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Volumn 190, Issue 3, 2008, Pages 823-833

Natural variability in S-adenosylmethionine (SAM)-dependent riboswitches: S-box elements in Bacillus subtilis exhibit differential sensitivity to SAM in vivo and in vitro

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; DNA; GENE PRODUCT; METHIONINE; METHIONINE ADENOSYLTRANSFERASE; RNA; RNA POLYMERASE; S ADENOSYLMETHIONINE;

EID: 38649086717     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01034-07     Document Type: Article
Times cited : (90)

References (48)
  • 1
    • 0001134202 scopus 로고
    • Requirements for transformation in Bacillus subtilis
    • Anagnostopoulos, C., and J. Spizizen. 1961. Requirements for transformation in Bacillus subtilis. J. Bacteriol. 81:741-746.
    • (1961) J. Bacteriol , vol.81 , pp. 741-746
    • Anagnostopoulos, C.1    Spizizen, J.2
  • 2
    • 0036724254 scopus 로고    scopus 로고
    • Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine
    • Auger, S., A. Danchin, and I. Martin-Verstraete. 2002. Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine. J. Bacteriol. 184:5179-5186.
    • (2002) J. Bacteriol , vol.184 , pp. 5179-5186
    • Auger, S.1    Danchin, A.2    Martin-Verstraete, I.3
  • 3
    • 0036175114 scopus 로고    scopus 로고
    • The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination
    • Auger, S., W. H. Yuen, A. Danchin, and I. Martin-Verstraete. 2002. The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination. Microbiology 148:507-518.
    • (2002) Microbiology , vol.148 , pp. 507-518
    • Auger, S.1    Yuen, W.H.2    Danchin, A.3    Martin-Verstraete, I.4
  • 5
    • 0038476616 scopus 로고    scopus 로고
    • The riboswitch-mediated control of sulfur metabolism in bacteria
    • Epshtein, V., A. S. Mironov, and E. Nudler. 2003. The riboswitch-mediated control of sulfur metabolism in bacteria. Proc. Natl. Acad. Sci. USA 100:5052-5056.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 5052-5056
    • Epshtein, V.1    Mironov, A.S.2    Nudler, E.3
  • 6
    • 33644792751 scopus 로고    scopus 로고
    • MK box is a new SAM-binding RNA for translational regulation of SAM synthetase
    • MK box is a new SAM-binding RNA for translational regulation of SAM synthetase. Nat. Struct. Mol. Biol. 13:226-233.
    • (2006) Nat. Struct. Mol. Biol , vol.13 , pp. 226-233
    • Fuchs, R.T.1    Grundy, F.J.2    Henkin, T.M.3
  • 8
    • 0031735563 scopus 로고    scopus 로고
    • The S box regulon: A new global transcription termination control system for methionine and cysteine biosynthesis genes in Gram-positive bacteria
    • Grundy, F. J., and T. M. Henkin. 1998. The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in Gram-positive bacteria. Mol. Microbiol. 30:737-749.
    • (1998) Mol. Microbiol , vol.30 , pp. 737-749
    • Grundy, F.J.1    Henkin, T.M.2
  • 9
    • 0002078450 scopus 로고    scopus 로고
    • Synthesis of serine, glycine, cysteine and methionine
    • A. L. Sonenshein, J. A. Hoch, and R. Losick ed, American Society for Microbiology, Washington, DC
    • Grundy, F. J., and T. M. Henkin. 2002. Synthesis of serine, glycine, cysteine and methionine, p. 245-254. In A. L. Sonenshein, J. A. Hoch, and R. Losick (ed.), Bacillus subtilis and its closest relatives: from genes to cells. American Society for Microbiology, Washington, DC.
    • (2002) Bacillus subtilis and its closest relatives: From genes to cells , pp. 245-254
    • Grundy, F.J.1    Henkin, T.M.2
  • 10
    • 0012567905 scopus 로고    scopus 로고
    • The T box and S box transcription termination control systems
    • Grundy, F. J., and T. M. Henkin. 2003. The T box and S box transcription termination control systems. Front. Biosci. 8:d20-d31.
