-
1
-
-
33748450564
-
Binding of full-length HIV-1 gp120 to CD4 induces structural reorientation around the gp120 core
-
Ashish, Garg R, Anguita J, Krueger JK. 2006. Binding of full-length HIV-1 gp120 to CD4 induces structural reorientation around the gp120 core. Biophys. J. 91:L69 -L71.
-
(2006)
Biophys. J.
, vol.91
-
-
Ashish1
Garg, R.2
Anguita, J.3
Krueger, J.K.4
-
2
-
-
0027250665
-
Primary structure effects on peptide group hydrogen exchange
-
Bai Y, Milne JS, Mayne L, Englander SW. 1993. Primary structure effects on peptide group hydrogen exchange. Proteins 17:75-86.
-
(1993)
Proteins
, vol.17
, pp. 75-86
-
-
Bai, Y.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
3
-
-
0032949148
-
Comparison of the antibody repertoire generated in healthy volunteers following immunization with a monomeric recombinant gp120 construct derived from a CCR5/CXCR4-using human immunodeficiency virus type 1 isolate with sera from naturally infected individuals
-
Beddows S, Lister S, Cheingsong R, Bruck C, Weber J. 1999. Comparison of the antibody repertoire generated in healthy volunteers following immunization with a monomeric recombinant gp120 construct derived from a CCR5/CXCR4-using human immunodeficiency virus type 1 isolate with sera from naturally infected individuals. J. Virol. 73:1740-1745.
-
(1999)
J. Virol.
, vol.73
, pp. 1740-1745
-
-
Beddows, S.1
Lister, S.2
Cheingsong, R.3
Bruck, C.4
Weber, J.5
-
4
-
-
0034634910
-
Immunization with recombinant canarypox vectors expressing membrane-anchored glycoprotein 120 followed by glycoprotein 160 boosting fails to generate antibodies that neutralize R5 primary isolates of human immunodeficiency virus type 1
-
Bures R, et al. 2000. Immunization with recombinant canarypox vectors expressing membrane-anchored glycoprotein 120 followed by glycoprotein 160 boosting fails to generate antibodies that neutralize R5 primary isolates of human immunodeficiency virus type 1. AIDS Res. Hum. Retroviruses 16:2019-2035.
-
(2000)
AIDS Res. Hum. Retroviruses
, vol.16
, pp. 2019-2035
-
-
Bures, R.1
-
5
-
-
0034003173
-
The human immunodeficiency virus type 1 gp120 V2 domain mediates gp41-independent intersubunit contacts
-
Center RJ, Earl PL, Lebowitz J, Schuck P, Moss B. 2000. The human immunodeficiency virus type 1 gp120 V2 domain mediates gp41-independent intersubunit contacts. J. Virol. 74:4448-4455.
-
(2000)
J. Virol.
, vol.74
, pp. 4448-4455
-
-
Center, R.J.1
Earl, P.L.2
Lebowitz, J.3
Schuck, P.4
Moss, B.5
-
6
-
-
13844302894
-
Structure of an unliganded simian immunodeficiency virus gp120 core
-
Chen B, et al. 2005. Structure of an unliganded simian immunodeficiency virus gp120 core. Nature 433:834-841.
-
(2005)
Nature
, vol.433
, pp. 834-841
-
-
Chen, B.1
-
8
-
-
34249827906
-
Characterization of human immunodeficiency virus type 1 monomeric and trimeric gp120 glycoproteins stabilized in the CD4-bound state: antigenicity, biophysics, and immunogenicity
-
Dey B, et al. 2007. Characterization of human immunodeficiency virus type 1 monomeric and trimeric gp120 glycoproteins stabilized in the CD4-bound state: antigenicity, biophysics, and immunogenicity. J. Virol. 81: 5579-5593.
-
(2007)
J. Virol.
, vol.81
, pp. 5579-5593
-
-
Dey, B.1
-
9
-
-
67249085575
-
Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site
-
doi: 10.1371/journal.ppat.1000445
-
Dey B, et al. 2009. Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site. PLoS Pathog. 5:e1000445. doi:10.1371/journal.ppat.1000445.
