-
1
-
-
24644502657
-
From birth to death: the complex lives of eukaryotic mRNAs
-
Moore M.J. From birth to death: the complex lives of eukaryotic mRNAs. Science 309 (2005) 1514-1518
-
(2005)
Science
, vol.309
, pp. 1514-1518
-
-
Moore, M.J.1
-
2
-
-
13444287967
-
Assembly and function of RNA silencing complexes
-
Sontheimer E.J. Assembly and function of RNA silencing complexes. Nature Rev. Mol. Cell Biol. 6 (2005) 127-138
-
(2005)
Nature Rev. Mol. Cell Biol.
, vol.6
, pp. 127-138
-
-
Sontheimer, E.J.1
-
3
-
-
4344583992
-
B2 RNA binds directly to RNA polymerase II to repress transcript synthesis
-
Espinoza C.A., Allen T.A., Hieb A.R., Kugel J.F., and Goodrich J.A. B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nature Struct. Mol. Biol. 11 (2004) 822-829
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 822-829
-
-
Espinoza, C.A.1
Allen, T.A.2
Hieb, A.R.3
Kugel, J.F.4
Goodrich, J.A.5
-
4
-
-
0034625237
-
6 S RNA regulates E. coli RNA polymerase activity
-
Wassarman K.M., and Storz G. 6 S RNA regulates E. coli RNA polymerase activity. Cell 101 (2000) 613-623
-
(2000)
Cell
, vol.101
, pp. 613-623
-
-
Wassarman, K.M.1
Storz, G.2
-
5
-
-
0242361319
-
Inhibition of P-TEFb (CDK9/cyclin T) kinase and RNA polymerase II transcription by the coordinated actions of HEXIM1 and 7SK snRNA
-
Yik J.H., Chen R., Nishimura R., Jennings J.L., Link A.J., and Zhou Q. Inhibition of P-TEFb (CDK9/cyclin T) kinase and RNA polymerase II transcription by the coordinated actions of HEXIM1 and 7SK snRNA. Mol. Cell 12 (2003) 971-982
-
(2003)
Mol. Cell
, vol.12
, pp. 971-982
-
-
Yik, J.H.1
Chen, R.2
Nishimura, R.3
Jennings, J.L.4
Link, A.J.5
Zhou, Q.6
-
6
-
-
0035320036
-
mRNA localization: message on the move
-
Jansen R.P. mRNA localization: message on the move. Nature Rev. Mol. Cell Biol. 2 (2001) 247-256
-
(2001)
Nature Rev. Mol. Cell Biol.
, vol.2
, pp. 247-256
-
-
Jansen, R.P.1
-
8
-
-
0033059981
-
Formation of mRNA 3′ ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
Zhao J., Hyman L., and Moore C. Formation of mRNA 3′ ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiol. Mol. Biol. Rev. 63 (1999) 405-445
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.3
-
9
-
-
0033575897
-
Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA
-
Antson A.A., Dodson E.J., Dodson G., Greaves R.B., Chen X., and Gollnick P. Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA. Nature 401 (1999) 235-242
-
(1999)
Nature
, vol.401
, pp. 235-242
-
-
Antson, A.A.1
Dodson, E.J.2
Dodson, G.3
Greaves, R.B.4
Chen, X.5
Gollnick, P.6
-
10
-
-
29144475324
-
Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis
-
Gollnick P., Babitzke P., Antson A., and Yanofsky C. Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis. Annu. Rev. Genet. 39 (2005) 47-68
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 47-68
-
-
Gollnick, P.1
Babitzke, P.2
Antson, A.3
Yanofsky, C.4
-
11
-
-
0028251157
-
Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli
-
Zengel J.M., and Lindahl L. Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli. Prog. Nucl. Acid Res. Mol. Biol. 47 (1994) 331-370
-
(1994)
Prog. Nucl. Acid Res. Mol. Biol.
, vol.47
, pp. 331-370
-
-
Zengel, J.M.1
Lindahl, L.2
-
12
-
-
1642602044
-
RNA finds a simpler way
-
Cech T.R. RNA finds a simpler way. Nature 428 (2004) 263-264
-
(2004)
Nature
, vol.428
, pp. 263-264
-
-
Cech, T.R.1
-
14
-
-
0346687595
-
The riboswitch control of bacterial metabolism
-
Nudler E., and Mironov A.S. The riboswitch control of bacterial metabolism. Trends Biochem. Sci. 29 (2004) 11-17
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 11-17
-
-
Nudler, E.1
Mironov, A.S.2
-
16
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
Winkler W., Nahvi A., and Breaker R.R. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419 (2002) 952-956
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
17
-
-
32044442926
-
Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria
-
Corbino K.A., Barrick J.E., Lim J., Welz R., Tucker B.J., Puskarz I., et al. Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria. Genome Biol. 6 (2005) R70
-
(2005)
Genome Biol.