    • (2003) Front. Biosci , vol.8
    • Grundy, F.J.1    Henkin, T.M.2
  • 11
    • 1842558364 scopus 로고    scopus 로고
    • Regulation of gene expression by effectors that bind to RNA
    • Grundy, F. J., and T. M. Henkin. 2004. Regulation of gene expression by effectors that bind to RNA. Curr. Opin. Microbiol. 7:126-131.
    • (2004) Curr. Opin. Microbiol , vol.7 , pp. 126-131
    • Grundy, F.J.1    Henkin, T.M.2
  • 12
    • 33750874085 scopus 로고    scopus 로고
    • From ribosome to riboswitch: Control of gene expression in bacteria by RNA structural rearrangements
    • Grundy, F. J., and T. M. Henkin. 2006. From ribosome to riboswitch: control of gene expression in bacteria by RNA structural rearrangements. Crit. Rev. Biochem. Mol. Biol. 41:329-338.
    • (2006) Crit. Rev. Biochem. Mol. Biol , vol.41 , pp. 329-338
    • Grundy, F.J.1    Henkin, T.M.2
  • 13
    • 0036529579 scopus 로고    scopus 로고
    • Sequence requirements for terminators and antiterminators in the T box transcription antitermination system: Disparity between conservation and functional requirements
    • Grundy, F. J., T. R. Moir, M. T. Haldeman, and T. M. Henkin. 2002. Sequence requirements for terminators and antiterminators in the T box transcription antitermination system: disparity between conservation and functional requirements. Nucleic Acids Res. 30:1646-1655.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1646-1655
    • Grundy, F.J.1    Moir, T.R.2    Haldeman, M.T.3    Henkin, T.M.4
  • 14
    • 0027377245 scopus 로고
    • Regulation of the Bacillus subtilis acetate kinase gene by CcpA
    • Grundy, F. J., D. A. Waters, S. H. Allen, and T. M. Henkin. 1993. Regulation of the Bacillus subtilis acetate kinase gene by CcpA. J. Bacteriol. 175:348-355.
    • (1993) J. Bacteriol , vol.175 , pp. 348-355
    • Grundy, F.J.1    Waters, D.A.2    Allen, S.H.3    Henkin, T.M.4
  • 15
    • 33746920364 scopus 로고    scopus 로고
    • Evidence for preorganization of the glmS ribozyme ligand binding pocket
    • Hampel, K. J., and M. M. Tinsley. 2006. Evidence for preorganization of the glmS ribozyme ligand binding pocket. Biochemistry 45:7861-7871.
    • (2006) Biochemistry , vol.45 , pp. 7861-7871
    • Hampel, K.J.1    Tinsley, M.M.2
  • 16
    • 0021331731 scopus 로고
    • Genetic mapping of a mutation causing an alteration in Bacillus subtilis ribosomal protein S4
    • Henkin, T. M., and G. H. Chambtiss. 1984. Genetic mapping of a mutation causing an alteration in Bacillus subtilis ribosomal protein S4. Mol. Gen. Genet. 193:364-369.
    • (1984) Mol. Gen. Genet , vol.193 , pp. 364-369
    • Henkin, T.M.1    Chambtiss, G.H.2
  • 17
    • 34250613153 scopus 로고    scopus 로고
    • Sensing metabolic signals with nascent RNA transcripts: The T box and S box riboswitches as paradigms
    • Henkin, T. M., and F. J. Grundy. 2006. Sensing metabolic signals with nascent RNA transcripts: the T box and S box riboswitches as paradigms. Cold Spring Harb. Symp. Quant. Biol. 71:231-237.
    • (2006) Cold Spring Harb. Symp. Quant. Biol , vol.71 , pp. 231-237
    • Henkin, T.M.1    Grundy, F.J.2
  • 18
    • 1342324041 scopus 로고    scopus 로고
    • The metNPQ operon of Bacillus subtilis encodes an ABC permease transporting methionine sulfoxide, D- and L-methionine
    • Hullo, M., S. Auger, E. Dassa, A. Danchin, and I. Martin-Verstraete. 2004. The metNPQ operon of Bacillus subtilis encodes an ABC permease transporting methionine sulfoxide, D- and L-methionine. Res. Microbiol. 155:80-86.