-
(2009)
PLoS Pathog
, vol.5
-
-
Dey, B.1
-
10
-
-
77951939875
-
Structure of a clade CHIV-1 gp120 bound to CD4 and CD4-induced antibody reveals anti-CD4 polyreactivity
-
Diskin R, Marcovecchio PM, Bjorkman PJ. 2010. Structure of a clade CHIV-1 gp120 bound to CD4 and CD4-induced antibody reveals anti-CD4 polyreactivity. Nat. Struct. Mol. Biol. 17:608-613.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 608-613
-
-
Diskin, R.1
Marcovecchio, P.M.2
Bjorkman, P.J.3
-
11
-
-
43749107283
-
Comparative protein structure modeling using Modeller
-
Eswar N, et al. 2006. Comparative protein structure modeling using Modeller. Curr. Protoc. Bioinformatics 5:Unit 5.6.
-
(2006)
Curr. Protoc. Bioinformatics
, vol.5
, Issue.UNIT 5
, pp. 6
-
-
Eswar, N.1
-
12
-
-
84861374644
-
PGV04, an HIV-1 gp120 CD4 binding site antibody, is broad and potent in neutralization but does not induce conformational changes characteristic of CD4
-
Falkowska E, et al. 2012. PGV04, an HIV-1 gp120 CD4 binding site antibody, is broad and potent in neutralization but does not induce conformational changes characteristic of CD4. J. Virol. 86:4394-4403.
-
(2012)
J. Virol.
, vol.86
, pp. 4394-4403
-
-
Falkowska, E.1
-
13
-
-
77955093635
-
Conformational characterization of aberrant disulfide-linked HIV-1 gp120 dimers secreted from overexpressing cells
-
Finzi A, et al. 2010. Conformational characterization of aberrant disulfide-linked HIV-1 gp120 dimers secreted from overexpressing cells. J. Virol. Methods 168:155-161.
-
(2010)
J. Virol. Methods
, vol.168
, pp. 155-161
-
-
Finzi, A.1
-
14
-
-
77749329921
-
Topological layers in the HIV-1 gp120 inner domain regulate gp41 interaction and CD4-triggered conformational transitions
-
Finzi A, et al. 2010. Topological layers in the HIV-1 gp120 inner domain regulate gp41 interaction and CD4-triggered conformational transitions. Mol. Cell 37:656-667.
-
(2010)
Mol. Cell
, vol.37
, pp. 656-667
-
-
Finzi, A.1
-
15
-
-
75649147383
-
Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale
-
Fischer H, de Oliveira Neto M, Napolitano HB, Craievich AF, Polikarpov I. 2010. Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale. J. Appl. Crystallogr. 43:101-109.
-
(2010)
J. Appl. Crystallogr.
, vol.43
, pp. 101-109
-
-
Fischer, H.1
de Oliveira Neto, M.2
Napolitano, H.B.3
Craievich, A.F.4
Polikarpov, I.5
-
16
-
-
55349124614
-
Additive empirical force field for hexopyranose monosaccharides
-
Guvench O, et al. 2008. Additive empirical force field for hexopyranose monosaccharides. J. Comput. Chem. 29:2543-2564.
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 2543-2564
-
-
Guvench, O.1
-
17
-
-
73349137333
-
CHARMM additive all-atom force field for glycosidic linkages between hexopyranoses
-
Guvench O, Hatcher ER, Venable RM, Pastor RW, Mackerell AD. 2009. CHARMM additive all-atom force field for glycosidic linkages between hexopyranoses. J. Chem. Theory Comput. 5:2353-2370.
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 2353-2370
-
-
Guvench, O.1
Hatcher, E.R.2
Venable, R.M.3
Pastor, R.W.4
Mackerell, A.D.5
-
18
-
-
0026451818
-
An O-linked carbohydrate neutralization epitope of HIV-1 gp 120 is expressed by HIV-1 env gene recombinant vaccinia virus
-
Hansen JE, Clausen H, Hu SL, Nielsen JO, Olofsson S. 1992. An O-linked carbohydrate neutralization epitope of HIV-1 gp 120 is expressed by HIV-1 env gene recombinant vaccinia virus. Arch. Virol. 126: 11-20.
-
(1992)
Arch. Virol.
