosine riboswitch
-
PIKOVSKAYA, O., POLONSKAIA, A., PATEL, D.J. & SERGANOV, A. (2011). Structural principles of nucleoside selectivity in a 2k-deoxyguanosine riboswitch. Nature Chemical Biology 7, 748-755.
-
(2011)
Nature Chemical Biology
, vol.7
, pp. 748-755
-
-
Pikovskaya, O.1
Polonskaia, A.2
Patel, D.J.3
Serganov, A.4
-
110
-
-
77951589688
-
Cooperation between translating ribosomes and RNA polymerase in transcription elongation
-
PROSHKIN, S., RAHMOUNI, A. R., MIRONOV, A. & NUDLER, E. (2010). Cooperation between translating ribosomes and RNA polymerase in transcription elongation. Science 328, 504-508.
-
(2010)
Science
, vol.328
, pp. 504-508
-
-
Proshkin, S.1
Rahmouni, A.R.2
Mironov, A.3
Nudler, E.4
-
111
-
-
70350149960
-
Sequence-dependent folding and unfolding of ligand-bound purine riboswitches
-
PRYCHYNA, O., DAHABIEH, M.S., CHAO, J. & O'NEILL, M. A. (2009). Sequence-dependent folding and unfolding of ligand-bound purine riboswitches. Biopolymers 91, 953-965.
-
(2009)
Biopolymers
, vol.91
, pp. 953-965
-
-
Prychyna, O.1
Dahabieh, M.S.2
Chao, J.3
O'Neill, M.A.4
-
112
-
-
60149091561
-
A stress-responsive RNA switch regulates VEGFA expression
-
RAY, P. S., JIA, J., YAO, P., MAJUMDER, M., HATZOGLOU, M. & FOX, P. L. (2009). A stress-responsive RNA switch regulates VEGFA expression. Nature 457, 915-919.
-
(2009)
Nature
, vol.457
, pp. 915-919
-
-
Ray, P.S.1
Jia, J.2
Yao, P.3
Majumder, M.4
Hatzoglou, M.5
Fox, P.L.6
-
114
-
-
42549108780
-
A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism
-
REGULSKI, E. E., MOY, R. H., WEINBERG, Z., BARRICK, J. E., YAO, Z., RUZZO, W. L. & BREAKER, R. R. (2008). A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism. Molecular Microbiology 68, 918-932.
-
(2008)
Molecular Microbiology
, vol.68
, pp. 918-932
-
-
Regulski, E.E.1
Moy, R.H.2
Weinberg, Z.3
Barrick, J.E.4
Yao, Z.5
Ruzzo, W.L.6
Breaker, R.R.7
-
115
-
-
34447548824
-
Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control. Chembiochem
-
RIEDER, R., LANG, K., GRABER, D. & MICURA, R. (2007). Ligand-induced folding of the adenosine deaminase A-riboswitch and implications on riboswitch translational control. Chembiochem: A European Journal of Chemical Biology 8, 896-902.
-
(2007)
A European Journal of Chemical Biology
, vol.8
, pp. 896-902
-
-
Rieder, R.1
Lang, K.2
Graber, D.3
Micura, R.4
-
116
-
-
67650445952
-
Evidence for pseudoknot formation of class i preQ1 riboswitch aptamers
-
RIEDER, U., LANG, K., KREUTZ, C., POLACEK, N. & MICURA, R. (2009). Evidence for pseudoknot formation of class I preQ1 riboswitch aptamers. Chembiochem: A European Journal of Chemical Biology 10, 1141-1144.
-
(2009)
Chembiochem: A European Journal of Chemical Biology
, vol.10
, pp. 1141-1144
-
-
Rieder, U.1
Lang, K.2
Kreutz, C.3
Polacek, N.4
Micura, R.5
-
117
-
-
0023090935
-
Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid
-
ROSS, P., WEINHOUSE, H., ALONI, Y., MICHAELI, D., WEINBERGER-OHANA, P., MAYER, R., BRAUN, S., DE VROOM, E., VAN DER MAREL, G. A., VAN BOOM, J. H. & BENZIMAN, M. (1987). Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature 325, 279-281.