    • (2004) Res. Microbiol , vol.155 , pp. 80-86
    • Hullo, M.1    Auger, S.2    Dassa, E.3    Danchin, A.4    Martin-Verstraete, I.5
  • 19
    • 0037381618 scopus 로고    scopus 로고
    • RNA sensors and riboswitches: Self-regulating messages
    • Lai, E. C. 2003. RNA sensors and riboswitches: self-regulating messages. Curr. Biol. 13:R285-R291.
    • (2003) Curr. Biol , vol.13
    • Lai, E.C.1
  • 21
    • 32044473109 scopus 로고    scopus 로고
    • Molecular-recognition characteristics of SAM-binding riboswitches
    • Lim, J., W. C. Winkler, S. Nakamura, V. Scott, and R. R. Breaker. 2006. Molecular-recognition characteristics of SAM-binding riboswitches. Angew. Chem. 45:964-968.
    • (2006) Angew. Chem , vol.45 , pp. 964-968
    • Lim, J.1    Winkler, W.C.2    Nakamura, S.3    Scott, V.4    Breaker, R.R.5
  • 22
    • 0033813446 scopus 로고    scopus 로고
    • Transcriptional control of the sulfur-regulated cysH operon, containing genes involved in L-cysteine biosynthesis in Bacillus subtilis
    • Mansilla, M. C., D. Albanesi, and D. deMendoza. 2000. Transcriptional control of the sulfur-regulated cysH operon, containing genes involved in L-cysteine biosynthesis in Bacillus subtilis. J. Bacteriol. 182:5885-5892.
    • (2000) J. Bacteriol , vol.182 , pp. 5885-5892
    • Mansilla, M.C.1    Albanesi, D.2    deMendoza, D.3
  • 23
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D. H., J. Sabina, M. Zuker, and D. H. Turner. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288:911-940.
    • (1999) J. Mol. Biol , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 24
    • 0000992903 scopus 로고    scopus 로고
    • One-carbon metabolism
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger ed, 2nd ed. American Society for Microbiology, Washington, DC
    • Matthews, R. G. 1996. One-carbon metabolism, p. 600-611. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. American Society for Microbiology, Washington, DC.
    • (1996) Escherichia coli and Salmonella: Cellular and molecular biology , pp. 600-611
    • Matthews, R.G.1
  • 25
    • 0037453069 scopus 로고    scopus 로고
    • Transcription termination control of the S box system: Direct measurement of S-adenosylmethionine by the leader RNA
    • McDaniel, B. A., F. J. Grundy, I. Artsimovitch, and T. M. Henkin. 2003. Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA. Proc. Natl. Acad. Sci. USA 100:3083-3088.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 3083-3088
    • McDaniel, B.A.1    Grundy, F.J.2    Artsimovitch, I.3    Henkin, T.M.4
  • 26
    • 23744510923 scopus 로고    scopus 로고
    • A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination
    • McDaniel, B. A., F. J. Grundy, and T. M. Henkin. 2005. A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination. Mol. Microbiol. 57:1008-1021.
    • (2005) Mol. Microbiol , vol.57 , pp. 1008-1021
    • McDaniel, B.A.1    Grundy, F.J.2    Henkin, T.M.3
  • 27
    • 33646557632 scopus 로고    scopus 로고
    • Identification of a mutation in the Bacillus subtilis S-adenosylmethionine synthetase gene that results in derepression of S-box gene expression
    • McDaniel, B. A., F. J. Grundy, V. P. Kurlekar, J. Tomsic, and T. M. Henkin. 2006. Identification of a mutation in the Bacillus subtilis S-adenosylmethionine synthetase gene that results in derepression of S-box gene expression. J. Bacteriol. 188:3674-3681.
    • (2006) J. Bacteriol , vol.188 , pp. 3674-3681
    • McDaniel, B.A.1    Grundy, F.J.2    Kurlekar, V.P.3    Tomsic, J.4    Henkin, T.M.5
  • 28
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in molecular genetics
    • Miller, J.1
  • 29
    • 33745628336 scopus 로고    scopus 로고
    • Structure of the S-adenosylmethionine riboswitch regulatory mRNA element
    • Montange, R. K., and R. T. Batey. 2006. Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature 441:1172-1175.
    • (2006) Nature , vol.441 , pp. 1172-1175
    • Montange, R.K.1    Batey, R.T.2
  • 30
    • 0036202171 scopus 로고    scopus 로고
    • Prediction of gene function in methylthioadenosine recycling from regulatory signals
    • Murphy, B. A., F. J. Grundy, and T. M. Henkin. 2002. Prediction of gene function in methylthioadenosine recycling from regulatory signals. J. Bacteriol. 184:2314-2318.
