Probing the non-covalent structure of proteins by amide hydrogen exchange and mass spectrometry

Journal of Mass Spectrometry

Volumn 32, Issue 2, 1997, Pages 135-146

  Smith, David L ^a   Deng, Yuzhong ^a   Zhang, Zhongqi ^a,b  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^b FLORIDA STATE UNIVERSITY   (United States)

Author keywords

Hydrogen exchange; Mass spectrometry; Nuclear magnetic resonance; Protein; Structure

Indexed keywords

FRUCTOSE BISPHOSPHATE ALDOLASE;

HYDROGEN BOND; INFRARED SPECTROSCOPY; MASS SPECTROMETRY; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN MODIFICATION; PROTEIN STRUCTURE; REVIEW;

AMIDES; DEUTERIUM OXIDE; FRUCTOSE-BISPHOSPHATE ALDOLASE; HYDROGEN; KINETICS; MAGNETIC RESONANCE SPECTROSCOPY; MASS SPECTROMETRY; MODELS, MOLECULAR; PEPTIDES; PROTEIN CONFORMATION; PROTEINS; SRC-FAMILY KINASES;

EID: 0031018084     PISSN: 10765174     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1096-9888(199702)32:2<135::AID-JMS486>3.0.CO;2-M     Document Type: Review

References (88)