, vol.126
, pp. 11-20
-
-
Hansen, J.E.1
Clausen, H.2
Hu, S.L.3
Nielsen, J.O.4
Olofsson, S.5
-
19
-
-
79960974710
-
Trimeric HIV-1 glycoprotein gp140 immunogens and native HIV-1 envelope glycoproteins display the same closed and open quaternary molecular architectures
-
Harris A, et al. 2011. Trimeric HIV-1 glycoprotein gp140 immunogens and native HIV-1 envelope glycoproteins display the same closed and open quaternary molecular architectures. Proc. Natl. Acad. Sci. U. S. A. 108:11440-11445.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 11440-11445
-
-
Harris, A.1
-
20
-
-
77951882041
-
Toward an antibody-based HIV-1 vaccine
-
Hoxie JA. 2010. Toward an antibody-based HIV-1 vaccine. Annu. Rev. Med. 61:135-152.
-
(2010)
Annu. Rev. Med.
, vol.61
, pp. 135-152
-
-
Hoxie, J.A.1
-
21
-
-
38949170716
-
Prospects of HIV Env modification as an approach to HIV vaccine design
-
Hu SL, Stamatatos L. 2007. Prospects of HIV Env modification as an approach to HIV vaccine design. Curr. HIV Res. 5:507-513.
-
(2007)
Curr. HIV Res.
, vol.5
, pp. 507-513
-
-
Hu, S.L.1
Stamatatos, L.2
-
22
-
-
27744597054
-
Structure of a V3-containing HIV-1 gp120 core
-
Huang CC, et al. 2005. Structure of a V3-containing HIV-1 gp120 core. Science 310:1025-1028.
-
(2005)
Science
, vol.310
, pp. 1025-1028
-
-
Huang, C.C.1
-
23
-
-
12144290520
-
Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120
-
Huang CC, et al. 2004. Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120. Proc. Natl. Acad. Sci. U. S. A. 101:2706-2711.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 2706-2711
-
-
Huang, C.C.1
-
24
-
-
58049213922
-
Inducing cross-clade neutralizing antibodies against HIV-1 by immunofocusing
-
doi: 10.1371/ journal.pone.0003937
-
Humbert M, et al. 2008. Inducing cross-clade neutralizing antibodies against HIV-1 by immunofocusing. PLoS One 3:e3937. doi:10.1371/ journal.pone.0003937.
-
(2008)
PLoS One
, vol.3
-
-
Humbert, M.1
-
25
-
-
0041920924
-
Structure-based, targeted deglycosylation of HIV-1 gp120 and effects on neutralization sensitivity and antibody recognition
-
Koch M, et al. 2003. Structure-based, targeted deglycosylation of HIV-1 gp120 and effects on neutralization sensitivity and antibody recognition. Virology 313:387-400.
-
(2003)
Virology
, vol.313
, pp. 387-400
-
-
Koch, M.1
-
26
-
-
77956819789
-
Local conformational stability of HIV-1 gp120 in unliganded and CD4-bound states as defined by amide hydrogen/ deuterium exchange
-
Kong L, et al. 2010. Local conformational stability of HIV-1 gp120 in unliganded and CD4-bound states as defined by amide hydrogen/ deuterium exchange. J. Virol. 84:10311-10321.
-
(2010)
J. Virol.
, vol.84
, pp. 10311-10321
-
-
Kong, L.1
-
27
-
-
0035124442
-
Automated matching of high- and lowresolution structural models
-
Kozin MB, Svergun DI. 2001. Automated matching of high- and lowresolution structural models. J. Appl. Crystallogr. 34:33-41.
-
(2001)
J. Appl. Crystallogr.
, vol.34
, pp. 33-41
-
-
Kozin, M.B.1
Svergun, D.I.2
-
28
-
-
84859561617
-
Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops
-
Kwon YD, et al. 2012. Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops. Proc. Natl. Acad. Sci. U. S. A. 109:5663-5668.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 5663-5668
-
-
Kwon, Y.D.1
-
29
-
-
0037069682
-
HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites
-
Kwong PD, et al. 2002. HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites. Nature 420: 678-682.
-
(2002)
Nature
, vol.420
, pp. 678-682
-
-
Kwong, P.D.1
-
30
-
-
0032543307
-
Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
-
Kwong PD, et al. 1998. Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody. Nature 393:648-659.