, vol.6
-
-
Corbino, K.A.1
Barrick, J.E.2
Lim, J.3
Welz, R.4
Tucker, B.J.5
Puskarz, I.6
-
18
-
-
2342511433
-
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
-
Barrick J.E., Corbino K.A., Winkler W.C., Nahvi A., Mandal M., Collins J., et al. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc. Natl Acad. Sci. USA 101 (2004) 6421-6426
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 6421-6426
-
-
Barrick, J.E.1
Corbino, K.A.2
Winkler, W.C.3
Nahvi, A.4
Mandal, M.5
Collins, J.6
-
19
-
-
0023655214
-
Cloning and characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis
-
Ebbole D.J., and Zalkin H. Cloning and characterization of a 12-gene cluster from Bacillus subtilis encoding nine enzymes for de novo purine nucleotide synthesis. J. Biol. Chem. 262 (1987) 8274-8287
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 8274-8287
-
-
Ebbole, D.J.1
Zalkin, H.2
-
20
-
-
0038210214
-
Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
-
Mandal M., Boese B., Barrick J.E., Winkler W.C., and Breaker R.R. Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell 113 (2003) 577-586
-
(2003)
Cell
, vol.113
, pp. 577-586
-
-
Mandal, M.1
Boese, B.2
Barrick, J.E.3
Winkler, W.C.4
Breaker, R.R.5
-
21
-
-
0037252684
-
Rfam: an RNA family database
-
Griffiths-Jones S., Bateman A., Marshall M., Khanna A., and Eddy S.R. Rfam: an RNA family database. Nucl. Acids Res. 31 (2003) 439-441
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
22
-
-
13444252847
-
Rfam: annotating non-coding RNAs in complete genomes
-
Griffiths-Jones S., Moxon S., Marshall M., Khanna A., Eddy S.R., and Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucl. Acids Res. 33 (2005) D121-D124
-
(2005)
Nucl. Acids Res.
, vol.33
-
-
Griffiths-Jones, S.1
Moxon, S.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
Bateman, A.6
-
23
-
-
9244225713
-
Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine
-
Batey R.T., Gilbert S.D., and Montange R.K. Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature 432 (2004) 411-415
-
(2004)
Nature
, vol.432
, pp. 411-415
-
-
Batey, R.T.1
Gilbert, S.D.2
Montange, R.K.3
-
24
-
-
10644250950
-
Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs
-
Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., et al. Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs. Chem. Biol. 11 (2004) 1729-1741
-
(2004)
Chem. Biol.
, vol.11
, pp. 1729-1741
-
-
Serganov, A.1
Yuan, Y.R.2
Pikovskaya, O.3
Polonskaia, A.4
Malinina, L.5
Phan, A.T.6
-
25
-
-
13444271576
-
An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs
-
Noeske J., Richter C., Grundl M.A., Nasiri H.R., Schwalbe H., and Wohnert J. An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs. Proc. Natl Acad. Sci. USA 102 (2005) 1372-1377
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 1372-1377
-
-
Noeske, J.1
Richter, C.2
Grundl, M.A.3
Nasiri, H.R.4
Schwalbe, H.5
Wohnert, J.6
-
26
-
-
15944382675
-
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
-
Wickiser J.K., Winkler W.C., Breaker R.R., and Crothers D.M. The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol. Cell 18 (2005) 49-60
-
(2005)
Mol. Cell
, vol.18
, pp. 49-60
-
-
Wickiser, J.K.1
Winkler, W.C.2
Breaker, R.R.3
Crothers, D.M.4
-
27
-
-
26444620938
-
The kinetics of ligand binding by an adenine-sensing riboswitch
-
Wickiser J.K., Cheah M.T., Breaker R.R., and Crothers D.M. The kinetics of ligand binding by an adenine-sensing riboswitch. Biochemistry 44 (2005) 13404-13414
-
(2005)
Biochemistry
, vol.44
, pp. 13404-13414
-
-
Wickiser, J.K.1
Cheah, M.T.2
Breaker, R.R.3
Crothers, D.M.4
-
28
-
-
0037432340
-
Role of a heterogeneous free state in the formation of a specific RNA-theophylline complex
-
Jucker F.M., Phillips R.M., McCallum S.A., and Pardi A. Role of a heterogeneous free state in the formation of a specific RNA-theophylline complex. Biochemistry 42 (2003) 2560-2567
-
(2003)
Biochemistry
, vol.42
, pp. 2560-2567
-
-
Jucker, F.M.1
Phillips, R.M.2
McCallum, S.A.3
Pardi, A.4
-
29
-