1. A. Hvidt and S. O. Nielsen, Adv. Protein Chem. 21, 287 (1966).
2. S. W. Englander and J. J. Englander, Methods Enzymol. 49, 24 (1978).
3. S. W. Englander and N. R. Kallenbach, Q. Rev. Biophys. 16, 521 (1984).
4. C. K. Woodward and B. D. Hilton, Biophys. J. 32, 561 (1980).
5. C. Woodward, I. Simon and E. Tüchsen, Mol. Cell. Biochem. 48, 135 (1982).
6. G. Wagner and K. Wüthrich, J. Mol. Biol. 160, 343 (1982).
7. G. Wagner, C. I. Stassinopoulou and K. Wüthrich, Eur. J. Biochem. 145, 431 (1984).
8. A. J. Wand, H. Roder and S. W. Englander, Biochemistry 25, 1107 (1986).
9. Y. Paterson, S. W. Englander and H. Roder, Science 249, 755 (1990).
10. S. Spera, M. Ikura and A. Bax, J. Biomol. NMR 1, 155 (1991).
11. S. N. Loh, K. E. Prehoda, J. Wang and J. L. Markley, Biochemistry 32, 11022 (1993).
12. B. B. Kragelund, J. Knudsen and F. M. Poulsen, J. Mol. Biol. 250, (1995).
13. D. C. Benjamin, D. C. Williams, R. J. Poljak and G. S. Rule, J. Mol. Biol. 257, 866 (1996).
14. S. W. Englander and L. Mayne, Annu. Rev. Biophys. Biomol. Struct. 21, 243 (1992).
15. C. Frieden, S. D. Hoeltzli and I. J. Ropson, Protein Sci. 2, 2007 (1993).
16. C. K. Woodward, Curr. Biol. 4, 112 (1994).
17. S. D. Hooke, S. E. Radford and C. M. Dobson, Biochemistry 33, 5867 (1994).
18. B. E. Jones and C. R. Matthews, Protein Sci. 4, 167 (1995).
19. Y. Bai, T. R. Sosnick, L. Mayne and S. W. Englander, Science 269, 192 (1995).
20. L. A. Morozova, D. T. Haynie, C. Arico-Muendel, H. Van Dael and C. M. Dobson, Nature Struct. Biol. 2, 871 (1995).
21. B. E. Jones and C. R. Matthews, Protein Sci. 4, 167 (1995).
22. K.-S. Kim, F. Tao, J. Fuchs, A. T. Danishefsky, D. Housset, A. Wlodawer and C. Woodward, Protein Sci. 2, 588 (1993).
23. J. Clarke, A. M. Hounslow and A. R. Fersht, J. Mol. Biol. 253, 505 (1995).
24. S. Rothemund, M. Beyermann, E. Krause, G. Krause, M. Bienert, R. S. Hodges, B. D. Sykes and F. D. Sonnichsen, Biochemistry 34, 12954 (1995).
25. J. L. Marmorino, D. S. Auld, S. F. Betz, D. F. Doyle, G. B. Young and G. J. Pielak, Protein Sci. 2, 1966 (1993).
26. M. F. Jeng and H. J. Dyson, Biochemistry 34, 611 (1995).
27. T. A. Lyons, G. Ratnaswamy and T. C. Pochapsky, Protein Sci. 5, 627 (1996).
28. D. L. Smith and Z.-Q. Zhang, Mass Spectrom. Rev. 13, 411 (1994).
29. B. Ganem, Y. T. Li and J. D. Henion, J. Am. Chem. Soc. 113, 6294 (1991).
30. A. K. Ganguly, B. N. Pramanik, A. Tsarbopoulos, T. R. Covey, E. Huang and S. A. Fuhrman, J. Am. Chem. Soc. 114, 6559 (1992).
31. R. D. Smith, K. J. Light-Wahl, B. E. Winger and J. A. Loo, Org. Mass Spectrom. 27, 811 (1992).
32. M. Jaquinod, E. Leize, N. Potier, A. M. Albrecht, A. Shanzer and A. Van Dorsselaer, Tetrahedron Lett. 34, 2771 (1993).
33. Y. T. Li, Y. L. Hsieh, J. D. Henion, M. W. Senko, F. W. McLafferty and B. Ganem, J. Am. Chem. Soc. 115, 8409 (1993).
34. P. F. Hu and J. A. Loo, J. Mass Spectrom. 30, 1076 (1995).
35. R. J. Anderegg and D. S. Wagner, J. Am. Chem. Soc. 117, 1374 (1995).
36. X. Chang, A. Harms, P. Goudreau, T. Terwilliger and R. Smith, Proc. Natl. Acad. Sci. USA 93, 7022 (1996).
37. J. A. Loo, C. G. Edmonds, H. R. Udseth and R. D. Smith, Anal. Chem. 62, 693 (1990).
38. S. K. Chowdhury, V. Katta and B. T. Chait, J. Am. Chem. Soc. 112, 9012 (1990).
39. R. Guevremont, K. W. Siu, J. C. Y. Le Blanc and S. S. Barman, J. Am. Soc. Mass Spectrom. 3, 1992).
40. R. Fang and Y. Konishi, J. Am. Soc. Mass Spectrom. 4, 638 (1993).
41. D. Suckaw, Y. Shi, S. C. Beu, M. W. Senko, J. P. Quinn, F. M. Wampler, III, and F. W. McLafferty, Proc. Natl. Acad. Sci. USA 90, 790 (1993).
42. G. Thévenon-Emeric and D. L. Smith, in Proceedings of the 39th Conference on Mass Spectrometry and Allied Topics, Nashville, TN, 1991, p. 1436.
