-
1
-
-
44949246374
-
Nought may endure but mutability: Spliceosome dynamics and the regulation of splicing
-
Smith DJ, Query CC, Konarska MM (2008) "Nought may endure but mutability": Spliceosome dynamics and the regulation of splicing. Mol Cell 30: 657-666.
-
(2008)
Mol Cell
, vol.30
, pp. 657-666
-
-
Smith, D.J.1
Query, C.C.2
Konarska, M.M.3
-
2
-
-
57549118722
-
RNA folding and ribosome assembly
-
Woodson SA (2008) RNA folding and ribosome assembly. Curr Opin Chem Biol 12: 667-673.
-
(2008)
Curr Opin Chem Biol
, vol.12
, pp. 667-673
-
-
Woodson, S.A.1
-
3
-
-
48249104039
-
Riboswitches: Emerging themes in RNA structure and function
-
Montange RK, Batey RT (2008) Riboswitches: emerging themes in RNA structure and function. Annu Rev Biophys Biomol Struct 37: 117-133.
-
(2008)
Annu Rev Biophys Biomol Struct
, vol.37
, pp. 117-133
-
-
Montange, R.K.1
Batey, R.T.2
-
4
-
-
42149126162
-
Evolution of bacterial trp operons and their regulation
-
Merino E, Jensen RA, Yanofsky C (2008) Evolution of bacterial trp operons and their regulation. Curr Opin Microbiol 11: 78-86.
-
(2008)
Curr Opin Microbiol
, vol.11
, pp. 78-86
-
-
Merino, E.1
Jensen, R.A.2
Yanofsky, C.3
-
5
-
-
67650713931
-
The structural and functional diversity of metabolite-binding riboswitches
-
Roth A, Breaker RR (2009) The structural and functional diversity of metabolite-binding riboswitches. Annu Rev Biochem 78: 305-334.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 305-334
-
-
Roth, A.1
Breaker, R.R.2
-
6
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ (2009) Origins and mechanisms of miRNAs and siRNAs. Cell 136: 642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
7
-
-
0029258928
-
Keeping RNA happy
-
Uhlenbeck OC (1995) Keeping RNA happy. RNA 1: 4-6.
-
(1995)
RNA
, vol.1
, pp. 4-6
-
-
Uhlenbeck, O.C.1
-
9
-
-
0034043484
-
Recent insights on RNA folding mechanisms from catalytic RNA
-
Woodson SA (2000) Recent insights on RNA folding mechanisms from catalytic RNA. Cellular and Molecular Life Science 57: 796-608.
-
(2000)
Cellular and Molecular Life Science
, vol.57
, pp. 796-608
-
-
Woodson, S.A.1
-
10
-
-
0029163563
-
RNA chaperones and the RNA folding problem
-
Herschlag D (1995) RNA chaperones and the RNA folding problem. J Biol Chem 270: 20871-20874.
-
(1995)
J Biol Chem
, vol.270
, pp. 20871-20874
-
-
Herschlag, D.1
-
12
-
-
39049131090
-
RNA chaperones, RNA annealers and RNA helicases
-
Rajkowitsch L, Chen D, Starnpfl S, Sernrad K, Waldsich C, et al. (2007) RNA chaperones, RNA annealers and RNA helicases. RNA Biology 4: 118-130.
-
(2007)
RNA Biology
, vol.4
, pp. 118-130
-
-
Rajkowitsch, L.1
Chen, D.2
Starnpfl, S.3
Sernrad, K.4
Waldsich, C.5
-
13
-
-
46549085105
-
Unwinding RNA's secrets: Advances in the biology, physics, and modeling of complex RNAs
-
Chu VB, Herschlag D (2008) Unwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs. Curr Opin Struct Biol 18: 305-314.
-
(2008)
Curr Opin Struct Biol
, vol.18
, pp. 305-314
-
-
Chu, V.B.1
Herschlag, D.2
-
14
-
-
38449108345
-
RNA misfolding and the action of chaperones
-
Russell R (2008) RNA misfolding and the action of chaperones. Frontiers in Bioscience 13: 1-20.
-
(2008)
Frontiers in Bioscience
, vol.13
, pp. 1-20
-
-
Russell, R.1
-
15
-
-
0028216716
-
An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis
-
Herschlag D, Khosla M, Tsuchihashi Z, Karpel RL (1994) An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis. EMBO J 13: 2913-2924.