-
(1998)
Nature
, vol.393
, pp. 648-659
-
-
Kwong, P.D.1
-
31
-
-
0025292252
-
Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells
-
Leonard CK, et al. 1990. Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells. J. Biol. Chem. 265:10373-10382.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 10373-10382
-
-
Leonard, C.K.1
-
32
-
-
0033949711
-
Ultracentrifugal analysis of molecular mass of glycoproteins of unknown or ill-defined carbohydrate composition
-
Lewis MS, Junghans RP. 2000. Ultracentrifugal analysis of molecular mass of glycoproteins of unknown or ill-defined carbohydrate composition. Methods Enzymol. 321:136-149.
-
(2000)
Methods Enzymol
, vol.321
, pp. 136-149
-
-
Lewis, M.S.1
Junghans, R.P.2
-
33
-
-
80052287270
-
Mechanism of neutralization by the broadly neutralizing HIV-1 monoclonal antibody VRC01
-
Li Y, et al. 2011. Mechanism of neutralization by the broadly neutralizing HIV-1 monoclonal antibody VRC01. J. Virol. 85:8954-8967.
-
(2011)
J. Virol.
, vol.85
, pp. 8954-8967
-
-
Li, Y.1
-
34
-
-
20444463552
-
Functional visualization of viral molecular motor by hydrogen-deuterium exchange reveals transient states
-
Lisal J, et al. 2005. Functional visualization of viral molecular motor by hydrogen-deuterium exchange reveals transient states. Nat. Struct. Mol. Biol. 12:460-466.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 460-466
-
-
Lisal, J.1
-
35
-
-
51349162563
-
Molecular architecture of native HIV-1 gp120 trimers
-
Liu J, Bartesaghi A, Borgnia MJ, Sapiro G, Subramaniam S. 2008. Molecular architecture of native HIV-1 gp120 trimers. Nature 455:109-113.
-
(2008)
Nature
, vol.455
, pp. 109-113
-
-
Liu, J.1
Bartesaghi, A.2
Borgnia, M.J.3
Sapiro, G.4
Subramaniam, S.5
-
36
-
-
84055178652
-
Intraprotomer masking of third variable loop (V3) epitopes by the first and second variable loops (V1V2) within the native HIV-1 envelope glycoprotein trimer
-
Liu L, Cimbro R, Lusso P, Berger EA. 2011. Intraprotomer masking of third variable loop (V3) epitopes by the first and second variable loops (V1V2) within the native HIV-1 envelope glycoprotein trimer. Proc. Natl. Acad. Sci. U. S. A. 108:20148-20153.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 20148-20153
-
-
Liu, L.1
Cimbro, R.2
Lusso, P.3
Berger, E.A.4
-
37
-
-
18744368767
-
Cryptic nature of a conserved, CD4-inducible V3 loop neutralization epitope in the native envelope glycoprotein oligomer of CCR5-restricted, but not CXCR4-using, primary human immunodeficiency virus type 1 strains
-
Lusso P, et al. 2005. Cryptic nature of a conserved, CD4-inducible V3 loop neutralization epitope in the native envelope glycoprotein oligomer of CCR5-restricted, but not CXCR4-using, primary human immunodeficiency virus type 1 strains. J. Virol. 79:6957-6968.
-
(2005)
J. Virol.
, vol.79
, pp. 6957-6968
-
-
Lusso, P.1
-
38
-
-
19144365910
-
Immunization with envelope subunit vaccine products elicits neutralizing antibodies against laboratory-adapted but not primary isolates of human immunodeficiency virus type 1
-
Mascola JR, et al. 1996. Immunization with envelope subunit vaccine products elicits neutralizing antibodies against laboratory-adapted but not primary isolates of human immunodeficiency virus type 1. The National Institute of Allergy and Infectious Diseases AIDS Vaccine Evaluation Group. J. Infect. Dis. 173:340-348.
-
(1996)
J. Infect. Dis.
, vol.173
, pp. 340-348
-
-
Mascola, J.R.1
-
39
-
-
83455254775
-
Structure of HIV-1 gp120V1/V2 domain with broadly neutralizing antibody PG9
-
McLellan JS, et al. 2011. Structure of HIV-1 gp120V1/V2 domain with broadly neutralizing antibody PG9. Nature 480:336-343.