-
(1987)
Nature
, vol.325
, pp. 279-281
-
-
Ross, P.1
Weinhouse, H.2
Aloni, Y.3
Michaeli, D.4
Weinberger-Ohana, P.5
Mayer, R.6
Braun, S.7
De Vroom, E.8
Van Der Marel, G.A.9
Van Boom, J.H.10
Benziman, M.11
-
118
-
-
34247181095
-
A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain
-
ROTH, A., WINKLER, W. C., REGULSKI, E. E., LEE, B. W., LIM, J., JONA, I., BARRICK, J. E., RITWIK, A., KIM, J. N., WELZ, R., IWATA-REUYL, D. & BREAKER, R. R. (2007). A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain. Nature Structural and Molecular Biology 14, 308-317.
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, pp. 308-317
-
-
Roth, A.1
Winkler, W.C.2
Regulski, E.E.3
Lee, B.W.4
Lim, J.5
Jona, I.6
Barrick, J.E.7
Ritwik, A.8
Kim, J.N.9
Welz, R.10
Iwata-Reuyl, D.11
Breaker, R.R.12
-
119
-
-
33750044865
-
The PilZ domain is a receptor for the second messenger c-di-GMP: The PilZ domain protein YcgR controls motility in enterobacteria
-
RYJENKOV, D. A., SIMM, R., ROMLING, U. & GOMELSKY, M. (2006). The PilZ domain is a receptor for the second messenger c-di-GMP: the PilZ domain protein YcgR controls motility in enterobacteria. Journal of Biological Chemistry 281, 30310-30314.
-
(2006)
Journal of Biological Chemistry
, vol.281
, pp. 30310-30314
-
-
Ryjenkov, D.A.1
Simm, R.2
Romling, U.3
Gomelsky, M.4
-
120
-
-
2942631408
-
The tyranny of adenosine recognition among RNA aptamers to coenzyme A
-
SARAN, D., FRANK, J. & BURKE, D. H. (2003). The tyranny of adenosine recognition among RNA aptamers to coenzyme A. BMC Evolutionary Biology 3, 26.
-
(2003)
BMC Evolutionary Biology
, vol.3
, pp. 26
-
-
Saran, D.1
Frank, J.2
Burke, D.H.3
-
121
-
-
0027180473
-
An RNA motif that binds ATP
-
SASSANFAR, M. & SZOSTAK, J. W. (1993). An RNA motif that binds ATP. Nature 364, 550-553.
-
(1993)
Nature
, vol.364
, pp. 550-553
-
-
Sassanfar, M.1
Szostak, J.W.2
-
122
-
-
0035684981
-
Definition of the Bacillus subtilis PurR operator using genetic and bioinformatic tools and expansion of the PurR regulon with gly A, gua C, pbu G, xpt-pbu X, yqhZ-fol D, and pbuO
-
SAXILD, H. H., BRUNSTEDT, K., NIELSEN, K. I., JARMER, H. & NYGAARD, P. (2001). Definition of the Bacillus subtilis PurR operator using genetic and bioinformatic tools and expansion of the PurR regulon with gly A, gua C, pbu G, xpt-pbu X, yqhZ-fol D, and pbuO. Journal of Bacteriology 183, 6175-6183.
-
(2001)
Journal of Bacteriology
, vol.183
, pp. 6175-6183
-
-
Saxild, H.H.1
Brunstedt, K.2
Nielsen, K.I.3
Jarmer, H.4
Nygaard, P.5
-
123
-
-
3142758746
-
A small aptamer with strong and specific recognition of the triphosphate of ATP
-
SAZANI, P. L., LARRALDE, R. & SZOSTAK, J. W. (2004). A small aptamer with strong and specific recognition of the triphosphate of ATP. Journal of the American Chemical Society 126, 8370-8371.