-
(1994)
EMBO J
, vol.13
, pp. 2913-2924
-
-
Herschlag, D.1
Khosla, M.2
Tsuchihashi, Z.3
Karpel, R.L.4
-
16
-
-
0028276865
-
Escherichia coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones
-
Coetzee T, Herschlag D, Belfort M (1994) Escherichia coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones. Genes Dev 8: 1575-1588.
-
(1994)
Genes Dev
, vol.8
, pp. 1575-1588
-
-
Coetzee, T.1
Herschlag, D.2
Belfort, M.3
-
17
-
-
9344260242
-
RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli
-
Semrad K, Green R, Schroeder R (2004) RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli. RNA 10: 1855-1860.
-
(2004)
RNA
, vol.10
, pp. 1855-1860
-
-
Semrad, K.1
Green, R.2
Schroeder, R.3
-
20
-
-
34347385000
-
RNA helicases - one fold for many functions
-
Jankowsky E, Fairman ME (2007) RNA helicases - one fold for many functions. Curr Opin Struct Biol 17: 316-324.
-
(2007)
Curr Opin Struct Biol
, vol.17
, pp. 316-324
-
-
Jankowsky, E.1
Fairman, M.E.2
-
21
-
-
33845738802
-
Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and - independent mechanisms, and general RNA chaperone activity
-
Halls C, Mohr S, Del Campo M, Yang Q, Jankowsky E, et al. (2007) Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and - independent mechanisms, and general RNA chaperone activity. J Mol Biol 365: 835-855.
-
(2007)
J Mol Biol
, vol.365
, pp. 835-855
-
-
Halls, C.1
Mohr, S.2
Del Campo, M.3
Yang, Q.4
Jankowsky, E.5
-
22
-
-
67349117103
-
Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones
-
Del Campo M, Mohr S, Jiang Y, Jia HJ, Jankowsky E, et al. (2009) Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones. J Mol Biol 389: 674-693.
-
(2009)
J Mol Biol
, vol.389
, pp. 674-693
-
-
Del Campo, M.1
Mohr, S.2
Jiang, Y.3
Jia, H.J.4
Jankowsky, E.5
-
23
-
-
0015914592
-
Free energy of imperfect nucleic acid helices 2. Small hairpin loops
-
Gralla J, Crothers DM (1973) Free energy of imperfect nucleic acid helices 2. Small hairpin loops. J Mol Biol 73: 497-502.
-
(1973)
J Mol Biol
, vol.73
, pp. 497-502
-
-
Gralla, J.1
Crothers, D.M.2
-
24
-
-
0016257808
-
Thermodynamic and kinetic parameters of an oligonucleotide hairpin helix
-
Pörschke D (1974) Thermodynamic and kinetic parameters of an oligonucleotide hairpin helix. Biophys Chem 1: 381-386.
-
(1974)
Biophys Chem
, vol.1
, pp. 381-386
-
-
Pörschke, D.1
-
25
-
-
34548507690
-
In vivo dynamics of RNA polymerase II transcription
-
Darzacq X, Shav-Tal Y, de Turris V, Brody Y, Shenoy SM, et al. (2007) In vivo dynamics of RNA polymerase II transcription. Nat Struct Mol Biol 14: 796-806.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 796-806
-
-
Darzacq, X.1
Shav-Tal, Y.2
de Turris, V.3
Brody, Y.4
Shenoy, S.M.5
-
26
-
-
0033605081
-
Pathway modulation, circular permutation and rapid RNA folding under kinetic control
-
Pan T, Fang X, Sosnick T (1999) Pathway modulation, circular permutation and rapid RNA folding under kinetic control. J Mol Biol 286: 721-731.
-
(1999)
J Mol Biol
, vol.286
, pp. 721-731
-
-
Pan, T.1
Fang, X.2
Sosnick, T.3
-
27
-
-
0038475911
-
Effect of transcription on folding of the Tetrahymena ribozyme
-
Heilman-Miller SL, Woodson SA (2003) Effect of transcription on folding of the Tetrahymena ribozyme. RNA 9: 722-733.