-
(2011)
Nature
, vol.480
, pp. 336-343
-
-
McLellan, J.S.1
-
41
-
-
75749148378
-
Investigating solution-phase protein structure and dynamics by hydrogen exchange mass spectrometry
-
16
-
Morgan CR, Engen JR. 2009. Investigating solution-phase protein structure and dynamics by hydrogen exchange mass spectrometry. Curr. Protoc. Protein Sci. 17:Unit 17.16.11-17.
-
(2009)
Curr. Protoc. Protein Sci.
, vol.17
, Issue.UNIT 17
, pp. 11-17
-
-
Morgan, C.R.1
Engen, J.R.2
-
42
-
-
34248397195
-
Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering
-
Mylonas E, Svergun DI. 2007. Accuracy of molecular mass determination of proteins in solution by small-angle X-ray scattering. J. Appl. Crystallogr. 40:s245-s249.
-
(2007)
J. Appl. Crystallogr.
, vol.40
-
-
Mylonas, E.1
Svergun, D.I.2
-
43
-
-
0034255034
-
Energetics of the HIV gp120-CD4 binding reaction
-
Myszka DG, et al. 2000. Energetics of the HIV gp120-CD4 binding reaction. Proc. Natl. Acad. Sci. U. S. A. 97:9026-9031.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 9026-9031
-
-
Myszka, D.G.1
-
44
-
-
75749133275
-
Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility
-
Pancera M, et al. 2010. Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility. Proc. Natl. Acad. Sci. U. S. A. 107:1166-1171.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 1166-1171
-
-
Pancera, M.1
-
45
-
-
33646146379
-
GP120: target for neutralizing HIV-1 antibodies
-
Pantophlet R, Burton DR. 2006. GP120: target for neutralizing HIV-1 antibodies. Annu. Rev. Immunol. 24:739-769.
-
(2006)
Annu. Rev. Immunol.
, vol.24
, pp. 739-769
-
-
Pantophlet, R.1
Burton, D.R.2
-
46
-
-
67650992092
-
Structure and flexibility within proteins as identified through small angle X-ray scattering
-
Pelikan M, Hura GL, Hammel M. 2009. Structure and flexibility within proteins as identified through small angle X-ray scattering. Gen. Physiol. Biophys. 28:174-189.
-
(2009)
Gen. Physiol. Biophys.
, vol.28
, pp. 174-189
-
-
Pelikan, M.1
Hura, G.L.2
Hammel, M.3
-
48
-
-
35748982423
-
Analysis of X-ray and neutron scattering from biomolecular solutions
-
Petoukhov MV, Svergun DI. 2007. Analysis of X-ray and neutron scattering from biomolecular solutions. Curr. Opin. Struct. Biol. 17:562-571.
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 562-571
-
-
Petoukhov, M.V.1
Svergun, D.I.2
-
49
-
-
4444221565
-
UCSF Chimera: a visualization system for exploratory research and analysis
-
Pettersen EF, et al. 2004. UCSF Chimera: a visualization system for exploratory research and analysis. J. Comput. Chem. 25:1605-1612.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
-
50
-
-
37149049312
-
X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution
-
Putnam CD, Hammel M, Hura GL, Tainer JA. 2007. X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution. Q. Rev. Biophys. 40:191-285.
-
(2007)
Q. Rev. Biophys.
, vol.40
, pp. 191-285
-
-
Putnam, C.D.1
Hammel, M.2
Hura, G.L.3
Tainer, J.A.4
-
51
-
-
77954224920
-
Glycosylation patterns of HIV-1 gp120 depend on the type of expressing cells and affect antibody recognition
-
Raska M, et al. 2010. Glycosylation patterns of HIV-1 gp120 depend on the type of expressing cells and affect antibody recognition. J. Biol. Chem. 285:20860-20869.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 20860-20869
-
-
Raska, M.1
-
52
-
-
73349094086
-
Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand
-
Rerks-Ngarm S, et al. 2009. Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand. N. Engl. J. Med. 361:2209-2220.