-
(2004)
Journal of the American Chemical Society
, vol.126
, pp. 8370-8371
-
-
Sazani, P.L.1
Larralde, R.2
Szostak, J.W.3
-
124
-
-
8444229753
-
Strategies for RNA folding and assembly. Nature Reviews
-
SCHROEDER, R., BARTA, A. & SEMRAD, K. (2004). Strategies for RNA folding and assembly. Nature Reviews. Molecular Cell Biology 5, 908-919.
-
(2004)
Molecular Cell Biology
, vol.5
, pp. 908-919
-
-
Schroeder, R.1
Barta, A.2
Semrad, K.3
-
125
-
-
10644250950
-
Structural basis for discriminative regulation of gene expression by adenine-and guanine-sensing mRNAs
-
SERGANOV, A., YUAN, Y. R., PIKOVSKAYA, O., POLONSKAIA, A., MALININA, L., PHAN, A. T., HOBARTNER, C., MICURA, R., BREAKER, R. R. & PATEL, D. J. (2004). Structural basis for discriminative regulation of gene expression by adenine-and guanine-sensing mRNAs. Chemistry and Biology 11, 1729-1741.
-
(2004)
Chemistry and Biology
, vol.11
, pp. 1729-1741
-
-
Serganov, A.1
Yuan, Y.R.2
Pikovskaya, O.3
Polonskaia, A.4
Malinina, L.5
Phan, A.T.6
Hobartner, C.7
Micura, R.8
Breaker, R.R.9
Patel, D.J.10
-
126
-
-
79959438183
-
Assembly of bacterial ribosomes
-
SHAJANI, Z., SYKES, M. T. & WILLIAMSON, J. R. (2011). Assembly of bacterial ribosomes. Annual Review of Biochemistry 80, 501-526.
-
(2011)
Annual Review of Biochemistry
, vol.80
, pp. 501-526
-
-
Shajani, Z.1
Sykes, M.T.2
Williamson, J.R.3
-
127
-
-
80053311154
-
Differential analog binding by two classes of c-di-GMP riboswitches
-
SHANAHAN, C. A., GAFFNEY, B. L., JONES, R. A. & STROBEL, S. A. (2011). Differential analog binding by two classes of c-di-GMP riboswitches. Journal of the American Chemical Society 133, 15578-15592.
-
(2011)
Journal of the American Chemical Society
, vol.133
, pp. 15578-15592
-
-
Shanahan, C.A.1
Gaffney, B.L.2
Jones, R.A.3
Strobel, S.A.4
-
128
-
-
0022570121
-
Novel form of transcription attenuation regulates expression the Bacillus subtilis tryptophan operon
-
SHIMOTSU, H., KURODA, M. I., YANOFSKY, C. & HENNER, D. J. (1986). Novel form of transcription attenuation regulates expression the Bacillus subtilis tryptophan operon. Journal of Bacteriology 166, 461-471.
-
(1986)
Journal of Bacteriology
, vol.166
, pp. 461-471
-
-
Shimotsu, H.1
Kuroda, M.I.2
Yanofsky, C.3
Henner, D.J.4
-
129
-
-
0037377340
-
Rube Goldberg goes (ribo)-nuclear? Molecular switches and sensors made from RNA
-
SILVERMAN, S. K. (2003). Rube Goldberg goes (ribo)-nuclear? Molecular switches and sensors made from RNA. RNA 9, 377-383.
-
(2003)
RNA
, vol.9
, pp. 377-383
-
-
Silverman, S.K.1
-
130
-
-
77952507419
-
Reprogramming bacteria to seek and destroy an herbicide
-
SINHA, J., REYES, S.J. & GALLIVAN, J.P. (2010). Reprogramming bacteria to seek and destroy an herbicide. Nature Chemical Biology 6, 464-470.