-
(2003)
RNA
, vol.9
, pp. 722-733
-
-
Heilman-Miller, S.L.1
Woodson, S.A.2
-
28
-
-
33750972017
-
RNA polymerase pausing regulates translation initiation by providing additional time for TRAP-RNA interaction
-
Yakhnin AV, Yakhnin H, Babitzke P (2006) RNA polymerase pausing regulates translation initiation by providing additional time for TRAP-RNA interaction. Mol Cell 24: 547-557.
-
(2006)
Mol Cell
, vol.24
, pp. 547-557
-
-
Yakhnin, A.V.1
Yakhnin, H.2
Babitzke, P.3
-
30
-
-
36749064979
-
Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures
-
Wong TN, Sosnick TR, Pan T (2007) Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures. Proc Natl Acad Sci 104: 17995-18000.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 17995-18000
-
-
Wong, T.N.1
Sosnick, T.R.2
Pan, T.3
-
31
-
-
0030865308
-
Kinetics of hairpin ribozyme cleavage in yeast
-
Donahue CP, Fedor MJ (1997) Kinetics of hairpin ribozyme cleavage in yeast. RNA 3: 961-973.
-
(1997)
RNA
, vol.3
, pp. 961-973
-
-
Donahue, C.P.1
Fedor, M.J.2
-
32
-
-
21244459458
-
Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast
-
Mahen EM, Harger JW, Calderon EM, Fedor MJ (2005) Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast. Mol Cell 19: 27-37.
-
(2005)
Mol Cell
, vol.19
, pp. 27-37
-
-
Mahen, E.M.1
Harger, J.W.2
Calderon, E.M.3
Fedor, M.J.4
-
33
-
-
77649168329
-
Determination of intracellular RNA folding rates using self-cleaving RNAs
-
Simon JNAaMI, ed
-
Watson P, Fedor M (2009) Determination of intracellular RNA folding rates using self-cleaving RNAs. In: Simon JNAaMI, ed. Biophysical, chemical, and functional probes of RNA structure, interactions and folding: Part A Elsevier. pp 259-286.
-
(2009)
Biophysical, chemical, and functional probes of RNA structure, interactions and folding: Part A Elsevier
, pp. 259-286
-
-
Watson, P.1
Fedor, M.2
-
34
-
-
0028837570
-
Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes
-
Hegg LA, Fedor MJ (1995) Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes. Biochemistry 34: 15813-15828.
-
(1995)
Biochemistry
, vol.34
, pp. 15813-15828
-
-
Hegg, L.A.1
Fedor, M.J.2
-
35
-
-
0032552882
-
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
-
Xia T, SantaLucia JJ, Burkard ME, Kierzek R, Schroeder SJ, et al. (1998) Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs. Biochemistry 37: 14719-14735.
-
(1998)
Biochemistry
, vol.37
, pp. 14719-14735
-
-
Xia, T.1
SantaLucia, J.J.2
Burkard, M.E.3
Kierzek, R.4
Schroeder, S.J.5
-
36
-
-
0034695408
-
The kinetic mechanism of the hairpin ribozyme in vivo: Influence of RNA helix stability on intracellular cleavage kinetics
-
Donahue CP, Yadava RS, Nesbitt SM, Fedor MJ (2000) The kinetic mechanism of the hairpin ribozyme in vivo: influence of RNA helix stability on intracellular cleavage kinetics. J Mol Biol 295: 693-707.
-
(2000)
J Mol Biol
, vol.295
, pp. 693-707
-
-
Donahue, C.P.1
Yadava, R.S.2
Nesbitt, S.M.3
Fedor, M.J.4
-
37
-
-
2442626706
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
-
Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, et al. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci 101: 7287-7292.
-
(2004)
Proc Natl Acad Sci
, vol.101
, pp. 7287-7292
-
-
Mathews, D.H.1
Disney, M.D.2
Childs, J.L.3
Schroeder, S.J.4
Zuker, M.5
-
38
-
-
0035875909
-
Hairpin ribozymes with four-way helical junctions mediate intracellular RNA ligation
-
Yadava RS, Choi AJ, Lebruska LL, Fedor MJ (2001) Hairpin ribozymes with four-way helical junctions mediate intracellular RNA ligation. J Mol Biol 309: 893-902.
