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Volumn 273, Issue 5282, 1996, Pages 1678-1685

Crystal structure of a group I ribozyme domain: Principles of RNA packing

Author keywords

[No Author keywords available]

Indexed keywords

RIBOZYME;

EID: 0029820625     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.273.5282.1678     Document Type: Article
Times cited : (1194)

References (76)
  • 5
    • 0025963132 scopus 로고
    • _, Science 251, 401 (1991).
    • (1991) Science , vol.251 , pp. 401
  • 15
    • 0029904022 scopus 로고    scopus 로고
    • P. P. Zarrinkar and J. R. Williamson, Science 265, 918 (1994); W. Downs and T. R. Cech, RNA 2, 718 (1996).
    • (1996) RNA , vol.2 , pp. 718
    • Downs, W.1    Cech, T.R.2
  • 23
    • 0015929511 scopus 로고
    • S. H. Kim et al., Science 179, 285 (1973).
    • (1973) Science , vol.179 , pp. 285
    • Kim, S.H.1
  • 24
  • 26
    • 0019123185 scopus 로고
    • D. Moras et al., ibid. 288, 669 (1980).
    • (1980) Nature , vol.288 , pp. 669
    • Moras, D.1
  • 30
    • 0002176755 scopus 로고
    • R. F. Gesteland and J. F. Atkins, Eds. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Reviewed by J. R. Wyatt and I. Tinoco Jr., in The RNA World, R. F. Gesteland and J. F. Atkins, Eds. (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1993), p. 465; L. X. Shen, Z. Cai, I. Tinoco Jr., FASEB J. 9, 1023 (1995).
    • (1993) The RNA World , pp. 465
    • Wyatt, J.R.1    Tinoco Jr., I.2
  • 31
    • 0029080246 scopus 로고
    • Reviewed by J. R. Wyatt and I. Tinoco Jr., in The RNA World, R. F. Gesteland and J. F. Atkins, Eds. (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1993), p. 465; L. X. Shen, Z. Cai, I. Tinoco Jr., FASEB J. 9, 1023 (1995).
    • (1995) FASEB J. , vol.9 , pp. 1023
    • Shen, L.X.1    Cai, Z.2    Tinoco Jr., I.3
  • 35
    • 85035180431 scopus 로고    scopus 로고
    • note
    • Both molecules A and B contain residues 103 through 260. In the crystals, ≃50 percent of the RNA is nicked in lcop L6b between residues C237 and U238 [determined by direct RNA sequencing and primer extension analysis of RNA in crystals (unpublished data)]. For both molecules L6b has fairly continuous density in the experimental map for the backbone; the bases for nucleotides 236 through 239 have not been modeled. In each molecule, there are three to four residues-where the phosphate density is visible in the map but the base or ribose and base are not. In these cases, the full nucleotide has been included for refinement, but the occupancy for the missing component has been set to zero.
  • 44
    • 0029796982 scopus 로고    scopus 로고
    • J. H. Cate et al., Science 273, 1696 (1996).
    • (1996) Science , vol.273 , pp. 1696
    • Cate, J.H.1
  • 48
    • 85035177706 scopus 로고    scopus 로고
    • note
    • Free radicals produced by Fe(II)-EDTA in solution (presumably ·OH) cleave RNA without substantial specificity for base sequence or single- or doublestrandedness and therefore are useful for probing the solvent accessibility of elements within complex folded RNAs (3-5).
  • 49
    • 0029044469 scopus 로고
    • Intermolecular hydrogen bonds between 02′ atoms of duplex RNAs in a crystal have also been reported by H. Schindelin et al., J. Mol. Biol. 249, 595 (1995).
    • (1995) J. Mol. Biol. , vol.249 , pp. 595
    • Schindelin, H.1
  • 52
    • 0027256149 scopus 로고
    • D. Smith, A. B. Burgin, E. S. Haas, N. R. Pace, J. Biol. Chem. 267, 2429 (1992); D. Smith, and N. R. Pace, Biochemistry 32 5273 (1993).
    • (1993) Biochemistry , vol.32 , pp. 5273
    • Smith, D.1    Pace, N.R.2
  • 53
    • 0027183545 scopus 로고