-
(2010)
Nature Chemical Biology
, vol.6
, pp. 464-470
-
-
Sinha, J.1
Reyes, S.J.2
Gallivan, J.P.3
-
131
-
-
79957467767
-
From SELEX to cell dual selections for synthetic riboswitches
-
SINHA, J., TOPP, S. & GALLIVAN, J. P. (2011). From SELEX to cell dual selections for synthetic riboswitches. Methods in Enzymology 497, 207-220.
-
(2011)
Methods in Enzymology
, vol.497
, pp. 207-220
-
-
Sinha, J.1
Topp, S.2
Gallivan, J.P.3
-
132
-
-
71449108155
-
Structural basis of ligand binding by a c-di-GMP riboswitch
-
SMITH, K. D., LIPCHOCK, S. V., AMES, T. D., WANG, J., BREAKER, R. R. & STROBEL, S. A. (2009). Structural basis of ligand binding by a c-di-GMP riboswitch. Nature Structural and Molecular Biology 16, 1218-1223.
-
(2009)
Nature Structural and Molecular Biology
, vol.16
, pp. 1218-1223
-
-
Smith, K.D.1
Lipchock, S.V.2
Ames, T.D.3
Wang, J.4
Breaker, R.R.5
Strobel, S.A.6
-
133
-
-
77956021842
-
Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch
-
SMITH, K.D., LIPCHOCK, S.V., LIVINGSTON, A.L., SHANAHAN, C. A. & STROBEL, S. A. (2010). Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch. Biochemistry 49, 7351-7359.
-
(2010)
Biochemistry
, vol.49
, pp. 7351-7359
-
-
Smith, K.D.1
Lipchock, S.V.2
Livingston, A.L.3
Shanahan, C.A.4
Strobel, S.A.5
-
134
-
-
79956338019
-
Structural basis of differential ligand recognition by two classes of bis-(3k-5k)-cyclic dimeric guanosine monophosphate-binding ribo-switches
-
SMITH, K. D., SHANAHAN, C.A., MOORE, E.L., SIMON, A. C. & STROBEL, S. A. (2011). Structural basis of differential ligand recognition by two classes of bis-(3k-5k)-cyclic dimeric guanosine monophosphate-binding ribo-switches. Proceedings of the National Academy of Sciences of the United States of America 108, 7757-7762.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 7757-7762
-
-
Smith, K.D.1
Shanahan, C.A.2
Moore, E.L.3
Simon, A.C.4
Strobel, S.A.5
-
135
-
-
80053542128
-
A powerful approach for the selection of 2-aminopurine substitution sites to investigate RNA folding
-
SOULIERE, M.F., HALLER, A., RIEDER, R. & MICURA, R. (2011). A powerful approach for the selection of 2-aminopurine substitution sites to investigate RNA folding. Journal of the American Chemical Society 133, 16161-16167.
-
(2011)
Journal of the American Chemical Society
, vol.133
, pp. 16161-16167
-
-
Souliere, M.F.1
Haller, A.2
Rieder, R.3
Micura, R.4
-
136
-
-
66449089224
-
The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain
-
SPITALE, R. C., TORELLI, A. T., KRUCINSKA, J., BANDARIAN, V. & WEDEKIND, J. E. (2009). The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain. Journal of Biological Chemistry 284, 11012-11016.
-
(2009)
Journal of Biological Chemistry
, vol.284
, pp. 11012-11016
-
-
Spitale, R.C.1
Torelli, A.T.2
Krucinska, J.3
Bandarian, V.4
Wedekind, J.E.5
-
137
-
-
22744455135
-
Pseudoknots: RNA structures with diverse functions
-
STAPLE, D. W. & BUTCHER, S. E. (2005). Pseudoknots: RNA structures with diverse functions. PLoS Biology 3, e213.