-
(2001)
J Mol Biol
, vol.309
, pp. 893-902
-
-
Yadava, R.S.1
Choi, A.J.2
Lebruska, L.L.3
Fedor, M.J.4
-
39
-
-
40249094662
-
Loop dependence of the stability and dynamics of nucleic acid hairpins
-
Kuznetsov SV, Ren CC, Woodson SA, Ansari A (2008) Loop dependence of the stability and dynamics of nucleic acid hairpins. Nucleic Acids Res 36: 1098-1112.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1098-1112
-
-
Kuznetsov, S.V.1
Ren, C.C.2
Woodson, S.A.3
Ansari, A.4
-
40
-
-
0029129682
-
Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: Thermodynamic and spectroscopic applications
-
Molinaro M, Tinoco I Jr (1995) Use of ultra stable UNCG tetraloop hairpins to fold RNA structures: thermodynamic and spectroscopic applications. Nucleic Acids Res 23: 3056-3063.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 3056-3063
-
-
Molinaro, M.1
Tinoco Jr, I.2
-
41
-
-
0035253217
-
Macromolecular crowding: An important but neglected aspect of the intracellular environment
-
Ellis RJ (2001) Macromolecular crowding: an important but neglected aspect of the intracellular environment. Curr Opin Struct Biol 11: 114-119.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 114-119
-
-
Ellis, R.J.1
-
42
-
-
0037448912
-
Trimethylamine N-oxide stabilizes RNA tertiary structure and attenuates the denaturating effects of urea
-
Gluick TC, Yadav S (2003) Trimethylamine N-oxide stabilizes RNA tertiary structure and attenuates the denaturating effects of urea. J Am Chem Soc 125: 4418-4419.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 4418-4419
-
-
Gluick, T.C.1
Yadav, S.2
-
43
-
-
34250167241
-
Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions
-
Lambert D, Draper DE (2007) Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions. J Mol Biol 370: 993-1005.
-
(2007)
J Mol Biol
, vol.370
, pp. 993-1005
-
-
Lambert, D.1
Draper, D.E.2
-
44
-
-
41049090929
-
Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
-
Zhou HX, Rivas G, Minton AP (2008) Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences. Annu Rev Biophys 37: 375-397.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 375-397
-
-
Zhou, H.X.1
Rivas, G.2
Minton, A.P.3
-
45
-
-
45849086552
-
Molecular crowding effects on structure and stability of DNA
-
Miyoshi D, Sugimoto N (2008) Molecular crowding effects on structure and stability of DNA. Biochimie 90: 1040-1051.
-
(2008)
Biochimie
, vol.90
, pp. 1040-1051
-
-
Miyoshi, D.1
Sugimoto, N.2
-
46
-
-
0033525467
-
The internal equilibrium of the hairpin ribozyme: Temperature, ion and pH effects
-
Nesbitt SM, Erlacher HA, Fedor MJ (1999) The internal equilibrium of the hairpin ribozyme: temperature, ion and pH effects. J Mol Biol 286: 1009-1024.
-
(1999)
J Mol Biol
, vol.286
, pp. 1009-1024
-
-
Nesbitt, S.M.1
Erlacher, H.A.2
Fedor, M.J.3
-
47
-
-
0033600553
-
Tertiary structure stabilization promotes hairpin ribozyme ligation
-
Fedor MJ (1999) Tertiary structure stabilization promotes hairpin ribozyme ligation. Biochemistry 38: 11040-11050.
-
(1999)
Biochemistry
, vol.38
, pp. 11040-11050
-
-
Fedor, M.J.1
-
48
-
-
1942533452
-
Kinetic analysis of ribozyme-substrate complex formation in yeast
-
Yadava RS, Mahen EM, Fedor MJ (2004) Kinetic analysis of ribozyme-substrate complex formation in yeast. RNA 10: 863-879.