-
0034604296
-
The 2.8 Å crystal structure of the malachite green aptamer
-
Baugh C., Grate D., and Wilson C. The 2.8 Å crystal structure of the malachite green aptamer. J. Mol. Biol. 301 (2000) 117-128
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 117-128
-
-
Baugh, C.1
Grate, D.2
Wilson, C.3
-
30
-
-
0029904020
-
Solution structure of an ATP-binding RNA aptamer reveals a novel fold
-
Dieckmann T., Suzuki E., Nakamura G.K., and Feigon J. Solution structure of an ATP-binding RNA aptamer reveals a novel fold. RNA 2 (1996) 628-640
-
(1996)
RNA
, vol.2
, pp. 628-640
-
-
Dieckmann, T.1
Suzuki, E.2
Nakamura, G.K.3
Feigon, J.4
-
31
-
-
0029864853
-
Molecular recognition in the FMN-RNA aptamer complex
-
Fan P., Suri A.K., Fiala R., Live D., and Patel D.J. Molecular recognition in the FMN-RNA aptamer complex. J. Mol. Biol. 258 (1996) 480-500
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 480-500
-
-
Fan, P.1
Suri, A.K.2
Fiala, R.3
Live, D.4
Patel, D.J.5
-
32
-
-
0029946537
-
Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex
-
Jiang F., Kumar R.A., Jones R.A., and Patel D.J. Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex. Nature 382 (1996) 183-186
-
(1996)
Nature
, vol.382
, pp. 183-186
-
-
Jiang, F.1
Kumar, R.A.2
Jones, R.A.3
Patel, D.J.4
-
33
-
-
0030752211
-
Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA
-
Zimmermann G.R., Jenison R.D., Wick C.L., Simorre J.P., and Pardi A. Interlocking structural motifs mediate molecular discrimination by a theophylline-binding RNA. Nature Struct. Biol. 4 (1997) 644-649
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 644-649
-
-
Zimmermann, G.R.1
Jenison, R.D.2
Wick, C.L.3
Simorre, J.P.4
Pardi, A.5
-
34
-
-
0034662146
-
A water channel in the core of the vitamin B(12) RNA aptamer
-
Sussman D., and Wilson C. A water channel in the core of the vitamin B(12) RNA aptamer. Struct. Fold. Des. 8 (2000) 719-727
-
(2000)
Struct. Fold. Des.
, vol.8
, pp. 719-727
-
-
Sussman, D.1
Wilson, C.2
-
35
-
-
0034681490
-
Crystal structure of the ribonucleoprotein core of the signal recognition particle
-
Batey R.T., Rambo R.P., Lucast L., Rha B., and Doudna J.A. Crystal structure of the ribonucleoprotein core of the signal recognition particle. Science 287 (2000) 1232-1239
-
(2000)
Science
, vol.287
, pp. 1232-1239
-
-
Batey, R.T.1
Rambo, R.P.2
Lucast, L.3
Rha, B.4
Doudna, J.A.5
-
36
-
-
0036786231
-
Structural and energetic analysis of metal ions essential to SRP signal recognition domain assembly
-
Batey R.T., and Doudna J.A. Structural and energetic analysis of metal ions essential to SRP signal recognition domain assembly. Biochemistry 41 (2002) 11703-11710
-
(2002)
Biochemistry
, vol.41
, pp. 11703-11710
-
-
Batey, R.T.1
Doudna, J.A.2
-
37
-
-
0842334528
-
Adenine riboswitches and gene activation by disruption of a transcription terminator
-
Mandal M., and Breaker R.R. Adenine riboswitches and gene activation by disruption of a transcription terminator. Nature Struct. Mol. Biol. 11 (2004) 29-35
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 29-35
-
-
Mandal, M.1
Breaker, R.R.2
-
38
-
-
13844256246
-
Molecular recognition via coupled folding and binding in a TPR domain
-
Cliff M.J., Williams M.A., Brooke-Smith J., Barford D., and Ladbury J.E. Molecular recognition via coupled folding and binding in a TPR domain. J. Mol. Biol. 346 (2005) 717-732
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 717-732
-
-
Cliff, M.J.1
Williams, M.A.2
Brooke-Smith, J.3
Barford, D.4
Ladbury, J.E.5
-
39
-
-
0035838382
-
Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture
-
Leulliot N., and Varani G. Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture. Biochemistry 40 (2001) 7947-7956
-
(2001)
Biochemistry
, vol.40
, pp. 7947-7956
-
-
Leulliot, N.1
Varani, G.2
-
40
-
-
0033784534
-
Induced fit in RNA-protein recognition
-
Williamson J.R. Induced fit in RNA-protein recognition. Nature Struct. Biol. 7 (2000) 834-837
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 834-837