-
(2005)
PLoS Biology
, vol.3
-
-
Staple, D.W.1
Butcher, S.E.2
-
138
-
-
79960562804
-
Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble
-
STELZER, A.C., FRANK, A.T., KRATZ, J.D., SWANSON, M. D., GONZALEZ-HERNANDEZ, M.J., LEE, J., ANDRICIOAEI, I., MARKOVITZ, D.M. & AL-HASHIMI, H. M. (2011). Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble. Nature Chemical Biology 7, 553-559.
-
(2011)
Nature Chemical Biology
, vol.7
, pp. 553-559
-
-
Stelzer, A.C.1
Frank, A.T.2
Kratz, J.D.3
Swanson, M.D.4
Gonzalez-Hernandez, M.J.5
Lee, J.6
Andricioaei, I.7
Markovitz, D.M.8
Al-Hashimi, H.M.9
-
139
-
-
41649108293
-
Ligand-dependent folding of the three-way junction in the purine riboswitch
-
STODDARD, C. D., GILBERT, S. D. & BATEY, R. T. (2008). Ligand-dependent folding of the three-way junction in the purine riboswitch. RNA 14, 675-684.
-
(2008)
RNA
, vol.14
, pp. 675-684
-
-
Stoddard, C.D.1
Gilbert, S.D.2
Batey, R.T.3
-
140
-
-
77954627025
-
Free state conformational sampling of the SAM-I riboswitch aptamer domain
-
STODDARD, C. D., MONTANGE, R. K., HENNELLY, S. P., RAMBO, R.P., SANBONMATSU, K.Y. & BATEY, R.T. (2010). Free state conformational sampling of the SAM-I riboswitch aptamer domain. Structure 18, 787-797.
-
(2010)
Structure
, vol.18
, pp. 787-797
-
-
Stoddard, C.D.1
Montange, R.K.2
Hennelly, S.P.3
Rambo, R.P.4
Sanbonmatsu, K.Y.5
Batey, R.T.6
-
141
-
-
80053019485
-
Regulation by small RNAs in bacteria: Expanding frontiers
-
STORZ, G., VOGEL, J. & WASSARMAN, K.M. (2011). Regulation by Small RNAs in Bacteria: expanding Frontiers. Molecular Cell 43, 880-891.
-
(2011)
Molecular Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
142
-
-
28844492215
-
Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine
-
SUDARSAN, N., COHEN-CHALAMISH, S., NAKAMURA, S., EMILSSON, G. M. & BREAKER, R. R. (2005). Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine. Chemistry and Biology 12, 1325-1335.
-
(2005)
Chemistry and Biology
, vol.12
, pp. 1325-1335
-
-
Sudarsan, N.1
Cohen-Chalamish, S.2
Nakamura, S.3
Emilsson, G.M.4
Breaker, R.R.5
-
143
-
-
47749152941
-
Riboswitches in eubacteria sense the second messenger cyclic di-GMP
-
SUDARSAN, N., LEE, E. R., WEINBERG, Z., MOY, R. H., KIM, J. N., LINK, K.H. & BREAKER, R.R. (2008). Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321, 411-413.
-
(2008)
Science
, vol.321
, pp. 411-413
-
-
Sudarsan, N.1
Lee, E.R.2
Weinberg, Z.3
Moy, R.H.4
Kim, J.N.5
Link, K.H.6
Breaker, R.R.7
-
144
-
-
43149103943
-
Targeting RNA with small molecules
-
THOMAS, J. R. & HERGENROTHER, P. J. (2008). Targeting RNA with small molecules. Chemical Reviews 108, 1171-1224.