-
(2004)
RNA
, vol.10
, pp. 863-879
-
-
Yadava, R.S.1
Mahen, E.M.2
Fedor, M.J.3
-
50
-
-
7744221005
-
The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability
-
Nakano S, Karimata H, Ohmichi T, Kawakami J, Sugimoto N (2004) The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability. J Am Chem Soc 126: 14330-14331.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 14330-14331
-
-
Nakano, S.1
Karimata, H.2
Ohmichi, T.3
Kawakami, J.4
Sugimoto, N.5
-
51
-
-
44949181944
-
Effects of trimethylamine N-oxide (TMAO) and crowding agents on the stability of RNA hairpins
-
Pincus DL, Hyeon C, Thirumalai D (2008) Effects of trimethylamine N-oxide (TMAO) and crowding agents on the stability of RNA hairpins. J Am Chem Soc 130: 7364-7372.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 7364-7372
-
-
Pincus, D.L.1
Hyeon, C.2
Thirumalai, D.3
-
52
-
-
67649980004
-
Stabilization of three-way junctions of DNA under molecular crowding conditions
-
Muhuri S, Mimura K, Miyoshi D, Sugimoto N (2009) Stabilization of three-way junctions of DNA under molecular crowding conditions. J Am Chem Soc 131: 9268-9280.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 9268-9280
-
-
Muhuri, S.1
Mimura, K.2
Miyoshi, D.3
Sugimoto, N.4
-
53
-
-
4644266762
-
Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice
-
Koduvayur SP, Woodson SA (2004) Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice. RNA 10: 1526-1532.
-
(2004)
RNA
, vol.10
, pp. 1526-1532
-
-
Koduvayur, S.P.1
Woodson, S.A.2
-
54
-
-
21244469725
-
Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast
-
Lacadie SA, Rosbash M (2005) Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast. Mol Cell 19: 65-75.
-
(2005)
Mol Cell
, vol.19
, pp. 65-75
-
-
Lacadie, S.A.1
Rosbash, M.2
-
55
-
-
19344378943
-
Rules of engagement: Co-transcriptional recruitment of premRNA processing factors
-
Bentley DL (2005) Rules of engagement: co-transcriptional recruitment of premRNA processing factors. Curr Opin Cell Biol 17: 251-256.
-
(2005)
Curr Opin Cell Biol
, vol.17
, pp. 251-256
-
-
Bentley, D.L.1
-
56
-
-
33646556092
-
Pause sites promote transcriptional termination of mammalian RNA polymerase II
-
Gromak N, West S, Proudfoot NJ (2006) Pause sites promote transcriptional termination of mammalian RNA polymerase II. Mol Cell Biol 26: 3986-3996.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 3986-3996
-
-
Gromak, N.1
West, S.2
Proudfoot, N.J.3
-
57
-
-
34247203761
-
Transcription elongation by RNA polymerase I is linked to efficient rRNA processing and ribosome assembly
-
Schneider DA, Michel A, Sikes ML, Vu L, Dodd JA, et al. (2007) Transcription elongation by RNA polymerase I is linked to efficient rRNA processing and ribosome assembly. Mol Cell 26: 217-229.
-
(2007)
Mol Cell
, vol.26
, pp. 217-229
-
-
Schneider, D.A.1
Michel, A.2
Sikes, M.L.3
Vu, L.4
Dodd, J.A.5
-
58
-
-
60149110358
-
Pre-mRNA processing reaches back to transcription and ahead to translation
-
Moore MJ, Proudfoot NJ (2009) Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 136: 688-700.
-
(2009)
Cell
, vol.136
, pp. 688-700
-
-
Moore, M.J.1
Proudfoot, N.J.2
-
59
-
-
0036761093
-
Self-induced structural switches in RNA
-
Nagel JH, Pleij CW (2002) Self-induced structural switches in RNA. Biochimie 84: 913-923.
-
(2002)
Biochimie
, vol.84
, pp. 913-923
-
-
Nagel, J.H.1
Pleij, C.W.2
-
60
-
-
33744800528
-
Structures of regulatory elements in mRNAs
-
Batey RT (2006) Structures of regulatory elements in mRNAs. Curr Opin Struct Biol 16: 299-306.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 299-306
-
-
Batey, R.T.1
-
61
-
-
33746361251
-
The role of iron regulatory proteins in mammalian iron homeostasis and disease
-
Rouault TA (2006) The role of iron regulatory proteins in mammalian iron homeostasis and disease. Nat Chem Biol 2: 406-414.
-
(2006)
Nat Chem Biol
, vol.2
, pp. 406-414
-
-
Rouault, T.A.1
-
62
-
-
33846925650
-
Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes
-
Singh NN, Singh RN, Androphy EJ (2007) Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes. Nucleic Acids Res 35: 371-389.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 371-389
-
-
Singh, N.N.1
Singh, R.N.2
Androphy, E.J.3
-
63
-
-
44849117247
-
Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment
-
Khaladkar M, Liu JH, Wen DR, Wang JTL, Tian B (2008) Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment. BMC Genomics 9: 12.