43. V. Katta and B. T. Chait, Rapid Commun. Mass Spectrom. 5, 214 (1991).
44. G. Thévenon-Emeric, J. Kozlowski, Z.-Q Zhang and D. L. Smith, Anal. Chem. 64, 2456 (1992).
45. V. Katta and B. T. Chait J. Am. Chem. Soc. 115, 6317 (1993).
46. A. Miranker, C. V. Robinson, S. E. Radford, R. T. Aplin and C. M. Dobson, Science 262, 896 (1993).
47. D. S. Wagner, L. G. Melton, Y. B. Yen, B. W. Erickson and R. J. Anderegg, Protein Sci. 3, 1305 (1994).
48. B. B. Kragelund, C. V. Robinson, J. Knudsen, C. M. Dobson and F. M. Poulsen, Biochemistry 34, 7217 (1995).
49. F. Wang and X.-J. Tang, Biochemistry 35, 4069 (1996).
50. P. Guy, H. Remigy, M. Jaquinod, B. Bersch, L. Blanchard, A. Dolla and E. Forest, Biochem. Biophys. Res. Commun. 218, 97 (1996).
51. Z.-Q Zhang and D. L. Smith, Protein Sci. 2, 522 (1993).
52. Y. Liu and D. L. Smith, J. Am. Soc. Mass Spectrom. 5, 19 (1994).
53. R. S. Johnson and K. A. Walsh, Protein Sci. 3, 2411 (1994).
54. H. Ohguro, K. Palczewski, K. A. Walsh and R. S. Johnson, Protein Sci. 3, 2428 (1994).
55. Z.-Q. Zhang, C. B. Post and D. L. Smith, Biochemistry 35, 779 (1996).
56. Z.-Q. Zhang and D. L. Smith, Protein Sci. 5, 1282 (1996).
57. K. Dharmasiri and D. L. Smith, Anal. Chem. 68, 2340 (1996).
58. R. S. Johnson, J. Am. Soc. Mass Spectrom. 7, 515 (1996).
59. M. Jaquinod, P. Guy, F. Halgand, M. Caffrey, J. Fitch, M. Cusanovich and E. Forest, FEBS Lett. 380, 44 (1996).
60. T. Takano and R. E. Dickerson, Proc. Natl. Acad. Sci. USA 77, 6371 (1980).
61. T. Takano, Dickerson, R. E., J. Mol. Biol. 153, 95 (1981).
62. K. Dharmasiri and D. L. Smith, submitted for publication.
63. M. T. Brown and J. A. Cooper, Biochim. Biophys. Acta 1287, 121 (1996).
64. J. Engen, T. Smithgall, W. Gmeiner and D. L. Smith, (unpublished results).
65. G. A. Elöve, A. F. Chaffotte, H. Roder and M. E. Goldberg, Biochemistry 31, 6876 (1992).
66. L. Lin, R. J. Pinker, K. Forde, G. D. Rose and N. R. Kallenbach, Nature Struct. Biol. 1, 447 (1994).
67. R. S. Molday, S. W. Englander and R. G. Kallen, Biochemistry 11, 150 (1972).
68. Y. Bai, J. S. Milne, L. Mayne and S. W. Englander, Proteins: Struct. Funct. Genet. 17, 75 (1993).
69. S. L. Mayo and R. L. Baldwin, Science 262, 873 (1993).
70. Y. W. Bai, J. S. Milne, L. Mayne and S. W. Englander, Proteins: Struct. Funct. Genet. 20, 4 (1994).
71. M. D. Finucane and O. Jardetzky, Protein Sci. 5, 653 (1996).
72. K.-S. Kim and C. Woodward, Biochemistry 32, 9609 (1993).
73. D. W. Miller and K. A. Dill, Protein Sci. 4, 1860 (1995).
74. S. W. Englander, N. W. Downer and H. Teitelbaum, Annu. Rev. Biochem. 41, 903 (1972).
75. H. Roder, G. Wagner and K. Wüthrich, Biochemistry 24, 7396 (1985).
76. Y.-Z. Deng, Z.-Q. Zhang and D. L. Smith, unpublished results.
77. J. J. Rosa and F. M. Richards, J. Mol. Biol. 133, 399 (1979).
78. J. J. Rosa and F. M. Richards, J. Mol. Biol. 145, 835 (1981).
79. J. J. Englander, J. R. Rogero and S. W. Englander, Anal. Biochem. 147, 234 (1985).
80. N. B. Afeyan, S. P. Fulton and F. E. Regnier, J. Chromatogr. 544, 267 (1991).
81. Z.-Q. Zhang, PhD Thesis, Purdue University (1995).
82. J. Yergey, D. Heller, R. J. Cotter and C. Fenselau, Anal. Chem. 55, 353 (1983).
83. J. A. McCloskey, Methods Enzymol. 193, 896 (1990).
84. R. J. Anderegg, D. S. Wagner and C. L. Stevenson, J. Am. Soc. Mass Spectrom. 5, 425 (1994).
85. R. S. Johnson, D. Krylov and K. A. Walsh, J. Mass Spectrom. 30, 386 (1995).
86. A. Miranker, C. V. Robinson, S. E. Radford and C. M. Dobson, FASEB J. 10, 93 (1996).
87. G. Gemmecker, W. Jahnke and H. Kessler, J. Am. Chem. Soc. 115, 11620 (1993).
88. Y.-Z.-Q. Zhang, Y. Paterson and H. Roder, Protein Sci. 4, 804 (1995).