-
(2008)
Chemical Reviews
, vol.108
, pp. 1171-1224
-
-
Thomas, J.R.1
Hergenrother, P.J.2
-
145
-
-
38649086717
-
Natural variability in S-adenosylmethio-nine (SAM)-dependent riboswitches: S-box elements in Bacillus subtilis exhibit differential sensitivity to SAM in vivo and in vitro
-
TOMSIC, J., MCDANIEL, B.A., GRUNDY, F. J. & HENKIN, T. M. (2008). Natural variability in S-adenosylmethio-nine (SAM)-dependent riboswitches: S-box elements in Bacillus subtilis exhibit differential sensitivity to SAM In vivo and in vitro. Journal of Bacteriology 190, 823-833.
-
(2008)
Journal of Bacteriology
, vol.190
, pp. 823-833
-
-
Tomsic, J.1
McDaniel, B.A.2
Grundy, F.J.3
Henkin, T.M.4
-
146
-
-
80054074740
-
The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer
-
TRAUSCH, J.J., CERES, P., REYES, F. E. & BATEY, R. T. (2011). The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer. Structure 19, 1413-1423.
-
(2011)
Structure
, vol.19
, pp. 1413-1423
-
-
Trausch, J.J.1
Ceres, P.2
Reyes, F.E.3
Batey, R.T.4
-
147
-
-
44949214942
-
Regulation of pyrimidine biosynthetic gene expression in bacteria: Repression without repressors
-
TURNBOUGH, C. L., Jr. & SWITZER, R. L. (2008). Regulation of pyrimidine biosynthetic gene expression in bacteria: repression without repressors. Microbiology and Molecular Biology Reviews: MMBR 72, 266-300.
-
(2008)
Microbiology and Molecular Biology Reviews: MMBR
, vol.72
, pp. 266-300
-
-
Turnbough, Jr.C.L.1
Switzer, R.L.2
-
148
-
-
30944458838
-
Atomic level architecture of group i introns revealed
-
VICENS, Q. & CECH, T. R. (2006). Atomic level architecture of group I introns revealed. Trends in Biochemical Sciences 31, 41-51.
-
(2006)
Trends in Biochemical Sciences
, vol.31
, pp. 41-51
-
-
Vicens, Q.1
Cech, T.R.2
-
149
-
-
80455178803
-
Molecular sensing by the aptamer domain of the FMN riboswitch: A general model for ligand binding by con-formational selection
-
VICENS, Q., MONDRAGON, E. & BATEY, R.T. (2011). Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by con-formational selection. Nucleic Acids Research.
-
(2011)
Nucleic Acids Research
-
-
Vicens, Q.1
Mondragon, E.2
Batey, R.T.3
-
150
-
-
75649124956
-
Queuosine modification of tRNA: Its divergent role in cellular machinery
-
VINAYAK, M. & PATHAK, C. (2010). Queuosine modification of tRNA: its divergent role in cellular machinery. Bioscience Reports 30, 135-148.
-
(2010)
Bioscience Reports
, vol.30
, pp. 135-148
-
-
Vinayak, M.1
Pathak, C.2
-
151
-
-
0347418195
-
Riboswitches: The oldest mechanism for the regulation of gene expression?
-
VITRESCHAK, A. G., RODIONOV, D. A., MIRONOV, A. A. & GELFAND, M. S. (2004). Riboswitches: the oldest mechanism for the regulation of gene expression? Trends in Genetics 20, 44-50.
-
(2004)
Trends in Genetics
, vol.20
, pp. 44-50
-
-
Vitreschak, A.G.1
Rodionov, D.A.2
Mironov, A.A.3
Gelfand, M.S.4
-
152
-
-
34547508202
-
Directing macromolecular conformation through halogen bonds
-
VOTH, A. R., HAYS, F. A. & HO, P. S. (2007). Directing macromolecular conformation through halogen bonds. Proceedings of the National Academy of Sciences of the United States of America 104, 6188-6193.
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, pp. 6188-6193
-
-
Voth, A.R.1
Hays, F.A.2
Ho, P.S.3
-
153
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
WANG, K. C. & CHANG, H. Y. (2011). Molecular mechanisms of long noncoding RNAs. Molecular cell 43, 904-914.