-
(2008)
BMC Genomics
, vol.9
, pp. 12
-
-
Khaladkar, M.1
Liu, J.H.2
Wen, D.R.3
Wang, J.T.L.4
Tian, B.5
-
64
-
-
38349127601
-
Combinatorial control of exon recognition
-
Hertel KJ (2008) Combinatorial control of exon recognition. J Biol Chem 283: 1211-1215.
-
(2008)
J Biol Chem
, vol.283
, pp. 1211-1215
-
-
Hertel, K.J.1
-
65
-
-
67249165478
-
The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing
-
Warf MB, Diegel JV, von Hippel PH, Berglund JA (2009) The protein factors MBNL1 and U2AF65 bind alternative RNA structures to regulate splicing. Proc Natl Acad Sci U S A 106: 9203-9208.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 9203-9208
-
-
Warf, M.B.1
Diegel, J.V.2
von Hippel, P.H.3
Berglund, J.A.4
-
67
-
-
33747345020
-
Folding of the adenine riboswitch
-
Lemay JF, Penedo JC, Tremblay R, Lilley DMJ, Lafontaine DA (2006) Folding of the adenine riboswitch. Chem Biol 13: 857-868.
-
(2006)
Chem Biol
, vol.13
, pp. 857-868
-
-
Lemay, J.F.1
Penedo, J.C.2
Tremblay, R.3
Lilley, D.M.J.4
Lafontaine, D.A.5
-
68
-
-
38849204944
-
Direct observation of hierarchical folding in single riboswitch aptamers
-
Greenleaf WJ, Frieda KL, Foster DAN, Woodside MT, Block SM (2008) Direct observation of hierarchical folding in single riboswitch aptamers. Science 319: 630-633.
-
(2008)
Science
, vol.319
, pp. 630-633
-
-
Greenleaf, W.J.1
Frieda, K.L.2
Foster, D.A.N.3
Woodside, M.T.4
Block, S.M.5
-
69
-
-
0029258675
-
Translational control of maturation-protein synthesis in phage MS2: A role for the kinetics of RNA folding?
-
Groeneveld H, Thimon K, van Duin J (1995) Translational control of maturation-protein synthesis in phage MS2: a role for the kinetics of RNA folding? RNA 1: 79-88.
-
(1995)
RNA
, vol.1
, pp. 79-88
-
-
Groeneveld, H.1
Thimon, K.2
van Duin, J.3
-
70
-
-
0036434479
-
A mechanistic framework for cotranscriptional folding of the HDV genomic ribozyme in the presence of downstream sequence
-
Diegelman-Parente A, Bevilacqua PC (2002) A mechanistic framework for cotranscriptional folding of the HDV genomic ribozyme in the presence of downstream sequence. J Mol Biol 324: 1-16.
-
(2002)
J Mol Biol
, vol.324
, pp. 1-16
-
-
Diegelman-Parente, A.1
Bevilacqua, P.C.2
-
71
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
Sikorski RS, Hieter P (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
74
-
-
0028339955
-
Kinetic characterization of intramolecular and intermolecular hammerhead RNAs with stem II deletions
-
Long DM, Uhlenbeck OC (1994) Kinetic characterization of intramolecular and intermolecular hammerhead RNAs with stem II deletions. Proc Natl Acad Sci 91: 6977-6981.
-
(1994)
Proc Natl Acad Sci
, vol.91
, pp. 6977-6981
-
-
Long, D.M.1
Uhlenbeck, O.C.2
-
75
-
-
0028224704
-
Effects of solution conditions on the steady-state kinetics of initiation of transcription by T7 RNA polymerase
-
Maslak M, Martin CT (1994) Effects of solution conditions on the steady-state kinetics of initiation of transcription by T7 RNA polymerase. Biochemistry 33: 6918-6924.
-
(1994)
Biochemistry
, vol.33
, pp. 6918-6924
-
-
Maslak, M.1
Martin, C.T.2
-
77
-
-
0033654522
-
Probing RNA structure and RNA-ligand complexes with chemical probes
-
Brunel C, Romby P (2000) Probing RNA structure and RNA-ligand complexes with chemical probes. Methods Enzymol 318: 3-21.
-
(2000)
Methods Enzymol
, vol.318
, pp. 3-21
-
-
Brunel, C.1
Romby, P.2
|