    • (2002) J. Bacteriol , vol.184 , pp. 2314-2318
    • Murphy, B.A.1    Grundy, F.J.2    Henkin, T.M.3
  • 31
    • 33846898497 scopus 로고    scopus 로고
    • Interplay of 'induced fit' and preorganization in the ligand induced folding of the aptamer domain of the guanine binding riboswitch
    • Noeske, J., J. Buck, B. Fürtig, H. R. Nasiri, H. Schwalbe, and J. Wöhnert. 2007. Interplay of 'induced fit' and preorganization in the ligand induced folding of the aptamer domain of the guanine binding riboswitch. Nucleic Acids Res. 35:572-583.
    • (2007) Nucleic Acids Res , vol.35 , pp. 572-583
    • Noeske, J.1    Buck, J.2    Fürtig, B.3    Nasiri, H.R.4    Schwalbe, H.5    Wöhnert, J.6
  • 32
    • 0346687595 scopus 로고    scopus 로고
    • The riboswitch control of bacterial metabolism
    • Nudler, E., and A. S. Mironov. 2004. The riboswitch control of bacterial metabolism. Trends Biochem. Sci. 29:11-17.
    • (2004) Trends Biochem. Sci , vol.29 , pp. 11-17
    • Nudler, E.1    Mironov, A.S.2
  • 33
    • 0019488569 scopus 로고
    • Initiation of Bacillus subtilis sporulation by the stringent response to partial amino acid deprivation
    • Ochi, K., J. C. Kandala, and E. Freese. 1981. Initiation of Bacillus subtilis sporulation by the stringent response to partial amino acid deprivation. J. Biol. Chem. 256:6866-6875.
    • (1981) J. Biol. Chem , vol.256 , pp. 6866-6875
    • Ochi, K.1    Kandala, J.C.2    Freese, E.3
  • 34
    • 3042639887 scopus 로고    scopus 로고
    • Comparative genomics of the methionine metabolism in Gram-positive bacteria: A variety of regulatory systems
    • Rodionov, D. A., G. Vitreschak, A. A. Mironov, and M. S. Gelfand. 2004. Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems. Nucleic Acids Res. 32:3340-3353.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3340-3353
    • Rodionov, D.A.1    Vitreschak, G.2    Mironov, A.A.3    Gelfand, M.S.4
  • 35
    • 19044362589 scopus 로고    scopus 로고
    • The methionine salvage pathway in Bacillus subtilis
    • Sekowska, A., and A. Danchin. 2002. The methionine salvage pathway in Bacillus subtilis. BMC Microbiol. 2:8.
    • (2002) BMC Microbiol , vol.2 , pp. 8
    • Sekowska, A.1    Danchin, A.2
  • 36
    • 2942549198 scopus 로고    scopus 로고
    • Riboswitches exert genetic control through metabolite-induced conformational change
    • Soukup, J. K., and G. A. Soukup. 2004. Riboswitches exert genetic control through metabolite-induced conformational change. Curr. Opin. Struct. Biol. 14:344-349.
    • (2004) Curr. Opin. Struct. Biol , vol.14 , pp. 344-349
    • Soukup, J.K.1    Soukup, G.A.2
  • 37
    • 33947728975 scopus 로고    scopus 로고
    • Trans-acting glmS catalytic riboswitch: Locked and loaded
    • Tinsley, R. A., J. R. W. Furchak, and N. G. Walter. 2007. Trans-acting glmS catalytic riboswitch: locked and loaded. RNA 13:468-477.
    • (2007) RNA , vol.13 , pp. 468-477
    • Tinsley, R.A.1    Furchak, J.R.W.2    Walter, N.G.3
  • 38
    • 20444478991 scopus 로고    scopus 로고
    • Riboswitches as versatile control elements
    • Tucker, B. J., and R. R. Breaker. 2005. Riboswitches as versatile control elements. Curr. Opin. Struct. Biol. 15:342-348.
    • (2005) Curr. Opin. Struct. Biol , vol.15 , pp. 342-348
    • Tucker, B.J.1    Breaker, R.R.2
  • 39
    • 0347418195 scopus 로고    scopus 로고
    • Riboswitches: The oldest mechanism for the regulation of gene expression?