-
(2011)
Molecular Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
154
-
-
79960611669
-
Exploring RNA structural codes with SHAPE chemistry
-
WEEKS, K. M. & MAUGER, D. M. (2011). Exploring RNA Structural Codes with SHAPE Chemistry. Accounts of Chemical Research 44, 1280-1291.
-
(2011)
Accounts of Chemical Research
, vol.44
, pp. 1280-1291
-
-
Weeks, K.M.1
Mauger, D.M.2
-
155
-
-
4844227634
-
Selection and evolution of NTP-specific aptamers
-
WEILL, L., LOUIS, D. & SARGUEIL, B. (2004). Selection and evolution of NTP-specific aptamers. Nucleic Acids Research 32, 5045-5058.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 5045-5058
-
-
Weill, L.1
Louis, D.2
Sargueil, B.3
-
156
-
-
34547873145
-
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
-
WEINBERG, Z., BARRICK, J. E., YAO, Z., ROTH, A., KIM, J. N., GORE, J., WANG, J. X., LEE, E. R., BLOCK, K. F., SUDARSAN, N., NEPH, S., TOMPA, M., RUZZO, W. L. & BREAKER, R. R. (2007). Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline. Nucleic Acids Research 35, 4809-4819.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 4809-4819
-
-
Weinberg, Z.1
Barrick, J.E.2
Yao, Z.3
Roth, A.4
Kim, J.N.5
Gore, J.6
Wang, J.X.7
Lee, E.R.8
Block, K.F.9
Sudarsan, N.10
Neph, S.11
Tompa, M.12
Ruzzo, W.L.13
Breaker, R.R.14
-
157
-
-
77951606278
-
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
-
WEINBERG, Z., WANG, J. X., BOGUE, J., YANG, J., CORBINO, K., MOY, R. H. & BREAKER, R. R. (2010). Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes. Genome Biology 11, R31.
-
(2010)
Genome Biology
, vol.11
-
-
Weinberg, Z.1
Wang, J.X.2
Bogue, J.3
Yang, J.4
Corbino, K.5
Moy, R.H.6
Breaker, R.R.7
-
158
-
-
26444620938
-
The kinetics of ligand binding by an adenine-sensing riboswitch
-
WICKISER, J.K., CHEAH, M.T., BREAKER, R.R. & CROTHERS, D. M. (2005a). The kinetics of ligand binding by an adenine-sensing riboswitch. Biochemistry 44, 13404-13414.
-
(2005)
Biochemistry
, vol.44
, pp. 13404-13414
-
-
Wickiser, J.K.1
Cheah, M.T.2
Breaker, R.R.3
Crothers, D.M.4
-
159
-
-
15944382675
-
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
-
WICKISER, J.K., WINKLER, W.C., BREAKER, R.R. & CROTHERS, D. M. (2005b). The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Molecular Cell 18, 49-60.
-
(2005)
Molecular Cell
, vol.18
, pp. 49-60
-
-
Wickiser, J.K.1
Winkler, W.C.2
Breaker, R.R.3
Crothers, D.M.4
-
160
-
-
16344370497
-
RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts
-
WILKINSON, K. A., MERINO, E. J. & WEEKS, K. M. (2005). RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts. Journal of the American Chemical Society 127, 4659-4667.
-
(2005)
Journal of the American Chemical Society
, vol.127
, pp. 4659-4667
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
161
-
-
33947720028
-
Selective 2k-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
-
WILKINSON, K. A., MERINO, E. J. & WEEKS, K. M. (2006). Selective 2k-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nature Protocols 1, 1610-1616.
-
(2006)
Nature Protocols
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
162
-
-
0142075327
-
Genetic control by metabolite-binding riboswitches. Chembiochem
-
WINKLER, W. C. & BREAKER, R. R. (2003). Genetic control by metabolite-binding riboswitches. Chembiochem: A European Journal of Chemical Biology 4, 1024-1032.