-
-
Williamson, J.R.1
-
41
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar R.S., and Record Jr. M.T. Coupling of local folding to site-specific binding of proteins to DNA. Science 263 (1994) 777-784
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record Jr., M.T.2
-
43
-
-
0030868374
-
Allosteric properties of inosine monophosphate dehydrogenase revealed through the thermodynamics of binding of inosine 5′-monophosphate and mycophenolic acid. Temperature dependent heat capacity of binding as a signature of ligand-coupled conformational equilibria
-
Bruzzese F.J., and Connelly P.R. Allosteric properties of inosine monophosphate dehydrogenase revealed through the thermodynamics of binding of inosine 5′-monophosphate and mycophenolic acid. Temperature dependent heat capacity of binding as a signature of ligand-coupled conformational equilibria. Biochemistry 36 (1997) 10428-10438
-
(1997)
Biochemistry
, vol.36
, pp. 10428-10438
-
-
Bruzzese, F.J.1
Connelly, P.R.2
-
44
-
-
0026688412
-
Thermodynamics of oligosaccharide binding to a monoclonal antibody specific for a Salmonella O-antigen point to hydrophobic interactions in the binding site
-
Sigurskjold B.W., and Bundle D.R. Thermodynamics of oligosaccharide binding to a monoclonal antibody specific for a Salmonella O-antigen point to hydrophobic interactions in the binding site. J. Biol. Chem. 267 (1992) 8371-8376
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 8371-8376
-
-
Sigurskjold, B.W.1
Bundle, D.R.2
-
45
-
-
12844278693
-
The interaction of carbohydrate-binding modules with insoluble non-crystalline cellulose is enthalpically driven
-
Boraston A.B. The interaction of carbohydrate-binding modules with insoluble non-crystalline cellulose is enthalpically driven. Biochem. J. 385 (2005) 479-484
-
(2005)
Biochem. J.
, vol.385
, pp. 479-484
-
-
Boraston, A.B.1
-
48
-
-
27244434786
-
Residue specific ribose and nucleobase dynamics of the cUUCGg RNA tetraloop motif by MNMR (13)C relaxation
-
Duchardt E., and Schwalbe H. Residue specific ribose and nucleobase dynamics of the cUUCGg RNA tetraloop motif by MNMR (13)C relaxation. J. Biomol. NMR 32 (2005) 295-308
-
(2005)
J. Biomol. NMR
, vol.32
, pp. 295-308
-
-
Duchardt, E.1
Schwalbe, H.2
-
49
-
-
0142075327
-
Genetic control by metabolite-binding riboswitches
-
Winkler W.C., and Breaker R.R. Genetic control by metabolite-binding riboswitches. Chem. Biochem 4 (2003) 1024-1032
-
(2003)
Chem. Biochem
, vol.4
, pp. 1024-1032
-
-
Winkler, W.C.1
Breaker, R.R.2
-
50
-
-
2442638925
-
A general method for rapid and nondenaturing purification of RNAs
-
Kieft J.S., and Batey R.T. A general method for rapid and nondenaturing purification of RNAs. RNA 10 (2004) 988-995
-
(2004)
RNA
, vol.10
, pp. 988-995
-
-
Kieft, J.S.1
Batey, R.T.2
-
51
-
-
0033213239
-
The finer things in X-ray diffraction data collection
-
Pflugrath J.W. The finer things in X-ray diffraction data collection. Acta Crystallog. sect. D 55 (1999) 1718-1725
-
(1999)
Acta Crystallog. sect. D
, vol.55
, pp. 1718-1725
-
-
Pflugrath, J.W.1
-
52
-
-
3543012707
-
Crystallography & NMR system: a new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D 54 (1998) 905-921
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
53
-
-
84901961522
-
Slow-cooling protocols for crystallographic refinement by simulated annealing
-
Brunger A.T., Krukowski A., and Erickson J.W. Slow-cooling protocols for crystallographic refinement by simulated annealing. Acta Crystallog. sect. A 46 (1990) 585-593
-
(1990)
Acta Crystallog. sect. A
, vol.46
, pp. 585-593
-
-
Brunger, A.T.1
Krukowski, A.2
Erickson, J.W.3
-
54
-
-
0035442411
-
Direct measurement of protein binding energetics by isothermal titration calorimetry
-
Leavitt S., and Freire E. Direct measurement of protein binding energetics by isothermal titration calorimetry. Curr. Opin. Struct. Biol. 11 (2001) 560-566
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 560-566
-
-
Leavitt, S.1
Freire, E.2
|