    • A. M. Pyle, Science 261, 709 (1993).
    • (1993) Science , vol.261 , pp. 709
    • Pyle, A.M.1
  • 57
    • 85035173086 scopus 로고    scopus 로고
    • note
    • The two molecules (A and B) in the asymmetric unit of the crystal show different degrees of order at the 5′ end. In molecule B, clear density is seen in the solvent-flattened experimental map for all but the first G of the sequence; in molecule A, the density is weak for the first 4 nt of the sequence.
  • 65
    • 0027756744 scopus 로고
    • T. R. Cech. Gene 135, 33 (1993).
    • (1993) Gene , vol.135 , pp. 33
    • Cech, T.R.1
  • 66
    • 0029037713 scopus 로고
    • B. Cuenoud and J. W. Szostak, Nature 375, 611 (1995); R. R. Breaker and G. F. Joyce, Chem. Biol. 1, 223 (1994); ibid. 2, 655 (1995).
    • (1995) Nature , vol.375 , pp. 611
    • Cuenoud, B.1    Szostak, J.W.2
  • 67
    • 0028675028 scopus 로고
    • B. Cuenoud and J. W. Szostak, Nature 375, 611 (1995); R. R. Breaker and G. F. Joyce, Chem. Biol. 1, 223 (1994); ibid. 2, 655 (1995).
    • (1994) Chem. Biol. , vol.1 , pp. 223
    • Breaker, R.R.1    Joyce, G.F.2
  • 68
    • 0028983570 scopus 로고
    • B. Cuenoud and J. W. Szostak, Nature 375, 611 (1995); R. R. Breaker and G. F. Joyce, Chem. Biol. 1, 223 (1994); ibid. 2, 655 (1995).
    • (1995) Chem. Biol. , vol.2 , pp. 655
  • 69
    • 0002634621 scopus 로고
    • W. Wolf, P. R. Evans, A. G. W. Leslie, Eds. SERC Daresbury Laboratory, Warington, UK
    • Z. Otwinowski, in Isomorphous Replacement and Anomalous Scattering, W. Wolf, P. R. Evans, A. G. W. Leslie, Eds. (SERC Daresbury Laboratory, Warington, UK, 1991), pp. 80-86.
    • (1991) Isomorphous Replacement and Anomalous Scattering , pp. 80-86
    • Otwinowski, Z.1
  • 70
    • 0028103275 scopus 로고
    • Collaborative Computing Project Number 4, Acta Crystallogr. D 50, 760 (1994).
    • (1994) Acta Crystallogr. D , vol.50 , pp. 760
  • 75
    • 85035181027 scopus 로고    scopus 로고
    • note
    • The MidasPlus program was developed at the Computer Graphics Laboratory, University of California, San Francisco (supported by NIH RR-01081).
  • 76
    • 85035181984 scopus 로고    scopus 로고
    • note
    • We thank H. Taube of Stanford University for the osmium hexammine triflate; T. Steitz, S. Schultz, A. Brünger, A. Ferré-d'Amaré, C. Correll, D. Engelman, A. Friedman, T. Griffin, J. Jaeger, A. M. Pyle, V. Rath, L. Rice, L. Silvian, S. Strobel, J. Wang, and members of the Center for Structural Biology at Yale for many helpful discussions; V. Carperos, L. Doherty, A. Ferré-d'Amaré, C. Correll, and J. Jaeger for help with data collection; V. Rath and Pfizer Inc. of Groton, CT, for use of data collection equipment; C. Ogata and W. Hendrickson for useful discussions and data collection time at beamline X-4A at the National Synchrotron Light Source, Brookhaven National Laboratory, Upton, NY; the staff at Cornell High Energy Synchrotron Source (CHESS) beamline A-1; A. Thompson and the staff at beamline BL-19 at the European Synchrotron Radiation Facility (ESRF), Grenoble, France; and A. Ferré-d'Amaré, V. Rath, and S. Strobel for review of the manuscript. Supported by the Lucille P. Markey Charitable Trust Scholars Program, the Donaghue Medical Research Foundation, NIH grant GM22778-21, the Searle Scholars Program, and the Beckman Young Investigators Program (J.A.D.), NIH training grant 5T32GM08283-07 (J.H.C.), American Cancer Society postdoctoral fellowship (B.L.G.), NSF grant MCB-9221307 (C.E.K.), Howard Hughes Medical Institute (T.R.C.), and the Keck Foundation (C.E.K. and T.R.C.).


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