-
(2003)
A European Journal of Chemical Biology
, vol.4
, pp. 1024-1032
-
-
Winkler, W.C.1
Breaker, R.R.2
-
163
-
-
0034897731
-
The GA motif: An RNA element common to bacterial antitermination systems, r RNA, and eu-karyotic RNAs
-
WINKLER, W. C., GRUNDY, F. J., MURPHY, B. A. & HENKIN, T. M. (2001). The GA motif: an RNA element common to bacterial antitermination systems, r RNA, and eu-karyotic RNAs. RNA 7, 1165-1172.
-
(2001)
RNA
, vol.7
, pp. 1165-1172
-
-
Winkler, W.C.1
Grundy, F.J.2
Murphy, B.A.3
Henkin, T.M.4
-
164
-
-
57549107708
-
Folding and unfolding single RNA molecules under tension
-
WOODSIDE, M.T., GARCIA-GARCIA, C. & BLOCK, S.M. (2008). Folding and unfolding single RNA molecules under tension. Current Opinion in Chemical Biology 12, 640-646.
-
(2008)
Current Opinion in Chemical Biology
, vol.12
, pp. 640-646
-
-
Woodside, M.T.1
Garcia-Garcia, C.2
Block, S.M.3
-
165
-
-
33846929128
-
Encoding folding paths of RNA switches
-
XAYAPHOUMMINE, A., VIASNOFF, V., HARLEPP, S. & ISAMBERT, H. (2007). Encoding folding paths of RNA switches. Nucleic Acids Research 35, 614-622.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 614-622
-
-
Xayaphoummine, A.1
Viasnoff, V.2
Harlepp, S.3
Isambert, H.4
-
166
-
-
79961096926
-
Getting past the RNA world: The initial Darwinian ancestor
-
YARUS, M. (2011). Getting past the RNA world: the initial Darwinian ancestor. Cold Spring Harbor Perspectives in Biology 3, a003590.
-
(2011)
Cold Spring Harbor Perspectives in Biology
, vol.3
-
-
Yarus, M.1
-
167
-
-
78751662374
-
RNA folding in living cells
-
ZEMORA, G. & WALDSICH, C. (2010). RNA folding in living cells. RNA Biology 7, 634-641.
-
(2010)
RNA Biology
, vol.7
, pp. 634-641
-
-
Zemora, G.1
Waldsich, C.2
-
168
-
-
78049276834
-
Ribozymes and riboswitches: Modulation of RNA function by small molecules
-
ZHANG, J., LAU, M. W. & FERRE-D'AMARE, A. R. (2010). Ribozymes and riboswitches: modulation of RNA function by small molecules. Biochemistry 49, 9123-9131.
-
(2010)
Biochemistry
, vol.49
, pp. 9123-9131
-
-
Zhang, J.1
Lau, M.W.2
Ferre-D'Amare, A.R.3
-
169
-
-
34247159140
-
Direct revelation of multiple conformations in RNA by femtosecond dynamics
-
ZHAO, L. & XIA, T. (2007). Direct revelation of multiple conformations in RNA by femtosecond dynamics. Journal of the American Chemical Society 129, 4118-4119.
-
(2007)
Journal of the American Chemical Society
, vol.129
, pp. 4118-4119
-
-
Zhao, L.1
Xia, T.2
-
170
-
-
70349279950
-
Probing RNA conformational dynamics and heterogeneity using femtosecond time-resolved fluorescence spectroscopy
-
ZHAO, L. & XIA, T. (2009). Probing RNA conformational dynamics and heterogeneity using femtosecond time-resolved fluorescence spectroscopy. Methods 49, 128-135.
-
(2009)
Methods
, vol.49
, pp. 128-135
-
-
Zhao, L.1
Xia, T.2
|