The tyranny of adenosine recognition among RNA aptamers to coenzyme A

BMC Evolutionary Biology

Volumn 3, Issue , 2003, Pages

  Saran, Dayal ^a   Frank, Joseph ^a   Burke, Donald H ^a  

^a INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; AMIDE; COENZYME A; DISULFIDE; OLIGORIBONUCLEOTIDE; RNA;

AFFINITY CHROMATOGRAPHY; BINDING SITE; CHEMISTRY; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

ADENOSINE; AMIDES; BASE SEQUENCE; BINDING SITES; CHROMATOGRAPHY, AFFINITY; COENZYME A; DISULFIDES; MOLECULAR SEQUENCE DATA; OLIGORIBONUCLEOTIDES; RNA;

EID: 2942631408     PISSN: 14712148     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2148-3-26     Document Type: Review

References (18)

1. Sassanfar M, Szostak JW: An RNA motif that binds ATP. Nature 1993, 364:550-3.
2. Huizenga DE, Szostak JW: A DNA aptamer that binds adenosine and ATP. Biochemistry 1995, 34:656-65.
3. Burgstaller P, Famulok M: Isolation of RNA aptamers for Biological Cofactors by In Vitro Selection. Angew Chem Int Ed Engl 1994, 33:1084-1087.
4. Burke DH, Gold L: RNA aptamers to the adenosine moiety of S-adenosyl methionine: structural inferences from variations on a theme and the reproducibility of SELEX. Nucleic Acids Res 1997, 25:2020-4.
5. Lato SM, Ozerova ND, He K, Sergueeva Z, Shaw BR, Burke DH: Boron-containing aptamers to ATP. Nucleic Acids Res 2002, 30:1401-7.
6. Dieckmann T, Suzuki E, Nakamura GK, Feigon J: Solution structure of an ATP-binding RNA aptamer reveals a novel fold. RNA 1996, 2:628-40.
7. Patel DJ: Structural analysis of nucleic acid aptamers. Curr Opin Chem Biol 1997, 1:32-46.
8. Burke DH, Hoffman DC: A novel acidophilic RNA motif that recognizes coenzyme A. Biochemistry 1998, 37:4653-63.
9. Jadhav VR, Yarus M: Acyl-CoAs from coenzyme ribozymes. Biochemistry 2002, 41:723-9.
10. Burke DH, Scates L, Andrews K, L G: Bent pseudoknots and novel RNA inhibitors of type 1 human immunodeficiency virus (HIV-1) reverse transcriptase. J Mol Biol 1996, 264:650-66.
11. Burke DH, Hoffman DC, Brown A, Hansen M, Pardi A, Gold L: RNA aptamers to the peptidyl transferase inhibitor chloramphenicol. Chem Biol 1997, 4:833-43.
12. Roychowdhury-Saha M, Lato SM, Shank ED, Burke DH: Flavin recognition by an RNA aptamer targeted toward FAD. Biochemistry 2002, 41:2492-9.
13. Koizumi M, Breaker RR: Molecular recognition of cAMP by an RNA aptamer. Biochemisty 2000, 39(30):983-92.
14. Illangasekare M, Sanchez G, Nickles T, Yarus M: Aminoacyl-RNA synthesis catalyzed by an RNA. Science 1995, 267:643-7.
15. Illangasekare M, Yarus M: Small-molecule-substrate interactions with a self-aminoacylating ribozyme. J Mol Biol 1997, 268:631-9.
16. Jenne A, Famulok M: A novel ribozyme with ester transferase activity. Chem Biol 1998, 5:23-24.
17. Wiegand T, Janssen R, Eaton B: Selection of RNA amide synthases. Chem Biol 1997, 4:675-83.
18. Li Y, Breaker R: Phosphorylating DNA with DNA. Proc Natl Acad Sci U S A 1999, 96:2746-51.