-
(2009)
N. Engl. J. Med.
, vol.361
, pp. 2209-2220
-
-
Rerks-Ngarm, S.1
-
53
-
-
0032546952
-
A conserved HIV gp120 glycoprotein structure involved in chemokine receptor binding
-
Rizzuto CD, et al. 1998. A conserved HIV gp120 glycoprotein structure involved in chemokine receptor binding. Science 280:1949-1953.
-
(1998)
Science
, vol.280
, pp. 1949-1953
-
-
Rizzuto, C.D.1
-
54
-
-
79960346105
-
Interaction of the gp120 V1V2 loop with a neighboring gp120 unit shields the HIV envelope trimer against crossneutralizing antibodies
-
Rusert P, et al. 2011. Interaction of the gp120 V1V2 loop with a neighboring gp120 unit shields the HIV envelope trimer against crossneutralizing antibodies. J. Exp. Med. 208:1419-1433.
-
(2011)
J. Exp. Med.
, vol.208
, pp. 1419-1433
-
-
Rusert, P.1
-
55
-
-
58149487645
-
Factors associated with the development of crossreactive neutralizing antibodies during human immunodeficiency virus type 1 infection
-
Sather DN, et al. 2009. Factors associated with the development of crossreactive neutralizing antibodies during human immunodeficiency virus type 1 infection. J. Virol. 83:757-769.
-
(2009)
J. Virol.
, vol.83
, pp. 757-769
-
-
Sather, D.N.1
-
56
-
-
0027814829
-
Nonaffinity purification of recombinant gp120 for use in AIDS vaccine development
-
Scandella CJ, et al. 1993. Nonaffinity purification of recombinant gp120 for use in AIDS vaccine development. AIDS Res. Hum. Retroviruses 9:1233-1244.
-
(1993)
AIDS Res. Hum. Retroviruses
, vol.9
, pp. 1233-1244
-
-
Scandella, C.J.1
-
57
-
-
34247636624
-
Exploiting the defensive sugars of HIV-1 for drug and vaccine design
-
Scanlan CN, Offer J, Zitzmann N, Dwek RA. 2007. Exploiting the defensive sugars of HIV-1 for drug and vaccine design. Nature 446:1038-1045.
-
(2007)
Nature
, vol.446
, pp. 1038-1045
-
-
Scanlan, C.N.1
Offer, J.2
Zitzmann, N.3
Dwek, R.A.4
-
58
-
-
80052925616
-
Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding
-
Scheid JF, et al. 2011. Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding. Science 333:1633-1637.
-
(2011)
Science
, vol.333
, pp. 1633-1637
-
-
Scheid, J.F.1
-
59
-
-
77954280480
-
FoXS: a web server for rapid computation and fitting of SAXS profiles
-
Schneidman-Duhovny D, Hammel M, Sali A. 2010. FoXS: a web server for rapid computation and fitting of SAXS profiles. Nucleic Acids Res. 38:W540-W544.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Schneidman-Duhovny, D.1
Hammel, M.2
Sali, A.3
-
60
-
-
69949142350
-
Distinct structures of scrapie prion protein (PrPSc)-seeded versus spontaneous recombinant prion protein fibrils re-vealed by hydrogen/deuterium exchange
-
Smirnovas V, et al. 2009. Distinct structures of scrapie prion protein (PrPSc)-seeded versus spontaneous recombinant prion protein fibrils re-vealed by hydrogen/deuterium exchange. J. Biol. Chem. 284:24233-24241.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 24233-24241
-
-
Smirnovas, V.1
-
61
-
-
0031018084
-
Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry
-
Smith DL, Deng Y, Zhang Z. 1997. Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry. J. Mass Spectrom. 32:135-146.
-
(1997)
J. Mass Spectrom.
, vol.32
, pp. 135-146
-
-
Smith, D.L.1
Deng, Y.2
Zhang, Z.3
-
62
-
-
34248369857
-
Biological small-angle X-ray scattering facility at the Stanford Synchrotron Radiation Laboratory
-
Smolsky IL, et al. 2007. Biological small-angle X-ray scattering facility at the Stanford Synchrotron Radiation Laboratory. J. Appl. Crystallogr. 40: s453-s458.