    • Vitreschak, A. G., D. A. Rodionov, A. A. Mironov, and M. S. Gelfand. 2004. Riboswitches: the oldest mechanism for the regulation of gene expression? Trends Genet. 20:44-50.
    • (2004) Trends Genet , vol.20 , pp. 44-50
    • Vitreschak, A.G.1    Rodionov, D.A.2    Mironov, A.A.3    Gelfand, M.S.4
  • 40
    • 0028227702 scopus 로고
    • The RNA chain elongation rate in Escherichia coli depends on the growth rate
    • Vogel, U., and K. F. Jensen. 1994. The RNA chain elongation rate in Escherichia coli depends on the growth rate. J. Bacteriol. 176:2807-2813.
    • (1994) J. Bacteriol , vol.176 , pp. 2807-2813
    • Vogel, U.1    Jensen, K.F.2
  • 41
    • 0024024568 scopus 로고
    • Genetic mapping and physiological consequences of metE mutations of Bacillus subtilis
    • Wabiko, H., K. Ochi, D. M. Nguyen, E. R. Allen, and E. Freese. 1988. Genetic mapping and physiological consequences of metE mutations of Bacillus subtilis. J. Bacteriol. 170:2705-2710.
    • (1988) J. Bacteriol , vol.170 , pp. 2705-2710
    • Wabiko, H.1    Ochi, K.2    Nguyen, D.M.3    Allen, E.R.4    Freese, E.5
  • 42
    • 38649112809 scopus 로고    scopus 로고
    • Reference deleted
    • Reference deleted.
  • 43
    • 27144527479 scopus 로고    scopus 로고
    • Regulation of bacterial gene expression by riboswitches
    • Winkler, W. C., and R. R. Breaker. 2005. Regulation of bacterial gene expression by riboswitches. Annu. Rev. Microbiol. 59:487-517.
    • (2005) Annu. Rev. Microbiol , vol.59 , pp. 487-517
    • Winkler, W.C.1    Breaker, R.R.2
  • 44
    • 0034897731 scopus 로고    scopus 로고
    • The GA motif: An RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs
    • Winkler, W. C., F. J. Grundy, B. A. Murphy, and T. M. Henkin. 2001. The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs. RNA 7:1165-1172.
    • (2001) RNA , vol.7 , pp. 1165-1172
    • Winkler, W.C.1    Grundy, F.J.2    Murphy, B.A.3    Henkin, T.M.4
  • 45
    • 0042320361 scopus 로고    scopus 로고
    • An mRNA structure that controls gene expression by binding S-adenosylmethionine
    • Winkler, W. C., A. Nahvi, N. Sudarsan, J. E. Barrick, and R. R. Breaker. 2003. An mRNA structure that controls gene expression by binding S-adenosylmethionine. Nat. Struct. Biol. 10:701-707.
    • (2003) Nat. Struct. Biol , vol.10 , pp. 701-707
    • Winkler, W.C.1    Nahvi, A.2    Sudarsan, N.3    Barrick, J.E.4    Breaker, R.R.5
  • 46
    • 9344235427 scopus 로고    scopus 로고
    • Cloning and characterization of the metE gene encoding S-adenosylmethionine synthetase from Bacillus subtilis
    • Yocum, R. R., J. B. Perkins, C. L. Howitt, and J. Pero. 1996. Cloning and characterization of the metE gene encoding S-adenosylmethionine synthetase from Bacillus subtilis. J. Bacteriol. 178:4604-4610.
    • (1996) J. Bacteriol , vol.178 , pp. 4604-4610
    • Yocum, R.R.1    Perkins, J.B.2    Howitt, C.L.3    Pero, J.4
  • 47
    • 0023272642 scopus 로고
    • Role of AbrB in Spo0A- and Spo0B-dependent utilization of a sporulation promoter in B. subtilis
    • Zuber, P., and R. Losick. 1987. Role of AbrB in Spo0A- and Spo0B-dependent utilization of a sporulation promoter in B. subtilis. J. Bacteriol. 169:2223-2230.
    • (1987) J. Bacteriol , vol.169 , pp. 2223-2230
    • Zuber, P.1    Losick, R.2
  • 48
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


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