-
(2007)
J. Appl. Crystallogr.
, vol.40
-
-
Smolsky, I.L.1
-
63
-
-
0031878761
-
Determinants of human immunodeficiency virus type 1 envelope glycoprotein activation by soluble CD4 and monoclonal antibodies
-
Sullivan N, et al. 1998. Determinants of human immunodeficiency virus type 1 envelope glycoprotein activation by soluble CD4 and monoclonal antibodies. J. Virol. 72:6332-6338.
-
(1998)
J. Virol.
, vol.72
, pp. 6332-6338
-
-
Sullivan, N.1
-
64
-
-
0031902829
-
CD4-induced conformational changes in the human immunodeficiency virus type 1 gp120 glycoprotein: consequences for virus entry and neutralization
-
Sullivan N, et al. 1998. CD4-induced conformational changes in the human immunodeficiency virus type 1 gp120 glycoprotein: consequences for virus entry and neutralization. J. Virol. 72:4694-4703.
-
(1998)
J. Virol.
, vol.72
, pp. 4694-4703
-
-
Sullivan, N.1
-
65
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
Svergun DI. 1992. Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J. Appl. Crystallogr. 25:495-503.
-
(1992)
J. Appl. Crystallogr.
, vol.25
, pp. 495-503
-
-
Svergun, D.I.1
-
66
-
-
0026243243
-
Mathematical methods in small-angle scattering data analysis
-
Svergun DI. 1991. Mathematical methods in small-angle scattering data analysis. J. Appl. Crystallogr. 24:485-492.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 485-492
-
-
Svergun, D.I.1
-
67
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun DI. 1999. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys. J. 76:2879-2886.
-
(1999)
Biophys. J.
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
68
-
-
0035010533
-
Determination of domain structure of proteins from X-ray solution scattering
-
Svergun DI, Petoukhov MV, Koch MH. 2001. Determination of domain structure of proteins from X-ray solution scattering. Biophys. J. 80:2946-2953.
-
(2001)
Biophys. J.
, vol.80
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.3
-
69
-
-
0037701585
-
Uniqueness of ab-initio shape determination in small-angle scattering
-
Volkov VV, Svergun DI. 2003. Uniqueness of ab-initio shape determination in small-angle scattering. J. Appl. Crystallogr. 36:860-864.
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
70
-
-
0028802870
-
The complete consensus V3 loop peptide of the envelope protein gp120 of HIV-1 shows pronounced helical character in solution
-
Vranken WF, Budesinsky M, Fant F, Boulez K, Borremans FA. 1995. The complete consensus V3 loop peptide of the envelope protein gp120 of HIV-1 shows pronounced helical character in solution. FEBS Lett. 374: 117-121.
-
(1995)
FEBS Lett
, vol.374
, pp. 117-121
-
-
Vranken, W.F.1
Budesinsky, M.2
Fant, F.3
Boulez, K.4
Borremans, F.A.5
-
71
-
-
33751337111
-
Semi-automated data processing of hydrogen exchange mass spectra using HX-Express
-
Weis DD, Engen JR, Kass IJ. 2006. Semi-automated data processing of hydrogen exchange mass spectra using HX-Express. J. Am. Soc. Mass Spectrom. 17:1700-1703.
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 1700-1703
-
-
Weis, D.D.1
Engen, J.R.2
Kass, I.J.3
-
72
-
-
33749326831
-
Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis
-
Weis DD, Wales TE, Engen JR, Hotchko M, Ten Eyck LF. 2006. Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis. J. Am. Soc. Mass Spectrom. 17: 1498-1509.
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 1498-1509
-
-
Weis, D.D.1
Wales, T.E.2
Engen, J.R.3
Hotchko, M.4
Ten Eyck, L.F.5
-
73
-
-
78651241895
-
Molecular architectures of trimeric SIV and HIV-1 envelope glycoproteins on intact viruses: strain-dependent variation in quaternary structure
-
doi: 10.1371/ journal.ppat.1001249
-
White TA, et al. 2010. Molecular architectures of trimeric SIV and HIV-1 envelope glycoproteins on intact viruses: strain-dependent variation in quaternary structure. PLoS Pathog. 6:e1001249. doi:10.1371/ journal.ppat.1001249.
-
(2010)
PLoS Pathog
, vol.6
-
-
White, T.A.1
-
74
-
-
0035783173
-
Using situs for flexible and rigid-body fitting of multiresolution single-molecule data
-
Wriggers W, Birmanns S. 2001. Using situs for flexible and rigid-body fitting of multiresolution single-molecule data. J. Struct. Biol. 133:193-202.
-
(2001)
J. Struct. Biol.
, vol.133
, pp. 193-202
-
-
Wriggers, W.1
Birmanns, S.2
-
75
-
-
78650426126
-
Single-particle cryoelectron microscopy analysis reveals the HIV-1 spike as a tripod structure
-
Wu SR, et al. 2010. Single-particle cryoelectron microscopy analysis reveals the HIV-1 spike as a tripod structure. Proc. Natl. Acad. Sci. U. S. A. 107:18844-18849.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 18844-18849
-
-
Wu, S.R.1
-
76
-
-
77954920017
-
Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1
-
Wu X, et al. 2010. Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1. Science 329:856-861.
-
(2010)
Science
, vol.329
, pp. 856-861
-
-
Wu, X.1
-
77
-
-
0029119783
-
Involvement of the V1/V2 variable loop structure in the exposure of human immunodeficiency virus type 1 gp120 epitopes induced by receptor binding
-
Wyatt R, et al. 1995. Involvement of the V1/V2 variable loop structure in the exposure of human immunodeficiency virus type 1 gp120 epitopes induced by receptor binding. J. Virol. 69:5723-5733.
-
(1995)
J. Virol.
, vol.69
, pp. 5723-5733
-
-
Wyatt, R.1
-
78
-
-
33748038359
-
Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ
-
doi: 10.1371/ journal.ppat.0020083
-
Zanetti G, Briggs JA, Grunewald K, Sattentau QJ, Fuller SD. 2006. Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ. PLoS Pathog. 2:e83. doi:10.1371/ journal.ppat.0020083.
-
(2006)
PLoS Pathog
, vol.2
-
-
Zanetti, G.1
Briggs, J.A.2
Grunewald, K.3
Sattentau, Q.J.4
Fuller, S.D.5
-
79
-
-
0030046197
-
Amide hydrogen exchange determined by mass spectrometry: application to rabbit muscle aldolase
-
Zhang Z, Post CB, Smith DL. 1996. Amide hydrogen exchange determined by mass spectrometry: application to rabbit muscle aldolase. Biochemistry 35:779-791.
-
(1996)
Biochemistry
, vol.35
, pp. 779-791
-
-
Zhang, Z.1
Post, C.B.2
Smith, D.L.3
-
80
-
-
77954943648
-
Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01
-
Zhou T, et al. 2010. Structural basis for broad and potent neutralization of HIV-1 by antibody VRC01. Science 329:811-817.
-
(2010)
Science
, vol.329
, pp. 811-817
-
-
Zhou, T.1
-
81
-
-
33847101745
-
Structural definition of a conserved neutralization epitope on HIV-1 gp120
-
Zhou T, et al. 2007. Structural definition of a conserved neutralization epitope on HIV-1 gp120. Nature 445:732-737.
-
(2007)
Nature
, vol.445
, pp. 732-737
-
-
Zhou, T.1
-
82
-
-
33745203490
-
Distribution and three-dimensional structure of AIDS virus envelope spikes
-
Zhu P, et al. 2006. Distribution and three-dimensional structure of AIDS virus envelope spikes. Nature 441:847-852.
-
(2006)
Nature
, vol.441
, pp. 847-852
-
-
Zhu, P.1
-
83
-
-
0038618737
-
A novel human antibody against human immunodeficiency virus type 1 gp120 is V1, V2, and V3 loop dependent and helps delimit the epitope of the broadly neutralizing antibody immunoglobulin G1 b12
-
Zwick MB, et al. 2003. A novel human antibody against human immunodeficiency virus type 1 gp120 is V1, V2, and V3 loop dependent and helps delimit the epitope of the broadly neutralizing antibody immunoglobulin G1 b12. J. Virol. 77:6965-6978.
-
(2003)
J. Virol.
, vol.77
, pp. 6965-6978
-
-
Zwick, M.B.1
|